Multiple sequence alignment - TraesCS1D01G146300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G146300 chr1D 100.000 2237 0 0 1 2237 202545347 202547583 0.000000e+00 4132
1 TraesCS1D01G146300 chr1D 82.030 601 67 26 675 1238 202493920 202494516 7.230000e-130 473
2 TraesCS1D01G146300 chr1D 77.681 914 106 59 688 1541 458266267 458267142 3.360000e-128 468
3 TraesCS1D01G146300 chr1D 82.101 514 64 21 841 1340 202477389 202477888 4.440000e-112 414
4 TraesCS1D01G146300 chr1D 77.657 734 111 41 832 1541 458164434 458165138 4.480000e-107 398
5 TraesCS1D01G146300 chr1D 84.115 384 58 2 1848 2231 117984534 117984914 3.510000e-98 368
6 TraesCS1D01G146300 chr1D 79.268 574 71 30 987 1533 458257283 458257835 7.600000e-95 357
7 TraesCS1D01G146300 chr1D 78.374 578 72 35 987 1533 458161002 458161557 2.140000e-85 326
8 TraesCS1D01G146300 chr1D 88.554 166 19 0 1 166 124917397 124917562 3.770000e-48 202
9 TraesCS1D01G146300 chr1D 82.000 200 28 6 400 598 458279757 458279949 1.780000e-36 163
10 TraesCS1D01G146300 chr1D 86.111 144 15 2 688 827 458238345 458238487 1.380000e-32 150
11 TraesCS1D01G146300 chr1D 92.771 83 6 0 1385 1467 458200894 458200976 1.090000e-23 121
12 TraesCS1D01G146300 chr1B 90.536 560 53 0 1027 1586 296235492 296236051 0.000000e+00 741
13 TraesCS1D01G146300 chr1B 86.895 641 78 5 1600 2237 576519768 576520405 0.000000e+00 713
14 TraesCS1D01G146300 chr1B 78.056 638 69 33 675 1277 629053740 629054341 9.900000e-89 337
15 TraesCS1D01G146300 chr1B 84.385 301 36 7 986 1277 628988121 628988419 3.640000e-73 285
16 TraesCS1D01G146300 chr1B 77.555 499 68 30 986 1452 628994701 628995187 6.130000e-66 261
17 TraesCS1D01G146300 chr1B 88.535 157 14 4 10 166 592372116 592371964 1.050000e-43 187
18 TraesCS1D01G146300 chr1B 84.000 200 24 6 400 598 628903440 628903632 3.790000e-43 185
19 TraesCS1D01G146300 chr1B 83.500 200 25 7 400 598 628860556 628860748 1.770000e-41 180
20 TraesCS1D01G146300 chr1B 83.500 200 25 6 400 598 628979551 628979743 1.770000e-41 180
21 TraesCS1D01G146300 chr1B 83.168 202 24 7 400 598 628810781 628810975 2.280000e-40 176
22 TraesCS1D01G146300 chr1B 82.500 200 27 5 400 598 628815199 628815391 3.820000e-38 169
23 TraesCS1D01G146300 chr1B 82.587 201 25 7 400 598 629053266 629053458 3.820000e-38 169
24 TraesCS1D01G146300 chr1B 82.000 200 28 5 400 598 628993921 628994113 1.780000e-36 163
25 TraesCS1D01G146300 chr1B 81.188 202 28 7 400 598 628928421 628928615 1.070000e-33 154
26 TraesCS1D01G146300 chr1B 77.551 196 29 10 1260 1452 628918669 628918852 1.090000e-18 104
27 TraesCS1D01G146300 chr3D 87.281 629 74 5 1612 2237 599314918 599314293 0.000000e+00 713
28 TraesCS1D01G146300 chr3D 90.141 142 14 0 2073 2214 1909570 1909711 3.790000e-43 185
29 TraesCS1D01G146300 chr5B 86.895 641 75 8 1601 2237 678422156 678422791 0.000000e+00 710
30 TraesCS1D01G146300 chr5D 86.520 638 81 3 1604 2237 345961404 345962040 0.000000e+00 697
31 TraesCS1D01G146300 chr6B 87.395 595 67 6 1605 2194 712188434 712187843 0.000000e+00 676
32 TraesCS1D01G146300 chr6B 87.109 512 56 9 1609 2115 693511449 693510943 2.490000e-159 571
33 TraesCS1D01G146300 chr6B 87.715 407 48 2 1612 2017 595948808 595948403 7.230000e-130 473
34 TraesCS1D01G146300 chr6B 87.209 172 17 5 1 168 321304475 321304305 8.150000e-45 191
35 TraesCS1D01G146300 chr2D 88.601 386 43 1 1612 1996 423164793 423164408 3.360000e-128 468
36 TraesCS1D01G146300 chr2D 85.455 440 61 2 1604 2040 505643949 505643510 2.620000e-124 455
37 TraesCS1D01G146300 chr1A 75.667 900 118 52 715 1541 550788100 550788971 2.730000e-94 355
38 TraesCS1D01G146300 chr1A 77.953 508 72 26 971 1466 550700609 550701088 4.700000e-72 281
39 TraesCS1D01G146300 chr1A 79.372 223 22 15 1386 1585 550705168 550705389 3.880000e-28 135
40 TraesCS1D01G146300 chr6A 88.360 189 21 1 2049 2237 554826688 554826501 2.240000e-55 226
41 TraesCS1D01G146300 chr6A 88.372 172 15 5 1 168 252846914 252846744 3.770000e-48 202
42 TraesCS1D01G146300 chr6D 86.047 172 19 5 1 168 199663216 199663046 1.770000e-41 180
43 TraesCS1D01G146300 chr3B 85.030 167 19 2 1 167 120626882 120627042 4.940000e-37 165
44 TraesCS1D01G146300 chr3B 85.030 167 19 2 1 167 120653448 120653608 4.940000e-37 165
45 TraesCS1D01G146300 chr4A 84.713 157 18 2 15 165 574846612 574846768 3.850000e-33 152
46 TraesCS1D01G146300 chr4A 85.235 149 21 1 19 167 737868085 737867938 3.850000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G146300 chr1D 202545347 202547583 2236 False 4132 4132 100.0000 1 2237 1 chr1D.!!$F5 2236
1 TraesCS1D01G146300 chr1D 202493920 202494516 596 False 473 473 82.0300 675 1238 1 chr1D.!!$F4 563
2 TraesCS1D01G146300 chr1D 458266267 458267142 875 False 468 468 77.6810 688 1541 1 chr1D.!!$F9 853
3 TraesCS1D01G146300 chr1D 458161002 458165138 4136 False 362 398 78.0155 832 1541 2 chr1D.!!$F11 709
4 TraesCS1D01G146300 chr1D 458257283 458257835 552 False 357 357 79.2680 987 1533 1 chr1D.!!$F8 546
5 TraesCS1D01G146300 chr1B 296235492 296236051 559 False 741 741 90.5360 1027 1586 1 chr1B.!!$F1 559
6 TraesCS1D01G146300 chr1B 576519768 576520405 637 False 713 713 86.8950 1600 2237 1 chr1B.!!$F2 637
7 TraesCS1D01G146300 chr1B 629053266 629054341 1075 False 253 337 80.3215 400 1277 2 chr1B.!!$F12 877
8 TraesCS1D01G146300 chr1B 628993921 628995187 1266 False 212 261 79.7775 400 1452 2 chr1B.!!$F11 1052
9 TraesCS1D01G146300 chr3D 599314293 599314918 625 True 713 713 87.2810 1612 2237 1 chr3D.!!$R1 625
10 TraesCS1D01G146300 chr5B 678422156 678422791 635 False 710 710 86.8950 1601 2237 1 chr5B.!!$F1 636
11 TraesCS1D01G146300 chr5D 345961404 345962040 636 False 697 697 86.5200 1604 2237 1 chr5D.!!$F1 633
12 TraesCS1D01G146300 chr6B 712187843 712188434 591 True 676 676 87.3950 1605 2194 1 chr6B.!!$R4 589
13 TraesCS1D01G146300 chr6B 693510943 693511449 506 True 571 571 87.1090 1609 2115 1 chr6B.!!$R3 506
14 TraesCS1D01G146300 chr1A 550788100 550788971 871 False 355 355 75.6670 715 1541 1 chr1A.!!$F3 826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 288 0.036765 TGGAAGGGGTTTGTCGATCG 60.037 55.0 9.36 9.36 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2097 4827 0.670162 CCACCTCCAACTGCAAACTG 59.33 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.852075 TTGAAGTCCCCGGGTGCT 60.852 61.111 21.85 14.22 0.00 4.40
18 19 2.890766 TTGAAGTCCCCGGGTGCTC 61.891 63.158 21.85 10.83 0.00 4.26
23 24 4.682334 TCCCCGGGTGCTCGTGTA 62.682 66.667 21.85 0.00 0.00 2.90
24 25 4.143333 CCCCGGGTGCTCGTGTAG 62.143 72.222 21.85 0.00 0.00 2.74
26 27 2.126071 CCGGGTGCTCGTGTAGTG 60.126 66.667 0.00 0.00 0.00 2.74
27 28 2.126071 CGGGTGCTCGTGTAGTGG 60.126 66.667 0.00 0.00 0.00 4.00
28 29 2.927580 CGGGTGCTCGTGTAGTGGT 61.928 63.158 0.00 0.00 0.00 4.16
29 30 1.588824 CGGGTGCTCGTGTAGTGGTA 61.589 60.000 0.00 0.00 0.00 3.25
31 32 0.172803 GGTGCTCGTGTAGTGGTAGG 59.827 60.000 0.00 0.00 0.00 3.18
33 34 0.038599 TGCTCGTGTAGTGGTAGGGA 59.961 55.000 0.00 0.00 0.00 4.20
34 35 1.341679 TGCTCGTGTAGTGGTAGGGAT 60.342 52.381 0.00 0.00 0.00 3.85
35 36 1.067212 GCTCGTGTAGTGGTAGGGATG 59.933 57.143 0.00 0.00 0.00 3.51
36 37 1.681793 CTCGTGTAGTGGTAGGGATGG 59.318 57.143 0.00 0.00 0.00 3.51
37 38 1.006281 TCGTGTAGTGGTAGGGATGGT 59.994 52.381 0.00 0.00 0.00 3.55
38 39 1.136305 CGTGTAGTGGTAGGGATGGTG 59.864 57.143 0.00 0.00 0.00 4.17
40 41 2.570302 GTGTAGTGGTAGGGATGGTGTT 59.430 50.000 0.00 0.00 0.00 3.32
41 42 2.569853 TGTAGTGGTAGGGATGGTGTTG 59.430 50.000 0.00 0.00 0.00 3.33
42 43 1.742308 AGTGGTAGGGATGGTGTTGT 58.258 50.000 0.00 0.00 0.00 3.32
43 44 2.062636 AGTGGTAGGGATGGTGTTGTT 58.937 47.619 0.00 0.00 0.00 2.83
44 45 2.159382 GTGGTAGGGATGGTGTTGTTG 58.841 52.381 0.00 0.00 0.00 3.33
45 46 1.173913 GGTAGGGATGGTGTTGTTGC 58.826 55.000 0.00 0.00 0.00 4.17
47 48 0.958382 TAGGGATGGTGTTGTTGCGC 60.958 55.000 0.00 0.00 0.00 6.09
48 49 2.268076 GGGATGGTGTTGTTGCGCT 61.268 57.895 9.73 0.00 0.00 5.92
49 50 1.210155 GGATGGTGTTGTTGCGCTC 59.790 57.895 9.73 2.14 0.00 5.03
67 68 1.929836 CTCAGCGTCTTTGTATCCTGC 59.070 52.381 0.00 0.00 0.00 4.85
68 69 1.009829 CAGCGTCTTTGTATCCTGCC 58.990 55.000 0.00 0.00 0.00 4.85
69 70 0.905357 AGCGTCTTTGTATCCTGCCT 59.095 50.000 0.00 0.00 0.00 4.75
70 71 1.279271 AGCGTCTTTGTATCCTGCCTT 59.721 47.619 0.00 0.00 0.00 4.35
71 72 1.398390 GCGTCTTTGTATCCTGCCTTG 59.602 52.381 0.00 0.00 0.00 3.61
72 73 2.009774 CGTCTTTGTATCCTGCCTTGG 58.990 52.381 0.00 0.00 0.00 3.61
73 74 2.354704 CGTCTTTGTATCCTGCCTTGGA 60.355 50.000 0.00 0.00 40.82 3.53
75 76 4.442893 CGTCTTTGTATCCTGCCTTGGATA 60.443 45.833 6.22 6.22 44.36 2.59
76 77 5.625150 GTCTTTGTATCCTGCCTTGGATAT 58.375 41.667 11.63 0.00 46.84 1.63
78 79 5.132648 TCTTTGTATCCTGCCTTGGATATGT 59.867 40.000 11.63 0.00 46.84 2.29
80 81 3.716353 TGTATCCTGCCTTGGATATGTGT 59.284 43.478 11.63 0.00 46.84 3.72
82 83 1.915489 TCCTGCCTTGGATATGTGTGT 59.085 47.619 0.00 0.00 0.00 3.72
83 84 2.019249 CCTGCCTTGGATATGTGTGTG 58.981 52.381 0.00 0.00 0.00 3.82
84 85 1.402968 CTGCCTTGGATATGTGTGTGC 59.597 52.381 0.00 0.00 0.00 4.57
86 87 1.737838 CCTTGGATATGTGTGTGCGT 58.262 50.000 0.00 0.00 0.00 5.24
87 88 2.083774 CCTTGGATATGTGTGTGCGTT 58.916 47.619 0.00 0.00 0.00 4.84
88 89 2.159531 CCTTGGATATGTGTGTGCGTTG 60.160 50.000 0.00 0.00 0.00 4.10
89 90 2.177394 TGGATATGTGTGTGCGTTGT 57.823 45.000 0.00 0.00 0.00 3.32
90 91 1.803555 TGGATATGTGTGTGCGTTGTG 59.196 47.619 0.00 0.00 0.00 3.33
91 92 1.130373 GGATATGTGTGTGCGTTGTGG 59.870 52.381 0.00 0.00 0.00 4.17
92 93 1.804151 GATATGTGTGTGCGTTGTGGT 59.196 47.619 0.00 0.00 0.00 4.16
94 95 1.723608 ATGTGTGTGCGTTGTGGTGG 61.724 55.000 0.00 0.00 0.00 4.61
95 96 3.513438 TGTGTGCGTTGTGGTGGC 61.513 61.111 0.00 0.00 0.00 5.01
96 97 3.513438 GTGTGCGTTGTGGTGGCA 61.513 61.111 0.00 0.00 0.00 4.92
97 98 2.518112 TGTGCGTTGTGGTGGCAT 60.518 55.556 0.00 0.00 39.14 4.40
98 99 2.050168 GTGCGTTGTGGTGGCATG 60.050 61.111 0.00 0.00 39.14 4.06
101 102 3.659092 CGTTGTGGTGGCATGCGT 61.659 61.111 12.44 0.00 0.00 5.24
102 103 2.727544 GTTGTGGTGGCATGCGTT 59.272 55.556 12.44 0.00 0.00 4.84
103 104 1.067250 GTTGTGGTGGCATGCGTTT 59.933 52.632 12.44 0.00 0.00 3.60
104 105 1.067084 TTGTGGTGGCATGCGTTTG 59.933 52.632 12.44 0.00 0.00 2.93
105 106 1.670949 TTGTGGTGGCATGCGTTTGT 61.671 50.000 12.44 0.00 0.00 2.83
106 107 0.819666 TGTGGTGGCATGCGTTTGTA 60.820 50.000 12.44 0.00 0.00 2.41
107 108 0.386731 GTGGTGGCATGCGTTTGTAC 60.387 55.000 12.44 2.26 0.00 2.90
108 109 1.211709 GGTGGCATGCGTTTGTACC 59.788 57.895 12.44 9.06 0.00 3.34
110 111 2.328856 TGGCATGCGTTTGTACCGG 61.329 57.895 12.44 0.00 0.00 5.28
112 113 2.329614 GCATGCGTTTGTACCGGGT 61.330 57.895 6.32 4.46 0.00 5.28
113 114 1.858372 GCATGCGTTTGTACCGGGTT 61.858 55.000 4.31 0.00 0.00 4.11
114 115 0.109964 CATGCGTTTGTACCGGGTTG 60.110 55.000 4.31 0.00 0.00 3.77
115 116 0.535553 ATGCGTTTGTACCGGGTTGT 60.536 50.000 4.31 0.00 0.00 3.32
116 117 0.747283 TGCGTTTGTACCGGGTTGTT 60.747 50.000 4.31 0.00 0.00 2.83
117 118 0.317186 GCGTTTGTACCGGGTTGTTG 60.317 55.000 4.31 0.00 0.00 3.33
118 119 1.015868 CGTTTGTACCGGGTTGTTGT 58.984 50.000 4.31 0.00 0.00 3.32
119 120 1.401199 CGTTTGTACCGGGTTGTTGTT 59.599 47.619 4.31 0.00 0.00 2.83
120 121 2.791849 CGTTTGTACCGGGTTGTTGTTG 60.792 50.000 4.31 0.00 0.00 3.33
121 122 2.414994 TTGTACCGGGTTGTTGTTGA 57.585 45.000 4.31 0.00 0.00 3.18
122 123 2.642154 TGTACCGGGTTGTTGTTGAT 57.358 45.000 4.31 0.00 0.00 2.57
125 126 0.179040 ACCGGGTTGTTGTTGATCGT 60.179 50.000 6.32 0.00 0.00 3.73
126 127 0.948678 CCGGGTTGTTGTTGATCGTT 59.051 50.000 0.00 0.00 0.00 3.85
127 128 1.334599 CCGGGTTGTTGTTGATCGTTG 60.335 52.381 0.00 0.00 0.00 4.10
128 129 1.332375 CGGGTTGTTGTTGATCGTTGT 59.668 47.619 0.00 0.00 0.00 3.32
130 131 3.732471 CGGGTTGTTGTTGATCGTTGTTT 60.732 43.478 0.00 0.00 0.00 2.83
131 132 4.177783 GGGTTGTTGTTGATCGTTGTTTT 58.822 39.130 0.00 0.00 0.00 2.43
132 133 5.341617 GGGTTGTTGTTGATCGTTGTTTTA 58.658 37.500 0.00 0.00 0.00 1.52
133 134 5.980715 GGGTTGTTGTTGATCGTTGTTTTAT 59.019 36.000 0.00 0.00 0.00 1.40
134 135 7.140048 GGGTTGTTGTTGATCGTTGTTTTATA 58.860 34.615 0.00 0.00 0.00 0.98
135 136 7.810759 GGGTTGTTGTTGATCGTTGTTTTATAT 59.189 33.333 0.00 0.00 0.00 0.86
136 137 9.828852 GGTTGTTGTTGATCGTTGTTTTATATA 57.171 29.630 0.00 0.00 0.00 0.86
146 147 7.424227 TCGTTGTTTTATATATAAAGCGGGG 57.576 36.000 20.48 14.15 36.59 5.73
147 148 6.073112 TCGTTGTTTTATATATAAAGCGGGGC 60.073 38.462 20.48 12.49 36.59 5.80
149 150 7.427214 GTTGTTTTATATATAAAGCGGGGCAA 58.573 34.615 20.48 14.67 36.59 4.52
150 151 7.584122 TGTTTTATATATAAAGCGGGGCAAA 57.416 32.000 20.48 5.28 36.59 3.68
151 152 8.008513 TGTTTTATATATAAAGCGGGGCAAAA 57.991 30.769 20.48 3.98 36.59 2.44
153 154 8.757789 GTTTTATATATAAAGCGGGGCAAAAAC 58.242 33.333 15.65 7.02 34.13 2.43
154 155 7.826918 TTATATATAAAGCGGGGCAAAAACT 57.173 32.000 2.56 0.00 0.00 2.66
155 156 6.724893 ATATATAAAGCGGGGCAAAAACTT 57.275 33.333 0.00 0.00 0.00 2.66
156 157 3.762407 ATAAAGCGGGGCAAAAACTTT 57.238 38.095 0.00 0.00 35.00 2.66
157 158 2.411628 AAAGCGGGGCAAAAACTTTT 57.588 40.000 0.00 0.00 0.00 2.27
158 159 2.411628 AAGCGGGGCAAAAACTTTTT 57.588 40.000 0.00 0.00 0.00 1.94
180 181 3.414269 TCGGTAAATCTTTGTTCCACCC 58.586 45.455 0.00 0.00 0.00 4.61
181 182 2.490509 CGGTAAATCTTTGTTCCACCCC 59.509 50.000 0.00 0.00 0.00 4.95
182 183 3.502356 GGTAAATCTTTGTTCCACCCCA 58.498 45.455 0.00 0.00 0.00 4.96
183 184 3.898741 GGTAAATCTTTGTTCCACCCCAA 59.101 43.478 0.00 0.00 0.00 4.12
184 185 4.345547 GGTAAATCTTTGTTCCACCCCAAA 59.654 41.667 0.00 0.00 0.00 3.28
185 186 5.163290 GGTAAATCTTTGTTCCACCCCAAAA 60.163 40.000 0.00 0.00 30.75 2.44
186 187 4.687901 AATCTTTGTTCCACCCCAAAAG 57.312 40.909 0.00 0.00 30.75 2.27
187 188 1.760029 TCTTTGTTCCACCCCAAAAGC 59.240 47.619 0.00 0.00 30.75 3.51
188 189 1.762370 CTTTGTTCCACCCCAAAAGCT 59.238 47.619 0.00 0.00 30.75 3.74
189 190 1.872773 TTGTTCCACCCCAAAAGCTT 58.127 45.000 0.00 0.00 0.00 3.74
191 192 1.484240 TGTTCCACCCCAAAAGCTTTG 59.516 47.619 13.54 7.04 0.00 2.77
192 193 1.760029 GTTCCACCCCAAAAGCTTTGA 59.240 47.619 13.54 0.39 0.00 2.69
193 194 2.166907 TCCACCCCAAAAGCTTTGAA 57.833 45.000 13.54 0.00 0.00 2.69
194 195 1.760029 TCCACCCCAAAAGCTTTGAAC 59.240 47.619 13.54 0.00 0.00 3.18
195 196 1.762370 CCACCCCAAAAGCTTTGAACT 59.238 47.619 13.54 0.00 0.00 3.01
198 199 2.430694 ACCCCAAAAGCTTTGAACTGTC 59.569 45.455 13.54 0.00 0.00 3.51
199 200 2.430332 CCCCAAAAGCTTTGAACTGTCA 59.570 45.455 13.54 0.00 0.00 3.58
200 201 3.118811 CCCCAAAAGCTTTGAACTGTCAA 60.119 43.478 13.54 0.00 42.12 3.18
201 202 3.865164 CCCAAAAGCTTTGAACTGTCAAC 59.135 43.478 13.54 0.00 43.52 3.18
202 203 4.381932 CCCAAAAGCTTTGAACTGTCAACT 60.382 41.667 13.54 0.00 43.52 3.16
203 204 5.170748 CCAAAAGCTTTGAACTGTCAACTT 58.829 37.500 13.54 0.00 43.52 2.66
204 205 6.329496 CCAAAAGCTTTGAACTGTCAACTTA 58.671 36.000 13.54 0.00 43.52 2.24
205 206 6.980397 CCAAAAGCTTTGAACTGTCAACTTAT 59.020 34.615 13.54 0.00 43.52 1.73
206 207 7.168135 CCAAAAGCTTTGAACTGTCAACTTATC 59.832 37.037 13.54 0.00 43.52 1.75
207 208 7.573968 AAAGCTTTGAACTGTCAACTTATCT 57.426 32.000 11.80 0.00 43.52 1.98
208 209 7.573968 AAGCTTTGAACTGTCAACTTATCTT 57.426 32.000 0.00 0.00 43.52 2.40
209 210 7.195839 AGCTTTGAACTGTCAACTTATCTTC 57.804 36.000 0.00 0.00 43.52 2.87
210 211 6.767902 AGCTTTGAACTGTCAACTTATCTTCA 59.232 34.615 0.00 0.00 43.52 3.02
211 212 7.446625 AGCTTTGAACTGTCAACTTATCTTCAT 59.553 33.333 0.00 0.00 43.52 2.57
217 218 9.606631 GAACTGTCAACTTATCTTCATTATCCT 57.393 33.333 0.00 0.00 0.00 3.24
218 219 9.965902 AACTGTCAACTTATCTTCATTATCCTT 57.034 29.630 0.00 0.00 0.00 3.36
219 220 9.388506 ACTGTCAACTTATCTTCATTATCCTTG 57.611 33.333 0.00 0.00 0.00 3.61
220 221 9.388506 CTGTCAACTTATCTTCATTATCCTTGT 57.611 33.333 0.00 0.00 0.00 3.16
221 222 9.166173 TGTCAACTTATCTTCATTATCCTTGTG 57.834 33.333 0.00 0.00 0.00 3.33
226 227 9.911788 ACTTATCTTCATTATCCTTGTGATGTT 57.088 29.630 0.00 0.00 34.76 2.71
228 229 9.685276 TTATCTTCATTATCCTTGTGATGTTGT 57.315 29.630 0.00 0.00 34.76 3.32
230 231 9.685276 ATCTTCATTATCCTTGTGATGTTGTTA 57.315 29.630 0.00 0.00 34.76 2.41
231 232 8.946085 TCTTCATTATCCTTGTGATGTTGTTAC 58.054 33.333 0.00 0.00 34.76 2.50
232 233 8.628630 TTCATTATCCTTGTGATGTTGTTACA 57.371 30.769 0.00 0.00 38.95 2.41
234 235 9.898152 TCATTATCCTTGTGATGTTGTTACATA 57.102 29.630 0.00 0.00 44.90 2.29
263 264 8.723942 ACATGTTGTTGATCTAAGGATAAGAC 57.276 34.615 0.00 0.00 31.46 3.01
265 266 7.252612 TGTTGTTGATCTAAGGATAAGACCA 57.747 36.000 0.00 0.00 31.46 4.02
266 267 7.103641 TGTTGTTGATCTAAGGATAAGACCAC 58.896 38.462 0.00 0.00 31.46 4.16
267 268 5.902681 TGTTGATCTAAGGATAAGACCACG 58.097 41.667 0.00 0.00 31.46 4.94
268 269 5.421056 TGTTGATCTAAGGATAAGACCACGT 59.579 40.000 0.00 0.00 31.46 4.49
269 270 5.515797 TGATCTAAGGATAAGACCACGTG 57.484 43.478 9.08 9.08 31.46 4.49
270 271 4.341235 TGATCTAAGGATAAGACCACGTGG 59.659 45.833 32.83 32.83 35.10 4.94
271 272 3.972133 TCTAAGGATAAGACCACGTGGA 58.028 45.455 40.21 19.23 38.94 4.02
272 273 4.346730 TCTAAGGATAAGACCACGTGGAA 58.653 43.478 40.21 21.66 38.94 3.53
273 274 3.611766 AAGGATAAGACCACGTGGAAG 57.388 47.619 40.21 15.32 38.94 3.46
274 275 1.831736 AGGATAAGACCACGTGGAAGG 59.168 52.381 40.21 15.35 38.94 3.46
277 278 0.472352 TAAGACCACGTGGAAGGGGT 60.472 55.000 40.21 17.76 38.94 4.95
279 280 1.149854 GACCACGTGGAAGGGGTTT 59.850 57.895 40.21 16.10 38.94 3.27
280 281 1.152839 ACCACGTGGAAGGGGTTTG 60.153 57.895 40.21 10.59 38.94 2.93
283 284 1.227734 ACGTGGAAGGGGTTTGTCG 60.228 57.895 0.00 0.00 0.00 4.35
285 286 0.321298 CGTGGAAGGGGTTTGTCGAT 60.321 55.000 0.00 0.00 0.00 3.59
286 287 1.450025 GTGGAAGGGGTTTGTCGATC 58.550 55.000 0.00 0.00 0.00 3.69
287 288 0.036765 TGGAAGGGGTTTGTCGATCG 60.037 55.000 9.36 9.36 0.00 3.69
290 291 0.899720 AAGGGGTTTGTCGATCGCTA 59.100 50.000 11.09 0.00 0.00 4.26
291 292 0.460311 AGGGGTTTGTCGATCGCTAG 59.540 55.000 11.09 0.00 0.00 3.42
292 293 0.529992 GGGGTTTGTCGATCGCTAGG 60.530 60.000 11.09 0.00 0.00 3.02
293 294 0.529992 GGGTTTGTCGATCGCTAGGG 60.530 60.000 11.09 0.00 0.00 3.53
296 297 0.179111 TTTGTCGATCGCTAGGGCTG 60.179 55.000 11.09 0.00 36.09 4.85
297 298 1.320344 TTGTCGATCGCTAGGGCTGT 61.320 55.000 11.09 0.00 36.09 4.40
299 300 0.666913 GTCGATCGCTAGGGCTGTAA 59.333 55.000 11.09 0.00 36.09 2.41
300 301 1.066605 GTCGATCGCTAGGGCTGTAAA 59.933 52.381 11.09 0.00 36.09 2.01
301 302 1.752498 TCGATCGCTAGGGCTGTAAAA 59.248 47.619 11.09 0.00 36.09 1.52
302 303 2.166870 TCGATCGCTAGGGCTGTAAAAA 59.833 45.455 11.09 0.00 36.09 1.94
324 325 4.820284 AGTTGAAAGTGCTTACTTCTGC 57.180 40.909 0.00 0.00 0.00 4.26
325 326 4.455606 AGTTGAAAGTGCTTACTTCTGCT 58.544 39.130 0.00 0.00 0.00 4.24
327 328 6.055588 AGTTGAAAGTGCTTACTTCTGCTAA 58.944 36.000 0.00 0.00 0.00 3.09
329 330 5.611374 TGAAAGTGCTTACTTCTGCTAACT 58.389 37.500 0.00 0.00 0.00 2.24
330 331 5.696724 TGAAAGTGCTTACTTCTGCTAACTC 59.303 40.000 0.00 0.00 0.00 3.01
331 332 5.476091 AAGTGCTTACTTCTGCTAACTCT 57.524 39.130 0.00 0.00 0.00 3.24
333 334 4.282195 AGTGCTTACTTCTGCTAACTCTGT 59.718 41.667 0.00 0.00 0.00 3.41
334 335 4.387256 GTGCTTACTTCTGCTAACTCTGTG 59.613 45.833 0.00 0.00 0.00 3.66
335 336 4.280929 TGCTTACTTCTGCTAACTCTGTGA 59.719 41.667 0.00 0.00 0.00 3.58
336 337 5.047021 TGCTTACTTCTGCTAACTCTGTGAT 60.047 40.000 0.00 0.00 0.00 3.06
338 339 4.881019 ACTTCTGCTAACTCTGTGATGT 57.119 40.909 0.00 0.00 0.00 3.06
340 341 3.599730 TCTGCTAACTCTGTGATGTGG 57.400 47.619 0.00 0.00 0.00 4.17
341 342 2.005451 CTGCTAACTCTGTGATGTGGC 58.995 52.381 0.00 0.00 0.00 5.01
344 345 2.417933 GCTAACTCTGTGATGTGGCTTG 59.582 50.000 0.00 0.00 0.00 4.01
345 346 2.645838 AACTCTGTGATGTGGCTTGT 57.354 45.000 0.00 0.00 0.00 3.16
346 347 1.888215 ACTCTGTGATGTGGCTTGTG 58.112 50.000 0.00 0.00 0.00 3.33
347 348 1.141657 ACTCTGTGATGTGGCTTGTGT 59.858 47.619 0.00 0.00 0.00 3.72
348 349 1.802960 CTCTGTGATGTGGCTTGTGTC 59.197 52.381 0.00 0.00 0.00 3.67
349 350 1.140652 TCTGTGATGTGGCTTGTGTCA 59.859 47.619 0.00 0.00 0.00 3.58
350 351 2.156917 CTGTGATGTGGCTTGTGTCAT 58.843 47.619 0.00 0.00 0.00 3.06
353 354 2.553602 GTGATGTGGCTTGTGTCATTCA 59.446 45.455 0.00 0.00 0.00 2.57
354 355 3.004629 GTGATGTGGCTTGTGTCATTCAA 59.995 43.478 0.00 0.00 29.19 2.69
355 356 3.827876 TGATGTGGCTTGTGTCATTCAAT 59.172 39.130 0.00 0.00 0.00 2.57
356 357 3.921119 TGTGGCTTGTGTCATTCAATC 57.079 42.857 0.00 0.00 0.00 2.67
357 358 2.226200 TGTGGCTTGTGTCATTCAATCG 59.774 45.455 0.00 0.00 0.00 3.34
358 359 2.226437 GTGGCTTGTGTCATTCAATCGT 59.774 45.455 0.00 0.00 0.00 3.73
359 360 2.226200 TGGCTTGTGTCATTCAATCGTG 59.774 45.455 0.00 0.00 0.00 4.35
360 361 2.483877 GGCTTGTGTCATTCAATCGTGA 59.516 45.455 0.00 0.00 0.00 4.35
362 363 3.908382 GCTTGTGTCATTCAATCGTGAAC 59.092 43.478 0.00 0.00 46.40 3.18
363 364 4.319766 GCTTGTGTCATTCAATCGTGAACT 60.320 41.667 0.00 0.00 46.40 3.01
364 365 5.749596 TTGTGTCATTCAATCGTGAACTT 57.250 34.783 0.00 0.00 46.40 2.66
365 366 5.094429 TGTGTCATTCAATCGTGAACTTG 57.906 39.130 0.00 0.00 46.40 3.16
367 368 3.155998 GTCATTCAATCGTGAACTTGCG 58.844 45.455 0.00 0.00 46.40 4.85
370 371 0.882484 TCAATCGTGAACTTGCGGCA 60.882 50.000 0.00 0.00 0.00 5.69
371 372 0.453282 CAATCGTGAACTTGCGGCAG 60.453 55.000 1.67 0.12 0.00 4.85
372 373 0.602638 AATCGTGAACTTGCGGCAGA 60.603 50.000 1.67 0.00 0.00 4.26
374 375 0.245266 TCGTGAACTTGCGGCAGATA 59.755 50.000 1.67 0.00 0.00 1.98
376 377 0.727398 GTGAACTTGCGGCAGATACC 59.273 55.000 1.67 0.00 0.00 2.73
388 389 3.391049 GGCAGATACCGTATCTTGAACC 58.609 50.000 16.97 12.56 42.70 3.62
389 390 3.069729 GGCAGATACCGTATCTTGAACCT 59.930 47.826 16.97 0.00 42.70 3.50
390 391 4.443034 GGCAGATACCGTATCTTGAACCTT 60.443 45.833 16.97 0.00 42.70 3.50
392 393 6.278363 GCAGATACCGTATCTTGAACCTTAA 58.722 40.000 16.97 0.00 42.70 1.85
393 394 6.200475 GCAGATACCGTATCTTGAACCTTAAC 59.800 42.308 16.97 0.00 42.70 2.01
394 395 7.490000 CAGATACCGTATCTTGAACCTTAACT 58.510 38.462 16.97 0.00 42.70 2.24
395 396 7.435488 CAGATACCGTATCTTGAACCTTAACTG 59.565 40.741 16.97 0.88 42.70 3.16
397 398 6.105397 ACCGTATCTTGAACCTTAACTGAA 57.895 37.500 0.00 0.00 0.00 3.02
398 399 5.930569 ACCGTATCTTGAACCTTAACTGAAC 59.069 40.000 0.00 0.00 0.00 3.18
411 412 8.396272 ACCTTAACTGAACAATGGATATATGC 57.604 34.615 0.00 0.00 0.00 3.14
445 446 1.591248 GCGTGTAAAGCGTCAACATG 58.409 50.000 0.00 0.00 34.07 3.21
449 450 2.032030 GTGTAAAGCGTCAACATGCAGT 60.032 45.455 0.00 0.00 36.94 4.40
454 455 0.247419 GCGTCAACATGCAGTCATCG 60.247 55.000 0.00 0.00 34.29 3.84
463 464 4.820897 ACATGCAGTCATCGTCTTTCTTA 58.179 39.130 0.00 0.00 0.00 2.10
464 465 4.867047 ACATGCAGTCATCGTCTTTCTTAG 59.133 41.667 0.00 0.00 0.00 2.18
467 468 3.860536 GCAGTCATCGTCTTTCTTAGTCC 59.139 47.826 0.00 0.00 0.00 3.85
470 471 4.399934 AGTCATCGTCTTTCTTAGTCCTCC 59.600 45.833 0.00 0.00 0.00 4.30
483 484 6.296803 TCTTAGTCCTCCTCCTTTTGTTTTC 58.703 40.000 0.00 0.00 0.00 2.29
489 490 6.096987 GTCCTCCTCCTTTTGTTTTCTTTTCT 59.903 38.462 0.00 0.00 0.00 2.52
492 493 9.297037 CCTCCTCCTTTTGTTTTCTTTTCTATA 57.703 33.333 0.00 0.00 0.00 1.31
512 513 7.523415 TCTATAAGGTTTTGTCCCAAAGAACT 58.477 34.615 0.00 0.00 0.00 3.01
513 514 8.662255 TCTATAAGGTTTTGTCCCAAAGAACTA 58.338 33.333 0.00 0.00 0.00 2.24
514 515 7.761038 ATAAGGTTTTGTCCCAAAGAACTAG 57.239 36.000 0.00 0.00 0.00 2.57
554 555 6.380190 GGATATATGAGTCGTCACTAACCAC 58.620 44.000 0.00 0.00 34.75 4.16
558 559 1.802960 GAGTCGTCACTAACCACGAGA 59.197 52.381 0.00 0.00 45.30 4.04
563 564 1.338973 GTCACTAACCACGAGACCACA 59.661 52.381 0.00 0.00 0.00 4.17
587 588 7.870445 ACATGGTTTCAACGTTGCTTTATTAAT 59.130 29.630 23.47 6.56 0.00 1.40
588 589 7.630470 TGGTTTCAACGTTGCTTTATTAATG 57.370 32.000 23.47 0.00 0.00 1.90
613 798 9.834628 TGCATAAAGAGAAATTTACTTTTACGG 57.165 29.630 20.25 12.46 35.79 4.02
614 799 9.836076 GCATAAAGAGAAATTTACTTTTACGGT 57.164 29.630 20.25 5.75 35.79 4.83
618 803 9.260002 AAAGAGAAATTTACTTTTACGGTACGA 57.740 29.630 13.56 0.00 41.81 3.43
640 825 1.227556 AACAGCCTGTGTCGACACC 60.228 57.895 38.12 25.86 45.88 4.16
641 826 1.966901 AACAGCCTGTGTCGACACCA 61.967 55.000 38.12 26.53 45.88 4.17
655 840 2.607750 ACCACACGAGGCCTCCAT 60.608 61.111 27.20 12.92 0.00 3.41
657 842 2.202797 CACACGAGGCCTCCATCG 60.203 66.667 27.20 18.49 44.36 3.84
663 848 2.041265 AGGCCTCCATCGACCCTT 59.959 61.111 0.00 0.00 0.00 3.95
686 898 1.298157 CTCTTTGGATGCGGCGTTGA 61.298 55.000 9.37 0.00 0.00 3.18
711 935 7.350744 TCTTTGACTGTAGGTGTGTAGTTTA 57.649 36.000 0.00 0.00 0.00 2.01
722 946 3.824443 GTGTGTAGTTTAAGGGTGGCAAT 59.176 43.478 0.00 0.00 0.00 3.56
750 974 7.384932 GGAAAAGATGTCCGAAATGTGATTTTT 59.615 33.333 0.00 0.00 31.47 1.94
786 1017 7.972832 TCGTTGTGTAAAGTGGATTATTCTT 57.027 32.000 0.00 0.00 0.00 2.52
798 1029 3.557595 GGATTATTCTTGTCAGCCGTGAG 59.442 47.826 0.00 0.00 31.53 3.51
799 1030 3.678056 TTATTCTTGTCAGCCGTGAGT 57.322 42.857 0.00 0.00 31.53 3.41
800 1031 1.800805 ATTCTTGTCAGCCGTGAGTG 58.199 50.000 0.00 0.00 31.53 3.51
801 1032 0.880278 TTCTTGTCAGCCGTGAGTGC 60.880 55.000 0.00 0.00 31.53 4.40
802 1033 2.661537 TTGTCAGCCGTGAGTGCG 60.662 61.111 0.00 0.00 31.53 5.34
811 1042 2.354656 GTGAGTGCGCGTCAGTGA 60.355 61.111 12.21 0.19 0.00 3.41
865 3475 3.545703 AGCTTATAAAACGGCTGCTGAT 58.454 40.909 16.72 0.00 33.50 2.90
907 3523 0.808847 TGCGTGCATCTCAGATCAGC 60.809 55.000 0.00 0.00 0.00 4.26
934 3557 6.015010 GCTACCTAATCATCCAAGAAGAGCTA 60.015 42.308 0.00 0.00 0.00 3.32
936 3559 5.221342 ACCTAATCATCCAAGAAGAGCTACG 60.221 44.000 0.00 0.00 0.00 3.51
937 3560 4.744795 AATCATCCAAGAAGAGCTACGT 57.255 40.909 0.00 0.00 0.00 3.57
938 3561 4.744795 ATCATCCAAGAAGAGCTACGTT 57.255 40.909 0.00 0.00 0.00 3.99
939 3562 4.111375 TCATCCAAGAAGAGCTACGTTC 57.889 45.455 0.00 0.00 0.00 3.95
940 3563 3.509967 TCATCCAAGAAGAGCTACGTTCA 59.490 43.478 0.00 0.00 0.00 3.18
941 3564 3.577649 TCCAAGAAGAGCTACGTTCAG 57.422 47.619 0.00 0.00 0.00 3.02
942 3565 1.996191 CCAAGAAGAGCTACGTTCAGC 59.004 52.381 1.93 1.93 42.12 4.26
952 3575 2.886081 CTACGTTCAGCTGCAGAAGAT 58.114 47.619 20.43 1.90 0.00 2.40
983 3629 4.444838 CGTCCCCGTCCGCATCAA 62.445 66.667 0.00 0.00 0.00 2.57
984 3630 2.046700 GTCCCCGTCCGCATCAAA 60.047 61.111 0.00 0.00 0.00 2.69
998 3675 3.365666 CGCATCAAAACTCATCAAGCACT 60.366 43.478 0.00 0.00 0.00 4.40
1040 3717 2.126424 GGACGTGACGAGGAGCAC 60.126 66.667 13.70 0.00 0.00 4.40
1049 3726 2.270527 GAGGAGCACTGGAAGCCC 59.729 66.667 0.00 0.00 37.60 5.19
1119 3802 2.281761 CCGGTGAGGCAGCTGTTT 60.282 61.111 16.64 3.42 0.00 2.83
1216 3899 2.079020 AAACTTCGACGACGGCCTCA 62.079 55.000 7.55 0.00 40.21 3.86
1420 4130 5.173774 ACTGTTCATACACAAGTTGCTTG 57.826 39.130 1.81 7.27 45.85 4.01
1426 4137 2.939460 ACACAAGTTGCTTGGTGTTC 57.061 45.000 12.66 0.00 44.81 3.18
1440 4151 3.601435 TGGTGTTCAAAGTCTGAAACGA 58.399 40.909 0.00 0.00 45.67 3.85
1468 4187 6.908870 TGAAATGACACAGTGTATCTATGC 57.091 37.500 6.06 0.00 0.00 3.14
1511 4236 3.181487 CCACAGCGGAATGGGATTTAAAG 60.181 47.826 0.00 0.00 36.56 1.85
1513 4238 2.031870 AGCGGAATGGGATTTAAAGCC 58.968 47.619 14.27 14.27 0.00 4.35
1546 4271 3.208594 TGTCGCGCCTAGAATAAGTCTA 58.791 45.455 0.00 0.00 37.84 2.59
1556 4281 0.468648 AATAAGTCTAGCACCCGGGC 59.531 55.000 24.08 7.69 0.00 6.13
1564 4289 4.821589 GCACCCGGGCTTCTCTCG 62.822 72.222 24.08 0.00 0.00 4.04
1573 4298 2.454464 GCTTCTCTCGCTGCTGCTG 61.454 63.158 14.03 0.77 36.97 4.41
1578 4303 1.146957 CTCTCGCTGCTGCTGTCATC 61.147 60.000 14.03 0.00 36.97 2.92
1579 4304 1.153608 CTCGCTGCTGCTGTCATCT 60.154 57.895 14.03 0.00 36.97 2.90
1586 4311 1.205417 TGCTGCTGTCATCTGATTCGA 59.795 47.619 0.00 0.00 0.00 3.71
1587 4312 1.592081 GCTGCTGTCATCTGATTCGAC 59.408 52.381 0.00 2.15 0.00 4.20
1588 4313 1.851053 CTGCTGTCATCTGATTCGACG 59.149 52.381 0.00 0.00 32.17 5.12
1589 4314 1.202348 TGCTGTCATCTGATTCGACGT 59.798 47.619 0.00 0.00 32.17 4.34
1590 4315 1.585668 GCTGTCATCTGATTCGACGTG 59.414 52.381 0.00 0.00 32.17 4.49
1591 4316 1.585668 CTGTCATCTGATTCGACGTGC 59.414 52.381 0.00 0.00 32.17 5.34
1592 4317 1.067915 TGTCATCTGATTCGACGTGCA 60.068 47.619 0.00 0.00 32.17 4.57
1593 4318 1.321743 GTCATCTGATTCGACGTGCAC 59.678 52.381 6.82 6.82 0.00 4.57
1594 4319 0.647410 CATCTGATTCGACGTGCACC 59.353 55.000 12.15 0.00 0.00 5.01
1595 4320 0.460284 ATCTGATTCGACGTGCACCC 60.460 55.000 12.15 2.28 0.00 4.61
1596 4321 2.431771 TGATTCGACGTGCACCCG 60.432 61.111 12.15 15.15 0.00 5.28
1597 4322 2.126228 GATTCGACGTGCACCCGA 60.126 61.111 20.57 20.57 0.00 5.14
1598 4323 2.126071 ATTCGACGTGCACCCGAG 60.126 61.111 22.39 8.23 33.66 4.63
1599 4324 3.642778 ATTCGACGTGCACCCGAGG 62.643 63.158 22.39 7.89 33.66 4.63
1601 4326 4.657824 CGACGTGCACCCGAGGTT 62.658 66.667 18.07 0.00 31.02 3.50
1602 4327 2.280592 GACGTGCACCCGAGGTTT 60.281 61.111 12.15 0.00 31.02 3.27
1653 4381 7.786178 TCCAAATTGATAGAATTACAGTCGG 57.214 36.000 0.00 0.00 0.00 4.79
1667 4395 0.984230 AGTCGGGAGGCAAAAGATCA 59.016 50.000 0.00 0.00 36.50 2.92
1678 4406 5.614308 AGGCAAAAGATCATCGATACATGA 58.386 37.500 0.00 0.00 37.20 3.07
1679 4407 6.057533 AGGCAAAAGATCATCGATACATGAA 58.942 36.000 0.00 0.00 36.36 2.57
1710 4438 2.011548 GCATCCACACAGCCGTGATAA 61.012 52.381 7.16 0.00 46.80 1.75
1712 4440 2.779755 TCCACACAGCCGTGATAAAT 57.220 45.000 7.16 0.00 46.80 1.40
1717 4445 4.816385 CCACACAGCCGTGATAAATTCTAT 59.184 41.667 7.16 0.00 46.80 1.98
1719 4447 5.294306 CACACAGCCGTGATAAATTCTATGT 59.706 40.000 7.16 0.00 46.80 2.29
1742 4470 4.565166 TGACTATAATTTGTCAAGCGGTCG 59.435 41.667 6.27 0.00 39.82 4.79
1756 4484 0.952280 CGGTCGGCAGCTCTATTCTA 59.048 55.000 0.00 0.00 0.00 2.10
1796 4525 2.158943 GGAATAAACTCCCTGTCCCTCG 60.159 54.545 0.00 0.00 0.00 4.63
1803 4532 2.571216 CCCTGTCCCTCGTCAACGT 61.571 63.158 2.09 0.00 40.80 3.99
1804 4533 1.366366 CCTGTCCCTCGTCAACGTT 59.634 57.895 0.00 0.00 40.80 3.99
1831 4560 5.791336 TTTCAGCTACGAGATGTCCATAT 57.209 39.130 0.00 0.00 32.57 1.78
1843 4572 5.371526 AGATGTCCATATGCAGAACGAATT 58.628 37.500 0.00 0.00 0.00 2.17
1870 4599 5.186992 TCCATCTCCTGTCAAACTCGATAAA 59.813 40.000 0.00 0.00 0.00 1.40
1877 4606 4.323417 TGTCAAACTCGATAAAGCCACAT 58.677 39.130 0.00 0.00 0.00 3.21
1886 4615 7.047891 ACTCGATAAAGCCACATTAGAATCAA 58.952 34.615 0.00 0.00 0.00 2.57
1888 4617 7.693952 TCGATAAAGCCACATTAGAATCAAAC 58.306 34.615 0.00 0.00 0.00 2.93
1896 4625 6.363357 GCCACATTAGAATCAAACTGAACAAC 59.637 38.462 0.00 0.00 0.00 3.32
1898 4627 6.578545 CACATTAGAATCAAACTGAACAACCG 59.421 38.462 0.00 0.00 0.00 4.44
1905 4634 1.164041 AACTGAACAACCGCCGGAAG 61.164 55.000 11.71 3.71 0.00 3.46
1944 4674 3.699038 GCAAGTGCCATCCCTTACATAAA 59.301 43.478 0.00 0.00 34.31 1.40
1945 4675 4.342092 GCAAGTGCCATCCCTTACATAAAT 59.658 41.667 0.00 0.00 34.31 1.40
1956 4686 9.017509 CATCCCTTACATAAATGCATGTATCTT 57.982 33.333 6.40 0.12 40.24 2.40
2000 4730 9.286170 TGCAATTAAAAATATACCGGTATGCTA 57.714 29.630 32.87 16.77 0.00 3.49
2022 4752 9.114952 TGCTACAAAAATAATTGATCCGTCATA 57.885 29.630 0.00 0.00 33.56 2.15
2040 4770 1.627864 TATCGCCGGAGAATCATCCA 58.372 50.000 13.28 0.00 39.53 3.41
2042 4772 0.033920 TCGCCGGAGAATCATCCATG 59.966 55.000 5.05 0.00 39.53 3.66
2044 4774 0.535780 GCCGGAGAATCATCCATGCA 60.536 55.000 5.05 0.00 39.53 3.96
2046 4776 1.202734 CCGGAGAATCATCCATGCAGT 60.203 52.381 0.00 0.00 39.53 4.40
2047 4777 2.141517 CGGAGAATCATCCATGCAGTC 58.858 52.381 0.00 0.00 39.53 3.51
2063 4793 4.751093 TCGCGGCGCCAGAATCAA 62.751 61.111 28.98 0.36 0.00 2.57
2069 4799 0.449388 GGCGCCAGAATCAAACTGAG 59.551 55.000 24.80 0.00 37.54 3.35
2084 4814 5.409520 TCAAACTGAGAAAGATCCATCAACG 59.590 40.000 0.00 0.00 0.00 4.10
2097 4827 1.258982 CATCAACGGATAGAGCAACGC 59.741 52.381 0.00 0.00 30.87 4.84
2173 4903 0.319405 AAAGCCCAATCAGCAACTGC 59.681 50.000 0.00 0.00 42.49 4.40
2204 4934 3.937706 CCTTGAGTATTTCCTCAGTGCTG 59.062 47.826 0.00 0.00 42.16 4.41
2214 4944 2.700371 TCCTCAGTGCTGAACTTCTTGA 59.300 45.455 3.36 0.00 39.39 3.02
2221 4951 3.058639 GTGCTGAACTTCTTGACATCACC 60.059 47.826 0.00 0.00 0.00 4.02
2233 4963 7.615582 TCTTGACATCACCAATAGAATTCAC 57.384 36.000 8.44 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.452733 CGAGCACCCGGGGACTTC 62.453 72.222 27.92 15.38 0.00 3.01
6 7 4.682334 TACACGAGCACCCGGGGA 62.682 66.667 27.92 0.00 37.25 4.81
7 8 4.143333 CTACACGAGCACCCGGGG 62.143 72.222 27.92 12.73 37.25 5.73
8 9 3.379445 ACTACACGAGCACCCGGG 61.379 66.667 22.25 22.25 39.19 5.73
9 10 2.126071 CACTACACGAGCACCCGG 60.126 66.667 0.00 0.00 0.00 5.73
10 11 1.588824 TACCACTACACGAGCACCCG 61.589 60.000 0.00 0.00 0.00 5.28
11 12 0.172803 CTACCACTACACGAGCACCC 59.827 60.000 0.00 0.00 0.00 4.61
13 14 0.172803 CCCTACCACTACACGAGCAC 59.827 60.000 0.00 0.00 0.00 4.40
14 15 0.038599 TCCCTACCACTACACGAGCA 59.961 55.000 0.00 0.00 0.00 4.26
15 16 1.067212 CATCCCTACCACTACACGAGC 59.933 57.143 0.00 0.00 0.00 5.03
16 17 1.681793 CCATCCCTACCACTACACGAG 59.318 57.143 0.00 0.00 0.00 4.18
17 18 1.006281 ACCATCCCTACCACTACACGA 59.994 52.381 0.00 0.00 0.00 4.35
18 19 1.136305 CACCATCCCTACCACTACACG 59.864 57.143 0.00 0.00 0.00 4.49
20 21 2.569853 CAACACCATCCCTACCACTACA 59.430 50.000 0.00 0.00 0.00 2.74
21 22 2.570302 ACAACACCATCCCTACCACTAC 59.430 50.000 0.00 0.00 0.00 2.73
22 23 2.910544 ACAACACCATCCCTACCACTA 58.089 47.619 0.00 0.00 0.00 2.74
23 24 1.742308 ACAACACCATCCCTACCACT 58.258 50.000 0.00 0.00 0.00 4.00
24 25 2.159382 CAACAACACCATCCCTACCAC 58.841 52.381 0.00 0.00 0.00 4.16
26 27 1.173913 GCAACAACACCATCCCTACC 58.826 55.000 0.00 0.00 0.00 3.18
27 28 0.802494 CGCAACAACACCATCCCTAC 59.198 55.000 0.00 0.00 0.00 3.18
28 29 0.958382 GCGCAACAACACCATCCCTA 60.958 55.000 0.30 0.00 0.00 3.53
29 30 2.268076 GCGCAACAACACCATCCCT 61.268 57.895 0.30 0.00 0.00 4.20
31 32 1.210155 GAGCGCAACAACACCATCC 59.790 57.895 11.47 0.00 0.00 3.51
33 34 1.951510 CTGAGCGCAACAACACCAT 59.048 52.632 11.47 0.00 0.00 3.55
34 35 2.833533 GCTGAGCGCAACAACACCA 61.834 57.895 11.47 0.00 38.92 4.17
35 36 2.050985 GCTGAGCGCAACAACACC 60.051 61.111 11.47 0.00 38.92 4.16
47 48 1.929836 GCAGGATACAAAGACGCTGAG 59.070 52.381 0.00 0.00 41.41 3.35
48 49 1.405526 GGCAGGATACAAAGACGCTGA 60.406 52.381 0.00 0.00 41.41 4.26
49 50 1.009829 GGCAGGATACAAAGACGCTG 58.990 55.000 0.00 0.00 41.41 5.18
52 53 2.009774 CCAAGGCAGGATACAAAGACG 58.990 52.381 0.00 0.00 41.41 4.18
53 54 3.350219 TCCAAGGCAGGATACAAAGAC 57.650 47.619 0.00 0.00 41.41 3.01
62 63 1.915489 ACACACATATCCAAGGCAGGA 59.085 47.619 0.99 0.99 43.01 3.86
63 64 2.019249 CACACACATATCCAAGGCAGG 58.981 52.381 0.00 0.00 0.00 4.85
67 68 1.737838 ACGCACACACATATCCAAGG 58.262 50.000 0.00 0.00 0.00 3.61
68 69 2.483877 ACAACGCACACACATATCCAAG 59.516 45.455 0.00 0.00 0.00 3.61
69 70 2.225255 CACAACGCACACACATATCCAA 59.775 45.455 0.00 0.00 0.00 3.53
70 71 1.803555 CACAACGCACACACATATCCA 59.196 47.619 0.00 0.00 0.00 3.41
71 72 1.130373 CCACAACGCACACACATATCC 59.870 52.381 0.00 0.00 0.00 2.59
72 73 1.804151 ACCACAACGCACACACATATC 59.196 47.619 0.00 0.00 0.00 1.63
73 74 1.535028 CACCACAACGCACACACATAT 59.465 47.619 0.00 0.00 0.00 1.78
74 75 0.940833 CACCACAACGCACACACATA 59.059 50.000 0.00 0.00 0.00 2.29
75 76 1.723608 CCACCACAACGCACACACAT 61.724 55.000 0.00 0.00 0.00 3.21
76 77 2.402572 CCACCACAACGCACACACA 61.403 57.895 0.00 0.00 0.00 3.72
78 79 3.513438 GCCACCACAACGCACACA 61.513 61.111 0.00 0.00 0.00 3.72
80 81 2.518112 ATGCCACCACAACGCACA 60.518 55.556 0.00 0.00 34.87 4.57
82 83 3.976000 GCATGCCACCACAACGCA 61.976 61.111 6.36 0.00 36.84 5.24
84 85 2.676016 AAACGCATGCCACCACAACG 62.676 55.000 13.15 0.00 0.00 4.10
86 87 1.067084 CAAACGCATGCCACCACAA 59.933 52.632 13.15 0.00 0.00 3.33
87 88 0.819666 TACAAACGCATGCCACCACA 60.820 50.000 13.15 0.00 0.00 4.17
88 89 0.386731 GTACAAACGCATGCCACCAC 60.387 55.000 13.15 0.00 0.00 4.16
89 90 1.519751 GGTACAAACGCATGCCACCA 61.520 55.000 13.15 0.00 31.97 4.17
90 91 1.211709 GGTACAAACGCATGCCACC 59.788 57.895 13.15 6.32 0.00 4.61
91 92 1.154301 CGGTACAAACGCATGCCAC 60.154 57.895 13.15 0.59 0.00 5.01
92 93 2.328856 CCGGTACAAACGCATGCCA 61.329 57.895 13.15 0.00 0.00 4.92
94 95 1.858372 AACCCGGTACAAACGCATGC 61.858 55.000 7.91 7.91 0.00 4.06
95 96 0.109964 CAACCCGGTACAAACGCATG 60.110 55.000 0.00 0.00 0.00 4.06
96 97 0.535553 ACAACCCGGTACAAACGCAT 60.536 50.000 0.00 0.00 0.00 4.73
97 98 0.747283 AACAACCCGGTACAAACGCA 60.747 50.000 0.00 0.00 0.00 5.24
98 99 0.317186 CAACAACCCGGTACAAACGC 60.317 55.000 0.00 0.00 0.00 4.84
100 101 2.422832 TCAACAACAACCCGGTACAAAC 59.577 45.455 0.00 0.00 0.00 2.93
101 102 2.719739 TCAACAACAACCCGGTACAAA 58.280 42.857 0.00 0.00 0.00 2.83
102 103 2.414994 TCAACAACAACCCGGTACAA 57.585 45.000 0.00 0.00 0.00 2.41
103 104 2.496111 GATCAACAACAACCCGGTACA 58.504 47.619 0.00 0.00 0.00 2.90
104 105 1.461897 CGATCAACAACAACCCGGTAC 59.538 52.381 0.00 0.00 0.00 3.34
105 106 1.070445 ACGATCAACAACAACCCGGTA 59.930 47.619 0.00 0.00 0.00 4.02
106 107 0.179040 ACGATCAACAACAACCCGGT 60.179 50.000 0.00 0.00 0.00 5.28
107 108 0.948678 AACGATCAACAACAACCCGG 59.051 50.000 0.00 0.00 0.00 5.73
108 109 1.332375 ACAACGATCAACAACAACCCG 59.668 47.619 0.00 0.00 0.00 5.28
110 111 8.736751 ATATAAAACAACGATCAACAACAACC 57.263 30.769 0.00 0.00 0.00 3.77
119 120 8.714179 CCCGCTTTATATATAAAACAACGATCA 58.286 33.333 16.69 0.00 32.39 2.92
120 121 8.173130 CCCCGCTTTATATATAAAACAACGATC 58.827 37.037 16.69 0.00 32.39 3.69
121 122 7.361457 GCCCCGCTTTATATATAAAACAACGAT 60.361 37.037 16.69 0.00 32.39 3.73
122 123 6.073112 GCCCCGCTTTATATATAAAACAACGA 60.073 38.462 16.69 0.00 32.39 3.85
125 126 7.584122 TTGCCCCGCTTTATATATAAAACAA 57.416 32.000 16.69 11.66 32.39 2.83
126 127 7.584122 TTTGCCCCGCTTTATATATAAAACA 57.416 32.000 16.69 7.57 32.39 2.83
127 128 8.757789 GTTTTTGCCCCGCTTTATATATAAAAC 58.242 33.333 16.69 12.33 32.39 2.43
128 129 8.697292 AGTTTTTGCCCCGCTTTATATATAAAA 58.303 29.630 16.69 0.60 32.39 1.52
130 131 7.826918 AGTTTTTGCCCCGCTTTATATATAA 57.173 32.000 0.81 0.81 0.00 0.98
131 132 7.826918 AAGTTTTTGCCCCGCTTTATATATA 57.173 32.000 0.00 0.00 0.00 0.86
132 133 6.724893 AAGTTTTTGCCCCGCTTTATATAT 57.275 33.333 0.00 0.00 0.00 0.86
133 134 6.532988 AAAGTTTTTGCCCCGCTTTATATA 57.467 33.333 0.00 0.00 0.00 0.86
134 135 5.414789 AAAGTTTTTGCCCCGCTTTATAT 57.585 34.783 0.00 0.00 0.00 0.86
135 136 4.875561 AAAGTTTTTGCCCCGCTTTATA 57.124 36.364 0.00 0.00 0.00 0.98
136 137 3.762407 AAAGTTTTTGCCCCGCTTTAT 57.238 38.095 0.00 0.00 0.00 1.40
137 138 3.545366 AAAAGTTTTTGCCCCGCTTTA 57.455 38.095 0.00 0.00 0.00 1.85
138 139 2.411628 AAAAGTTTTTGCCCCGCTTT 57.588 40.000 0.00 0.00 0.00 3.51
139 140 2.411628 AAAAAGTTTTTGCCCCGCTT 57.588 40.000 12.74 0.00 0.00 4.68
155 156 6.274579 GGTGGAACAAAGATTTACCGAAAAA 58.725 36.000 0.00 0.00 44.16 1.94
156 157 5.221283 GGGTGGAACAAAGATTTACCGAAAA 60.221 40.000 0.00 0.00 44.16 2.29
157 158 4.278919 GGGTGGAACAAAGATTTACCGAAA 59.721 41.667 0.00 0.00 44.16 3.46
158 159 3.822167 GGGTGGAACAAAGATTTACCGAA 59.178 43.478 0.00 0.00 44.16 4.30
159 160 3.414269 GGGTGGAACAAAGATTTACCGA 58.586 45.455 0.00 0.00 44.16 4.69
161 162 3.502356 TGGGGTGGAACAAAGATTTACC 58.498 45.455 0.00 0.00 44.16 2.85
162 163 5.538849 TTTGGGGTGGAACAAAGATTTAC 57.461 39.130 0.00 0.00 44.16 2.01
163 164 5.454045 GCTTTTGGGGTGGAACAAAGATTTA 60.454 40.000 0.00 0.00 44.16 1.40
164 165 4.685848 GCTTTTGGGGTGGAACAAAGATTT 60.686 41.667 0.00 0.00 44.16 2.17
165 166 3.181455 GCTTTTGGGGTGGAACAAAGATT 60.181 43.478 0.00 0.00 44.16 2.40
166 167 2.368548 GCTTTTGGGGTGGAACAAAGAT 59.631 45.455 0.00 0.00 44.16 2.40
167 168 1.760029 GCTTTTGGGGTGGAACAAAGA 59.240 47.619 0.00 0.00 44.16 2.52
168 169 1.762370 AGCTTTTGGGGTGGAACAAAG 59.238 47.619 0.00 0.00 44.16 2.77
169 170 1.872773 AGCTTTTGGGGTGGAACAAA 58.127 45.000 0.00 0.00 44.16 2.83
170 171 1.872773 AAGCTTTTGGGGTGGAACAA 58.127 45.000 0.00 0.00 44.16 2.83
171 172 1.484240 CAAAGCTTTTGGGGTGGAACA 59.516 47.619 9.53 0.00 39.98 3.18
173 174 2.166907 TCAAAGCTTTTGGGGTGGAA 57.833 45.000 9.53 0.00 0.00 3.53
174 175 1.760029 GTTCAAAGCTTTTGGGGTGGA 59.240 47.619 9.53 0.00 0.00 4.02
175 176 1.762370 AGTTCAAAGCTTTTGGGGTGG 59.238 47.619 9.53 0.00 0.00 4.61
176 177 2.168313 ACAGTTCAAAGCTTTTGGGGTG 59.832 45.455 9.53 6.39 0.00 4.61
177 178 2.430694 GACAGTTCAAAGCTTTTGGGGT 59.569 45.455 9.53 4.52 0.00 4.95
180 181 4.747810 AGTTGACAGTTCAAAGCTTTTGG 58.252 39.130 9.53 0.00 43.52 3.28
181 182 7.917505 AGATAAGTTGACAGTTCAAAGCTTTTG 59.082 33.333 9.53 8.02 43.52 2.44
182 183 8.000780 AGATAAGTTGACAGTTCAAAGCTTTT 57.999 30.769 9.53 0.00 43.52 2.27
183 184 7.573968 AGATAAGTTGACAGTTCAAAGCTTT 57.426 32.000 5.69 5.69 43.52 3.51
184 185 7.283127 TGAAGATAAGTTGACAGTTCAAAGCTT 59.717 33.333 0.00 0.00 43.52 3.74
185 186 6.767902 TGAAGATAAGTTGACAGTTCAAAGCT 59.232 34.615 0.00 0.00 43.52 3.74
186 187 6.959361 TGAAGATAAGTTGACAGTTCAAAGC 58.041 36.000 0.00 0.00 43.52 3.51
191 192 9.606631 AGGATAATGAAGATAAGTTGACAGTTC 57.393 33.333 0.00 0.00 0.00 3.01
192 193 9.965902 AAGGATAATGAAGATAAGTTGACAGTT 57.034 29.630 0.00 0.00 0.00 3.16
193 194 9.388506 CAAGGATAATGAAGATAAGTTGACAGT 57.611 33.333 0.00 0.00 0.00 3.55
194 195 9.388506 ACAAGGATAATGAAGATAAGTTGACAG 57.611 33.333 0.00 0.00 0.00 3.51
195 196 9.166173 CACAAGGATAATGAAGATAAGTTGACA 57.834 33.333 0.00 0.00 0.00 3.58
199 200 9.911788 ACATCACAAGGATAATGAAGATAAGTT 57.088 29.630 0.00 0.00 33.95 2.66
200 201 9.911788 AACATCACAAGGATAATGAAGATAAGT 57.088 29.630 0.00 0.00 33.95 2.24
202 203 9.685276 ACAACATCACAAGGATAATGAAGATAA 57.315 29.630 0.00 0.00 33.95 1.75
203 204 9.685276 AACAACATCACAAGGATAATGAAGATA 57.315 29.630 0.00 0.00 33.95 1.98
204 205 8.585471 AACAACATCACAAGGATAATGAAGAT 57.415 30.769 0.00 0.00 33.95 2.40
205 206 8.946085 GTAACAACATCACAAGGATAATGAAGA 58.054 33.333 0.00 0.00 33.95 2.87
206 207 8.729756 TGTAACAACATCACAAGGATAATGAAG 58.270 33.333 0.00 0.00 33.95 3.02
207 208 8.628630 TGTAACAACATCACAAGGATAATGAA 57.371 30.769 0.00 0.00 33.95 2.57
208 209 8.806429 ATGTAACAACATCACAAGGATAATGA 57.194 30.769 0.00 0.00 33.95 2.57
238 239 7.770897 GGTCTTATCCTTAGATCAACAACATGT 59.229 37.037 0.00 0.00 33.67 3.21
239 240 7.770433 TGGTCTTATCCTTAGATCAACAACATG 59.230 37.037 0.00 0.00 30.09 3.21
240 241 7.770897 GTGGTCTTATCCTTAGATCAACAACAT 59.229 37.037 0.00 0.00 34.71 2.71
241 242 7.103641 GTGGTCTTATCCTTAGATCAACAACA 58.896 38.462 0.00 0.00 34.71 3.33
242 243 6.255887 CGTGGTCTTATCCTTAGATCAACAAC 59.744 42.308 0.00 0.00 34.71 3.32
243 244 6.070995 ACGTGGTCTTATCCTTAGATCAACAA 60.071 38.462 0.00 0.00 34.71 2.83
246 247 5.163447 CCACGTGGTCTTATCCTTAGATCAA 60.163 44.000 26.95 0.00 34.71 2.57
247 248 4.341235 CCACGTGGTCTTATCCTTAGATCA 59.659 45.833 26.95 0.00 33.67 2.92
248 249 4.583489 TCCACGTGGTCTTATCCTTAGATC 59.417 45.833 32.74 0.00 36.34 2.75
250 251 3.972133 TCCACGTGGTCTTATCCTTAGA 58.028 45.455 32.74 7.09 36.34 2.10
252 253 3.449737 CCTTCCACGTGGTCTTATCCTTA 59.550 47.826 32.74 7.88 36.34 2.69
253 254 2.236395 CCTTCCACGTGGTCTTATCCTT 59.764 50.000 32.74 0.00 36.34 3.36
254 255 1.831736 CCTTCCACGTGGTCTTATCCT 59.168 52.381 32.74 0.00 36.34 3.24
255 256 1.134491 CCCTTCCACGTGGTCTTATCC 60.134 57.143 32.74 0.00 36.34 2.59
256 257 1.134491 CCCCTTCCACGTGGTCTTATC 60.134 57.143 32.74 0.00 36.34 1.75
257 258 0.909623 CCCCTTCCACGTGGTCTTAT 59.090 55.000 32.74 0.00 36.34 1.73
258 259 0.472352 ACCCCTTCCACGTGGTCTTA 60.472 55.000 32.74 12.31 36.34 2.10
259 260 1.350310 AACCCCTTCCACGTGGTCTT 61.350 55.000 32.74 13.47 36.34 3.01
260 261 1.350310 AAACCCCTTCCACGTGGTCT 61.350 55.000 32.74 8.92 36.34 3.85
261 262 1.149854 AAACCCCTTCCACGTGGTC 59.850 57.895 32.74 0.00 36.34 4.02
263 264 1.152839 ACAAACCCCTTCCACGTGG 60.153 57.895 29.26 29.26 0.00 4.94
265 266 1.227734 CGACAAACCCCTTCCACGT 60.228 57.895 0.00 0.00 0.00 4.49
266 267 0.321298 ATCGACAAACCCCTTCCACG 60.321 55.000 0.00 0.00 0.00 4.94
267 268 1.450025 GATCGACAAACCCCTTCCAC 58.550 55.000 0.00 0.00 0.00 4.02
268 269 0.036765 CGATCGACAAACCCCTTCCA 60.037 55.000 10.26 0.00 0.00 3.53
269 270 1.366854 GCGATCGACAAACCCCTTCC 61.367 60.000 21.57 0.00 0.00 3.46
270 271 0.391263 AGCGATCGACAAACCCCTTC 60.391 55.000 21.57 0.00 0.00 3.46
271 272 0.899720 TAGCGATCGACAAACCCCTT 59.100 50.000 21.57 0.00 0.00 3.95
272 273 0.460311 CTAGCGATCGACAAACCCCT 59.540 55.000 21.57 6.06 0.00 4.79
273 274 0.529992 CCTAGCGATCGACAAACCCC 60.530 60.000 21.57 0.00 0.00 4.95
274 275 0.529992 CCCTAGCGATCGACAAACCC 60.530 60.000 21.57 0.00 0.00 4.11
277 278 0.179111 CAGCCCTAGCGATCGACAAA 60.179 55.000 21.57 0.00 46.67 2.83
279 280 0.464916 TACAGCCCTAGCGATCGACA 60.465 55.000 21.57 3.89 46.67 4.35
280 281 0.666913 TTACAGCCCTAGCGATCGAC 59.333 55.000 21.57 10.46 46.67 4.20
299 300 6.531594 GCAGAAGTAAGCACTTTCAACTTTTT 59.468 34.615 0.05 0.00 45.18 1.94
300 301 6.036470 GCAGAAGTAAGCACTTTCAACTTTT 58.964 36.000 0.05 0.00 45.18 2.27
301 302 5.358160 AGCAGAAGTAAGCACTTTCAACTTT 59.642 36.000 0.05 0.00 45.18 2.66
302 303 4.884164 AGCAGAAGTAAGCACTTTCAACTT 59.116 37.500 0.00 0.00 45.18 2.66
304 305 4.820284 AGCAGAAGTAAGCACTTTCAAC 57.180 40.909 0.00 0.00 45.18 3.18
308 309 5.698545 CAGAGTTAGCAGAAGTAAGCACTTT 59.301 40.000 0.00 0.00 45.18 2.66
310 311 4.282195 ACAGAGTTAGCAGAAGTAAGCACT 59.718 41.667 0.00 0.00 36.19 4.40
311 312 4.387256 CACAGAGTTAGCAGAAGTAAGCAC 59.613 45.833 0.00 0.00 0.00 4.40
312 313 4.280929 TCACAGAGTTAGCAGAAGTAAGCA 59.719 41.667 0.00 0.00 0.00 3.91
313 314 4.810790 TCACAGAGTTAGCAGAAGTAAGC 58.189 43.478 0.00 0.00 0.00 3.09
314 315 6.309980 CACATCACAGAGTTAGCAGAAGTAAG 59.690 42.308 0.00 0.00 0.00 2.34
315 316 6.159293 CACATCACAGAGTTAGCAGAAGTAA 58.841 40.000 0.00 0.00 0.00 2.24
316 317 5.336770 CCACATCACAGAGTTAGCAGAAGTA 60.337 44.000 0.00 0.00 0.00 2.24
317 318 4.562347 CCACATCACAGAGTTAGCAGAAGT 60.562 45.833 0.00 0.00 0.00 3.01
318 319 3.931468 CCACATCACAGAGTTAGCAGAAG 59.069 47.826 0.00 0.00 0.00 2.85
319 320 3.866066 GCCACATCACAGAGTTAGCAGAA 60.866 47.826 0.00 0.00 0.00 3.02
320 321 2.354103 GCCACATCACAGAGTTAGCAGA 60.354 50.000 0.00 0.00 0.00 4.26
322 323 1.625315 AGCCACATCACAGAGTTAGCA 59.375 47.619 0.00 0.00 0.00 3.49
323 324 2.393271 AGCCACATCACAGAGTTAGC 57.607 50.000 0.00 0.00 0.00 3.09
324 325 3.434641 CACAAGCCACATCACAGAGTTAG 59.565 47.826 0.00 0.00 0.00 2.34
325 326 3.181455 ACACAAGCCACATCACAGAGTTA 60.181 43.478 0.00 0.00 0.00 2.24
327 328 1.141657 ACACAAGCCACATCACAGAGT 59.858 47.619 0.00 0.00 0.00 3.24
329 330 1.140652 TGACACAAGCCACATCACAGA 59.859 47.619 0.00 0.00 0.00 3.41
330 331 1.596603 TGACACAAGCCACATCACAG 58.403 50.000 0.00 0.00 0.00 3.66
331 332 2.275134 ATGACACAAGCCACATCACA 57.725 45.000 0.00 0.00 0.00 3.58
333 334 2.861274 TGAATGACACAAGCCACATCA 58.139 42.857 0.00 0.00 0.00 3.07
334 335 3.921119 TTGAATGACACAAGCCACATC 57.079 42.857 0.00 0.00 0.00 3.06
335 336 3.119743 CGATTGAATGACACAAGCCACAT 60.120 43.478 0.00 0.00 31.22 3.21
336 337 2.226200 CGATTGAATGACACAAGCCACA 59.774 45.455 0.00 0.00 31.22 4.17
338 339 2.226200 CACGATTGAATGACACAAGCCA 59.774 45.455 0.00 0.00 31.22 4.75
340 341 3.811722 TCACGATTGAATGACACAAGC 57.188 42.857 0.00 0.00 0.00 4.01
341 342 5.348418 AGTTCACGATTGAATGACACAAG 57.652 39.130 0.00 0.00 43.72 3.16
344 345 3.908382 GCAAGTTCACGATTGAATGACAC 59.092 43.478 0.00 0.00 43.72 3.67
345 346 3.363871 CGCAAGTTCACGATTGAATGACA 60.364 43.478 0.00 0.00 43.72 3.58
346 347 3.155998 CGCAAGTTCACGATTGAATGAC 58.844 45.455 0.00 0.00 43.72 3.06
347 348 2.159430 CCGCAAGTTCACGATTGAATGA 59.841 45.455 0.00 0.00 43.72 2.57
348 349 2.508867 CCGCAAGTTCACGATTGAATG 58.491 47.619 0.00 0.00 43.72 2.67
349 350 1.135689 GCCGCAAGTTCACGATTGAAT 60.136 47.619 0.00 0.00 43.72 2.57
350 351 0.237235 GCCGCAAGTTCACGATTGAA 59.763 50.000 0.00 0.00 39.55 2.69
353 354 0.602638 TCTGCCGCAAGTTCACGATT 60.603 50.000 0.00 0.00 0.00 3.34
354 355 0.391661 ATCTGCCGCAAGTTCACGAT 60.392 50.000 0.00 0.00 0.00 3.73
355 356 0.245266 TATCTGCCGCAAGTTCACGA 59.755 50.000 0.00 0.00 0.00 4.35
356 357 0.370273 GTATCTGCCGCAAGTTCACG 59.630 55.000 0.00 0.00 0.00 4.35
357 358 0.727398 GGTATCTGCCGCAAGTTCAC 59.273 55.000 0.00 0.00 0.00 3.18
358 359 0.739462 CGGTATCTGCCGCAAGTTCA 60.739 55.000 0.00 0.00 45.47 3.18
359 360 2.006772 CGGTATCTGCCGCAAGTTC 58.993 57.895 0.00 0.00 45.47 3.01
360 361 4.201951 CGGTATCTGCCGCAAGTT 57.798 55.556 0.00 0.00 45.47 2.66
367 368 3.069729 AGGTTCAAGATACGGTATCTGCC 59.930 47.826 26.66 23.37 44.44 4.85
371 372 7.486647 TCAGTTAAGGTTCAAGATACGGTATC 58.513 38.462 18.31 18.31 35.41 2.24
372 373 7.414222 TCAGTTAAGGTTCAAGATACGGTAT 57.586 36.000 0.00 0.00 0.00 2.73
374 375 5.733620 TCAGTTAAGGTTCAAGATACGGT 57.266 39.130 0.00 0.00 0.00 4.83
376 377 7.416154 TTGTTCAGTTAAGGTTCAAGATACG 57.584 36.000 0.00 0.00 0.00 3.06
377 378 8.237267 CCATTGTTCAGTTAAGGTTCAAGATAC 58.763 37.037 0.00 0.00 0.00 2.24
380 381 6.361433 TCCATTGTTCAGTTAAGGTTCAAGA 58.639 36.000 0.00 0.00 0.00 3.02
381 382 6.633500 TCCATTGTTCAGTTAAGGTTCAAG 57.367 37.500 0.00 0.00 0.00 3.02
385 386 8.850156 GCATATATCCATTGTTCAGTTAAGGTT 58.150 33.333 0.00 0.00 0.00 3.50
386 387 7.173218 CGCATATATCCATTGTTCAGTTAAGGT 59.827 37.037 0.00 0.00 0.00 3.50
387 388 7.521529 CGCATATATCCATTGTTCAGTTAAGG 58.478 38.462 0.00 0.00 0.00 2.69
388 389 7.017645 GCGCATATATCCATTGTTCAGTTAAG 58.982 38.462 0.30 0.00 0.00 1.85
389 390 6.072728 GGCGCATATATCCATTGTTCAGTTAA 60.073 38.462 10.83 0.00 0.00 2.01
390 391 5.411361 GGCGCATATATCCATTGTTCAGTTA 59.589 40.000 10.83 0.00 0.00 2.24
392 393 3.753272 GGCGCATATATCCATTGTTCAGT 59.247 43.478 10.83 0.00 0.00 3.41
393 394 3.752747 TGGCGCATATATCCATTGTTCAG 59.247 43.478 10.83 0.00 0.00 3.02
394 395 3.501828 GTGGCGCATATATCCATTGTTCA 59.498 43.478 10.83 0.00 31.83 3.18
395 396 3.424829 CGTGGCGCATATATCCATTGTTC 60.425 47.826 10.83 0.00 31.83 3.18
397 398 2.076100 CGTGGCGCATATATCCATTGT 58.924 47.619 10.83 0.00 31.83 2.71
398 399 2.094258 GTCGTGGCGCATATATCCATTG 59.906 50.000 10.83 0.00 31.83 2.82
441 442 3.325293 AGAAAGACGATGACTGCATGT 57.675 42.857 0.00 0.00 34.11 3.21
445 446 3.860536 GGACTAAGAAAGACGATGACTGC 59.139 47.826 0.00 0.00 0.00 4.40
449 450 4.601084 AGGAGGACTAAGAAAGACGATGA 58.399 43.478 0.00 0.00 0.00 2.92
454 455 5.748670 AAAGGAGGAGGACTAAGAAAGAC 57.251 43.478 0.00 0.00 0.00 3.01
463 464 4.797912 AGAAAACAAAAGGAGGAGGACT 57.202 40.909 0.00 0.00 0.00 3.85
464 465 5.854010 AAAGAAAACAAAAGGAGGAGGAC 57.146 39.130 0.00 0.00 0.00 3.85
537 538 1.534163 CTCGTGGTTAGTGACGACTCA 59.466 52.381 0.00 0.00 39.59 3.41
541 542 0.877071 GGTCTCGTGGTTAGTGACGA 59.123 55.000 0.00 0.00 42.10 4.20
542 543 0.594602 TGGTCTCGTGGTTAGTGACG 59.405 55.000 0.00 0.00 34.16 4.35
563 564 7.148656 GCATTAATAAAGCAACGTTGAAACCAT 60.149 33.333 31.62 14.54 0.00 3.55
569 570 8.972262 TTTATGCATTAATAAAGCAACGTTGA 57.028 26.923 31.62 11.27 42.15 3.18
587 588 9.834628 CCGTAAAAGTAAATTTCTCTTTATGCA 57.165 29.630 16.33 0.00 32.22 3.96
588 589 9.836076 ACCGTAAAAGTAAATTTCTCTTTATGC 57.164 29.630 16.33 11.41 32.22 3.14
601 786 3.633235 TGCGTCGTACCGTAAAAGTAAA 58.367 40.909 0.00 0.00 0.00 2.01
611 796 3.475774 GGCTGTTGCGTCGTACCG 61.476 66.667 0.00 0.00 40.82 4.02
613 798 1.663702 ACAGGCTGTTGCGTCGTAC 60.664 57.895 15.88 0.00 40.82 3.67
614 799 1.663388 CACAGGCTGTTGCGTCGTA 60.663 57.895 19.43 0.00 40.82 3.43
615 800 2.967076 CACAGGCTGTTGCGTCGT 60.967 61.111 19.43 0.00 40.82 4.34
616 801 2.943345 GACACAGGCTGTTGCGTCG 61.943 63.158 19.43 8.20 40.82 5.12
618 803 2.967076 CGACACAGGCTGTTGCGT 60.967 61.111 19.43 13.39 40.82 5.24
619 804 2.661537 TCGACACAGGCTGTTGCG 60.662 61.111 24.79 24.79 40.82 4.85
640 825 2.202797 CGATGGAGGCCTCGTGTG 60.203 66.667 26.36 12.56 0.00 3.82
641 826 2.362503 TCGATGGAGGCCTCGTGT 60.363 61.111 26.36 14.42 36.33 4.49
657 842 1.740025 CATCCAAAGAGCGAAAGGGTC 59.260 52.381 0.00 0.00 43.56 4.46
686 898 6.420913 AACTACACACCTACAGTCAAAGAT 57.579 37.500 0.00 0.00 0.00 2.40
711 935 1.132881 TCTTTTCCCATTGCCACCCTT 60.133 47.619 0.00 0.00 0.00 3.95
722 946 3.505680 CACATTTCGGACATCTTTTCCCA 59.494 43.478 0.00 0.00 0.00 4.37
750 974 1.280710 ACACAACGATTAGGCCATGGA 59.719 47.619 18.40 0.00 0.00 3.41
798 1029 4.152625 GCCATCACTGACGCGCAC 62.153 66.667 5.73 0.41 0.00 5.34
824 1055 4.088421 CGGAATTGACGACTCCGG 57.912 61.111 4.60 0.00 46.66 5.14
826 1057 1.140407 CTCGCGGAATTGACGACTCC 61.140 60.000 6.13 0.00 0.00 3.85
827 1058 1.743855 GCTCGCGGAATTGACGACTC 61.744 60.000 6.13 0.00 0.00 3.36
828 1059 1.805945 GCTCGCGGAATTGACGACT 60.806 57.895 6.13 0.00 0.00 4.18
829 1060 1.352156 AAGCTCGCGGAATTGACGAC 61.352 55.000 6.13 0.00 0.00 4.34
830 1061 0.171679 TAAGCTCGCGGAATTGACGA 59.828 50.000 6.13 0.00 0.00 4.20
831 1062 1.209128 ATAAGCTCGCGGAATTGACG 58.791 50.000 6.13 0.00 0.00 4.35
833 1064 4.260051 CGTTTTATAAGCTCGCGGAATTGA 60.260 41.667 6.13 0.00 0.00 2.57
835 1066 3.001939 CCGTTTTATAAGCTCGCGGAATT 59.998 43.478 6.13 0.58 40.04 2.17
865 3475 3.114809 CGTTTGCACAAAATGAAGCTCA 58.885 40.909 0.00 0.00 36.98 4.26
893 3509 2.406130 GTAGCTGCTGATCTGAGATGC 58.594 52.381 13.43 0.00 0.00 3.91
907 3523 6.166984 TCTTCTTGGATGATTAGGTAGCTG 57.833 41.667 4.27 0.00 0.00 4.24
934 3557 1.001293 TGATCTTCTGCAGCTGAACGT 59.999 47.619 20.43 2.86 0.00 3.99
936 3559 2.697654 ACTGATCTTCTGCAGCTGAAC 58.302 47.619 20.43 8.77 35.57 3.18
937 3560 3.766051 TCTACTGATCTTCTGCAGCTGAA 59.234 43.478 20.43 5.87 35.57 3.02
938 3561 3.359950 TCTACTGATCTTCTGCAGCTGA 58.640 45.455 20.43 9.88 35.57 4.26
939 3562 3.708890 CTCTACTGATCTTCTGCAGCTG 58.291 50.000 10.11 10.11 35.57 4.24
940 3563 2.101249 GCTCTACTGATCTTCTGCAGCT 59.899 50.000 9.47 0.00 35.57 4.24
941 3564 2.472816 GCTCTACTGATCTTCTGCAGC 58.527 52.381 9.47 0.00 35.57 5.25
942 3565 2.543445 CGGCTCTACTGATCTTCTGCAG 60.543 54.545 7.63 7.63 38.10 4.41
943 3566 1.406898 CGGCTCTACTGATCTTCTGCA 59.593 52.381 0.00 0.00 0.00 4.41
952 3575 0.745845 GGGACGTACGGCTCTACTGA 60.746 60.000 22.53 0.00 0.00 3.41
998 3675 2.342406 TCCTCCCAGAAACTCCATCA 57.658 50.000 0.00 0.00 0.00 3.07
1040 3717 1.590932 CATCATCTTCGGGCTTCCAG 58.409 55.000 0.00 0.00 0.00 3.86
1049 3726 1.409064 TCTTCCCGTCCATCATCTTCG 59.591 52.381 0.00 0.00 0.00 3.79
1119 3802 4.373116 GCGCGTCTCACCCTCCAA 62.373 66.667 8.43 0.00 0.00 3.53
1159 3842 3.138406 GTCGTACCCGAAGCTTACGGT 62.138 57.143 25.44 22.20 46.26 4.83
1164 3847 0.896940 TGAGGTCGTACCCGAAGCTT 60.897 55.000 0.00 0.00 46.26 3.74
1256 3943 5.755861 ACTGAGAAGAAGAAAAAGAAGACGG 59.244 40.000 0.00 0.00 0.00 4.79
1374 4084 7.772757 AGTACTGTCTAATACTACTACCACACC 59.227 40.741 0.00 0.00 29.70 4.16
1420 4130 3.242641 GGTCGTTTCAGACTTTGAACACC 60.243 47.826 0.00 0.00 45.22 4.16
1426 4137 4.811555 TCATTGGTCGTTTCAGACTTTG 57.188 40.909 0.00 0.00 40.76 2.77
1440 4151 6.240894 AGATACACTGTGTCATTTCATTGGT 58.759 36.000 17.99 0.00 0.00 3.67
1468 4187 2.125753 GTGAGGGCTCGCTGACAG 60.126 66.667 0.00 0.00 37.16 3.51
1511 4236 2.440501 CGCGACATAAACAGAAATGGC 58.559 47.619 0.00 0.00 0.00 4.40
1513 4238 2.095853 AGGCGCGACATAAACAGAAATG 59.904 45.455 17.71 0.00 0.00 2.32
1546 4271 3.394836 GAGAGAAGCCCGGGTGCT 61.395 66.667 24.63 16.93 45.43 4.40
1553 4278 2.511145 CAGCAGCGAGAGAAGCCC 60.511 66.667 0.00 0.00 33.67 5.19
1564 4289 1.331138 GAATCAGATGACAGCAGCAGC 59.669 52.381 0.00 0.00 42.56 5.25
1573 4298 1.321743 GTGCACGTCGAATCAGATGAC 59.678 52.381 0.00 0.00 0.00 3.06
1578 4303 2.444624 CGGGTGCACGTCGAATCAG 61.445 63.158 21.47 0.00 0.00 2.90
1579 4304 2.431771 CGGGTGCACGTCGAATCA 60.432 61.111 21.47 0.00 0.00 2.57
1586 4311 2.280592 GAAACCTCGGGTGCACGT 60.281 61.111 11.45 0.00 35.34 4.49
1587 4312 1.164041 AAAGAAACCTCGGGTGCACG 61.164 55.000 11.45 0.00 35.34 5.34
1588 4313 1.029681 AAAAGAAACCTCGGGTGCAC 58.970 50.000 8.80 8.80 35.34 4.57
1589 4314 1.770294 AAAAAGAAACCTCGGGTGCA 58.230 45.000 0.00 0.00 35.34 4.57
1643 4371 2.304761 TCTTTTGCCTCCCGACTGTAAT 59.695 45.455 0.00 0.00 0.00 1.89
1653 4381 4.380531 TGTATCGATGATCTTTTGCCTCC 58.619 43.478 8.54 0.00 0.00 4.30
1667 4395 5.105554 GCATCTAGGACCTTCATGTATCGAT 60.106 44.000 0.00 2.16 0.00 3.59
1678 4406 2.171448 GTGTGGATGCATCTAGGACCTT 59.829 50.000 25.28 0.00 0.00 3.50
1679 4407 1.765314 GTGTGGATGCATCTAGGACCT 59.235 52.381 25.28 0.00 0.00 3.85
1712 4440 8.817100 CGCTTGACAAATTATAGTCACATAGAA 58.183 33.333 7.55 0.00 43.80 2.10
1717 4445 5.242434 ACCGCTTGACAAATTATAGTCACA 58.758 37.500 7.55 1.46 43.80 3.58
1719 4447 4.565166 CGACCGCTTGACAAATTATAGTCA 59.435 41.667 4.69 4.69 42.55 3.41
1732 4460 4.742201 GAGCTGCCGACCGCTTGA 62.742 66.667 0.00 0.00 36.45 3.02
1742 4470 5.948742 ATAGGGATTAGAATAGAGCTGCC 57.051 43.478 0.00 0.00 0.00 4.85
1789 4518 4.737353 AATTAAAACGTTGACGAGGGAC 57.263 40.909 10.87 0.00 43.02 4.46
1796 4525 6.357198 TCGTAGCTGAAATTAAAACGTTGAC 58.643 36.000 0.00 0.00 0.00 3.18
1803 4532 6.876789 TGGACATCTCGTAGCTGAAATTAAAA 59.123 34.615 0.00 0.00 0.00 1.52
1804 4533 6.403049 TGGACATCTCGTAGCTGAAATTAAA 58.597 36.000 0.00 0.00 0.00 1.52
1831 4560 4.816385 GGAGATGGATTAATTCGTTCTGCA 59.184 41.667 11.07 0.00 30.01 4.41
1843 4572 4.709886 TCGAGTTTGACAGGAGATGGATTA 59.290 41.667 0.00 0.00 0.00 1.75
1870 4599 5.769662 TGTTCAGTTTGATTCTAATGTGGCT 59.230 36.000 0.00 0.00 0.00 4.75
1877 4606 4.023536 GGCGGTTGTTCAGTTTGATTCTAA 60.024 41.667 0.00 0.00 0.00 2.10
1886 4615 1.153127 TTCCGGCGGTTGTTCAGTT 60.153 52.632 27.32 0.00 0.00 3.16
1888 4617 0.673644 ATCTTCCGGCGGTTGTTCAG 60.674 55.000 27.32 12.84 0.00 3.02
1896 4625 1.815421 CACTCCAATCTTCCGGCGG 60.815 63.158 22.51 22.51 0.00 6.13
1898 4627 0.804989 CAACACTCCAATCTTCCGGC 59.195 55.000 0.00 0.00 0.00 6.13
1905 4634 5.447818 GCACTTGCTATACAACACTCCAATC 60.448 44.000 0.00 0.00 38.21 2.67
2000 4730 7.803189 GCGATATGACGGATCAATTATTTTTGT 59.197 33.333 0.00 0.00 38.69 2.83
2022 4752 0.979665 ATGGATGATTCTCCGGCGAT 59.020 50.000 9.30 0.00 38.21 4.58
2046 4776 4.751093 TTGATTCTGGCGCCGCGA 62.751 61.111 23.90 18.21 0.00 5.87
2047 4777 3.798650 TTTGATTCTGGCGCCGCG 61.799 61.111 23.90 15.91 0.00 6.46
2063 4793 4.020218 TCCGTTGATGGATCTTTCTCAGTT 60.020 41.667 0.00 0.00 31.53 3.16
2069 4799 4.688413 GCTCTATCCGTTGATGGATCTTTC 59.312 45.833 7.99 0.00 45.80 2.62
2084 4814 2.813779 CAAACTGCGTTGCTCTATCC 57.186 50.000 0.00 0.00 0.00 2.59
2097 4827 0.670162 CCACCTCCAACTGCAAACTG 59.330 55.000 0.00 0.00 0.00 3.16
2104 4834 1.604593 CCTTGGCCACCTCCAACTG 60.605 63.158 3.88 0.00 40.92 3.16
2108 4838 1.850289 TAAGCCTTGGCCACCTCCA 60.850 57.895 3.88 0.00 0.00 3.86
2140 4870 1.576421 GCTTTGCCCGAAGTGTGAG 59.424 57.895 0.00 0.00 0.00 3.51
2173 4903 7.346471 TGAGGAAATACTCAAGGGGAAAATAG 58.654 38.462 0.00 0.00 44.03 1.73
2174 4904 7.036863 ACTGAGGAAATACTCAAGGGGAAAATA 60.037 37.037 0.00 0.00 46.05 1.40
2183 4913 4.825422 TCAGCACTGAGGAAATACTCAAG 58.175 43.478 0.00 0.00 46.05 3.02
2204 4934 7.672983 TTCTATTGGTGATGTCAAGAAGTTC 57.327 36.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.