Multiple sequence alignment - TraesCS1D01G146400

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G146400 chr1D 100.000 8160 0 0 1 8160 202551437 202559596 0.000000e+00 15069.0
1 TraesCS1D01G146400 chr1D 87.960 598 32 15 7399 7981 374363120 374363692 0.000000e+00 669.0
2 TraesCS1D01G146400 chr1D 98.131 107 2 0 2975 3081 48024729 48024623 3.890000e-43 187.0
3 TraesCS1D01G146400 chr1D 93.651 126 6 2 2975 3099 349422925 349423049 3.890000e-43 187.0
4 TraesCS1D01G146400 chr1D 95.455 88 4 0 4209 4296 202555732 202555645 3.070000e-29 141.0
5 TraesCS1D01G146400 chr1D 92.063 63 1 1 4249 4307 478754363 478754425 1.460000e-12 86.1
6 TraesCS1D01G146400 chr1D 84.270 89 10 4 1 86 15303589 15303502 5.250000e-12 84.2
7 TraesCS1D01G146400 chr1D 90.476 63 2 1 4249 4307 480099797 480099735 6.790000e-11 80.5
8 TraesCS1D01G146400 chr1D 84.524 84 7 5 1 80 11976334 11976415 2.440000e-10 78.7
9 TraesCS1D01G146400 chr1A 96.075 2038 54 8 962 2976 256810426 256812460 0.000000e+00 3297.0
10 TraesCS1D01G146400 chr1A 93.235 1552 49 12 4009 5537 256813789 256815307 0.000000e+00 2233.0
11 TraesCS1D01G146400 chr1A 95.824 934 33 4 3079 4012 256812458 256813385 0.000000e+00 1504.0
12 TraesCS1D01G146400 chr1A 94.263 889 37 9 5453 6331 256815275 256816159 0.000000e+00 1347.0
13 TraesCS1D01G146400 chr1A 96.540 578 17 2 6453 7030 256816157 256816731 0.000000e+00 953.0
14 TraesCS1D01G146400 chr1A 83.739 658 60 25 212 830 256808365 256809014 5.490000e-161 579.0
15 TraesCS1D01G146400 chr1A 96.241 133 4 1 6327 6458 481650972 481651104 4.960000e-52 217.0
16 TraesCS1D01G146400 chr1A 85.648 216 10 9 1 215 256805607 256805802 2.980000e-49 207.0
17 TraesCS1D01G146400 chr1A 87.640 89 5 5 1 86 131802782 131802697 1.870000e-16 99.0
18 TraesCS1D01G146400 chr1A 100.000 42 0 0 4209 4250 256814057 256814016 2.440000e-10 78.7
19 TraesCS1D01G146400 chr1B 94.946 1207 29 8 4266 5452 296488238 296489432 0.000000e+00 1862.0
20 TraesCS1D01G146400 chr1B 94.224 1108 28 6 1725 2811 296485737 296486829 0.000000e+00 1659.0
21 TraesCS1D01G146400 chr1B 94.894 940 25 7 3079 4018 296487097 296488013 0.000000e+00 1448.0
22 TraesCS1D01G146400 chr1B 94.762 840 26 7 5508 6331 296489403 296490240 0.000000e+00 1291.0
23 TraesCS1D01G146400 chr1B 95.425 765 23 4 972 1725 296478287 296479050 0.000000e+00 1208.0
24 TraesCS1D01G146400 chr1B 98.772 570 4 3 6834 7402 296490700 296491267 0.000000e+00 1011.0
25 TraesCS1D01G146400 chr1B 88.142 818 61 21 1 785 296323709 296324523 0.000000e+00 941.0
26 TraesCS1D01G146400 chr1B 95.844 385 14 1 6453 6837 296490238 296490620 8.990000e-174 621.0
27 TraesCS1D01G146400 chr1B 95.431 197 8 1 4009 4205 296488040 296488235 6.150000e-81 313.0
28 TraesCS1D01G146400 chr1B 96.429 168 6 0 2809 2976 296486932 296487099 2.240000e-70 278.0
29 TraesCS1D01G146400 chr1B 93.103 145 8 2 6330 6473 167585697 167585554 2.310000e-50 211.0
30 TraesCS1D01G146400 chr1B 93.023 43 1 2 890 932 25799299 25799339 2.460000e-05 62.1
31 TraesCS1D01G146400 chr3D 88.682 804 50 12 7395 8160 580085872 580086672 0.000000e+00 942.0
32 TraesCS1D01G146400 chr3D 95.763 118 5 0 2967 3084 551006387 551006270 3.010000e-44 191.0
33 TraesCS1D01G146400 chr3D 94.000 50 3 0 4202 4251 173579410 173579361 8.780000e-10 76.8
34 TraesCS1D01G146400 chr4D 88.720 789 54 15 7399 8158 22021820 22021038 0.000000e+00 931.0
35 TraesCS1D01G146400 chr4D 98.131 107 2 0 2975 3081 379164344 379164238 3.890000e-43 187.0
36 TraesCS1D01G146400 chr4D 88.235 102 10 1 4202 4303 36837874 36837973 4.000000e-23 121.0
37 TraesCS1D01G146400 chr4D 89.744 78 5 2 5 80 40117796 40117720 6.740000e-16 97.1
38 TraesCS1D01G146400 chr4D 92.424 66 4 1 6 71 501043507 501043571 8.720000e-15 93.5
39 TraesCS1D01G146400 chr4D 100.000 30 0 0 4014 4043 13606371 13606342 1.000000e-03 56.5
40 TraesCS1D01G146400 chr3A 87.887 776 70 12 7401 8158 657092214 657092983 0.000000e+00 891.0
41 TraesCS1D01G146400 chr3A 86.421 788 72 16 7399 8158 337897093 337897873 0.000000e+00 830.0
42 TraesCS1D01G146400 chr3A 85.106 517 45 9 7399 7890 8650694 8651203 4.400000e-137 499.0
43 TraesCS1D01G146400 chr3A 92.188 64 3 2 4246 4307 593353441 593353504 1.130000e-13 89.8
44 TraesCS1D01G146400 chr3A 100.000 33 0 0 900 932 709978300 709978268 2.460000e-05 62.1
45 TraesCS1D01G146400 chr2A 86.869 792 63 23 7397 8158 526306880 526307660 0.000000e+00 848.0
46 TraesCS1D01G146400 chr2A 86.170 564 51 15 7399 7938 723888029 723887469 1.180000e-162 584.0
47 TraesCS1D01G146400 chr2A 86.913 298 18 5 7401 7687 734906303 734906016 1.710000e-81 315.0
48 TraesCS1D01G146400 chr2A 88.679 53 6 0 3999 4051 710271958 710272010 1.900000e-06 65.8
49 TraesCS1D01G146400 chr2A 97.222 36 1 0 4013 4048 699975338 699975303 2.460000e-05 62.1
50 TraesCS1D01G146400 chr3B 85.607 799 60 22 7401 8160 749989891 749989109 0.000000e+00 787.0
51 TraesCS1D01G146400 chr3B 96.183 131 4 1 6326 6455 709011868 709011738 6.420000e-51 213.0
52 TraesCS1D01G146400 chr3B 89.933 149 7 8 2974 3117 214560265 214560120 1.400000e-42 185.0
53 TraesCS1D01G146400 chr3B 95.349 43 0 2 898 939 220347272 220347231 5.290000e-07 67.6
54 TraesCS1D01G146400 chr3B 95.122 41 0 2 900 939 219021516 219021477 6.840000e-06 63.9
55 TraesCS1D01G146400 chr3B 92.857 42 3 0 891 932 246117899 246117940 2.460000e-05 62.1
56 TraesCS1D01G146400 chr7A 89.799 598 46 12 7401 7987 202375279 202374686 0.000000e+00 752.0
57 TraesCS1D01G146400 chr7A 84.123 781 77 26 7401 8158 37183566 37182810 0.000000e+00 712.0
58 TraesCS1D01G146400 chr7A 81.896 823 81 26 7396 8160 49703412 49704224 4.160000e-177 632.0
59 TraesCS1D01G146400 chr7A 86.088 611 55 16 7399 7987 75616117 75615515 1.490000e-176 630.0
60 TraesCS1D01G146400 chr7A 81.126 604 60 31 7399 7987 8514226 8513662 1.260000e-117 435.0
61 TraesCS1D01G146400 chr7A 88.855 332 34 1 7830 8158 613643086 613642755 9.860000e-109 405.0
62 TraesCS1D01G146400 chr7A 86.574 216 22 6 7401 7610 701476653 701476867 1.770000e-56 231.0
63 TraesCS1D01G146400 chr7A 88.398 181 14 4 7394 7571 581088447 581088623 2.310000e-50 211.0
64 TraesCS1D01G146400 chr7A 89.247 93 5 5 1 90 700066139 700066049 2.410000e-20 111.0
65 TraesCS1D01G146400 chr5A 89.123 616 42 12 7391 7987 698172872 698172263 0.000000e+00 743.0
66 TraesCS1D01G146400 chr5A 83.524 613 67 20 7399 7987 476020983 476021585 7.200000e-150 542.0
67 TraesCS1D01G146400 chr5A 85.106 94 9 5 1 91 46713033 46712942 3.140000e-14 91.6
68 TraesCS1D01G146400 chr5A 83.019 106 6 3 4202 4306 174594119 174594025 1.460000e-12 86.1
69 TraesCS1D01G146400 chr2B 88.599 614 35 16 7399 7987 64115374 64115977 0.000000e+00 713.0
70 TraesCS1D01G146400 chr2B 84.882 635 70 16 7540 8160 729875637 729876259 1.160000e-172 617.0
71 TraesCS1D01G146400 chr2B 83.993 606 38 18 7401 7987 211598868 211598303 2.020000e-145 527.0
72 TraesCS1D01G146400 chr2B 82.696 601 67 26 7399 7987 57169713 57169138 4.400000e-137 499.0
73 TraesCS1D01G146400 chr2B 84.192 291 46 0 7868 8158 26947470 26947760 4.820000e-72 283.0
74 TraesCS1D01G146400 chr2B 87.619 210 16 8 7401 7609 4779886 4779686 1.370000e-57 235.0
75 TraesCS1D01G146400 chr2B 97.638 127 2 1 6330 6455 475277756 475277630 4.960000e-52 217.0
76 TraesCS1D01G146400 chr2B 97.345 113 3 0 2974 3086 691451325 691451437 8.360000e-45 193.0
77 TraesCS1D01G146400 chr2B 91.781 73 5 1 9 80 697465716 697465788 5.210000e-17 100.0
78 TraesCS1D01G146400 chr2B 96.000 50 1 1 4203 4251 701340281 701340330 6.790000e-11 80.5
79 TraesCS1D01G146400 chr2B 92.500 40 3 0 4009 4048 662886456 662886495 3.180000e-04 58.4
80 TraesCS1D01G146400 chr6B 96.923 130 3 1 6330 6458 54403535 54403664 4.960000e-52 217.0
81 TraesCS1D01G146400 chr6B 97.368 114 2 1 2969 3082 20752608 20752496 8.360000e-45 193.0
82 TraesCS1D01G146400 chr6B 95.690 116 4 1 2966 3081 100556366 100556252 1.400000e-42 185.0
83 TraesCS1D01G146400 chr6B 83.495 103 12 5 1 99 389903207 389903106 3.140000e-14 91.6
84 TraesCS1D01G146400 chr6B 95.000 40 2 0 901 940 56043865 56043826 6.840000e-06 63.9
85 TraesCS1D01G146400 chr6B 94.737 38 1 1 893 930 693906290 693906254 3.180000e-04 58.4
86 TraesCS1D01G146400 chr5B 94.203 138 6 2 6322 6458 318403808 318403672 8.300000e-50 209.0
87 TraesCS1D01G146400 chr5B 89.412 85 5 4 9 91 470516332 470516414 4.030000e-18 104.0
88 TraesCS1D01G146400 chr5B 89.333 75 6 2 5 77 382379508 382379582 8.720000e-15 93.5
89 TraesCS1D01G146400 chr5B 94.915 59 3 0 4248 4306 655296926 655296984 8.720000e-15 93.5
90 TraesCS1D01G146400 chr5B 94.828 58 3 0 4249 4306 163260674 163260731 3.140000e-14 91.6
91 TraesCS1D01G146400 chr5B 94.000 50 3 0 4202 4251 655296981 655296932 8.780000e-10 76.8
92 TraesCS1D01G146400 chrUn 93.056 144 6 4 6322 6463 85071888 85071747 2.980000e-49 207.0
93 TraesCS1D01G146400 chrUn 98.148 108 2 0 2975 3082 91488908 91489015 1.080000e-43 189.0
94 TraesCS1D01G146400 chrUn 96.429 112 4 0 2974 3085 150796058 150795947 1.400000e-42 185.0
95 TraesCS1D01G146400 chrUn 96.396 111 4 0 2975 3085 143995224 143995334 5.030000e-42 183.0
96 TraesCS1D01G146400 chrUn 97.222 108 3 0 2974 3081 301837029 301836922 5.030000e-42 183.0
97 TraesCS1D01G146400 chrUn 96.396 111 4 0 2974 3084 322990762 322990652 5.030000e-42 183.0
98 TraesCS1D01G146400 chrUn 97.196 107 3 0 2975 3081 15981933 15981827 1.810000e-41 182.0
99 TraesCS1D01G146400 chrUn 96.330 109 4 0 2975 3083 81697232 81697124 6.510000e-41 180.0
100 TraesCS1D01G146400 chrUn 96.296 108 4 0 2975 3082 110700245 110700138 2.340000e-40 178.0
101 TraesCS1D01G146400 chrUn 94.783 115 5 1 2975 3089 267451510 267451397 2.340000e-40 178.0
102 TraesCS1D01G146400 chrUn 94.783 115 5 1 2975 3089 340254878 340254765 2.340000e-40 178.0
103 TraesCS1D01G146400 chrUn 94.286 105 4 1 6818 6922 221544686 221544584 8.480000e-35 159.0
104 TraesCS1D01G146400 chrUn 91.525 59 4 1 4249 4307 92137046 92137103 6.790000e-11 80.5
105 TraesCS1D01G146400 chrUn 90.566 53 3 2 4265 4317 115400289 115400239 1.470000e-07 69.4
106 TraesCS1D01G146400 chrUn 91.837 49 3 1 4203 4250 92137100 92137052 5.290000e-07 67.6
107 TraesCS1D01G146400 chrUn 95.000 40 0 2 4202 4240 115400251 115400289 2.460000e-05 62.1
108 TraesCS1D01G146400 chr7B 91.275 149 9 4 6317 6464 653005898 653005753 4.990000e-47 200.0
109 TraesCS1D01G146400 chr7B 89.781 137 12 2 2974 3110 548384354 548384220 3.030000e-39 174.0
110 TraesCS1D01G146400 chr7B 88.462 78 6 1 4232 4306 162140882 162140959 3.140000e-14 91.6
111 TraesCS1D01G146400 chr7B 88.235 68 5 2 4209 4273 162140949 162140882 2.440000e-10 78.7
112 TraesCS1D01G146400 chr7B 97.297 37 1 0 4012 4048 17687304 17687268 6.840000e-06 63.9
113 TraesCS1D01G146400 chr7B 97.297 37 1 0 4012 4048 17689154 17689118 6.840000e-06 63.9
114 TraesCS1D01G146400 chr6D 99.074 108 1 0 2974 3081 3196381 3196488 2.320000e-45 195.0
115 TraesCS1D01G146400 chr6D 96.522 115 4 0 2967 3081 382979371 382979485 3.010000e-44 191.0
116 TraesCS1D01G146400 chr6D 96.522 115 3 1 2975 3089 112344482 112344369 1.080000e-43 189.0
117 TraesCS1D01G146400 chr6D 98.131 107 2 0 2975 3081 81674638 81674744 3.890000e-43 187.0
118 TraesCS1D01G146400 chr6D 97.248 109 3 0 2974 3082 457694098 457693990 1.400000e-42 185.0
119 TraesCS1D01G146400 chr6D 95.614 114 4 1 2975 3088 450292086 450291974 1.810000e-41 182.0
120 TraesCS1D01G146400 chr6D 84.545 110 6 3 4207 4315 402124969 402124870 1.870000e-16 99.0
121 TraesCS1D01G146400 chr6D 96.296 54 2 0 4253 4306 25626400 25626453 1.130000e-13 89.8
122 TraesCS1D01G146400 chr6D 83.673 98 7 2 4209 4306 402124889 402124977 5.250000e-12 84.2
123 TraesCS1D01G146400 chr6D 94.340 53 3 0 4254 4306 94768082 94768030 1.890000e-11 82.4
124 TraesCS1D01G146400 chr6D 91.379 58 5 0 4249 4306 122992134 122992191 6.790000e-11 80.5
125 TraesCS1D01G146400 chr6D 94.000 50 3 0 4257 4306 157930455 157930406 8.780000e-10 76.8
126 TraesCS1D01G146400 chr6D 92.453 53 4 0 4254 4306 363032578 363032630 8.780000e-10 76.8
127 TraesCS1D01G146400 chr6D 90.000 60 3 3 4194 4250 25626461 25626402 3.160000e-09 75.0
128 TraesCS1D01G146400 chr6D 90.909 55 5 0 4252 4306 338696183 338696129 3.160000e-09 75.0
129 TraesCS1D01G146400 chr6D 79.646 113 11 4 4202 4314 363032627 363032527 4.090000e-08 71.3
130 TraesCS1D01G146400 chr6D 91.837 49 4 0 4202 4250 94768033 94768081 1.470000e-07 69.4
131 TraesCS1D01G146400 chr6D 91.489 47 4 0 4202 4248 157930409 157930455 1.900000e-06 65.8
132 TraesCS1D01G146400 chr6D 84.615 65 8 2 23 86 17962759 17962696 6.840000e-06 63.9
133 TraesCS1D01G146400 chr6D 79.048 105 11 3 4202 4306 128910385 128910478 2.460000e-05 62.1
134 TraesCS1D01G146400 chr6D 83.582 67 9 2 4185 4250 338696115 338696180 2.460000e-05 62.1
135 TraesCS1D01G146400 chr6D 87.755 49 6 0 4202 4250 122992188 122992140 3.180000e-04 58.4
136 TraesCS1D01G146400 chr4B 90.972 144 11 2 6329 6471 580962809 580962667 8.360000e-45 193.0
137 TraesCS1D01G146400 chr4B 91.379 58 5 0 4249 4306 379422400 379422343 6.790000e-11 80.5
138 TraesCS1D01G146400 chr4B 90.566 53 5 0 4198 4250 527285865 527285813 4.090000e-08 71.3
139 TraesCS1D01G146400 chr4B 92.683 41 3 0 4014 4054 32908835 32908875 8.840000e-05 60.2
140 TraesCS1D01G146400 chr4B 100.000 31 0 0 901 931 638539376 638539346 3.180000e-04 58.4
141 TraesCS1D01G146400 chr4A 98.165 109 2 0 2974 3082 127407769 127407661 3.010000e-44 191.0
142 TraesCS1D01G146400 chr4A 92.913 127 6 3 2974 3098 722029801 722029926 1.810000e-41 182.0
143 TraesCS1D01G146400 chr4A 96.610 59 2 0 4249 4307 565436150 565436208 1.870000e-16 99.0
144 TraesCS1D01G146400 chr4A 92.857 42 1 2 4014 4054 580725295 580725255 8.840000e-05 60.2
145 TraesCS1D01G146400 chr7D 97.297 111 3 0 2975 3085 126669698 126669808 1.080000e-43 189.0
146 TraesCS1D01G146400 chr7D 97.297 111 3 0 2975 3085 227507227 227507117 1.080000e-43 189.0
147 TraesCS1D01G146400 chr7D 90.244 82 6 2 1 80 551503812 551503893 1.120000e-18 106.0
148 TraesCS1D01G146400 chr7D 94.915 59 2 1 4249 4307 131468395 131468452 3.140000e-14 91.6
149 TraesCS1D01G146400 chr5D 96.491 114 4 0 2975 3088 339105068 339105181 1.080000e-43 189.0
150 TraesCS1D01G146400 chr5D 96.460 113 4 0 2975 3087 193234627 193234739 3.890000e-43 187.0
151 TraesCS1D01G146400 chr5D 96.396 111 4 0 2972 3082 287434589 287434479 5.030000e-42 183.0
152 TraesCS1D01G146400 chr5D 92.500 40 3 0 4009 4048 422423762 422423801 3.180000e-04 58.4
153 TraesCS1D01G146400 chr2D 96.522 115 3 1 2975 3088 21049259 21049373 1.080000e-43 189.0
154 TraesCS1D01G146400 chr2D 96.522 115 3 1 2975 3089 313224905 313224792 1.080000e-43 189.0
155 TraesCS1D01G146400 chr2D 95.763 118 3 2 2965 3081 605368321 605368437 1.080000e-43 189.0
156 TraesCS1D01G146400 chr2D 90.411 73 6 1 9 80 601706469 601706541 2.420000e-15 95.3
157 TraesCS1D01G146400 chr2D 81.600 125 8 8 4185 4306 120105940 120106052 1.130000e-13 89.8
158 TraesCS1D01G146400 chr6A 91.837 49 4 0 4202 4250 213872277 213872229 1.470000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G146400 chr1D 202551437 202559596 8159 False 15069.000000 15069 100.000000 1 8160 1 chr1D.!!$F2 8159
1 TraesCS1D01G146400 chr1D 374363120 374363692 572 False 669.000000 669 87.960000 7399 7981 1 chr1D.!!$F4 582
2 TraesCS1D01G146400 chr1A 256805607 256816731 11124 False 1445.714286 3297 92.189143 1 7030 7 chr1A.!!$F2 7029
3 TraesCS1D01G146400 chr1B 296478287 296479050 763 False 1208.000000 1208 95.425000 972 1725 1 chr1B.!!$F3 753
4 TraesCS1D01G146400 chr1B 296485737 296491267 5530 False 1060.375000 1862 95.662750 1725 7402 8 chr1B.!!$F4 5677
5 TraesCS1D01G146400 chr1B 296323709 296324523 814 False 941.000000 941 88.142000 1 785 1 chr1B.!!$F2 784
6 TraesCS1D01G146400 chr3D 580085872 580086672 800 False 942.000000 942 88.682000 7395 8160 1 chr3D.!!$F1 765
7 TraesCS1D01G146400 chr4D 22021038 22021820 782 True 931.000000 931 88.720000 7399 8158 1 chr4D.!!$R2 759
8 TraesCS1D01G146400 chr3A 657092214 657092983 769 False 891.000000 891 87.887000 7401 8158 1 chr3A.!!$F4 757
9 TraesCS1D01G146400 chr3A 337897093 337897873 780 False 830.000000 830 86.421000 7399 8158 1 chr3A.!!$F2 759
10 TraesCS1D01G146400 chr3A 8650694 8651203 509 False 499.000000 499 85.106000 7399 7890 1 chr3A.!!$F1 491
11 TraesCS1D01G146400 chr2A 526306880 526307660 780 False 848.000000 848 86.869000 7397 8158 1 chr2A.!!$F1 761
12 TraesCS1D01G146400 chr2A 723887469 723888029 560 True 584.000000 584 86.170000 7399 7938 1 chr2A.!!$R2 539
13 TraesCS1D01G146400 chr3B 749989109 749989891 782 True 787.000000 787 85.607000 7401 8160 1 chr3B.!!$R5 759
14 TraesCS1D01G146400 chr7A 202374686 202375279 593 True 752.000000 752 89.799000 7401 7987 1 chr7A.!!$R4 586
15 TraesCS1D01G146400 chr7A 37182810 37183566 756 True 712.000000 712 84.123000 7401 8158 1 chr7A.!!$R2 757
16 TraesCS1D01G146400 chr7A 49703412 49704224 812 False 632.000000 632 81.896000 7396 8160 1 chr7A.!!$F1 764
17 TraesCS1D01G146400 chr7A 75615515 75616117 602 True 630.000000 630 86.088000 7399 7987 1 chr7A.!!$R3 588
18 TraesCS1D01G146400 chr7A 8513662 8514226 564 True 435.000000 435 81.126000 7399 7987 1 chr7A.!!$R1 588
19 TraesCS1D01G146400 chr5A 698172263 698172872 609 True 743.000000 743 89.123000 7391 7987 1 chr5A.!!$R3 596
20 TraesCS1D01G146400 chr5A 476020983 476021585 602 False 542.000000 542 83.524000 7399 7987 1 chr5A.!!$F1 588
21 TraesCS1D01G146400 chr2B 64115374 64115977 603 False 713.000000 713 88.599000 7399 7987 1 chr2B.!!$F2 588
22 TraesCS1D01G146400 chr2B 729875637 729876259 622 False 617.000000 617 84.882000 7540 8160 1 chr2B.!!$F7 620
23 TraesCS1D01G146400 chr2B 211598303 211598868 565 True 527.000000 527 83.993000 7401 7987 1 chr2B.!!$R3 586
24 TraesCS1D01G146400 chr2B 57169138 57169713 575 True 499.000000 499 82.696000 7399 7987 1 chr2B.!!$R2 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
794 3406 0.468226 TCCACACGCTTCCTCAACTT 59.532 50.000 0.00 0.0 0.00 2.66 F
795 3407 0.868406 CCACACGCTTCCTCAACTTC 59.132 55.000 0.00 0.0 0.00 3.01 F
967 3579 0.988832 TCTAATTCCGGCCAACCAGT 59.011 50.000 2.24 0.0 34.57 4.00 F
971 3583 0.988832 ATTCCGGCCAACCAGTTAGA 59.011 50.000 2.24 0.0 34.57 2.10 F
2057 5989 1.066143 ACCCAAGATTACCACTCGCAG 60.066 52.381 0.00 0.0 0.00 5.18 F
3005 7046 0.527113 TCGGAATTACTTGTCGCGGA 59.473 50.000 6.13 0.0 0.00 5.54 F
3748 7789 0.975040 AGCAACAAACCACCCAAGCA 60.975 50.000 0.00 0.0 0.00 3.91 F
4087 8535 0.941463 ATACGCTGCGCTGCTGATAC 60.941 55.000 32.06 7.4 0.00 2.24 F
5003 9476 2.224769 CCTGCCTTTTCTTGGGTCAGTA 60.225 50.000 0.00 0.0 0.00 2.74 F
6345 10886 0.251297 TTGTACTCCCTCCGTCCGAA 60.251 55.000 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2126 6060 0.607489 GTTGTGTGCATCCTGGAGCT 60.607 55.000 15.75 0.0 0.00 4.09 R
2276 6210 1.500108 TGCAAGGCAAATTTTCTGCG 58.500 45.000 0.00 0.0 40.88 5.18 R
2346 6280 4.330074 CACTTAACTGCCTGAGAAATACCG 59.670 45.833 0.00 0.0 0.00 4.02 R
2403 6337 4.525487 ACTTGTCGTGTTCCAATACCTAGA 59.475 41.667 0.00 0.0 0.00 2.43 R
3066 7107 0.455005 GAACCTACTCCCTCCGTTCG 59.545 60.000 0.00 0.0 0.00 3.95 R
4087 8535 0.744874 CAATTCAGGCATGGGCAGAG 59.255 55.000 0.00 0.0 43.71 3.35 R
5300 9773 1.338674 TGCGCTACATGCTAACCAAGT 60.339 47.619 9.73 0.0 40.11 3.16 R
5301 9774 1.368641 TGCGCTACATGCTAACCAAG 58.631 50.000 9.73 0.0 40.11 3.61 R
6437 10978 0.252103 ACTACTCCCTCCGCCAGAAA 60.252 55.000 0.00 0.0 0.00 2.52 R
7696 12393 1.227002 GGAGAAGGCCGACGATGAC 60.227 63.158 0.00 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 3.878160 TTGAAGAAACCCAACAACACC 57.122 42.857 0.00 0.00 0.00 4.16
55 56 3.056465 TGAAGAAACCCAACAACACCAAC 60.056 43.478 0.00 0.00 0.00 3.77
63 64 2.103143 CAACACCAACGGCGCAAA 59.897 55.556 10.83 0.00 0.00 3.68
111 113 6.917217 TTTGAAAATTGCCACCTTTAACAG 57.083 33.333 0.00 0.00 0.00 3.16
118 120 3.357203 TGCCACCTTTAACAGTGTTCAA 58.643 40.909 12.82 7.14 31.88 2.69
238 2807 7.693952 TCATTAATTCACTCGTAGCAAAATCC 58.306 34.615 0.00 0.00 0.00 3.01
320 2889 3.206639 TCTCCAACCCCCTTCTTTCTTTT 59.793 43.478 0.00 0.00 0.00 2.27
330 2899 5.004448 CCCTTCTTTCTTTTCACTCCTACC 58.996 45.833 0.00 0.00 0.00 3.18
368 2937 8.220755 AGACATATACTGAGAGAGTCTTGAAC 57.779 38.462 0.00 0.00 35.96 3.18
369 2938 7.831690 AGACATATACTGAGAGAGTCTTGAACA 59.168 37.037 0.00 0.00 35.96 3.18
436 3007 6.037726 ACGGATTTTAAAAGTTTGCGAGTTT 58.962 32.000 17.24 0.00 32.23 2.66
445 3016 7.946918 AAAAGTTTGCGAGTTTAAAAATTGC 57.053 28.000 6.87 6.87 30.71 3.56
447 3018 6.272698 AGTTTGCGAGTTTAAAAATTGCTG 57.727 33.333 12.70 0.00 0.00 4.41
675 3277 4.451900 AGACCTACACAAAACCAGAAGTG 58.548 43.478 0.00 0.00 37.95 3.16
725 3335 8.621532 AGTAGAATTAATTGCACAACTGAAGA 57.378 30.769 5.17 0.00 0.00 2.87
735 3345 1.550524 ACAACTGAAGAGCGGCATAGA 59.449 47.619 1.45 0.00 0.00 1.98
762 3374 4.026722 GCTCGCGTTTTCCTCTACTTATTC 60.027 45.833 5.77 0.00 0.00 1.75
789 3401 1.808411 TTTCATCCACACGCTTCCTC 58.192 50.000 0.00 0.00 0.00 3.71
791 3403 0.684535 TCATCCACACGCTTCCTCAA 59.315 50.000 0.00 0.00 0.00 3.02
794 3406 0.468226 TCCACACGCTTCCTCAACTT 59.532 50.000 0.00 0.00 0.00 2.66
795 3407 0.868406 CCACACGCTTCCTCAACTTC 59.132 55.000 0.00 0.00 0.00 3.01
801 3413 3.004734 CACGCTTCCTCAACTTCCATTTT 59.995 43.478 0.00 0.00 0.00 1.82
806 3418 5.476945 GCTTCCTCAACTTCCATTTTCCTTA 59.523 40.000 0.00 0.00 0.00 2.69
808 3420 7.629437 GCTTCCTCAACTTCCATTTTCCTTATC 60.629 40.741 0.00 0.00 0.00 1.75
809 3421 7.032598 TCCTCAACTTCCATTTTCCTTATCT 57.967 36.000 0.00 0.00 0.00 1.98
837 3449 9.807921 ACTTAAAATCTCACTCCCTTTATTCAA 57.192 29.630 0.00 0.00 0.00 2.69
872 3484 9.539194 AGTGGATTTTTAATCTCTCATCCTTTT 57.461 29.630 0.00 0.00 32.78 2.27
873 3485 9.794685 GTGGATTTTTAATCTCTCATCCTTTTC 57.205 33.333 0.00 0.00 32.78 2.29
874 3486 9.532494 TGGATTTTTAATCTCTCATCCTTTTCA 57.468 29.630 0.00 0.00 32.78 2.69
879 3491 8.792830 TTTAATCTCTCATCCTTTTCATTCGT 57.207 30.769 0.00 0.00 0.00 3.85
880 3492 6.917217 AATCTCTCATCCTTTTCATTCGTC 57.083 37.500 0.00 0.00 0.00 4.20
881 3493 5.405935 TCTCTCATCCTTTTCATTCGTCA 57.594 39.130 0.00 0.00 0.00 4.35
882 3494 5.171476 TCTCTCATCCTTTTCATTCGTCAC 58.829 41.667 0.00 0.00 0.00 3.67
883 3495 4.893608 TCTCATCCTTTTCATTCGTCACA 58.106 39.130 0.00 0.00 0.00 3.58
884 3496 5.491070 TCTCATCCTTTTCATTCGTCACAT 58.509 37.500 0.00 0.00 0.00 3.21
885 3497 5.582269 TCTCATCCTTTTCATTCGTCACATC 59.418 40.000 0.00 0.00 0.00 3.06
887 3499 6.639563 TCATCCTTTTCATTCGTCACATCTA 58.360 36.000 0.00 0.00 0.00 1.98
889 3501 7.770433 TCATCCTTTTCATTCGTCACATCTAAT 59.230 33.333 0.00 0.00 0.00 1.73
890 3502 7.921786 TCCTTTTCATTCGTCACATCTAATT 57.078 32.000 0.00 0.00 0.00 1.40
892 3504 6.470235 CCTTTTCATTCGTCACATCTAATTGC 59.530 38.462 0.00 0.00 0.00 3.56
895 3507 5.868257 TCATTCGTCACATCTAATTGCAAC 58.132 37.500 0.00 0.00 0.00 4.17
896 3508 3.989705 TCGTCACATCTAATTGCAACG 57.010 42.857 0.00 0.00 32.33 4.10
897 3509 2.670905 TCGTCACATCTAATTGCAACGG 59.329 45.455 0.00 0.00 32.10 4.44
898 3510 2.785679 GTCACATCTAATTGCAACGGC 58.214 47.619 0.00 0.00 41.68 5.68
908 3520 2.417097 GCAACGGCAAACCAAGCT 59.583 55.556 0.00 0.00 40.72 3.74
909 3521 1.950630 GCAACGGCAAACCAAGCTG 60.951 57.895 0.00 0.00 43.90 4.24
921 3533 3.040965 CAAGCTGTGGTTGGATGGT 57.959 52.632 0.00 0.00 37.38 3.55
924 3536 2.489329 CAAGCTGTGGTTGGATGGTTAG 59.511 50.000 0.00 0.00 37.38 2.34
925 3537 1.985159 AGCTGTGGTTGGATGGTTAGA 59.015 47.619 0.00 0.00 0.00 2.10
926 3538 2.026822 AGCTGTGGTTGGATGGTTAGAG 60.027 50.000 0.00 0.00 0.00 2.43
927 3539 2.941415 GCTGTGGTTGGATGGTTAGAGG 60.941 54.545 0.00 0.00 0.00 3.69
928 3540 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
930 3542 1.913419 TGGTTGGATGGTTAGAGGGAC 59.087 52.381 0.00 0.00 0.00 4.46
931 3543 1.913419 GGTTGGATGGTTAGAGGGACA 59.087 52.381 0.00 0.00 0.00 4.02
933 3545 3.433740 GGTTGGATGGTTAGAGGGACATC 60.434 52.174 0.00 0.00 39.11 3.06
935 3547 3.041211 TGGATGGTTAGAGGGACATCTG 58.959 50.000 0.00 0.00 39.61 2.90
937 3549 4.223953 GGATGGTTAGAGGGACATCTGTA 58.776 47.826 0.00 0.00 39.61 2.74
939 3551 5.308237 GGATGGTTAGAGGGACATCTGTATT 59.692 44.000 0.00 0.00 39.61 1.89
940 3552 6.497259 GGATGGTTAGAGGGACATCTGTATTA 59.503 42.308 0.00 0.00 39.61 0.98
942 3554 7.743116 TGGTTAGAGGGACATCTGTATTAAA 57.257 36.000 0.00 0.00 0.00 1.52
943 3555 8.153221 TGGTTAGAGGGACATCTGTATTAAAA 57.847 34.615 0.00 0.00 0.00 1.52
944 3556 8.607713 TGGTTAGAGGGACATCTGTATTAAAAA 58.392 33.333 0.00 0.00 0.00 1.94
964 3576 4.465632 AAAAATCTAATTCCGGCCAACC 57.534 40.909 2.24 0.00 0.00 3.77
965 3577 2.818751 AATCTAATTCCGGCCAACCA 57.181 45.000 2.24 0.00 34.57 3.67
966 3578 2.348411 ATCTAATTCCGGCCAACCAG 57.652 50.000 2.24 0.00 34.57 4.00
967 3579 0.988832 TCTAATTCCGGCCAACCAGT 59.011 50.000 2.24 0.00 34.57 4.00
968 3580 1.353022 TCTAATTCCGGCCAACCAGTT 59.647 47.619 2.24 0.00 34.57 3.16
970 3582 1.834188 AATTCCGGCCAACCAGTTAG 58.166 50.000 2.24 0.00 34.57 2.34
971 3583 0.988832 ATTCCGGCCAACCAGTTAGA 59.011 50.000 2.24 0.00 34.57 2.10
1168 5077 1.292223 GCTGTACCTCGCCAAGACA 59.708 57.895 0.00 0.00 0.00 3.41
1465 5377 2.415512 GGGTGCTTATGACTGTTCGAAC 59.584 50.000 21.42 21.42 0.00 3.95
1563 5476 7.452880 TGAATATATGCTAGGTTTGATTGGC 57.547 36.000 0.00 0.00 0.00 4.52
1589 5502 3.857052 CCACGAAATGTAGTTAGCCAGA 58.143 45.455 0.00 0.00 0.00 3.86
1594 5507 4.806247 CGAAATGTAGTTAGCCAGAGAAGG 59.194 45.833 0.00 0.00 0.00 3.46
1668 5581 4.010349 AGCTAGCATTTCGGCTTTTTAGT 58.990 39.130 18.83 0.00 42.71 2.24
1858 5771 6.231211 AGGGAACATCCGAACATATAACATC 58.769 40.000 0.00 0.00 37.43 3.06
1924 5854 6.932400 TGTTAATTCGACTTAGCCTTTTCTCA 59.068 34.615 6.87 0.00 0.00 3.27
1960 5890 6.620429 TCACTCATGGATCCCTACTGTTATA 58.380 40.000 9.90 0.00 0.00 0.98
2057 5989 1.066143 ACCCAAGATTACCACTCGCAG 60.066 52.381 0.00 0.00 0.00 5.18
2072 6004 3.316308 ACTCGCAGCAGAACTTTGAAAAT 59.684 39.130 0.00 0.00 0.00 1.82
2126 6060 3.056962 TCTGTGCTTGTTTTCAGTTGCAA 60.057 39.130 0.00 0.00 35.52 4.08
2276 6210 4.989279 AGGATGGATTGCACATAACAAC 57.011 40.909 0.00 0.00 0.00 3.32
2403 6337 2.956333 GGGCTGTTTGTTAGAAAGGTGT 59.044 45.455 0.00 0.00 0.00 4.16
2551 6485 7.775053 TTTTAGTTTATCATGCACCCTCTTT 57.225 32.000 0.00 0.00 0.00 2.52
2552 6486 8.871629 TTTTAGTTTATCATGCACCCTCTTTA 57.128 30.769 0.00 0.00 0.00 1.85
2755 6689 8.706322 AGGAACTTTGTTTACAACCTTCATAT 57.294 30.769 11.00 0.00 35.28 1.78
2973 7014 3.634397 TCTCAAATCCTACTTGCAGGG 57.366 47.619 0.00 0.00 36.26 4.45
2974 7015 2.912956 TCTCAAATCCTACTTGCAGGGT 59.087 45.455 0.00 0.00 36.26 4.34
2975 7016 4.101114 TCTCAAATCCTACTTGCAGGGTA 58.899 43.478 0.00 1.21 36.26 3.69
2976 7017 4.081087 TCTCAAATCCTACTTGCAGGGTAC 60.081 45.833 0.00 0.00 36.26 3.34
2977 7018 3.844211 TCAAATCCTACTTGCAGGGTACT 59.156 43.478 0.00 0.00 36.26 2.73
2978 7019 4.081087 TCAAATCCTACTTGCAGGGTACTC 60.081 45.833 0.00 0.00 36.26 2.59
2979 7020 1.861982 TCCTACTTGCAGGGTACTCC 58.138 55.000 0.00 0.00 36.26 3.85
2989 7030 3.204418 GGTACTCCCTCCGTTCGG 58.796 66.667 4.74 4.74 0.00 4.30
2990 7031 1.379044 GGTACTCCCTCCGTTCGGA 60.379 63.158 13.34 13.34 0.00 4.55
2991 7032 0.967380 GGTACTCCCTCCGTTCGGAA 60.967 60.000 14.79 0.04 33.41 4.30
2992 7033 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
2993 7034 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
2994 7035 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2995 7036 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2996 7037 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2997 7038 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2998 7039 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2999 7040 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3000 7041 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3001 7042 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
3002 7043 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
3003 7044 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
3004 7045 1.060122 GTTCGGAATTACTTGTCGCGG 59.940 52.381 6.13 0.00 0.00 6.46
3005 7046 0.527113 TCGGAATTACTTGTCGCGGA 59.473 50.000 6.13 0.00 0.00 5.54
3006 7047 1.067706 TCGGAATTACTTGTCGCGGAA 60.068 47.619 6.13 0.00 0.00 4.30
3007 7048 1.727880 CGGAATTACTTGTCGCGGAAA 59.272 47.619 6.13 0.00 0.00 3.13
3008 7049 2.350498 CGGAATTACTTGTCGCGGAAAT 59.650 45.455 6.13 0.00 0.00 2.17
3009 7050 3.680789 GGAATTACTTGTCGCGGAAATG 58.319 45.455 6.13 0.00 0.00 2.32
3010 7051 3.486875 GGAATTACTTGTCGCGGAAATGG 60.487 47.826 6.13 0.00 0.00 3.16
3011 7052 2.459060 TTACTTGTCGCGGAAATGGA 57.541 45.000 6.13 0.00 0.00 3.41
3012 7053 2.684001 TACTTGTCGCGGAAATGGAT 57.316 45.000 6.13 0.00 0.00 3.41
3013 7054 1.086696 ACTTGTCGCGGAAATGGATG 58.913 50.000 6.13 0.00 0.00 3.51
3014 7055 1.086696 CTTGTCGCGGAAATGGATGT 58.913 50.000 6.13 0.00 0.00 3.06
3015 7056 2.276201 CTTGTCGCGGAAATGGATGTA 58.724 47.619 6.13 0.00 0.00 2.29
3016 7057 2.613026 TGTCGCGGAAATGGATGTAT 57.387 45.000 6.13 0.00 0.00 2.29
3017 7058 2.479837 TGTCGCGGAAATGGATGTATC 58.520 47.619 6.13 0.00 0.00 2.24
3018 7059 2.102420 TGTCGCGGAAATGGATGTATCT 59.898 45.455 6.13 0.00 0.00 1.98
3019 7060 3.319689 TGTCGCGGAAATGGATGTATCTA 59.680 43.478 6.13 0.00 0.00 1.98
3020 7061 3.921021 GTCGCGGAAATGGATGTATCTAG 59.079 47.826 6.13 0.00 0.00 2.43
3021 7062 3.824443 TCGCGGAAATGGATGTATCTAGA 59.176 43.478 6.13 0.00 0.00 2.43
3022 7063 3.921021 CGCGGAAATGGATGTATCTAGAC 59.079 47.826 0.00 0.00 0.00 2.59
3023 7064 3.921021 GCGGAAATGGATGTATCTAGACG 59.079 47.826 0.00 0.00 0.00 4.18
3024 7065 4.558898 GCGGAAATGGATGTATCTAGACGT 60.559 45.833 0.00 0.00 0.00 4.34
3025 7066 5.335426 GCGGAAATGGATGTATCTAGACGTA 60.335 44.000 0.00 0.00 0.00 3.57
3026 7067 6.625300 GCGGAAATGGATGTATCTAGACGTAT 60.625 42.308 0.00 0.00 0.00 3.06
3027 7068 7.313646 CGGAAATGGATGTATCTAGACGTATT 58.686 38.462 0.00 0.00 0.00 1.89
3028 7069 7.813148 CGGAAATGGATGTATCTAGACGTATTT 59.187 37.037 0.00 0.00 0.00 1.40
3029 7070 9.490379 GGAAATGGATGTATCTAGACGTATTTT 57.510 33.333 0.00 0.00 0.00 1.82
3052 7093 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
3053 7094 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
3054 7095 6.750148 AGTTCTAGATACATCCATTTCCGAC 58.250 40.000 0.00 0.00 0.00 4.79
3055 7096 6.323996 AGTTCTAGATACATCCATTTCCGACA 59.676 38.462 0.00 0.00 0.00 4.35
3056 7097 6.085555 TCTAGATACATCCATTTCCGACAC 57.914 41.667 0.00 0.00 0.00 3.67
3057 7098 4.753516 AGATACATCCATTTCCGACACA 57.246 40.909 0.00 0.00 0.00 3.72
3058 7099 5.097742 AGATACATCCATTTCCGACACAA 57.902 39.130 0.00 0.00 0.00 3.33
3059 7100 5.118990 AGATACATCCATTTCCGACACAAG 58.881 41.667 0.00 0.00 0.00 3.16
3060 7101 3.140325 ACATCCATTTCCGACACAAGT 57.860 42.857 0.00 0.00 0.00 3.16
3061 7102 4.280436 ACATCCATTTCCGACACAAGTA 57.720 40.909 0.00 0.00 0.00 2.24
3062 7103 4.647611 ACATCCATTTCCGACACAAGTAA 58.352 39.130 0.00 0.00 0.00 2.24
3063 7104 5.253330 ACATCCATTTCCGACACAAGTAAT 58.747 37.500 0.00 0.00 0.00 1.89
3064 7105 5.710099 ACATCCATTTCCGACACAAGTAATT 59.290 36.000 0.00 0.00 0.00 1.40
3065 7106 5.873179 TCCATTTCCGACACAAGTAATTC 57.127 39.130 0.00 0.00 0.00 2.17
3066 7107 4.698304 TCCATTTCCGACACAAGTAATTCC 59.302 41.667 0.00 0.00 0.00 3.01
3067 7108 4.436852 CCATTTCCGACACAAGTAATTCCG 60.437 45.833 0.00 0.00 0.00 4.30
3068 7109 3.663995 TTCCGACACAAGTAATTCCGA 57.336 42.857 0.00 0.00 0.00 4.55
3069 7110 3.663995 TCCGACACAAGTAATTCCGAA 57.336 42.857 0.00 0.00 0.00 4.30
3070 7111 3.319755 TCCGACACAAGTAATTCCGAAC 58.680 45.455 0.00 0.00 0.00 3.95
3071 7112 2.091588 CCGACACAAGTAATTCCGAACG 59.908 50.000 0.00 0.00 0.00 3.95
3072 7113 2.091588 CGACACAAGTAATTCCGAACGG 59.908 50.000 6.94 6.94 0.00 4.44
3073 7114 3.319755 GACACAAGTAATTCCGAACGGA 58.680 45.455 12.04 12.04 43.52 4.69
3074 7115 3.323243 ACACAAGTAATTCCGAACGGAG 58.677 45.455 15.34 5.60 46.06 4.63
3075 7116 2.671396 CACAAGTAATTCCGAACGGAGG 59.329 50.000 15.34 4.52 46.06 4.30
3076 7117 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3077 7118 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3289 7330 2.866762 GCCTTAGCACTAACTCATTCCG 59.133 50.000 0.00 0.00 39.53 4.30
3324 7365 8.844244 AGAAATAGCTAGGACTATGCAATTTTG 58.156 33.333 0.00 0.00 33.12 2.44
3602 7643 1.179174 GGAAGCGCCAGAAAACCCTT 61.179 55.000 2.29 0.00 36.34 3.95
3748 7789 0.975040 AGCAACAAACCACCCAAGCA 60.975 50.000 0.00 0.00 0.00 3.91
3850 7891 2.445525 ACTCACCACATGTTAACCCCTT 59.554 45.455 2.48 0.00 0.00 3.95
3915 7956 3.771479 AGATTCCAGCAGACATCACTACA 59.229 43.478 0.00 0.00 0.00 2.74
3920 7961 1.134280 AGCAGACATCACTACATGGGC 60.134 52.381 0.00 0.00 0.00 5.36
3962 8003 6.749578 CAGGTCTACGATGTGAATATCTATGC 59.250 42.308 0.00 0.00 0.00 3.14
3966 8007 5.378292 ACGATGTGAATATCTATGCGTCT 57.622 39.130 0.00 0.00 0.00 4.18
4044 8492 3.214328 CACTTATTTTGGATCGGAGGGG 58.786 50.000 0.00 0.00 0.00 4.79
4054 8502 3.329520 TGGATCGGAGGGGGTAATATTTG 59.670 47.826 0.00 0.00 0.00 2.32
4087 8535 0.941463 ATACGCTGCGCTGCTGATAC 60.941 55.000 32.06 7.40 0.00 2.24
4197 8645 9.679661 TTACCTTAGCATCTCAATGTTGAAATA 57.320 29.630 0.00 0.00 36.64 1.40
4205 8656 7.600065 CATCTCAATGTTGAAATATGATCCCC 58.400 38.462 0.00 0.00 36.64 4.81
4225 8676 3.627577 CCCCTGATCCAAAATAAGTGTCG 59.372 47.826 0.00 0.00 0.00 4.35
4234 8685 5.066634 TCCAAAATAAGTGTCGCAGTTTTGA 59.933 36.000 16.09 6.08 38.26 2.69
4235 8686 5.746245 CCAAAATAAGTGTCGCAGTTTTGAA 59.254 36.000 16.09 0.00 38.26 2.69
4236 8687 6.291585 CCAAAATAAGTGTCGCAGTTTTGAAC 60.292 38.462 16.09 0.00 38.26 3.18
4237 8688 5.751243 AATAAGTGTCGCAGTTTTGAACT 57.249 34.783 5.46 0.00 44.06 3.01
4238 8689 6.854496 AATAAGTGTCGCAGTTTTGAACTA 57.146 33.333 5.46 0.00 40.46 2.24
4239 8690 6.854496 ATAAGTGTCGCAGTTTTGAACTAA 57.146 33.333 5.46 0.00 40.46 2.24
4240 8691 4.531659 AGTGTCGCAGTTTTGAACTAAC 57.468 40.909 0.00 0.00 40.46 2.34
4241 8692 3.311596 AGTGTCGCAGTTTTGAACTAACC 59.688 43.478 0.00 0.00 40.46 2.85
4242 8693 3.311596 GTGTCGCAGTTTTGAACTAACCT 59.688 43.478 0.00 0.00 40.46 3.50
4243 8694 3.942748 TGTCGCAGTTTTGAACTAACCTT 59.057 39.130 0.00 0.00 40.46 3.50
4244 8695 5.006941 GTGTCGCAGTTTTGAACTAACCTTA 59.993 40.000 0.00 0.00 40.46 2.69
4245 8696 5.235616 TGTCGCAGTTTTGAACTAACCTTAG 59.764 40.000 0.00 0.00 40.46 2.18
4246 8697 5.235831 GTCGCAGTTTTGAACTAACCTTAGT 59.764 40.000 0.00 0.00 45.43 2.24
4347 8798 8.256611 TCTTGTACTATTTGAAGCTGTGATTC 57.743 34.615 0.00 0.00 0.00 2.52
4475 8928 9.098355 TCTCGTTAAGATAAGATTGTGAATTGG 57.902 33.333 0.00 0.00 0.00 3.16
4745 9198 3.088532 AGTTGAGACTACAGCTGGAGAG 58.911 50.000 32.97 20.27 33.32 3.20
4898 9351 7.501225 ACTTGTTTAAAGCCTTTTCTGTAGCTA 59.499 33.333 0.00 0.00 34.49 3.32
4942 9415 4.839121 ACGACCATTAAAAGATGCCTACA 58.161 39.130 0.00 0.00 0.00 2.74
4956 9429 5.594317 AGATGCCTACAAGTTTCAGTTTTGT 59.406 36.000 0.00 0.00 38.48 2.83
5003 9476 2.224769 CCTGCCTTTTCTTGGGTCAGTA 60.225 50.000 0.00 0.00 0.00 2.74
5035 9508 9.624697 CTTTGCAATGCTTGTAGACTTTATTAA 57.375 29.630 6.82 0.00 0.00 1.40
5244 9717 2.412847 GCTTCATGTTTGTCGTGCTACC 60.413 50.000 0.00 0.00 33.44 3.18
5268 9741 5.692204 CGGACAAGAGCTGGTATAATACTTG 59.308 44.000 0.00 0.00 39.02 3.16
5285 9758 7.961326 AATACTTGCCAATTTCCATTAGAGT 57.039 32.000 0.00 0.00 0.00 3.24
5410 9883 9.844790 CATTGAATTTTGCTTACTGATAACAGA 57.155 29.630 7.05 0.00 46.03 3.41
5442 9915 5.918011 TCAAATCAAAACAGCATTTACCGTC 59.082 36.000 0.00 0.00 0.00 4.79
5514 10039 7.874940 ACGACAAAATCTCATGAGATGAAAAA 58.125 30.769 33.48 9.58 46.75 1.94
5676 10201 6.980577 TCCATGGTTAAAGGTAGGAAATGAT 58.019 36.000 12.58 0.00 0.00 2.45
5705 10232 5.990668 ACTCAATAGCGGGATTTTCTTACT 58.009 37.500 0.00 0.00 0.00 2.24
5867 10394 6.834168 TTCAAGGTCAGTTCAAACTTCTTT 57.166 33.333 0.00 0.00 37.08 2.52
5878 10405 8.633561 CAGTTCAAACTTCTTTCCTAGGAATTT 58.366 33.333 24.82 17.76 37.08 1.82
5943 10474 3.322828 ACTTTACAGGCGGACAGTTTAGA 59.677 43.478 0.00 0.00 0.00 2.10
5981 10512 1.542915 CCTGGCATGTGGTTTCTCTTG 59.457 52.381 0.00 0.00 0.00 3.02
6014 10545 9.921637 TTTAATGTGTAATTTCATGTTCTTCCC 57.078 29.630 0.00 0.00 0.00 3.97
6017 10548 4.075682 TGTAATTTCATGTTCTTCCCGCA 58.924 39.130 0.00 0.00 0.00 5.69
6275 10816 4.411212 TGATCTGAACCATGGATGACATCT 59.589 41.667 21.47 3.16 37.84 2.90
6276 10817 4.146745 TCTGAACCATGGATGACATCTG 57.853 45.455 21.47 6.56 37.84 2.90
6284 10825 5.191426 CCATGGATGACATCTGAACTCTTT 58.809 41.667 5.56 0.00 37.84 2.52
6339 10880 2.935481 GTACACTTGTACTCCCTCCG 57.065 55.000 11.56 0.00 45.47 4.63
6340 10881 2.165998 GTACACTTGTACTCCCTCCGT 58.834 52.381 11.56 0.00 45.47 4.69
6341 10882 1.254954 ACACTTGTACTCCCTCCGTC 58.745 55.000 0.00 0.00 0.00 4.79
6342 10883 0.531200 CACTTGTACTCCCTCCGTCC 59.469 60.000 0.00 0.00 0.00 4.79
6343 10884 0.964358 ACTTGTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
6344 10885 0.679002 CTTGTACTCCCTCCGTCCGA 60.679 60.000 0.00 0.00 0.00 4.55
6345 10886 0.251297 TTGTACTCCCTCCGTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
6346 10887 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
6347 10888 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
6348 10889 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
6349 10890 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
6350 10891 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
6351 10892 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
6352 10893 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
6353 10894 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
6354 10895 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
6355 10896 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
6356 10897 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
6357 10898 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
6358 10899 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
6359 10900 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
6360 10901 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
6361 10902 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
6362 10903 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
6363 10904 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
6364 10905 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
6365 10906 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
6366 10907 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
6367 10908 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
6375 10916 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
6406 10947 9.632807 ATCTCGAACTAAAATATGTCTAGATGC 57.367 33.333 0.00 0.00 0.00 3.91
6407 10948 8.630037 TCTCGAACTAAAATATGTCTAGATGCA 58.370 33.333 0.00 0.00 0.00 3.96
6408 10949 9.416794 CTCGAACTAAAATATGTCTAGATGCAT 57.583 33.333 0.00 0.00 0.00 3.96
6409 10950 9.411801 TCGAACTAAAATATGTCTAGATGCATC 57.588 33.333 19.37 19.37 0.00 3.91
6410 10951 8.651588 CGAACTAAAATATGTCTAGATGCATCC 58.348 37.037 23.06 8.35 0.00 3.51
6411 10952 8.854614 AACTAAAATATGTCTAGATGCATCCC 57.145 34.615 23.06 9.38 0.00 3.85
6412 10953 7.398024 ACTAAAATATGTCTAGATGCATCCCC 58.602 38.462 23.06 9.04 0.00 4.81
6413 10954 6.460103 AAAATATGTCTAGATGCATCCCCT 57.540 37.500 23.06 7.62 0.00 4.79
6414 10955 6.460103 AAATATGTCTAGATGCATCCCCTT 57.540 37.500 23.06 7.24 0.00 3.95
6415 10956 6.460103 AATATGTCTAGATGCATCCCCTTT 57.540 37.500 23.06 6.85 0.00 3.11
6416 10957 4.803329 ATGTCTAGATGCATCCCCTTTT 57.197 40.909 23.06 6.10 0.00 2.27
6417 10958 5.912149 ATGTCTAGATGCATCCCCTTTTA 57.088 39.130 23.06 6.97 0.00 1.52
6418 10959 5.912149 TGTCTAGATGCATCCCCTTTTAT 57.088 39.130 23.06 4.58 0.00 1.40
6419 10960 5.869579 TGTCTAGATGCATCCCCTTTTATC 58.130 41.667 23.06 5.36 0.00 1.75
6420 10961 5.221925 TGTCTAGATGCATCCCCTTTTATCC 60.222 44.000 23.06 2.63 0.00 2.59
6421 10962 4.913355 TCTAGATGCATCCCCTTTTATCCA 59.087 41.667 23.06 0.00 0.00 3.41
6422 10963 4.754411 AGATGCATCCCCTTTTATCCAT 57.246 40.909 23.06 0.00 0.00 3.41
6423 10964 5.083953 AGATGCATCCCCTTTTATCCATT 57.916 39.130 23.06 0.00 0.00 3.16
6424 10965 5.470501 AGATGCATCCCCTTTTATCCATTT 58.529 37.500 23.06 0.00 0.00 2.32
6425 10966 5.907079 AGATGCATCCCCTTTTATCCATTTT 59.093 36.000 23.06 0.00 0.00 1.82
6426 10967 5.356291 TGCATCCCCTTTTATCCATTTTG 57.644 39.130 0.00 0.00 0.00 2.44
6427 10968 5.028802 TGCATCCCCTTTTATCCATTTTGA 58.971 37.500 0.00 0.00 0.00 2.69
6428 10969 5.666718 TGCATCCCCTTTTATCCATTTTGAT 59.333 36.000 0.00 0.00 0.00 2.57
6429 10970 5.993441 GCATCCCCTTTTATCCATTTTGATG 59.007 40.000 0.00 0.00 0.00 3.07
6430 10971 6.183360 GCATCCCCTTTTATCCATTTTGATGA 60.183 38.462 0.00 0.00 0.00 2.92
6431 10972 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
6432 10973 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
6433 10974 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
6434 10975 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
6435 10976 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
6436 10977 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
6443 10984 7.829725 TCCATTTTGATGACAAGTATTTCTGG 58.170 34.615 0.00 0.00 37.32 3.86
6444 10985 6.532657 CCATTTTGATGACAAGTATTTCTGGC 59.467 38.462 0.00 0.00 37.32 4.85
6445 10986 4.944962 TTGATGACAAGTATTTCTGGCG 57.055 40.909 0.00 0.00 0.00 5.69
6446 10987 3.270027 TGATGACAAGTATTTCTGGCGG 58.730 45.455 0.00 0.00 0.00 6.13
6447 10988 3.055458 TGATGACAAGTATTTCTGGCGGA 60.055 43.478 0.00 0.00 0.00 5.54
6448 10989 2.972625 TGACAAGTATTTCTGGCGGAG 58.027 47.619 0.00 0.00 0.00 4.63
6449 10990 2.280628 GACAAGTATTTCTGGCGGAGG 58.719 52.381 0.00 0.00 0.00 4.30
6450 10991 1.065418 ACAAGTATTTCTGGCGGAGGG 60.065 52.381 0.00 0.00 0.00 4.30
6451 10992 1.209504 CAAGTATTTCTGGCGGAGGGA 59.790 52.381 0.00 0.00 0.00 4.20
6452 10993 1.123928 AGTATTTCTGGCGGAGGGAG 58.876 55.000 0.00 0.00 0.00 4.30
6453 10994 0.831307 GTATTTCTGGCGGAGGGAGT 59.169 55.000 0.00 0.00 0.00 3.85
6454 10995 2.037144 GTATTTCTGGCGGAGGGAGTA 58.963 52.381 0.00 0.00 0.00 2.59
6455 10996 1.123928 ATTTCTGGCGGAGGGAGTAG 58.876 55.000 0.00 0.00 0.00 2.57
6472 11013 4.441079 GGAGTAGTTATTTACGGCAGCAGA 60.441 45.833 0.00 0.00 0.00 4.26
6473 11014 4.683832 AGTAGTTATTTACGGCAGCAGAG 58.316 43.478 0.00 0.00 0.00 3.35
6500 11041 7.853377 TGATATCGTGCTCTTATAACTTTCG 57.147 36.000 0.00 0.00 0.00 3.46
6606 11147 7.392113 TCTGTTCTTTCTGTTTCTGGTTTTGTA 59.608 33.333 0.00 0.00 0.00 2.41
6609 11150 9.366216 GTTCTTTCTGTTTCTGGTTTTGTATTT 57.634 29.630 0.00 0.00 0.00 1.40
6717 11258 5.351189 CCGAATCTGTAATGTGACATTGTCA 59.649 40.000 20.29 15.41 40.50 3.58
6805 11346 4.563580 GGCGCCTCTTCCATGATTTATAGA 60.564 45.833 22.15 0.00 0.00 1.98
6926 11550 3.633986 TGCAGAGATCACACGAGATACAT 59.366 43.478 0.00 0.00 0.00 2.29
7081 11706 3.006752 TGCATTGGTCCTTGTTCATTTCC 59.993 43.478 0.00 0.00 0.00 3.13
7082 11707 3.836949 CATTGGTCCTTGTTCATTTCCG 58.163 45.455 0.00 0.00 0.00 4.30
7213 11838 6.174720 AGTACCTTTGAGTGTCATCTGAAA 57.825 37.500 0.00 0.00 0.00 2.69
7337 11962 5.410439 GGCAGACGTTTAAGAAAGATAACCA 59.590 40.000 0.00 0.00 0.00 3.67
7571 12205 2.871633 CAAATTTTGGCAAAGTTCGGCT 59.128 40.909 19.14 3.16 27.60 5.52
7689 12386 2.254703 CTGAACGCCGAGTAGTCGCT 62.255 60.000 14.65 0.00 45.41 4.93
7691 12388 3.966026 AACGCCGAGTAGTCGCTGC 62.966 63.158 14.65 12.13 45.41 5.25
7694 12391 3.812019 CCGAGTAGTCGCTGCCGT 61.812 66.667 14.65 0.00 45.41 5.68
7695 12392 2.277373 CGAGTAGTCGCTGCCGTC 60.277 66.667 7.09 0.00 39.88 4.79
7696 12393 2.277373 GAGTAGTCGCTGCCGTCG 60.277 66.667 0.00 0.00 35.54 5.12
7699 12396 3.051479 TAGTCGCTGCCGTCGTCA 61.051 61.111 0.00 0.00 35.54 4.35
7938 12694 2.323447 CGCGTCATCGTCGAGCTA 59.677 61.111 0.00 0.00 38.23 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.998033 GGTGTTGTTGGGTTTCTTCAAAAA 59.002 37.500 0.00 0.00 0.00 1.94
34 35 3.517602 GTTGGTGTTGTTGGGTTTCTTC 58.482 45.455 0.00 0.00 0.00 2.87
63 64 3.670377 GAGGGTTGGCGCGCTTTT 61.670 61.111 32.29 10.84 0.00 2.27
68 69 4.379243 ACTCAGAGGGTTGGCGCG 62.379 66.667 0.00 0.00 0.00 6.86
69 70 2.527951 ATCACTCAGAGGGTTGGCGC 62.528 60.000 0.00 0.00 0.00 6.53
111 113 5.106712 TGTTTAGCTCGGAATCATTGAACAC 60.107 40.000 0.00 0.00 0.00 3.32
190 193 7.279615 TGAGATATATGGGGGCGTAAATAATG 58.720 38.462 0.00 0.00 0.00 1.90
191 194 7.446106 TGAGATATATGGGGGCGTAAATAAT 57.554 36.000 0.00 0.00 0.00 1.28
199 202 6.260936 GTGAATTAATGAGATATATGGGGGCG 59.739 42.308 0.00 0.00 0.00 6.13
238 2807 4.635223 TCCCAGAAAATATGATGAGAGCG 58.365 43.478 0.00 0.00 0.00 5.03
320 2889 4.061131 TGGATTGAAGAGGTAGGAGTGA 57.939 45.455 0.00 0.00 0.00 3.41
330 2899 9.258826 CTCAGTATATGTCTTTGGATTGAAGAG 57.741 37.037 0.00 0.00 34.05 2.85
503 3097 9.624697 TTTGTGCATATCTTCAAGTTCATAAAC 57.375 29.630 0.00 0.00 35.50 2.01
600 3195 9.881529 TTTTATTTTCAATTTTTCTCTGCATGC 57.118 25.926 11.82 11.82 0.00 4.06
640 3235 6.930667 TGTGTAGGTCTAGTTTGGTTTTTC 57.069 37.500 0.00 0.00 0.00 2.29
654 3256 3.564225 CCACTTCTGGTTTTGTGTAGGTC 59.436 47.826 0.00 0.00 32.03 3.85
675 3277 3.518590 CACCCAAGTGTTACTATCGTCC 58.481 50.000 0.00 0.00 39.30 4.79
676 3278 3.194116 TCCACCCAAGTGTTACTATCGTC 59.806 47.826 0.00 0.00 42.88 4.20
677 3279 3.167485 TCCACCCAAGTGTTACTATCGT 58.833 45.455 0.00 0.00 42.88 3.73
679 3281 5.557866 ACTTTCCACCCAAGTGTTACTATC 58.442 41.667 0.00 0.00 42.88 2.08
680 3282 5.578157 ACTTTCCACCCAAGTGTTACTAT 57.422 39.130 0.00 0.00 42.88 2.12
681 3283 5.840149 TCTACTTTCCACCCAAGTGTTACTA 59.160 40.000 0.00 0.00 42.88 1.82
725 3335 1.432270 GCGAGCTTTTCTATGCCGCT 61.432 55.000 3.70 0.00 41.71 5.52
735 3345 1.594331 AGAGGAAAACGCGAGCTTTT 58.406 45.000 15.93 9.70 28.00 2.27
762 3374 5.108385 AGCGTGTGGATGAAAAGTAAAAG 57.892 39.130 0.00 0.00 0.00 2.27
858 3470 5.814705 GTGACGAATGAAAAGGATGAGAGAT 59.185 40.000 0.00 0.00 0.00 2.75
864 3476 5.808042 AGATGTGACGAATGAAAAGGATG 57.192 39.130 0.00 0.00 0.00 3.51
868 3480 7.022979 TGCAATTAGATGTGACGAATGAAAAG 58.977 34.615 0.00 0.00 0.00 2.27
869 3481 6.907741 TGCAATTAGATGTGACGAATGAAAA 58.092 32.000 0.00 0.00 0.00 2.29
871 3483 6.314018 GTTGCAATTAGATGTGACGAATGAA 58.686 36.000 0.59 0.00 0.00 2.57
872 3484 5.445806 CGTTGCAATTAGATGTGACGAATGA 60.446 40.000 0.59 0.00 34.76 2.57
873 3485 4.725280 CGTTGCAATTAGATGTGACGAATG 59.275 41.667 0.59 0.00 34.76 2.67
874 3486 4.201812 CCGTTGCAATTAGATGTGACGAAT 60.202 41.667 0.59 0.00 34.76 3.34
875 3487 3.124466 CCGTTGCAATTAGATGTGACGAA 59.876 43.478 0.59 0.00 34.76 3.85
876 3488 2.670905 CCGTTGCAATTAGATGTGACGA 59.329 45.455 0.59 0.00 34.76 4.20
877 3489 2.787723 GCCGTTGCAATTAGATGTGACG 60.788 50.000 0.59 0.00 37.47 4.35
878 3490 2.161410 TGCCGTTGCAATTAGATGTGAC 59.839 45.455 0.59 0.00 46.66 3.67
879 3491 2.431454 TGCCGTTGCAATTAGATGTGA 58.569 42.857 0.59 0.00 46.66 3.58
880 3492 2.917701 TGCCGTTGCAATTAGATGTG 57.082 45.000 0.59 0.00 46.66 3.21
892 3504 0.871163 CACAGCTTGGTTTGCCGTTG 60.871 55.000 0.00 0.00 37.67 4.10
895 3507 2.336088 CCACAGCTTGGTTTGCCG 59.664 61.111 6.74 0.00 41.10 5.69
903 3515 1.331214 AACCATCCAACCACAGCTTG 58.669 50.000 0.00 0.00 0.00 4.01
905 3517 1.985159 TCTAACCATCCAACCACAGCT 59.015 47.619 0.00 0.00 0.00 4.24
906 3518 2.359900 CTCTAACCATCCAACCACAGC 58.640 52.381 0.00 0.00 0.00 4.40
907 3519 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
908 3520 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
909 3521 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
910 3522 1.913419 GTCCCTCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
912 3524 3.456277 AGATGTCCCTCTAACCATCCAAC 59.544 47.826 0.00 0.00 35.42 3.77
913 3525 3.455910 CAGATGTCCCTCTAACCATCCAA 59.544 47.826 0.00 0.00 35.42 3.53
914 3526 3.041211 CAGATGTCCCTCTAACCATCCA 58.959 50.000 0.00 0.00 35.42 3.41
915 3527 3.041946 ACAGATGTCCCTCTAACCATCC 58.958 50.000 0.00 0.00 35.42 3.51
916 3528 6.426646 AATACAGATGTCCCTCTAACCATC 57.573 41.667 0.00 0.00 35.13 3.51
917 3529 7.931015 TTAATACAGATGTCCCTCTAACCAT 57.069 36.000 0.00 0.00 0.00 3.55
918 3530 7.743116 TTTAATACAGATGTCCCTCTAACCA 57.257 36.000 0.00 0.00 0.00 3.67
943 3555 3.835395 TGGTTGGCCGGAATTAGATTTTT 59.165 39.130 5.05 0.00 37.67 1.94
944 3556 3.436243 TGGTTGGCCGGAATTAGATTTT 58.564 40.909 5.05 0.00 37.67 1.82
945 3557 3.023832 CTGGTTGGCCGGAATTAGATTT 58.976 45.455 5.05 0.00 43.97 2.17
946 3558 2.025321 ACTGGTTGGCCGGAATTAGATT 60.025 45.455 5.05 0.00 43.97 2.40
947 3559 1.564348 ACTGGTTGGCCGGAATTAGAT 59.436 47.619 5.05 0.00 43.97 1.98
948 3560 0.988832 ACTGGTTGGCCGGAATTAGA 59.011 50.000 5.05 0.00 43.97 2.10
950 3562 2.572556 TCTAACTGGTTGGCCGGAATTA 59.427 45.455 5.05 0.00 43.97 1.40
951 3563 1.353022 TCTAACTGGTTGGCCGGAATT 59.647 47.619 5.05 0.00 43.97 2.17
952 3564 0.988832 TCTAACTGGTTGGCCGGAAT 59.011 50.000 5.05 0.00 43.97 3.01
953 3565 0.766131 TTCTAACTGGTTGGCCGGAA 59.234 50.000 5.05 0.00 43.97 4.30
954 3566 0.766131 TTTCTAACTGGTTGGCCGGA 59.234 50.000 5.05 0.00 43.97 5.14
955 3567 1.611519 TTTTCTAACTGGTTGGCCGG 58.388 50.000 0.00 0.00 46.63 6.13
1168 5077 2.184322 CTATGGTGCAGACGCGGT 59.816 61.111 12.47 0.00 42.97 5.68
1465 5377 2.219903 TGTAACGCACGAACAGACATTG 59.780 45.455 0.00 0.00 0.00 2.82
1563 5476 1.722011 AACTACATTTCGTGGCCTCG 58.278 50.000 20.92 20.92 0.00 4.63
1589 5502 6.959361 CAAATATTGCGTATTACTGCCTTCT 58.041 36.000 0.00 0.00 32.70 2.85
1623 5536 2.866028 CGGCAGCAGAAGCAACTC 59.134 61.111 0.00 0.00 45.49 3.01
1649 5562 6.079424 ACAAACTAAAAAGCCGAAATGCTA 57.921 33.333 0.00 0.00 41.80 3.49
1652 5565 7.227992 TCAAACAAACTAAAAAGCCGAAATG 57.772 32.000 0.00 0.00 0.00 2.32
1659 5572 7.042791 TGCAGCTAATCAAACAAACTAAAAAGC 60.043 33.333 0.00 0.00 0.00 3.51
1668 5581 6.088016 AGTCATTGCAGCTAATCAAACAAA 57.912 33.333 0.00 0.00 0.00 2.83
1795 5708 2.884012 CAGTACATCACAACCCAGCAAA 59.116 45.455 0.00 0.00 0.00 3.68
1858 5771 7.861372 AGTTATCAAGTCGATTATTCAGGTACG 59.139 37.037 0.00 0.00 35.39 3.67
1924 5854 5.688814 TCCATGAGTGAGAATTCTGATGT 57.311 39.130 14.00 0.00 0.00 3.06
1960 5890 4.346127 TGCCAGTATATCTCAGCTCATTGT 59.654 41.667 0.00 0.00 0.00 2.71
2057 5989 8.758715 GGCATATATTCATTTTCAAAGTTCTGC 58.241 33.333 0.00 0.00 0.00 4.26
2126 6060 0.607489 GTTGTGTGCATCCTGGAGCT 60.607 55.000 15.75 0.00 0.00 4.09
2190 6124 6.699204 TGCGATTCTTAGCTTCTAAGATCAAG 59.301 38.462 14.75 9.39 34.02 3.02
2276 6210 1.500108 TGCAAGGCAAATTTTCTGCG 58.500 45.000 0.00 0.00 40.88 5.18
2346 6280 4.330074 CACTTAACTGCCTGAGAAATACCG 59.670 45.833 0.00 0.00 0.00 4.02
2350 6284 6.059787 AGATCACTTAACTGCCTGAGAAAT 57.940 37.500 0.00 0.00 0.00 2.17
2403 6337 4.525487 ACTTGTCGTGTTCCAATACCTAGA 59.475 41.667 0.00 0.00 0.00 2.43
2509 6443 7.435068 ACTAAAATCAAATACGCAGACAGTT 57.565 32.000 0.00 0.00 0.00 3.16
2699 6633 4.534103 AGAAAAGGGAGTTCTGCTACAGAT 59.466 41.667 0.00 0.00 40.39 2.90
2883 6924 8.429641 CCTTATTTAAACAGCTATCAGGGAGTA 58.570 37.037 0.00 0.00 0.00 2.59
2888 6929 7.173390 GGTAGCCTTATTTAAACAGCTATCAGG 59.827 40.741 12.51 0.00 34.74 3.86
2973 7014 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
2974 7015 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2975 7016 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2976 7017 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2977 7018 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2978 7019 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2979 7020 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2980 7021 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
2981 7022 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
2982 7023 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
2983 7024 1.266211 CGCGACAAGTAATTCCGAACG 60.266 52.381 0.00 0.00 0.00 3.95
2984 7025 1.060122 CCGCGACAAGTAATTCCGAAC 59.940 52.381 8.23 0.00 0.00 3.95
2985 7026 1.067706 TCCGCGACAAGTAATTCCGAA 60.068 47.619 8.23 0.00 0.00 4.30
2986 7027 0.527113 TCCGCGACAAGTAATTCCGA 59.473 50.000 8.23 0.00 0.00 4.55
2987 7028 1.352114 TTCCGCGACAAGTAATTCCG 58.648 50.000 8.23 0.00 0.00 4.30
2988 7029 3.486875 CCATTTCCGCGACAAGTAATTCC 60.487 47.826 8.23 0.00 0.00 3.01
2989 7030 3.372822 TCCATTTCCGCGACAAGTAATTC 59.627 43.478 8.23 0.00 0.00 2.17
2990 7031 3.340034 TCCATTTCCGCGACAAGTAATT 58.660 40.909 8.23 0.00 0.00 1.40
2991 7032 2.980568 TCCATTTCCGCGACAAGTAAT 58.019 42.857 8.23 0.00 0.00 1.89
2992 7033 2.459060 TCCATTTCCGCGACAAGTAA 57.541 45.000 8.23 0.00 0.00 2.24
2993 7034 2.276201 CATCCATTTCCGCGACAAGTA 58.724 47.619 8.23 0.00 0.00 2.24
2994 7035 1.086696 CATCCATTTCCGCGACAAGT 58.913 50.000 8.23 0.00 0.00 3.16
2995 7036 1.086696 ACATCCATTTCCGCGACAAG 58.913 50.000 8.23 0.00 0.00 3.16
2996 7037 2.388310 TACATCCATTTCCGCGACAA 57.612 45.000 8.23 0.00 0.00 3.18
2997 7038 2.102420 AGATACATCCATTTCCGCGACA 59.898 45.455 8.23 0.00 0.00 4.35
2998 7039 2.755650 AGATACATCCATTTCCGCGAC 58.244 47.619 8.23 0.00 0.00 5.19
2999 7040 3.824443 TCTAGATACATCCATTTCCGCGA 59.176 43.478 8.23 0.00 0.00 5.87
3000 7041 3.921021 GTCTAGATACATCCATTTCCGCG 59.079 47.826 0.00 0.00 0.00 6.46
3001 7042 3.921021 CGTCTAGATACATCCATTTCCGC 59.079 47.826 0.00 0.00 0.00 5.54
3002 7043 5.122512 ACGTCTAGATACATCCATTTCCG 57.877 43.478 0.00 0.00 0.00 4.30
3003 7044 9.490379 AAAATACGTCTAGATACATCCATTTCC 57.510 33.333 0.00 0.00 0.00 3.13
3026 7067 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
3027 7068 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
3028 7069 8.358148 GTCGGAAATGGATGTATCTAGAACTAA 58.642 37.037 0.00 0.00 0.00 2.24
3029 7070 7.504574 TGTCGGAAATGGATGTATCTAGAACTA 59.495 37.037 0.00 0.00 0.00 2.24
3030 7071 6.323996 TGTCGGAAATGGATGTATCTAGAACT 59.676 38.462 0.00 0.00 0.00 3.01
3031 7072 6.421202 GTGTCGGAAATGGATGTATCTAGAAC 59.579 42.308 0.00 0.00 0.00 3.01
3032 7073 6.097696 TGTGTCGGAAATGGATGTATCTAGAA 59.902 38.462 0.00 0.00 0.00 2.10
3033 7074 5.596772 TGTGTCGGAAATGGATGTATCTAGA 59.403 40.000 0.00 0.00 0.00 2.43
3034 7075 5.842907 TGTGTCGGAAATGGATGTATCTAG 58.157 41.667 0.00 0.00 0.00 2.43
3035 7076 5.862678 TGTGTCGGAAATGGATGTATCTA 57.137 39.130 0.00 0.00 0.00 1.98
3036 7077 4.753516 TGTGTCGGAAATGGATGTATCT 57.246 40.909 0.00 0.00 0.00 1.98
3037 7078 4.876107 ACTTGTGTCGGAAATGGATGTATC 59.124 41.667 0.00 0.00 0.00 2.24
3038 7079 4.843728 ACTTGTGTCGGAAATGGATGTAT 58.156 39.130 0.00 0.00 0.00 2.29
3039 7080 4.280436 ACTTGTGTCGGAAATGGATGTA 57.720 40.909 0.00 0.00 0.00 2.29
3040 7081 3.140325 ACTTGTGTCGGAAATGGATGT 57.860 42.857 0.00 0.00 0.00 3.06
3041 7082 5.818136 ATTACTTGTGTCGGAAATGGATG 57.182 39.130 0.00 0.00 0.00 3.51
3042 7083 5.357032 GGAATTACTTGTGTCGGAAATGGAT 59.643 40.000 0.00 0.00 0.00 3.41
3043 7084 4.698304 GGAATTACTTGTGTCGGAAATGGA 59.302 41.667 0.00 0.00 0.00 3.41
3044 7085 4.436852 CGGAATTACTTGTGTCGGAAATGG 60.437 45.833 0.00 0.00 0.00 3.16
3045 7086 4.390603 TCGGAATTACTTGTGTCGGAAATG 59.609 41.667 0.00 0.00 0.00 2.32
3046 7087 4.571919 TCGGAATTACTTGTGTCGGAAAT 58.428 39.130 0.00 0.00 0.00 2.17
3047 7088 3.992643 TCGGAATTACTTGTGTCGGAAA 58.007 40.909 0.00 0.00 0.00 3.13
3048 7089 3.663995 TCGGAATTACTTGTGTCGGAA 57.336 42.857 0.00 0.00 0.00 4.30
3049 7090 3.319755 GTTCGGAATTACTTGTGTCGGA 58.680 45.455 0.00 0.00 0.00 4.55
3050 7091 2.091588 CGTTCGGAATTACTTGTGTCGG 59.908 50.000 0.00 0.00 0.00 4.79
3051 7092 2.091588 CCGTTCGGAATTACTTGTGTCG 59.908 50.000 5.19 0.00 0.00 4.35
3052 7093 3.319755 TCCGTTCGGAATTACTTGTGTC 58.680 45.455 11.66 0.00 0.00 3.67
3053 7094 3.323243 CTCCGTTCGGAATTACTTGTGT 58.677 45.455 14.79 0.00 33.41 3.72
3054 7095 2.671396 CCTCCGTTCGGAATTACTTGTG 59.329 50.000 14.79 0.64 33.41 3.33
3055 7096 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3056 7097 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3057 7098 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3058 7099 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3059 7100 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3060 7101 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3061 7102 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
3062 7103 1.400737 CTACTCCCTCCGTTCGGAAT 58.599 55.000 14.79 2.09 33.41 3.01
3063 7104 0.682209 CCTACTCCCTCCGTTCGGAA 60.682 60.000 14.79 0.04 33.41 4.30
3064 7105 1.077212 CCTACTCCCTCCGTTCGGA 60.077 63.158 13.34 13.34 0.00 4.55
3065 7106 0.969409 AACCTACTCCCTCCGTTCGG 60.969 60.000 4.74 4.74 0.00 4.30
3066 7107 0.455005 GAACCTACTCCCTCCGTTCG 59.545 60.000 0.00 0.00 0.00 3.95
3067 7108 1.849977 AGAACCTACTCCCTCCGTTC 58.150 55.000 0.00 0.00 34.40 3.95
3068 7109 2.322339 AAGAACCTACTCCCTCCGTT 57.678 50.000 0.00 0.00 0.00 4.44
3069 7110 2.622714 GGTAAGAACCTACTCCCTCCGT 60.623 54.545 0.00 0.00 43.08 4.69
3070 7111 2.030371 GGTAAGAACCTACTCCCTCCG 58.970 57.143 0.00 0.00 43.08 4.63
3071 7112 2.765135 GTGGTAAGAACCTACTCCCTCC 59.235 54.545 0.00 0.00 46.91 4.30
3072 7113 3.710724 AGTGGTAAGAACCTACTCCCTC 58.289 50.000 0.00 0.00 46.91 4.30
3073 7114 3.848978 AGTGGTAAGAACCTACTCCCT 57.151 47.619 0.00 0.00 46.91 4.20
3074 7115 4.608269 AGTAGTGGTAAGAACCTACTCCC 58.392 47.826 0.00 0.00 46.91 4.30
3075 7116 6.602410 AAAGTAGTGGTAAGAACCTACTCC 57.398 41.667 0.00 0.00 46.91 3.85
3076 7117 7.440198 ACAAAAGTAGTGGTAAGAACCTACTC 58.560 38.462 0.00 0.00 46.91 2.59
3077 7118 7.370905 ACAAAAGTAGTGGTAAGAACCTACT 57.629 36.000 0.00 0.00 46.91 2.57
3289 7330 7.326968 AGTCCTAGCTATTTCTTTCATTTGC 57.673 36.000 0.00 0.00 0.00 3.68
3305 7346 4.884164 AGGTCAAAATTGCATAGTCCTAGC 59.116 41.667 0.00 0.00 0.00 3.42
3324 7365 4.222366 ACCACAACTAGGCTAAAGTAGGTC 59.778 45.833 0.00 0.00 0.00 3.85
3709 7750 3.141398 CTCACAGGTAGCAGCTCAAAAA 58.859 45.455 0.00 0.00 0.00 1.94
3850 7891 4.395854 GGATACACATTGCAAGATCACACA 59.604 41.667 4.94 0.00 0.00 3.72
3896 7937 3.369787 CCATGTAGTGATGTCTGCTGGAA 60.370 47.826 0.00 0.00 0.00 3.53
3915 7956 3.388350 GCTAGTGAGGTAAAGTAGCCCAT 59.612 47.826 0.00 0.00 39.61 4.00
3920 7961 4.951094 AGACCTGCTAGTGAGGTAAAGTAG 59.049 45.833 13.79 0.00 44.28 2.57
3962 8003 6.214399 AGGACAGTAACTAAAACAGAAGACG 58.786 40.000 0.00 0.00 0.00 4.18
3966 8007 9.706691 CTTCATAGGACAGTAACTAAAACAGAA 57.293 33.333 0.00 0.00 0.00 3.02
4054 8502 6.961358 CGCAGCGTATTATAGATACAGATC 57.039 41.667 6.65 0.00 0.00 2.75
4087 8535 0.744874 CAATTCAGGCATGGGCAGAG 59.255 55.000 0.00 0.00 43.71 3.35
4205 8656 3.689161 TGCGACACTTATTTTGGATCAGG 59.311 43.478 0.00 0.00 0.00 3.86
4347 8798 5.107104 TGCGAACTGTATTGTAAAAGCAGAG 60.107 40.000 6.92 0.00 35.91 3.35
4745 9198 2.730672 GCGCGTGAGATGTGACACC 61.731 63.158 8.43 0.00 34.05 4.16
4921 9394 5.354234 ACTTGTAGGCATCTTTTAATGGTCG 59.646 40.000 0.00 0.00 0.00 4.79
4942 9415 8.835439 ACAAAACAAATCACAAAACTGAAACTT 58.165 25.926 0.00 0.00 0.00 2.66
5244 9717 5.455056 AGTATTATACCAGCTCTTGTCCG 57.545 43.478 0.00 0.00 0.00 4.79
5285 9758 8.760735 TGCTAACCAAGTAACCAGTAATATACA 58.239 33.333 0.00 0.00 0.00 2.29
5295 9768 4.258543 GCTACATGCTAACCAAGTAACCA 58.741 43.478 0.00 0.00 38.95 3.67
5296 9769 3.308866 CGCTACATGCTAACCAAGTAACC 59.691 47.826 0.00 0.00 40.11 2.85
5297 9770 3.242316 GCGCTACATGCTAACCAAGTAAC 60.242 47.826 0.00 0.00 40.11 2.50
5298 9771 2.933906 GCGCTACATGCTAACCAAGTAA 59.066 45.455 0.00 0.00 40.11 2.24
5299 9772 2.093921 TGCGCTACATGCTAACCAAGTA 60.094 45.455 9.73 0.00 40.11 2.24
5300 9773 1.338674 TGCGCTACATGCTAACCAAGT 60.339 47.619 9.73 0.00 40.11 3.16
5301 9774 1.368641 TGCGCTACATGCTAACCAAG 58.631 50.000 9.73 0.00 40.11 3.61
5302 9775 1.466950 GTTGCGCTACATGCTAACCAA 59.533 47.619 17.16 0.00 40.11 3.67
5419 9892 5.118510 GGACGGTAAATGCTGTTTTGATTTG 59.881 40.000 0.00 0.00 0.00 2.32
5442 9915 6.528321 TGCTTCTGTCATCTCTTAATATGGG 58.472 40.000 0.00 0.00 0.00 4.00
5676 10201 5.864418 AAATCCCGCTATTGAGTAGTGTA 57.136 39.130 0.00 0.00 38.90 2.90
5911 10438 3.244579 CCGCCTGTAAAGTTTATACGAGC 59.755 47.826 0.00 0.00 0.00 5.03
5943 10474 7.574021 TGCCAGGACTATTATTCCATTCTAT 57.426 36.000 3.21 0.00 35.33 1.98
5981 10512 9.607285 ACATGAAATTACACATTAAAAGACGTC 57.393 29.630 7.70 7.70 0.00 4.34
6049 10580 2.554032 ACATTTAGTGCAGTTCCACAGC 59.446 45.455 0.00 0.00 38.18 4.40
6275 10816 7.094508 TCATAGTTGCAAAACAAAGAGTTCA 57.905 32.000 0.00 0.00 40.82 3.18
6276 10817 7.649306 ACATCATAGTTGCAAAACAAAGAGTTC 59.351 33.333 0.00 0.00 40.82 3.01
6331 10872 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
6332 10873 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
6333 10874 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
6334 10875 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
6335 10876 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
6336 10877 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
6337 10878 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
6338 10879 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
6339 10880 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
6340 10881 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
6341 10882 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
6342 10883 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
6349 10890 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
6380 10921 9.632807 GCATCTAGACATATTTTAGTTCGAGAT 57.367 33.333 0.00 0.00 0.00 2.75
6381 10922 8.630037 TGCATCTAGACATATTTTAGTTCGAGA 58.370 33.333 0.00 0.00 0.00 4.04
6382 10923 8.803201 TGCATCTAGACATATTTTAGTTCGAG 57.197 34.615 0.00 0.00 0.00 4.04
6383 10924 9.411801 GATGCATCTAGACATATTTTAGTTCGA 57.588 33.333 19.70 0.00 0.00 3.71
6384 10925 8.651588 GGATGCATCTAGACATATTTTAGTTCG 58.348 37.037 25.28 0.00 0.00 3.95
6385 10926 8.940952 GGGATGCATCTAGACATATTTTAGTTC 58.059 37.037 25.28 2.81 0.00 3.01
6386 10927 7.885399 GGGGATGCATCTAGACATATTTTAGTT 59.115 37.037 25.28 0.00 0.00 2.24
6387 10928 7.238514 AGGGGATGCATCTAGACATATTTTAGT 59.761 37.037 25.28 0.00 0.00 2.24
6388 10929 7.628234 AGGGGATGCATCTAGACATATTTTAG 58.372 38.462 25.28 0.00 0.00 1.85
6389 10930 7.574021 AGGGGATGCATCTAGACATATTTTA 57.426 36.000 25.28 0.00 0.00 1.52
6390 10931 6.460103 AGGGGATGCATCTAGACATATTTT 57.540 37.500 25.28 0.00 0.00 1.82
6391 10932 6.460103 AAGGGGATGCATCTAGACATATTT 57.540 37.500 25.28 5.75 0.00 1.40
6392 10933 6.460103 AAAGGGGATGCATCTAGACATATT 57.540 37.500 25.28 8.12 0.00 1.28
6393 10934 6.460103 AAAAGGGGATGCATCTAGACATAT 57.540 37.500 25.28 3.97 0.00 1.78
6394 10935 5.912149 AAAAGGGGATGCATCTAGACATA 57.088 39.130 25.28 0.00 0.00 2.29
6395 10936 4.803329 AAAAGGGGATGCATCTAGACAT 57.197 40.909 25.28 9.21 0.00 3.06
6396 10937 5.221925 GGATAAAAGGGGATGCATCTAGACA 60.222 44.000 25.28 6.55 0.00 3.41
6397 10938 5.221925 TGGATAAAAGGGGATGCATCTAGAC 60.222 44.000 25.28 13.29 0.00 2.59
6398 10939 4.913355 TGGATAAAAGGGGATGCATCTAGA 59.087 41.667 25.28 0.00 0.00 2.43
6399 10940 5.246981 TGGATAAAAGGGGATGCATCTAG 57.753 43.478 25.28 0.00 0.00 2.43
6400 10941 5.865977 ATGGATAAAAGGGGATGCATCTA 57.134 39.130 25.28 9.84 29.02 1.98
6401 10942 4.754411 ATGGATAAAAGGGGATGCATCT 57.246 40.909 25.28 7.83 29.02 2.90
6402 10943 5.813513 AAATGGATAAAAGGGGATGCATC 57.186 39.130 18.81 18.81 33.50 3.91
6403 10944 5.666718 TCAAAATGGATAAAAGGGGATGCAT 59.333 36.000 0.00 0.00 35.84 3.96
6404 10945 5.028802 TCAAAATGGATAAAAGGGGATGCA 58.971 37.500 0.00 0.00 0.00 3.96
6405 10946 5.612725 TCAAAATGGATAAAAGGGGATGC 57.387 39.130 0.00 0.00 0.00 3.91
6406 10947 7.147689 TGTCATCAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
6407 10948 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
6408 10949 6.259893 TGTCATCAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
6409 10950 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
6410 10951 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
6417 10958 8.472413 CCAGAAATACTTGTCATCAAAATGGAT 58.528 33.333 0.00 0.00 33.42 3.41
6418 10959 7.577426 GCCAGAAATACTTGTCATCAAAATGGA 60.577 37.037 0.00 0.00 33.42 3.41
6419 10960 6.532657 GCCAGAAATACTTGTCATCAAAATGG 59.467 38.462 0.00 0.00 33.42 3.16
6420 10961 6.252015 CGCCAGAAATACTTGTCATCAAAATG 59.748 38.462 0.00 0.00 32.87 2.32
6421 10962 6.324819 CGCCAGAAATACTTGTCATCAAAAT 58.675 36.000 0.00 0.00 32.87 1.82
6422 10963 5.335583 CCGCCAGAAATACTTGTCATCAAAA 60.336 40.000 0.00 0.00 32.87 2.44
6423 10964 4.155826 CCGCCAGAAATACTTGTCATCAAA 59.844 41.667 0.00 0.00 32.87 2.69
6424 10965 3.689161 CCGCCAGAAATACTTGTCATCAA 59.311 43.478 0.00 0.00 0.00 2.57
6425 10966 3.055458 TCCGCCAGAAATACTTGTCATCA 60.055 43.478 0.00 0.00 0.00 3.07
6426 10967 3.531538 TCCGCCAGAAATACTTGTCATC 58.468 45.455 0.00 0.00 0.00 2.92
6427 10968 3.535561 CTCCGCCAGAAATACTTGTCAT 58.464 45.455 0.00 0.00 0.00 3.06
6428 10969 2.354704 CCTCCGCCAGAAATACTTGTCA 60.355 50.000 0.00 0.00 0.00 3.58
6429 10970 2.280628 CCTCCGCCAGAAATACTTGTC 58.719 52.381 0.00 0.00 0.00 3.18
6430 10971 1.065418 CCCTCCGCCAGAAATACTTGT 60.065 52.381 0.00 0.00 0.00 3.16
6431 10972 1.209504 TCCCTCCGCCAGAAATACTTG 59.790 52.381 0.00 0.00 0.00 3.16
6432 10973 1.486726 CTCCCTCCGCCAGAAATACTT 59.513 52.381 0.00 0.00 0.00 2.24
6433 10974 1.123928 CTCCCTCCGCCAGAAATACT 58.876 55.000 0.00 0.00 0.00 2.12
6434 10975 0.831307 ACTCCCTCCGCCAGAAATAC 59.169 55.000 0.00 0.00 0.00 1.89
6435 10976 2.317040 CTACTCCCTCCGCCAGAAATA 58.683 52.381 0.00 0.00 0.00 1.40
6436 10977 1.123928 CTACTCCCTCCGCCAGAAAT 58.876 55.000 0.00 0.00 0.00 2.17
6437 10978 0.252103 ACTACTCCCTCCGCCAGAAA 60.252 55.000 0.00 0.00 0.00 2.52
6438 10979 0.252103 AACTACTCCCTCCGCCAGAA 60.252 55.000 0.00 0.00 0.00 3.02
6439 10980 0.627451 TAACTACTCCCTCCGCCAGA 59.373 55.000 0.00 0.00 0.00 3.86
6440 10981 1.705873 ATAACTACTCCCTCCGCCAG 58.294 55.000 0.00 0.00 0.00 4.85
6441 10982 2.170012 AATAACTACTCCCTCCGCCA 57.830 50.000 0.00 0.00 0.00 5.69
6442 10983 3.551659 CGTAAATAACTACTCCCTCCGCC 60.552 52.174 0.00 0.00 0.00 6.13
6443 10984 3.551659 CCGTAAATAACTACTCCCTCCGC 60.552 52.174 0.00 0.00 0.00 5.54
6444 10985 3.551659 GCCGTAAATAACTACTCCCTCCG 60.552 52.174 0.00 0.00 0.00 4.63
6445 10986 3.385755 TGCCGTAAATAACTACTCCCTCC 59.614 47.826 0.00 0.00 0.00 4.30
6446 10987 4.618965 CTGCCGTAAATAACTACTCCCTC 58.381 47.826 0.00 0.00 0.00 4.30
6447 10988 3.181468 GCTGCCGTAAATAACTACTCCCT 60.181 47.826 0.00 0.00 0.00 4.20
6448 10989 3.129109 GCTGCCGTAAATAACTACTCCC 58.871 50.000 0.00 0.00 0.00 4.30
6449 10990 3.788937 TGCTGCCGTAAATAACTACTCC 58.211 45.455 0.00 0.00 0.00 3.85
6450 10991 4.679662 TCTGCTGCCGTAAATAACTACTC 58.320 43.478 0.00 0.00 0.00 2.59
6451 10992 4.159879 ACTCTGCTGCCGTAAATAACTACT 59.840 41.667 0.00 0.00 0.00 2.57
6452 10993 4.430908 ACTCTGCTGCCGTAAATAACTAC 58.569 43.478 0.00 0.00 0.00 2.73
6453 10994 4.730949 ACTCTGCTGCCGTAAATAACTA 57.269 40.909 0.00 0.00 0.00 2.24
6454 10995 3.611766 ACTCTGCTGCCGTAAATAACT 57.388 42.857 0.00 0.00 0.00 2.24
6455 10996 4.153475 TCAAACTCTGCTGCCGTAAATAAC 59.847 41.667 0.00 0.00 0.00 1.89
6472 11013 9.601217 AAAGTTATAAGAGCACGATATCAAACT 57.399 29.630 3.12 0.00 0.00 2.66
6473 11014 9.851043 GAAAGTTATAAGAGCACGATATCAAAC 57.149 33.333 3.12 0.00 0.00 2.93
6500 11041 3.944087 AGTCCATCTTTAGCAACCTGAC 58.056 45.455 0.00 0.00 0.00 3.51
6606 11147 7.605449 ACTTGAATATGCAACTGTAGCAAAAT 58.395 30.769 0.00 0.00 46.27 1.82
6609 11150 5.939883 AGACTTGAATATGCAACTGTAGCAA 59.060 36.000 0.00 0.00 46.27 3.91
6689 11230 4.566759 ATGTCACATTACAGATTCGGAACG 59.433 41.667 0.00 0.00 43.42 3.95
6695 11236 9.069078 CAATTGACAATGTCACATTACAGATTC 57.931 33.333 16.50 0.00 42.60 2.52
6805 11346 2.947652 AGTTGAGCTGCGCATATTCAAT 59.052 40.909 24.55 15.37 31.28 2.57
6813 11354 1.877637 TCTTTTAGTTGAGCTGCGCA 58.122 45.000 10.98 10.98 0.00 6.09
6830 11371 5.012561 CCTTGAGCCCATATAAGCTACTTCT 59.987 44.000 0.00 0.00 40.11 2.85
6926 11550 7.766738 TGTATGGATATTACGTGAAGCAGAAAA 59.233 33.333 0.00 0.00 0.00 2.29
7571 12205 5.670149 TTGCCGAAATTTAGTCGTGTTTA 57.330 34.783 0.00 0.00 36.77 2.01
7693 12390 1.872679 GAAGGCCGACGATGACGAC 60.873 63.158 0.00 0.00 42.66 4.34
7694 12391 1.989966 GAGAAGGCCGACGATGACGA 61.990 60.000 0.00 0.00 42.66 4.20
7695 12392 1.586564 GAGAAGGCCGACGATGACG 60.587 63.158 0.00 0.00 45.75 4.35
7696 12393 1.227002 GGAGAAGGCCGACGATGAC 60.227 63.158 0.00 0.00 0.00 3.06
7699 12396 2.128507 GGAGGAGAAGGCCGACGAT 61.129 63.158 0.00 0.00 0.00 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.