Multiple sequence alignment - TraesCS1D01G146000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G146000 chr1D 100.000 4340 0 0 1 4340 201589839 201594178 0.000000e+00 8015.0
1 TraesCS1D01G146000 chr1B 94.478 3658 128 33 264 3894 289306080 289309690 0.000000e+00 5568.0
2 TraesCS1D01G146000 chr1B 92.674 273 16 1 3818 4090 289309760 289310028 1.460000e-104 390.0
3 TraesCS1D01G146000 chr1B 96.774 186 1 1 1 181 289301892 289302077 5.450000e-79 305.0
4 TraesCS1D01G146000 chr1B 96.364 55 2 0 180 234 289302100 289302154 1.660000e-14 91.6
5 TraesCS1D01G146000 chr1B 92.063 63 2 2 3896 3958 502217088 502217147 7.730000e-13 86.1
6 TraesCS1D01G146000 chr1A 95.774 3455 93 28 472 3894 255871615 255875048 0.000000e+00 5522.0
7 TraesCS1D01G146000 chr1A 88.363 507 16 12 1 468 255870947 255871449 1.750000e-158 569.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G146000 chr1D 201589839 201594178 4339 False 8015.00 8015 100.0000 1 4340 1 chr1D.!!$F1 4339
1 TraesCS1D01G146000 chr1B 289301892 289310028 8136 False 1588.65 5568 95.0725 1 4090 4 chr1B.!!$F2 4089
2 TraesCS1D01G146000 chr1A 255870947 255875048 4101 False 3045.50 5522 92.0685 1 3894 2 chr1A.!!$F1 3893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 4611 0.371301 CATGAACGGTGCGAGTCATG 59.629 55.0 5.61 5.61 41.76 3.07 F
514 4612 0.740868 ATGAACGGTGCGAGTCATGG 60.741 55.0 0.00 0.00 35.33 3.66 F
1848 5980 1.155889 TTGCATTCTACAGGCGTGTG 58.844 50.0 21.78 11.65 37.52 3.82 F
2297 6429 0.038251 CAGACGGAGCAGCAACAGTA 60.038 55.0 0.00 0.00 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1848 5980 0.528684 GAGAGACCAGGTACGCATGC 60.529 60.000 7.91 7.91 0.00 4.06 R
2100 6232 1.444724 CGCACCCGACGACATGTTA 60.445 57.895 0.00 0.00 36.29 2.41 R
3184 7342 1.450848 TCGTCGTATCAGAGCCGGT 60.451 57.895 1.90 0.00 0.00 5.28 R
4143 8463 0.037046 GGGAAGAGCCGGACGTTTTA 60.037 55.000 5.05 0.00 37.63 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
195 228 2.991540 GCCAACCAAGGTGCTCCC 60.992 66.667 0.00 0.00 0.00 4.30
469 4405 4.084433 CCAAAGATCGCCAAAATTGTTGTG 60.084 41.667 0.00 0.00 0.00 3.33
505 4603 1.212616 CTAGCTAGCATGAACGGTGC 58.787 55.000 18.83 0.00 42.81 5.01
506 4604 0.527600 TAGCTAGCATGAACGGTGCG 60.528 55.000 18.83 0.00 46.86 5.34
507 4605 1.809619 GCTAGCATGAACGGTGCGA 60.810 57.895 10.63 0.00 46.86 5.10
508 4606 1.756375 GCTAGCATGAACGGTGCGAG 61.756 60.000 10.63 4.24 46.86 5.03
509 4607 0.458543 CTAGCATGAACGGTGCGAGT 60.459 55.000 0.00 0.00 46.86 4.18
510 4608 0.457853 TAGCATGAACGGTGCGAGTC 60.458 55.000 0.00 0.00 46.86 3.36
511 4609 2.027073 GCATGAACGGTGCGAGTCA 61.027 57.895 0.00 0.00 32.29 3.41
512 4610 1.361668 GCATGAACGGTGCGAGTCAT 61.362 55.000 0.00 0.00 36.33 3.06
513 4611 0.371301 CATGAACGGTGCGAGTCATG 59.629 55.000 5.61 5.61 41.76 3.07
514 4612 0.740868 ATGAACGGTGCGAGTCATGG 60.741 55.000 0.00 0.00 35.33 3.66
515 4613 1.374252 GAACGGTGCGAGTCATGGT 60.374 57.895 0.00 0.00 0.00 3.55
537 4650 5.405571 GGTGGTACATACATCGCTTAATCAG 59.594 44.000 0.00 0.00 44.52 2.90
549 4664 4.707448 TCGCTTAATCAGGAAGTCTCTCTT 59.293 41.667 0.00 0.00 39.32 2.85
570 4695 2.699954 TCTCAAGAAAAGATCGGGCAC 58.300 47.619 0.00 0.00 0.00 5.01
572 4697 2.813754 CTCAAGAAAAGATCGGGCACAA 59.186 45.455 0.00 0.00 0.00 3.33
580 4705 2.056481 GATCGGGCACAAGCATGAGC 62.056 60.000 2.55 2.55 44.61 4.26
595 4720 1.298157 TGAGCGCGTTGGAATCAAGG 61.298 55.000 8.43 0.00 40.54 3.61
702 4827 2.304761 TCTTGGATAGACAAGGCGGTTT 59.695 45.455 6.15 0.00 46.04 3.27
939 5067 3.197766 TCTCATGGCCTATAATTAGCCCG 59.802 47.826 3.32 3.92 0.00 6.13
1040 5168 3.436243 TCTCTTCCTCTTCCTCTTCCAC 58.564 50.000 0.00 0.00 0.00 4.02
1780 5912 5.798132 TGATCATGTAGATTGTAGGATGCC 58.202 41.667 0.00 0.00 37.00 4.40
1848 5980 1.155889 TTGCATTCTACAGGCGTGTG 58.844 50.000 21.78 11.65 37.52 3.82
1892 6024 1.764723 TGATCGGAGTTGAGGCATGAT 59.235 47.619 0.00 0.00 0.00 2.45
1984 6116 2.507102 ACTTCTGCGACGATGGCG 60.507 61.111 0.00 0.00 44.79 5.69
2115 6247 0.526954 GCGATAACATGTCGTCGGGT 60.527 55.000 24.94 2.68 40.98 5.28
2238 6370 1.078656 GAGCTCCTCCTCCCCATAGAT 59.921 57.143 0.87 0.00 0.00 1.98
2297 6429 0.038251 CAGACGGAGCAGCAACAGTA 60.038 55.000 0.00 0.00 0.00 2.74
2407 6539 1.327690 GCTCACCTCGGGATACACCA 61.328 60.000 0.00 0.00 41.20 4.17
2525 6675 2.357760 GGCGACGCAAGGGTGTTA 60.358 61.111 23.09 0.00 46.39 2.41
2526 6676 2.674084 GGCGACGCAAGGGTGTTAC 61.674 63.158 23.09 0.00 46.39 2.50
2527 6677 3.007070 GCGACGCAAGGGTGTTACG 62.007 63.158 16.42 0.00 46.39 3.18
2528 6678 2.858158 GACGCAAGGGTGTTACGC 59.142 61.111 0.00 0.00 46.39 4.42
2530 6680 3.784412 CGCAAGGGTGTTACGCGG 61.784 66.667 12.47 0.00 42.13 6.46
2531 6681 4.097863 GCAAGGGTGTTACGCGGC 62.098 66.667 12.47 0.03 36.04 6.53
2532 6682 3.784412 CAAGGGTGTTACGCGGCG 61.784 66.667 22.36 22.36 36.04 6.46
2755 6911 0.103208 GTAGGACAGAGCATGACCGG 59.897 60.000 0.00 0.00 46.89 5.28
2777 6933 2.049228 CGTTTCGCGGTGGTATAGATC 58.951 52.381 6.13 0.00 36.85 2.75
2968 7124 3.573538 CACCAAACCAGAATCAATCACCA 59.426 43.478 0.00 0.00 0.00 4.17
2974 7130 7.546667 CCAAACCAGAATCAATCACCATTAAAG 59.453 37.037 0.00 0.00 0.00 1.85
3184 7342 3.193056 TCAAATTTCATCAATCGCCAGCA 59.807 39.130 0.00 0.00 0.00 4.41
3203 7361 1.009900 CCGGCTCTGATACGACGAC 60.010 63.158 0.00 0.00 0.00 4.34
3204 7362 1.367782 CGGCTCTGATACGACGACG 60.368 63.158 5.58 5.58 45.75 5.12
3206 7364 0.316032 GGCTCTGATACGACGACGAC 60.316 60.000 15.32 5.71 42.66 4.34
3208 7366 0.919300 CTCTGATACGACGACGACGA 59.081 55.000 25.15 10.01 42.66 4.20
3209 7367 0.919300 TCTGATACGACGACGACGAG 59.081 55.000 25.15 12.39 42.66 4.18
3210 7368 0.651042 CTGATACGACGACGACGAGC 60.651 60.000 25.15 12.32 42.66 5.03
3211 7369 1.346197 GATACGACGACGACGAGCA 59.654 57.895 25.15 10.59 42.66 4.26
3212 7370 0.042361 GATACGACGACGACGAGCAT 60.042 55.000 25.15 14.43 42.66 3.79
3216 7374 1.134901 GACGACGACGAGCATGTCT 59.865 57.895 15.32 0.00 42.66 3.41
3381 7543 3.096092 AGCCCGCTAATTCCATTTTTCA 58.904 40.909 0.00 0.00 0.00 2.69
3570 7733 1.896220 TGCAGGTGAATGTGAGGTTC 58.104 50.000 0.00 0.00 0.00 3.62
3703 7875 6.705302 TGTAGGGATACAGGTAGACTATACG 58.295 44.000 0.00 0.00 39.74 3.06
3756 7933 8.854979 TGAATTGTTGCTGCAATACATTATAC 57.145 30.769 19.11 3.32 38.03 1.47
3757 7934 8.685427 TGAATTGTTGCTGCAATACATTATACT 58.315 29.630 19.11 0.00 38.03 2.12
3814 7991 2.002586 GTAGAGTCGGTGTAGCGTGTA 58.997 52.381 3.29 0.00 0.00 2.90
3822 7999 1.504359 GTGTAGCGTGTAGGTGCAAA 58.496 50.000 0.00 0.00 44.07 3.68
3882 8202 6.547493 GAATAATTCGTTTATGCGTTGCAA 57.453 33.333 0.00 0.00 43.62 4.08
3925 8245 5.848406 TGGCTTGGTTTCGTTAATGAAATT 58.152 33.333 22.33 0.00 39.80 1.82
3950 8270 1.120530 GATCACCCCCTCTTTCGCTA 58.879 55.000 0.00 0.00 0.00 4.26
3951 8271 1.485066 GATCACCCCCTCTTTCGCTAA 59.515 52.381 0.00 0.00 0.00 3.09
3988 8308 0.110056 CCGCAACTCATCAAGTGTGC 60.110 55.000 0.00 0.00 38.58 4.57
4015 8335 4.731313 ATTCAAAGAGGGAGGTGTCTTT 57.269 40.909 0.00 0.00 42.51 2.52
4028 8348 2.159085 GGTGTCTTTATGTCTCCCGAGG 60.159 54.545 0.00 0.00 0.00 4.63
4031 8351 2.168728 GTCTTTATGTCTCCCGAGGCTT 59.831 50.000 0.00 0.00 33.37 4.35
4049 8369 0.324738 TTGAGGTCTCTCCCATCGCT 60.325 55.000 0.00 0.00 39.23 4.93
4099 8419 4.086547 GGCAACCTTGGGCATGGC 62.087 66.667 11.56 11.56 33.04 4.40
4100 8420 4.440127 GCAACCTTGGGCATGGCG 62.440 66.667 13.76 1.49 0.00 5.69
4101 8421 2.990967 CAACCTTGGGCATGGCGT 60.991 61.111 13.76 2.19 0.00 5.68
4102 8422 2.990967 AACCTTGGGCATGGCGTG 60.991 61.111 13.76 1.31 0.00 5.34
4103 8423 3.505790 AACCTTGGGCATGGCGTGA 62.506 57.895 11.71 0.41 0.00 4.35
4104 8424 2.676121 CCTTGGGCATGGCGTGAA 60.676 61.111 11.71 5.10 0.00 3.18
4105 8425 2.703798 CCTTGGGCATGGCGTGAAG 61.704 63.158 11.71 13.92 0.00 3.02
4106 8426 1.973281 CTTGGGCATGGCGTGAAGT 60.973 57.895 11.71 0.00 0.00 3.01
4107 8427 2.203972 CTTGGGCATGGCGTGAAGTG 62.204 60.000 11.71 0.00 0.00 3.16
4108 8428 2.359850 GGGCATGGCGTGAAGTGA 60.360 61.111 11.71 0.00 0.00 3.41
4109 8429 2.690778 GGGCATGGCGTGAAGTGAC 61.691 63.158 11.71 0.00 0.00 3.67
4110 8430 1.965930 GGCATGGCGTGAAGTGACA 60.966 57.895 11.71 0.00 0.00 3.58
4111 8431 1.499056 GCATGGCGTGAAGTGACAG 59.501 57.895 11.71 0.00 0.00 3.51
4112 8432 1.230635 GCATGGCGTGAAGTGACAGT 61.231 55.000 11.71 0.00 0.00 3.55
4113 8433 1.939381 GCATGGCGTGAAGTGACAGTA 60.939 52.381 11.71 0.00 0.00 2.74
4114 8434 1.995484 CATGGCGTGAAGTGACAGTAG 59.005 52.381 0.00 0.00 0.00 2.57
4115 8435 1.037493 TGGCGTGAAGTGACAGTAGT 58.963 50.000 0.00 0.00 0.00 2.73
4116 8436 1.411246 TGGCGTGAAGTGACAGTAGTT 59.589 47.619 0.00 0.00 0.00 2.24
4117 8437 2.159014 TGGCGTGAAGTGACAGTAGTTT 60.159 45.455 0.00 0.00 0.00 2.66
4118 8438 2.870411 GGCGTGAAGTGACAGTAGTTTT 59.130 45.455 0.00 0.00 0.00 2.43
4119 8439 3.311596 GGCGTGAAGTGACAGTAGTTTTT 59.688 43.478 0.00 0.00 0.00 1.94
4120 8440 4.515432 GCGTGAAGTGACAGTAGTTTTTC 58.485 43.478 0.00 0.00 0.00 2.29
4121 8441 4.033587 GCGTGAAGTGACAGTAGTTTTTCA 59.966 41.667 0.00 0.00 0.00 2.69
4122 8442 5.728255 CGTGAAGTGACAGTAGTTTTTCAG 58.272 41.667 0.00 0.00 0.00 3.02
4123 8443 5.518847 CGTGAAGTGACAGTAGTTTTTCAGA 59.481 40.000 0.00 0.00 0.00 3.27
4124 8444 6.201044 CGTGAAGTGACAGTAGTTTTTCAGAT 59.799 38.462 0.00 0.00 0.00 2.90
4125 8445 7.254455 CGTGAAGTGACAGTAGTTTTTCAGATT 60.254 37.037 0.00 0.00 0.00 2.40
4126 8446 8.398665 GTGAAGTGACAGTAGTTTTTCAGATTT 58.601 33.333 0.00 0.00 0.00 2.17
4127 8447 8.956426 TGAAGTGACAGTAGTTTTTCAGATTTT 58.044 29.630 0.00 0.00 0.00 1.82
4128 8448 9.439537 GAAGTGACAGTAGTTTTTCAGATTTTC 57.560 33.333 0.00 0.00 0.00 2.29
4129 8449 7.931275 AGTGACAGTAGTTTTTCAGATTTTCC 58.069 34.615 0.00 0.00 0.00 3.13
4130 8450 7.556275 AGTGACAGTAGTTTTTCAGATTTTCCA 59.444 33.333 0.00 0.00 0.00 3.53
4131 8451 8.188139 GTGACAGTAGTTTTTCAGATTTTCCAA 58.812 33.333 0.00 0.00 0.00 3.53
4132 8452 8.188139 TGACAGTAGTTTTTCAGATTTTCCAAC 58.812 33.333 0.00 0.00 0.00 3.77
4133 8453 8.293699 ACAGTAGTTTTTCAGATTTTCCAACT 57.706 30.769 0.00 0.00 0.00 3.16
4134 8454 8.190784 ACAGTAGTTTTTCAGATTTTCCAACTG 58.809 33.333 0.00 0.00 35.43 3.16
4135 8455 7.649306 CAGTAGTTTTTCAGATTTTCCAACTGG 59.351 37.037 0.00 0.00 33.19 4.00
4136 8456 6.544928 AGTTTTTCAGATTTTCCAACTGGT 57.455 33.333 0.00 0.00 36.34 4.00
4137 8457 6.946340 AGTTTTTCAGATTTTCCAACTGGTT 58.054 32.000 0.00 0.00 36.34 3.67
4138 8458 8.073467 AGTTTTTCAGATTTTCCAACTGGTTA 57.927 30.769 0.00 0.00 36.34 2.85
4139 8459 8.536175 AGTTTTTCAGATTTTCCAACTGGTTAA 58.464 29.630 0.00 0.00 36.34 2.01
4140 8460 8.600625 GTTTTTCAGATTTTCCAACTGGTTAAC 58.399 33.333 0.00 0.00 36.34 2.01
4141 8461 6.399639 TTCAGATTTTCCAACTGGTTAACC 57.600 37.500 18.27 18.27 36.34 2.85
4142 8462 5.701224 TCAGATTTTCCAACTGGTTAACCT 58.299 37.500 24.78 3.18 36.82 3.50
4143 8463 6.133356 TCAGATTTTCCAACTGGTTAACCTT 58.867 36.000 24.78 9.64 36.82 3.50
4144 8464 7.291566 TCAGATTTTCCAACTGGTTAACCTTA 58.708 34.615 24.78 5.34 36.82 2.69
4145 8465 7.780745 TCAGATTTTCCAACTGGTTAACCTTAA 59.219 33.333 24.78 4.58 36.82 1.85
4146 8466 8.417884 CAGATTTTCCAACTGGTTAACCTTAAA 58.582 33.333 24.78 13.55 36.82 1.52
4147 8467 8.983789 AGATTTTCCAACTGGTTAACCTTAAAA 58.016 29.630 24.78 18.76 36.82 1.52
4148 8468 8.951787 ATTTTCCAACTGGTTAACCTTAAAAC 57.048 30.769 24.78 0.00 36.82 2.43
4149 8469 5.754543 TCCAACTGGTTAACCTTAAAACG 57.245 39.130 24.78 7.18 36.82 3.60
4150 8470 5.192176 TCCAACTGGTTAACCTTAAAACGT 58.808 37.500 24.78 8.07 36.82 3.99
4151 8471 5.296531 TCCAACTGGTTAACCTTAAAACGTC 59.703 40.000 24.78 0.00 36.82 4.34
4152 8472 5.506151 CCAACTGGTTAACCTTAAAACGTCC 60.506 44.000 24.78 0.00 36.82 4.79
4153 8473 3.809279 ACTGGTTAACCTTAAAACGTCCG 59.191 43.478 24.78 0.00 36.82 4.79
4154 8474 3.137533 TGGTTAACCTTAAAACGTCCGG 58.862 45.455 24.78 0.00 36.82 5.14
4155 8475 2.095768 GGTTAACCTTAAAACGTCCGGC 60.096 50.000 17.83 0.00 0.00 6.13
4156 8476 2.807967 GTTAACCTTAAAACGTCCGGCT 59.192 45.455 0.00 0.00 0.00 5.52
4157 8477 1.516161 AACCTTAAAACGTCCGGCTC 58.484 50.000 0.00 0.00 0.00 4.70
4158 8478 0.683412 ACCTTAAAACGTCCGGCTCT 59.317 50.000 0.00 0.00 0.00 4.09
4159 8479 1.071228 ACCTTAAAACGTCCGGCTCTT 59.929 47.619 0.00 0.00 0.00 2.85
4160 8480 1.730612 CCTTAAAACGTCCGGCTCTTC 59.269 52.381 0.00 0.00 0.00 2.87
4161 8481 1.730612 CTTAAAACGTCCGGCTCTTCC 59.269 52.381 0.00 0.00 0.00 3.46
4162 8482 0.037046 TAAAACGTCCGGCTCTTCCC 60.037 55.000 0.00 0.00 0.00 3.97
4163 8483 1.765597 AAAACGTCCGGCTCTTCCCT 61.766 55.000 0.00 0.00 0.00 4.20
4164 8484 1.765597 AAACGTCCGGCTCTTCCCTT 61.766 55.000 0.00 0.00 0.00 3.95
4165 8485 0.901580 AACGTCCGGCTCTTCCCTTA 60.902 55.000 0.00 0.00 0.00 2.69
4166 8486 0.686769 ACGTCCGGCTCTTCCCTTAT 60.687 55.000 0.00 0.00 0.00 1.73
4167 8487 1.325355 CGTCCGGCTCTTCCCTTATA 58.675 55.000 0.00 0.00 0.00 0.98
4168 8488 1.893801 CGTCCGGCTCTTCCCTTATAT 59.106 52.381 0.00 0.00 0.00 0.86
4169 8489 2.094649 CGTCCGGCTCTTCCCTTATATC 60.095 54.545 0.00 0.00 0.00 1.63
4170 8490 2.094649 GTCCGGCTCTTCCCTTATATCG 60.095 54.545 0.00 0.00 0.00 2.92
4171 8491 2.168496 CCGGCTCTTCCCTTATATCGA 58.832 52.381 0.00 0.00 0.00 3.59
4172 8492 2.094649 CCGGCTCTTCCCTTATATCGAC 60.095 54.545 0.00 0.00 0.00 4.20
4173 8493 2.557056 CGGCTCTTCCCTTATATCGACA 59.443 50.000 0.00 0.00 0.00 4.35
4174 8494 3.193691 CGGCTCTTCCCTTATATCGACAT 59.806 47.826 0.00 0.00 0.00 3.06
4175 8495 4.398358 CGGCTCTTCCCTTATATCGACATA 59.602 45.833 0.00 0.00 0.00 2.29
4176 8496 5.067936 CGGCTCTTCCCTTATATCGACATAT 59.932 44.000 0.00 0.00 0.00 1.78
4177 8497 6.262496 CGGCTCTTCCCTTATATCGACATATA 59.738 42.308 0.00 0.00 0.00 0.86
4178 8498 7.201794 CGGCTCTTCCCTTATATCGACATATAA 60.202 40.741 0.00 0.00 35.78 0.98
4179 8499 8.643324 GGCTCTTCCCTTATATCGACATATAAT 58.357 37.037 0.00 0.00 37.00 1.28
4180 8500 9.469807 GCTCTTCCCTTATATCGACATATAATG 57.530 37.037 0.00 0.00 37.00 1.90
4181 8501 9.973450 CTCTTCCCTTATATCGACATATAATGG 57.027 37.037 11.19 11.19 40.89 3.16
4182 8502 8.924303 TCTTCCCTTATATCGACATATAATGGG 58.076 37.037 17.14 17.14 40.42 4.00
4183 8503 7.062749 TCCCTTATATCGACATATAATGGGC 57.937 40.000 17.77 0.00 40.42 5.36
4184 8504 6.844388 TCCCTTATATCGACATATAATGGGCT 59.156 38.462 17.77 0.00 40.42 5.19
4185 8505 7.347222 TCCCTTATATCGACATATAATGGGCTT 59.653 37.037 17.77 0.00 40.42 4.35
4186 8506 7.993183 CCCTTATATCGACATATAATGGGCTTT 59.007 37.037 14.08 0.00 38.44 3.51
4187 8507 9.396022 CCTTATATCGACATATAATGGGCTTTT 57.604 33.333 0.00 0.00 37.00 2.27
4189 8509 9.952030 TTATATCGACATATAATGGGCTTTTGA 57.048 29.630 0.00 0.00 33.98 2.69
4190 8510 8.862325 ATATCGACATATAATGGGCTTTTGAA 57.138 30.769 0.00 0.00 33.60 2.69
4191 8511 7.765695 ATCGACATATAATGGGCTTTTGAAT 57.234 32.000 0.00 0.00 33.60 2.57
4192 8512 7.581213 TCGACATATAATGGGCTTTTGAATT 57.419 32.000 0.00 0.00 33.60 2.17
4193 8513 8.684386 TCGACATATAATGGGCTTTTGAATTA 57.316 30.769 0.00 0.00 33.60 1.40
4194 8514 8.783093 TCGACATATAATGGGCTTTTGAATTAG 58.217 33.333 0.00 0.00 33.60 1.73
4195 8515 8.783093 CGACATATAATGGGCTTTTGAATTAGA 58.217 33.333 0.00 0.00 33.60 2.10
4197 8517 9.866655 ACATATAATGGGCTTTTGAATTAGAGA 57.133 29.630 0.00 0.00 33.60 3.10
4199 8519 5.921962 AATGGGCTTTTGAATTAGAGACC 57.078 39.130 0.00 0.00 37.83 3.85
4200 8520 3.697166 TGGGCTTTTGAATTAGAGACCC 58.303 45.455 0.00 0.00 36.42 4.46
4201 8521 3.075283 TGGGCTTTTGAATTAGAGACCCA 59.925 43.478 0.00 0.00 42.44 4.51
4202 8522 4.264352 TGGGCTTTTGAATTAGAGACCCAT 60.264 41.667 0.00 0.00 39.86 4.00
4203 8523 4.711846 GGGCTTTTGAATTAGAGACCCATT 59.288 41.667 0.00 0.00 34.82 3.16
4204 8524 5.891551 GGGCTTTTGAATTAGAGACCCATTA 59.108 40.000 0.00 0.00 34.82 1.90
4205 8525 6.039829 GGGCTTTTGAATTAGAGACCCATTAG 59.960 42.308 0.00 0.00 34.82 1.73
4206 8526 6.039829 GGCTTTTGAATTAGAGACCCATTAGG 59.960 42.308 0.00 0.00 43.78 2.69
4207 8527 6.828785 GCTTTTGAATTAGAGACCCATTAGGA 59.171 38.462 0.00 0.00 39.89 2.94
4208 8528 7.503902 GCTTTTGAATTAGAGACCCATTAGGAT 59.496 37.037 0.00 0.00 39.89 3.24
4209 8529 8.752005 TTTTGAATTAGAGACCCATTAGGATG 57.248 34.615 0.00 0.00 39.89 3.51
4210 8530 7.451731 TTGAATTAGAGACCCATTAGGATGT 57.548 36.000 0.00 0.00 39.89 3.06
4211 8531 8.561536 TTGAATTAGAGACCCATTAGGATGTA 57.438 34.615 0.00 0.00 39.89 2.29
4212 8532 8.195165 TGAATTAGAGACCCATTAGGATGTAG 57.805 38.462 0.00 0.00 39.89 2.74
4213 8533 7.789831 TGAATTAGAGACCCATTAGGATGTAGT 59.210 37.037 0.00 0.00 39.89 2.73
4214 8534 6.978674 TTAGAGACCCATTAGGATGTAGTG 57.021 41.667 0.00 0.00 39.89 2.74
4215 8535 4.884961 AGAGACCCATTAGGATGTAGTGT 58.115 43.478 0.00 0.00 39.89 3.55
4216 8536 4.896482 AGAGACCCATTAGGATGTAGTGTC 59.104 45.833 0.00 0.00 39.89 3.67
4217 8537 4.884961 AGACCCATTAGGATGTAGTGTCT 58.115 43.478 0.00 0.00 39.89 3.41
4218 8538 6.027025 AGACCCATTAGGATGTAGTGTCTA 57.973 41.667 0.00 0.00 39.89 2.59
4219 8539 6.071984 AGACCCATTAGGATGTAGTGTCTAG 58.928 44.000 0.00 0.00 39.89 2.43
4220 8540 5.778542 ACCCATTAGGATGTAGTGTCTAGT 58.221 41.667 0.00 0.00 39.89 2.57
4221 8541 6.203072 ACCCATTAGGATGTAGTGTCTAGTT 58.797 40.000 0.00 0.00 39.89 2.24
4222 8542 6.324254 ACCCATTAGGATGTAGTGTCTAGTTC 59.676 42.308 0.00 0.00 39.89 3.01
4223 8543 6.323996 CCCATTAGGATGTAGTGTCTAGTTCA 59.676 42.308 0.00 0.00 38.24 3.18
4224 8544 7.203910 CCATTAGGATGTAGTGTCTAGTTCAC 58.796 42.308 10.99 10.99 36.89 3.18
4225 8545 7.147897 CCATTAGGATGTAGTGTCTAGTTCACA 60.148 40.741 17.69 1.95 36.24 3.58
4226 8546 7.770366 TTAGGATGTAGTGTCTAGTTCACAA 57.230 36.000 17.69 7.80 38.16 3.33
4227 8547 6.859112 AGGATGTAGTGTCTAGTTCACAAT 57.141 37.500 17.69 6.07 38.16 2.71
4228 8548 6.634805 AGGATGTAGTGTCTAGTTCACAATG 58.365 40.000 17.69 0.00 38.16 2.82
4229 8549 5.812642 GGATGTAGTGTCTAGTTCACAATGG 59.187 44.000 17.69 0.00 38.16 3.16
4230 8550 4.566004 TGTAGTGTCTAGTTCACAATGGC 58.434 43.478 17.69 3.27 38.16 4.40
4231 8551 2.688507 AGTGTCTAGTTCACAATGGCG 58.311 47.619 17.69 0.00 38.16 5.69
4232 8552 1.128692 GTGTCTAGTTCACAATGGCGC 59.871 52.381 0.00 0.00 36.05 6.53
4233 8553 1.270571 TGTCTAGTTCACAATGGCGCA 60.271 47.619 10.83 0.00 0.00 6.09
4234 8554 2.009774 GTCTAGTTCACAATGGCGCAT 58.990 47.619 10.83 0.00 0.00 4.73
4235 8555 3.194861 GTCTAGTTCACAATGGCGCATA 58.805 45.455 10.83 0.00 0.00 3.14
4236 8556 3.809832 GTCTAGTTCACAATGGCGCATAT 59.190 43.478 10.83 0.00 0.00 1.78
4237 8557 4.988540 GTCTAGTTCACAATGGCGCATATA 59.011 41.667 10.83 0.00 0.00 0.86
4238 8558 5.639506 GTCTAGTTCACAATGGCGCATATAT 59.360 40.000 10.83 0.00 0.00 0.86
4239 8559 6.811665 GTCTAGTTCACAATGGCGCATATATA 59.188 38.462 10.83 0.00 0.00 0.86
4240 8560 5.862924 AGTTCACAATGGCGCATATATAC 57.137 39.130 10.83 0.00 0.00 1.47
4241 8561 5.304778 AGTTCACAATGGCGCATATATACA 58.695 37.500 10.83 0.00 0.00 2.29
4242 8562 5.762711 AGTTCACAATGGCGCATATATACAA 59.237 36.000 10.83 0.00 0.00 2.41
4243 8563 5.605564 TCACAATGGCGCATATATACAAC 57.394 39.130 10.83 0.00 0.00 3.32
4244 8564 5.304778 TCACAATGGCGCATATATACAACT 58.695 37.500 10.83 0.00 0.00 3.16
4245 8565 5.408299 TCACAATGGCGCATATATACAACTC 59.592 40.000 10.83 0.00 0.00 3.01
4246 8566 5.179182 CACAATGGCGCATATATACAACTCA 59.821 40.000 10.83 0.00 0.00 3.41
4247 8567 5.939883 ACAATGGCGCATATATACAACTCAT 59.060 36.000 10.83 0.00 0.00 2.90
4248 8568 6.430925 ACAATGGCGCATATATACAACTCATT 59.569 34.615 10.83 1.51 0.00 2.57
4249 8569 7.040478 ACAATGGCGCATATATACAACTCATTT 60.040 33.333 10.83 0.00 0.00 2.32
4250 8570 6.875948 TGGCGCATATATACAACTCATTTT 57.124 33.333 10.83 0.00 0.00 1.82
4251 8571 6.667370 TGGCGCATATATACAACTCATTTTG 58.333 36.000 10.83 0.00 0.00 2.44
4252 8572 5.569059 GGCGCATATATACAACTCATTTTGC 59.431 40.000 10.83 0.00 0.00 3.68
4253 8573 5.569059 GCGCATATATACAACTCATTTTGCC 59.431 40.000 0.30 0.00 0.00 4.52
4254 8574 6.568462 GCGCATATATACAACTCATTTTGCCT 60.568 38.462 0.30 0.00 0.00 4.75
4255 8575 7.017645 CGCATATATACAACTCATTTTGCCTC 58.982 38.462 0.00 0.00 0.00 4.70
4256 8576 7.307930 CGCATATATACAACTCATTTTGCCTCA 60.308 37.037 0.00 0.00 0.00 3.86
4257 8577 7.805071 GCATATATACAACTCATTTTGCCTCAC 59.195 37.037 0.00 0.00 0.00 3.51
4258 8578 8.839343 CATATATACAACTCATTTTGCCTCACA 58.161 33.333 0.00 0.00 0.00 3.58
4259 8579 7.701539 ATATACAACTCATTTTGCCTCACAA 57.298 32.000 0.00 0.00 36.13 3.33
4260 8580 4.045636 ACAACTCATTTTGCCTCACAAC 57.954 40.909 0.00 0.00 38.23 3.32
4261 8581 3.446873 ACAACTCATTTTGCCTCACAACA 59.553 39.130 0.00 0.00 38.23 3.33
4262 8582 4.081752 ACAACTCATTTTGCCTCACAACAA 60.082 37.500 0.00 0.00 38.23 2.83
4263 8583 4.942761 ACTCATTTTGCCTCACAACAAT 57.057 36.364 0.00 0.00 38.23 2.71
4264 8584 5.280654 ACTCATTTTGCCTCACAACAATT 57.719 34.783 0.00 0.00 38.23 2.32
4265 8585 5.051816 ACTCATTTTGCCTCACAACAATTG 58.948 37.500 3.24 3.24 38.23 2.32
4266 8586 4.378774 TCATTTTGCCTCACAACAATTGG 58.621 39.130 10.83 0.00 38.23 3.16
4267 8587 2.237393 TTTGCCTCACAACAATTGGC 57.763 45.000 10.83 1.87 43.49 4.52
4268 8588 0.392336 TTGCCTCACAACAATTGGCC 59.608 50.000 10.83 0.00 42.62 5.36
4269 8589 0.758310 TGCCTCACAACAATTGGCCA 60.758 50.000 0.00 0.00 42.62 5.36
4270 8590 0.392336 GCCTCACAACAATTGGCCAA 59.608 50.000 23.00 23.00 37.81 4.52
4271 8591 1.606224 GCCTCACAACAATTGGCCAAG 60.606 52.381 24.94 13.80 37.81 3.61
4272 8592 1.606224 CCTCACAACAATTGGCCAAGC 60.606 52.381 24.94 0.00 34.12 4.01
4273 8593 1.342174 CTCACAACAATTGGCCAAGCT 59.658 47.619 24.94 10.80 34.12 3.74
4274 8594 1.340889 TCACAACAATTGGCCAAGCTC 59.659 47.619 24.94 0.00 34.12 4.09
4275 8595 0.314935 ACAACAATTGGCCAAGCTCG 59.685 50.000 24.94 13.77 34.12 5.03
4276 8596 0.314935 CAACAATTGGCCAAGCTCGT 59.685 50.000 24.94 14.42 0.00 4.18
4277 8597 0.314935 AACAATTGGCCAAGCTCGTG 59.685 50.000 24.94 17.19 0.00 4.35
4278 8598 1.444895 CAATTGGCCAAGCTCGTGC 60.445 57.895 24.94 0.07 40.05 5.34
4279 8599 2.981560 AATTGGCCAAGCTCGTGCG 61.982 57.895 24.94 0.00 45.42 5.34
4280 8600 4.927782 TTGGCCAAGCTCGTGCGT 62.928 61.111 16.05 0.00 45.42 5.24
4281 8601 2.796483 ATTGGCCAAGCTCGTGCGTA 62.796 55.000 24.94 0.00 45.42 4.42
4282 8602 3.188786 GGCCAAGCTCGTGCGTAG 61.189 66.667 0.00 0.00 45.42 3.51
4283 8603 3.188786 GCCAAGCTCGTGCGTAGG 61.189 66.667 3.48 8.44 45.42 3.18
4284 8604 3.188786 CCAAGCTCGTGCGTAGGC 61.189 66.667 3.48 0.00 45.42 3.93
4294 8614 4.901627 GCGTAGGCAAATGCGATC 57.098 55.556 1.75 0.00 43.26 3.69
4295 8615 1.279840 GCGTAGGCAAATGCGATCC 59.720 57.895 1.75 0.00 43.26 3.36
4296 8616 1.160329 GCGTAGGCAAATGCGATCCT 61.160 55.000 1.75 0.00 43.26 3.24
4297 8617 0.861837 CGTAGGCAAATGCGATCCTC 59.138 55.000 0.00 0.00 43.26 3.71
4298 8618 1.230324 GTAGGCAAATGCGATCCTCC 58.770 55.000 0.00 0.00 43.26 4.30
4299 8619 1.131638 TAGGCAAATGCGATCCTCCT 58.868 50.000 0.00 0.00 43.26 3.69
4300 8620 1.131638 AGGCAAATGCGATCCTCCTA 58.868 50.000 0.00 0.00 43.26 2.94
4301 8621 1.701847 AGGCAAATGCGATCCTCCTAT 59.298 47.619 0.00 0.00 43.26 2.57
4302 8622 1.808945 GGCAAATGCGATCCTCCTATG 59.191 52.381 0.00 0.00 43.26 2.23
4303 8623 1.808945 GCAAATGCGATCCTCCTATGG 59.191 52.381 0.00 0.00 0.00 2.74
4304 8624 2.550855 GCAAATGCGATCCTCCTATGGA 60.551 50.000 0.00 0.00 40.82 3.41
4305 8625 6.919820 GGCAAATGCGATCCTCCTATGGAT 62.920 50.000 0.00 0.00 42.61 3.41
4306 8626 4.623886 GCAAATGCGATCCTCCTATGGATA 60.624 45.833 0.00 0.00 46.00 2.59
4307 8627 5.114780 CAAATGCGATCCTCCTATGGATAG 58.885 45.833 0.00 0.00 46.00 2.08
4311 8631 2.616376 CGATCCTCCTATGGATAGCTCG 59.384 54.545 0.00 0.00 46.00 5.03
4312 8632 3.682999 CGATCCTCCTATGGATAGCTCGA 60.683 52.174 0.00 0.00 46.00 4.04
4313 8633 3.074675 TCCTCCTATGGATAGCTCGAC 57.925 52.381 0.00 0.00 0.00 4.20
4314 8634 2.645297 TCCTCCTATGGATAGCTCGACT 59.355 50.000 0.00 0.00 0.00 4.18
4315 8635 3.013921 CCTCCTATGGATAGCTCGACTC 58.986 54.545 0.00 0.00 0.00 3.36
4316 8636 3.308117 CCTCCTATGGATAGCTCGACTCT 60.308 52.174 0.00 0.00 0.00 3.24
4317 8637 4.331968 CTCCTATGGATAGCTCGACTCTT 58.668 47.826 0.00 0.00 0.00 2.85
4318 8638 4.730966 TCCTATGGATAGCTCGACTCTTT 58.269 43.478 0.00 0.00 0.00 2.52
4319 8639 4.762765 TCCTATGGATAGCTCGACTCTTTC 59.237 45.833 0.00 0.00 0.00 2.62
4320 8640 4.764823 CCTATGGATAGCTCGACTCTTTCT 59.235 45.833 0.00 0.00 0.00 2.52
4321 8641 4.846779 ATGGATAGCTCGACTCTTTCTC 57.153 45.455 0.00 0.00 0.00 2.87
4322 8642 2.614520 TGGATAGCTCGACTCTTTCTCG 59.385 50.000 0.00 0.00 0.00 4.04
4323 8643 2.031508 GGATAGCTCGACTCTTTCTCGG 60.032 54.545 0.00 0.00 0.00 4.63
4324 8644 2.110901 TAGCTCGACTCTTTCTCGGT 57.889 50.000 0.00 0.00 0.00 4.69
4325 8645 0.806241 AGCTCGACTCTTTCTCGGTC 59.194 55.000 0.00 0.00 0.00 4.79
4327 8647 4.059136 CGACTCTTTCTCGGTCGC 57.941 61.111 0.00 0.00 44.32 5.19
4328 8648 1.863880 CGACTCTTTCTCGGTCGCG 60.864 63.158 0.00 0.00 44.32 5.87
4329 8649 1.209640 GACTCTTTCTCGGTCGCGT 59.790 57.895 5.77 0.00 0.00 6.01
4330 8650 1.066114 GACTCTTTCTCGGTCGCGTG 61.066 60.000 5.77 0.00 0.00 5.34
4331 8651 2.430244 TCTTTCTCGGTCGCGTGC 60.430 61.111 5.77 0.00 0.00 5.34
4332 8652 2.733218 CTTTCTCGGTCGCGTGCA 60.733 61.111 5.77 0.00 0.00 4.57
4333 8653 2.048597 TTTCTCGGTCGCGTGCAT 60.049 55.556 5.77 0.00 0.00 3.96
4334 8654 2.014093 CTTTCTCGGTCGCGTGCATC 62.014 60.000 5.77 0.00 0.00 3.91
4335 8655 4.829518 TCTCGGTCGCGTGCATCG 62.830 66.667 5.77 0.00 43.12 3.84
4336 8656 4.829518 CTCGGTCGCGTGCATCGA 62.830 66.667 5.77 3.32 42.86 3.59
4337 8657 4.407694 TCGGTCGCGTGCATCGAA 62.408 61.111 14.19 0.00 42.86 3.71
4338 8658 3.474904 CGGTCGCGTGCATCGAAA 61.475 61.111 14.19 0.00 42.86 3.46
4339 8659 2.095843 GGTCGCGTGCATCGAAAC 59.904 61.111 14.19 8.09 42.86 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.488705 CCTTCCCTGCTGGTGTGGTA 61.489 60.000 9.00 0.00 34.77 3.25
296 4231 1.642762 AGATGCCCCTTGGATGTCTTT 59.357 47.619 0.00 0.00 0.00 2.52
469 4405 5.317733 AGCTAGCGATCCATATGTACTTC 57.682 43.478 9.55 0.00 0.00 3.01
498 4596 1.667830 CACCATGACTCGCACCGTT 60.668 57.895 0.00 0.00 0.00 4.44
501 4599 0.739813 GTACCACCATGACTCGCACC 60.740 60.000 0.00 0.00 0.00 5.01
502 4600 0.037697 TGTACCACCATGACTCGCAC 60.038 55.000 0.00 0.00 0.00 5.34
503 4601 0.901827 ATGTACCACCATGACTCGCA 59.098 50.000 0.00 0.00 0.00 5.10
504 4602 2.159156 TGTATGTACCACCATGACTCGC 60.159 50.000 0.00 0.00 0.00 5.03
505 4603 3.793797 TGTATGTACCACCATGACTCG 57.206 47.619 0.00 0.00 0.00 4.18
506 4604 4.299155 CGATGTATGTACCACCATGACTC 58.701 47.826 0.00 0.00 0.00 3.36
507 4605 3.492656 GCGATGTATGTACCACCATGACT 60.493 47.826 0.00 0.00 0.00 3.41
508 4606 2.800544 GCGATGTATGTACCACCATGAC 59.199 50.000 0.00 0.00 0.00 3.06
509 4607 2.698274 AGCGATGTATGTACCACCATGA 59.302 45.455 0.00 0.00 0.00 3.07
510 4608 3.111853 AGCGATGTATGTACCACCATG 57.888 47.619 0.00 0.00 0.00 3.66
511 4609 3.838244 AAGCGATGTATGTACCACCAT 57.162 42.857 0.00 0.00 0.00 3.55
512 4610 4.739587 TTAAGCGATGTATGTACCACCA 57.260 40.909 0.00 0.00 0.00 4.17
513 4611 5.294356 TGATTAAGCGATGTATGTACCACC 58.706 41.667 0.00 0.00 0.00 4.61
514 4612 5.405571 CCTGATTAAGCGATGTATGTACCAC 59.594 44.000 0.00 0.00 0.00 4.16
515 4613 5.303333 TCCTGATTAAGCGATGTATGTACCA 59.697 40.000 0.00 0.00 0.00 3.25
537 4650 7.213678 TCTTTTCTTGAGAAAGAGAGACTTCC 58.786 38.462 6.32 0.00 43.90 3.46
549 4664 3.074412 GTGCCCGATCTTTTCTTGAGAA 58.926 45.455 0.00 0.00 0.00 2.87
570 4695 2.186350 TTCCAACGCGCTCATGCTTG 62.186 55.000 5.73 0.37 36.97 4.01
572 4697 1.709147 GATTCCAACGCGCTCATGCT 61.709 55.000 5.73 0.00 36.97 3.79
580 4705 2.004583 TCTACCTTGATTCCAACGCG 57.995 50.000 3.53 3.53 0.00 6.01
595 4720 3.445857 CGAGGAAAACGGGAGATTCTAC 58.554 50.000 0.00 0.00 32.57 2.59
702 4827 2.817258 AGCTGTATTTTGGCGCTAAACA 59.183 40.909 19.20 13.38 0.00 2.83
939 5067 3.639561 GGAAGATCAGGAACTAGGAGTCC 59.360 52.174 0.00 0.00 36.02 3.85
1134 5263 1.199327 GTGAAGGACTGATCGTCGTCA 59.801 52.381 11.39 12.55 43.79 4.35
1219 5349 4.035909 CGGATCATCATCAAAACATGCAGA 59.964 41.667 0.00 0.00 0.00 4.26
1746 5878 7.121611 ACAATCTACATGATCAAGCACATTTCA 59.878 33.333 0.00 0.00 33.57 2.69
1780 5912 9.793252 TTCTTGATTCAGAAAGAAAGACAAAAG 57.207 29.630 5.46 0.00 38.98 2.27
1848 5980 0.528684 GAGAGACCAGGTACGCATGC 60.529 60.000 7.91 7.91 0.00 4.06
1901 6033 2.774439 ACCAACAAATTCGTCAGTGC 57.226 45.000 0.00 0.00 0.00 4.40
1902 6034 4.920376 AGAAACCAACAAATTCGTCAGTG 58.080 39.130 0.00 0.00 0.00 3.66
1903 6035 5.339990 CAAGAAACCAACAAATTCGTCAGT 58.660 37.500 0.00 0.00 0.00 3.41
2100 6232 1.444724 CGCACCCGACGACATGTTA 60.445 57.895 0.00 0.00 36.29 2.41
2141 6273 3.978571 GACGGCAAGGGGGAGAAGC 62.979 68.421 0.00 0.00 0.00 3.86
2211 6343 4.434354 AGGAGGAGCTCGGCGTCT 62.434 66.667 6.85 5.36 0.00 4.18
2262 6394 4.988716 TGGGTCTCGTCCGTGCCT 62.989 66.667 0.00 0.00 0.00 4.75
2297 6429 2.599597 GGAGCACCATCTGGCCAT 59.400 61.111 5.51 0.00 39.32 4.40
2427 6559 2.610859 ATGAACCCTCCGGCCAGT 60.611 61.111 2.24 0.00 0.00 4.00
2528 6678 3.901797 AAGAAACCTCCCTGCGCCG 62.902 63.158 4.18 0.00 0.00 6.46
2529 6679 2.034221 AAGAAACCTCCCTGCGCC 59.966 61.111 4.18 0.00 0.00 6.53
2530 6680 2.391389 CGAAGAAACCTCCCTGCGC 61.391 63.158 0.00 0.00 0.00 6.09
2531 6681 1.741770 CCGAAGAAACCTCCCTGCG 60.742 63.158 0.00 0.00 0.00 5.18
2532 6682 2.041115 GCCGAAGAAACCTCCCTGC 61.041 63.158 0.00 0.00 0.00 4.85
2533 6683 1.741770 CGCCGAAGAAACCTCCCTG 60.742 63.158 0.00 0.00 0.00 4.45
2534 6684 2.663196 CGCCGAAGAAACCTCCCT 59.337 61.111 0.00 0.00 0.00 4.20
2685 6838 1.559682 TGGGTTTCTACCTGCATCTCC 59.440 52.381 0.00 0.00 44.38 3.71
2705 6858 2.348666 CGATTCTTGGCGAATTCGTTCT 59.651 45.455 27.24 7.21 42.31 3.01
3184 7342 1.450848 TCGTCGTATCAGAGCCGGT 60.451 57.895 1.90 0.00 0.00 5.28
3196 7354 2.202311 CATGCTCGTCGTCGTCGT 60.202 61.111 11.41 0.00 38.33 4.34
3216 7374 4.454504 GGCTGAAATGGAAAACTCGTTAGA 59.545 41.667 0.00 0.00 0.00 2.10
3381 7543 3.478509 TGCACGTGTAAAATAGGTTGGT 58.521 40.909 18.38 0.00 0.00 3.67
3570 7733 3.993081 CACAACTCCTCTGCAAACTCTAG 59.007 47.826 0.00 0.00 0.00 2.43
3725 7902 8.410030 TGTATTGCAGCAACAATTCATTATTC 57.590 30.769 10.85 0.00 40.64 1.75
3758 7935 9.502091 TGTCTGCACATTTTAGTACTAAATCTT 57.498 29.630 24.89 12.67 35.27 2.40
3778 7955 6.035112 CCGACTCTACTTTTAGAATTGTCTGC 59.965 42.308 0.00 0.00 33.73 4.26
3788 7965 4.142730 ACGCTACACCGACTCTACTTTTAG 60.143 45.833 0.00 0.00 0.00 1.85
3965 8285 1.136147 CTTGATGAGTTGCGGCTGC 59.864 57.895 11.65 11.65 43.20 5.25
3988 8308 2.846827 ACCTCCCTCTTTGAATAGTGGG 59.153 50.000 0.00 0.00 46.02 4.61
3993 8313 5.843019 AAAGACACCTCCCTCTTTGAATA 57.157 39.130 0.00 0.00 35.76 1.75
4015 8335 1.403814 CTCAAGCCTCGGGAGACATA 58.596 55.000 0.00 0.00 33.60 2.29
4028 8348 0.103937 CGATGGGAGAGACCTCAAGC 59.896 60.000 0.00 0.00 41.20 4.01
4031 8351 1.039785 CAGCGATGGGAGAGACCTCA 61.040 60.000 0.00 0.00 41.20 3.86
4049 8369 1.202568 GCGATCTGATGGGTCATGTCA 60.203 52.381 0.00 0.00 32.98 3.58
4090 8410 2.672651 CACTTCACGCCATGCCCA 60.673 61.111 0.00 0.00 0.00 5.36
4091 8411 2.359850 TCACTTCACGCCATGCCC 60.360 61.111 0.00 0.00 0.00 5.36
4092 8412 1.915614 CTGTCACTTCACGCCATGCC 61.916 60.000 0.00 0.00 0.00 4.40
4093 8413 1.230635 ACTGTCACTTCACGCCATGC 61.231 55.000 0.00 0.00 0.00 4.06
4094 8414 1.995484 CTACTGTCACTTCACGCCATG 59.005 52.381 0.00 0.00 0.00 3.66
4095 8415 1.618837 ACTACTGTCACTTCACGCCAT 59.381 47.619 0.00 0.00 0.00 4.40
4096 8416 1.037493 ACTACTGTCACTTCACGCCA 58.963 50.000 0.00 0.00 0.00 5.69
4097 8417 2.150397 AACTACTGTCACTTCACGCC 57.850 50.000 0.00 0.00 0.00 5.68
4098 8418 4.033587 TGAAAAACTACTGTCACTTCACGC 59.966 41.667 0.00 0.00 0.00 5.34
4099 8419 5.518847 TCTGAAAAACTACTGTCACTTCACG 59.481 40.000 0.00 0.00 0.00 4.35
4100 8420 6.903883 TCTGAAAAACTACTGTCACTTCAC 57.096 37.500 0.00 0.00 0.00 3.18
4101 8421 8.506168 AAATCTGAAAAACTACTGTCACTTCA 57.494 30.769 0.00 0.00 0.00 3.02
4102 8422 9.439537 GAAAATCTGAAAAACTACTGTCACTTC 57.560 33.333 0.00 0.00 0.00 3.01
4103 8423 8.406297 GGAAAATCTGAAAAACTACTGTCACTT 58.594 33.333 0.00 0.00 0.00 3.16
4104 8424 7.556275 TGGAAAATCTGAAAAACTACTGTCACT 59.444 33.333 0.00 0.00 0.00 3.41
4105 8425 7.703328 TGGAAAATCTGAAAAACTACTGTCAC 58.297 34.615 0.00 0.00 0.00 3.67
4106 8426 7.873719 TGGAAAATCTGAAAAACTACTGTCA 57.126 32.000 0.00 0.00 0.00 3.58
4107 8427 8.406297 AGTTGGAAAATCTGAAAAACTACTGTC 58.594 33.333 0.00 0.00 0.00 3.51
4108 8428 8.190784 CAGTTGGAAAATCTGAAAAACTACTGT 58.809 33.333 0.00 0.00 0.00 3.55
4109 8429 7.649306 CCAGTTGGAAAATCTGAAAAACTACTG 59.351 37.037 0.00 0.00 37.39 2.74
4110 8430 7.342026 ACCAGTTGGAAAATCTGAAAAACTACT 59.658 33.333 4.92 0.00 38.94 2.57
4111 8431 7.489160 ACCAGTTGGAAAATCTGAAAAACTAC 58.511 34.615 4.92 0.00 38.94 2.73
4112 8432 7.654022 ACCAGTTGGAAAATCTGAAAAACTA 57.346 32.000 4.92 0.00 38.94 2.24
4113 8433 6.544928 ACCAGTTGGAAAATCTGAAAAACT 57.455 33.333 4.92 0.00 38.94 2.66
4114 8434 8.600625 GTTAACCAGTTGGAAAATCTGAAAAAC 58.399 33.333 4.92 0.00 38.94 2.43
4115 8435 7.766738 GGTTAACCAGTTGGAAAATCTGAAAAA 59.233 33.333 20.12 0.00 38.94 1.94
4116 8436 7.125053 AGGTTAACCAGTTGGAAAATCTGAAAA 59.875 33.333 26.26 0.00 38.89 2.29
4117 8437 6.609616 AGGTTAACCAGTTGGAAAATCTGAAA 59.390 34.615 26.26 0.00 38.89 2.69
4118 8438 6.133356 AGGTTAACCAGTTGGAAAATCTGAA 58.867 36.000 26.26 0.00 38.89 3.02
4119 8439 5.701224 AGGTTAACCAGTTGGAAAATCTGA 58.299 37.500 26.26 0.00 38.89 3.27
4120 8440 6.405278 AAGGTTAACCAGTTGGAAAATCTG 57.595 37.500 26.26 0.00 38.89 2.90
4121 8441 8.541899 TTTAAGGTTAACCAGTTGGAAAATCT 57.458 30.769 26.26 0.00 38.89 2.40
4122 8442 9.037737 GTTTTAAGGTTAACCAGTTGGAAAATC 57.962 33.333 26.26 10.15 38.89 2.17
4123 8443 7.707464 CGTTTTAAGGTTAACCAGTTGGAAAAT 59.293 33.333 26.26 0.00 38.89 1.82
4124 8444 7.034397 CGTTTTAAGGTTAACCAGTTGGAAAA 58.966 34.615 26.26 17.09 38.89 2.29
4125 8445 6.152492 ACGTTTTAAGGTTAACCAGTTGGAAA 59.848 34.615 26.26 14.01 38.89 3.13
4126 8446 5.651576 ACGTTTTAAGGTTAACCAGTTGGAA 59.348 36.000 26.26 10.12 38.89 3.53
4127 8447 5.192176 ACGTTTTAAGGTTAACCAGTTGGA 58.808 37.500 26.26 5.09 38.89 3.53
4128 8448 5.503662 ACGTTTTAAGGTTAACCAGTTGG 57.496 39.130 26.26 11.15 38.89 3.77
4129 8449 5.513376 GGACGTTTTAAGGTTAACCAGTTG 58.487 41.667 26.26 11.19 38.89 3.16
4130 8450 4.273235 CGGACGTTTTAAGGTTAACCAGTT 59.727 41.667 26.26 14.96 38.89 3.16
4131 8451 3.809279 CGGACGTTTTAAGGTTAACCAGT 59.191 43.478 26.26 15.69 38.89 4.00
4132 8452 3.187022 CCGGACGTTTTAAGGTTAACCAG 59.813 47.826 26.26 10.33 38.89 4.00
4133 8453 3.137533 CCGGACGTTTTAAGGTTAACCA 58.862 45.455 26.26 3.80 38.89 3.67
4134 8454 2.095768 GCCGGACGTTTTAAGGTTAACC 60.096 50.000 17.41 17.41 0.00 2.85
4135 8455 2.807967 AGCCGGACGTTTTAAGGTTAAC 59.192 45.455 5.05 0.00 0.00 2.01
4136 8456 3.066380 GAGCCGGACGTTTTAAGGTTAA 58.934 45.455 5.05 0.00 0.00 2.01
4137 8457 2.299867 AGAGCCGGACGTTTTAAGGTTA 59.700 45.455 5.05 0.00 0.00 2.85
4138 8458 1.071228 AGAGCCGGACGTTTTAAGGTT 59.929 47.619 5.05 0.00 0.00 3.50
4139 8459 0.683412 AGAGCCGGACGTTTTAAGGT 59.317 50.000 5.05 0.00 0.00 3.50
4140 8460 1.730612 GAAGAGCCGGACGTTTTAAGG 59.269 52.381 5.05 0.00 0.00 2.69
4141 8461 1.730612 GGAAGAGCCGGACGTTTTAAG 59.269 52.381 5.05 0.00 0.00 1.85
4142 8462 1.608801 GGGAAGAGCCGGACGTTTTAA 60.609 52.381 5.05 0.00 37.63 1.52
4143 8463 0.037046 GGGAAGAGCCGGACGTTTTA 60.037 55.000 5.05 0.00 37.63 1.52
4144 8464 1.302271 GGGAAGAGCCGGACGTTTT 60.302 57.895 5.05 0.00 37.63 2.43
4145 8465 1.765597 AAGGGAAGAGCCGGACGTTT 61.766 55.000 5.05 0.00 37.63 3.60
4146 8466 0.901580 TAAGGGAAGAGCCGGACGTT 60.902 55.000 5.05 0.00 37.63 3.99
4147 8467 0.686769 ATAAGGGAAGAGCCGGACGT 60.687 55.000 5.05 0.00 37.63 4.34
4148 8468 1.325355 TATAAGGGAAGAGCCGGACG 58.675 55.000 5.05 0.00 37.63 4.79
4149 8469 2.094649 CGATATAAGGGAAGAGCCGGAC 60.095 54.545 5.05 0.00 37.63 4.79
4150 8470 2.168496 CGATATAAGGGAAGAGCCGGA 58.832 52.381 5.05 0.00 37.63 5.14
4151 8471 2.094649 GTCGATATAAGGGAAGAGCCGG 60.095 54.545 0.00 0.00 37.63 6.13
4152 8472 2.557056 TGTCGATATAAGGGAAGAGCCG 59.443 50.000 0.00 0.00 37.63 5.52
4153 8473 4.810191 ATGTCGATATAAGGGAAGAGCC 57.190 45.455 0.00 0.00 0.00 4.70
4154 8474 9.469807 CATTATATGTCGATATAAGGGAAGAGC 57.530 37.037 5.94 0.00 39.38 4.09
4161 8481 8.964476 AAAGCCCATTATATGTCGATATAAGG 57.036 34.615 5.94 4.97 39.38 2.69
4163 8483 9.952030 TCAAAAGCCCATTATATGTCGATATAA 57.048 29.630 5.94 3.70 40.00 0.98
4164 8484 9.952030 TTCAAAAGCCCATTATATGTCGATATA 57.048 29.630 4.22 4.22 0.00 0.86
4165 8485 8.862325 TTCAAAAGCCCATTATATGTCGATAT 57.138 30.769 0.00 0.00 0.00 1.63
4166 8486 8.862325 ATTCAAAAGCCCATTATATGTCGATA 57.138 30.769 0.00 0.00 0.00 2.92
4167 8487 7.765695 ATTCAAAAGCCCATTATATGTCGAT 57.234 32.000 0.00 0.00 0.00 3.59
4168 8488 7.581213 AATTCAAAAGCCCATTATATGTCGA 57.419 32.000 0.00 0.00 0.00 4.20
4169 8489 8.783093 TCTAATTCAAAAGCCCATTATATGTCG 58.217 33.333 0.00 0.00 0.00 4.35
4171 8491 9.866655 TCTCTAATTCAAAAGCCCATTATATGT 57.133 29.630 0.00 0.00 0.00 2.29
4173 8493 9.301897 GGTCTCTAATTCAAAAGCCCATTATAT 57.698 33.333 0.00 0.00 0.00 0.86
4174 8494 7.724061 GGGTCTCTAATTCAAAAGCCCATTATA 59.276 37.037 0.00 0.00 34.03 0.98
4175 8495 6.551227 GGGTCTCTAATTCAAAAGCCCATTAT 59.449 38.462 0.00 0.00 34.03 1.28
4176 8496 5.891551 GGGTCTCTAATTCAAAAGCCCATTA 59.108 40.000 0.00 0.00 34.03 1.90
4177 8497 4.711846 GGGTCTCTAATTCAAAAGCCCATT 59.288 41.667 0.00 0.00 34.03 3.16
4178 8498 4.264352 TGGGTCTCTAATTCAAAAGCCCAT 60.264 41.667 0.00 0.00 38.57 4.00
4179 8499 3.075283 TGGGTCTCTAATTCAAAAGCCCA 59.925 43.478 0.00 0.00 40.88 5.36
4180 8500 3.697166 TGGGTCTCTAATTCAAAAGCCC 58.303 45.455 0.00 0.00 0.00 5.19
4181 8501 5.921962 AATGGGTCTCTAATTCAAAAGCC 57.078 39.130 0.00 0.00 0.00 4.35
4182 8502 6.828785 TCCTAATGGGTCTCTAATTCAAAAGC 59.171 38.462 0.00 0.00 36.25 3.51
4183 8503 8.844244 CATCCTAATGGGTCTCTAATTCAAAAG 58.156 37.037 0.00 0.00 36.25 2.27
4184 8504 8.336235 ACATCCTAATGGGTCTCTAATTCAAAA 58.664 33.333 0.00 0.00 37.19 2.44
4185 8505 7.872138 ACATCCTAATGGGTCTCTAATTCAAA 58.128 34.615 0.00 0.00 37.19 2.69
4186 8506 7.451731 ACATCCTAATGGGTCTCTAATTCAA 57.548 36.000 0.00 0.00 37.19 2.69
4187 8507 7.789831 ACTACATCCTAATGGGTCTCTAATTCA 59.210 37.037 0.00 0.00 37.19 2.57
4188 8508 8.091449 CACTACATCCTAATGGGTCTCTAATTC 58.909 40.741 0.00 0.00 37.19 2.17
4189 8509 7.569111 ACACTACATCCTAATGGGTCTCTAATT 59.431 37.037 0.00 0.00 37.19 1.40
4190 8510 7.076446 ACACTACATCCTAATGGGTCTCTAAT 58.924 38.462 0.00 0.00 37.19 1.73
4191 8511 6.441222 ACACTACATCCTAATGGGTCTCTAA 58.559 40.000 0.00 0.00 37.19 2.10
4192 8512 6.027025 ACACTACATCCTAATGGGTCTCTA 57.973 41.667 0.00 0.00 37.19 2.43
4193 8513 4.884961 ACACTACATCCTAATGGGTCTCT 58.115 43.478 0.00 0.00 37.19 3.10
4194 8514 4.896482 AGACACTACATCCTAATGGGTCTC 59.104 45.833 0.00 0.00 37.19 3.36
4195 8515 4.884961 AGACACTACATCCTAATGGGTCT 58.115 43.478 0.00 0.00 37.19 3.85
4196 8516 5.834204 ACTAGACACTACATCCTAATGGGTC 59.166 44.000 0.00 0.00 37.19 4.46
4197 8517 5.778542 ACTAGACACTACATCCTAATGGGT 58.221 41.667 0.00 0.00 37.19 4.51
4198 8518 6.323996 TGAACTAGACACTACATCCTAATGGG 59.676 42.308 0.00 0.00 37.19 4.00
4199 8519 7.147897 TGTGAACTAGACACTACATCCTAATGG 60.148 40.741 19.17 0.00 38.81 3.16
4200 8520 7.772166 TGTGAACTAGACACTACATCCTAATG 58.228 38.462 19.17 0.00 38.81 1.90
4201 8521 7.956328 TGTGAACTAGACACTACATCCTAAT 57.044 36.000 19.17 0.00 38.81 1.73
4202 8522 7.770366 TTGTGAACTAGACACTACATCCTAA 57.230 36.000 19.17 6.30 38.81 2.69
4203 8523 7.147897 CCATTGTGAACTAGACACTACATCCTA 60.148 40.741 19.17 0.00 38.81 2.94
4204 8524 6.351371 CCATTGTGAACTAGACACTACATCCT 60.351 42.308 19.17 0.00 38.81 3.24
4205 8525 5.812642 CCATTGTGAACTAGACACTACATCC 59.187 44.000 19.17 0.49 38.81 3.51
4206 8526 5.292101 GCCATTGTGAACTAGACACTACATC 59.708 44.000 19.17 7.93 38.81 3.06
4207 8527 5.178797 GCCATTGTGAACTAGACACTACAT 58.821 41.667 19.17 10.27 38.81 2.29
4208 8528 4.566004 GCCATTGTGAACTAGACACTACA 58.434 43.478 19.17 6.30 38.81 2.74
4209 8529 3.612860 CGCCATTGTGAACTAGACACTAC 59.387 47.826 19.17 4.30 38.81 2.73
4210 8530 3.845178 CGCCATTGTGAACTAGACACTA 58.155 45.455 19.17 14.64 38.81 2.74
4211 8531 2.688507 CGCCATTGTGAACTAGACACT 58.311 47.619 19.17 4.49 38.81 3.55
4212 8532 1.128692 GCGCCATTGTGAACTAGACAC 59.871 52.381 14.40 14.40 38.55 3.67
4213 8533 1.270571 TGCGCCATTGTGAACTAGACA 60.271 47.619 4.18 0.00 0.00 3.41
4214 8534 1.438651 TGCGCCATTGTGAACTAGAC 58.561 50.000 4.18 0.00 0.00 2.59
4215 8535 2.401583 ATGCGCCATTGTGAACTAGA 57.598 45.000 4.18 0.00 0.00 2.43
4216 8536 6.589907 TGTATATATGCGCCATTGTGAACTAG 59.410 38.462 4.18 0.00 0.00 2.57
4217 8537 6.459923 TGTATATATGCGCCATTGTGAACTA 58.540 36.000 4.18 0.00 0.00 2.24
4218 8538 5.304778 TGTATATATGCGCCATTGTGAACT 58.695 37.500 4.18 0.00 0.00 3.01
4219 8539 5.605564 TGTATATATGCGCCATTGTGAAC 57.394 39.130 4.18 0.00 0.00 3.18
4220 8540 5.762711 AGTTGTATATATGCGCCATTGTGAA 59.237 36.000 4.18 0.00 0.00 3.18
4221 8541 5.304778 AGTTGTATATATGCGCCATTGTGA 58.695 37.500 4.18 0.00 0.00 3.58
4222 8542 5.179182 TGAGTTGTATATATGCGCCATTGTG 59.821 40.000 4.18 0.00 0.00 3.33
4223 8543 5.304778 TGAGTTGTATATATGCGCCATTGT 58.695 37.500 4.18 0.00 0.00 2.71
4224 8544 5.861222 TGAGTTGTATATATGCGCCATTG 57.139 39.130 4.18 0.00 0.00 2.82
4225 8545 7.452880 AAATGAGTTGTATATATGCGCCATT 57.547 32.000 4.18 0.00 0.00 3.16
4226 8546 7.307694 CAAAATGAGTTGTATATATGCGCCAT 58.692 34.615 4.18 0.00 0.00 4.40
4227 8547 6.667370 CAAAATGAGTTGTATATATGCGCCA 58.333 36.000 4.18 0.00 0.00 5.69
4228 8548 5.569059 GCAAAATGAGTTGTATATATGCGCC 59.431 40.000 4.18 0.00 0.00 6.53
4229 8549 5.569059 GGCAAAATGAGTTGTATATATGCGC 59.431 40.000 0.00 0.00 0.00 6.09
4230 8550 6.902341 AGGCAAAATGAGTTGTATATATGCG 58.098 36.000 0.00 0.00 0.00 4.73
4231 8551 7.805071 GTGAGGCAAAATGAGTTGTATATATGC 59.195 37.037 0.00 0.00 0.00 3.14
4232 8552 8.839343 TGTGAGGCAAAATGAGTTGTATATATG 58.161 33.333 0.00 0.00 0.00 1.78
4233 8553 8.978874 TGTGAGGCAAAATGAGTTGTATATAT 57.021 30.769 0.00 0.00 0.00 0.86
4234 8554 8.673711 GTTGTGAGGCAAAATGAGTTGTATATA 58.326 33.333 0.00 0.00 39.03 0.86
4235 8555 7.176515 TGTTGTGAGGCAAAATGAGTTGTATAT 59.823 33.333 0.00 0.00 39.03 0.86
4236 8556 6.488344 TGTTGTGAGGCAAAATGAGTTGTATA 59.512 34.615 0.00 0.00 39.03 1.47
4237 8557 5.301551 TGTTGTGAGGCAAAATGAGTTGTAT 59.698 36.000 0.00 0.00 39.03 2.29
4238 8558 4.642437 TGTTGTGAGGCAAAATGAGTTGTA 59.358 37.500 0.00 0.00 39.03 2.41
4239 8559 3.446873 TGTTGTGAGGCAAAATGAGTTGT 59.553 39.130 0.00 0.00 39.03 3.32
4240 8560 4.044336 TGTTGTGAGGCAAAATGAGTTG 57.956 40.909 0.00 0.00 39.03 3.16
4241 8561 4.734398 TTGTTGTGAGGCAAAATGAGTT 57.266 36.364 0.00 0.00 39.03 3.01
4242 8562 4.942761 ATTGTTGTGAGGCAAAATGAGT 57.057 36.364 0.00 0.00 39.03 3.41
4243 8563 4.449743 CCAATTGTTGTGAGGCAAAATGAG 59.550 41.667 4.43 0.00 39.03 2.90
4244 8564 4.378774 CCAATTGTTGTGAGGCAAAATGA 58.621 39.130 4.43 0.00 39.03 2.57
4245 8565 3.058777 GCCAATTGTTGTGAGGCAAAATG 60.059 43.478 4.43 0.00 44.59 2.32
4246 8566 3.140623 GCCAATTGTTGTGAGGCAAAAT 58.859 40.909 4.43 0.00 44.59 1.82
4247 8567 2.559440 GCCAATTGTTGTGAGGCAAAA 58.441 42.857 4.43 0.00 44.59 2.44
4248 8568 1.202627 GGCCAATTGTTGTGAGGCAAA 60.203 47.619 4.43 0.00 46.96 3.68
4249 8569 0.392336 GGCCAATTGTTGTGAGGCAA 59.608 50.000 4.43 0.00 46.96 4.52
4250 8570 0.758310 TGGCCAATTGTTGTGAGGCA 60.758 50.000 0.61 3.56 46.96 4.75
4251 8571 0.392336 TTGGCCAATTGTTGTGAGGC 59.608 50.000 16.05 0.00 44.48 4.70
4252 8572 1.606224 GCTTGGCCAATTGTTGTGAGG 60.606 52.381 20.85 3.99 0.00 3.86
4253 8573 1.342174 AGCTTGGCCAATTGTTGTGAG 59.658 47.619 20.85 4.58 0.00 3.51
4254 8574 1.340889 GAGCTTGGCCAATTGTTGTGA 59.659 47.619 20.85 0.00 0.00 3.58
4255 8575 1.787012 GAGCTTGGCCAATTGTTGTG 58.213 50.000 20.85 6.44 0.00 3.33
4256 8576 0.314935 CGAGCTTGGCCAATTGTTGT 59.685 50.000 20.85 0.00 0.00 3.32
4257 8577 0.314935 ACGAGCTTGGCCAATTGTTG 59.685 50.000 20.85 12.55 0.00 3.33
4258 8578 0.314935 CACGAGCTTGGCCAATTGTT 59.685 50.000 20.85 6.16 0.00 2.83
4259 8579 1.959085 CACGAGCTTGGCCAATTGT 59.041 52.632 20.85 12.54 0.00 2.71
4260 8580 1.444895 GCACGAGCTTGGCCAATTG 60.445 57.895 20.85 11.82 37.91 2.32
4261 8581 2.964978 GCACGAGCTTGGCCAATT 59.035 55.556 20.85 10.74 37.91 2.32
4262 8582 2.796483 TACGCACGAGCTTGGCCAAT 62.796 55.000 20.85 4.57 39.10 3.16
4263 8583 3.523087 TACGCACGAGCTTGGCCAA 62.523 57.895 19.25 19.25 39.10 4.52
4264 8584 3.932580 CTACGCACGAGCTTGGCCA 62.933 63.158 0.00 0.00 39.10 5.36
4265 8585 3.188786 CTACGCACGAGCTTGGCC 61.189 66.667 5.79 0.00 39.10 5.36
4266 8586 3.188786 CCTACGCACGAGCTTGGC 61.189 66.667 5.79 5.18 39.10 4.52
4267 8587 3.188786 GCCTACGCACGAGCTTGG 61.189 66.667 5.79 3.49 39.10 3.61
4268 8588 2.432456 TGCCTACGCACGAGCTTG 60.432 61.111 2.73 0.00 41.12 4.01
4276 8596 1.436195 GGATCGCATTTGCCTACGCA 61.436 55.000 0.00 0.00 45.49 5.24
4277 8597 1.160329 AGGATCGCATTTGCCTACGC 61.160 55.000 0.00 0.00 37.91 4.42
4278 8598 0.861837 GAGGATCGCATTTGCCTACG 59.138 55.000 0.00 0.00 37.91 3.51
4279 8599 1.202698 AGGAGGATCGCATTTGCCTAC 60.203 52.381 0.00 0.00 37.91 3.18
4280 8600 1.131638 AGGAGGATCGCATTTGCCTA 58.868 50.000 0.00 0.00 37.91 3.93
4281 8601 1.131638 TAGGAGGATCGCATTTGCCT 58.868 50.000 0.00 0.00 37.91 4.75
4282 8602 1.808945 CATAGGAGGATCGCATTTGCC 59.191 52.381 0.00 0.00 37.91 4.52
4283 8603 1.808945 CCATAGGAGGATCGCATTTGC 59.191 52.381 0.00 0.00 34.37 3.68
4284 8604 3.407424 TCCATAGGAGGATCGCATTTG 57.593 47.619 0.00 0.00 34.37 2.32
4285 8605 5.350504 CTATCCATAGGAGGATCGCATTT 57.649 43.478 0.00 0.00 45.16 2.32
4289 8609 2.880963 GCTATCCATAGGAGGATCGC 57.119 55.000 0.00 1.31 45.16 4.58
4290 8610 2.616376 CGAGCTATCCATAGGAGGATCG 59.384 54.545 12.36 12.36 45.16 3.69
4291 8611 3.630312 GTCGAGCTATCCATAGGAGGATC 59.370 52.174 0.00 0.00 45.16 3.36
4293 8613 2.645297 AGTCGAGCTATCCATAGGAGGA 59.355 50.000 0.00 0.00 43.01 3.71
4294 8614 3.013921 GAGTCGAGCTATCCATAGGAGG 58.986 54.545 0.00 0.00 34.05 4.30
4295 8615 3.950397 AGAGTCGAGCTATCCATAGGAG 58.050 50.000 0.00 0.00 34.05 3.69
4296 8616 4.374689 AAGAGTCGAGCTATCCATAGGA 57.625 45.455 0.00 0.00 35.55 2.94
4297 8617 4.764823 AGAAAGAGTCGAGCTATCCATAGG 59.235 45.833 0.00 0.00 0.00 2.57
4298 8618 5.390461 CGAGAAAGAGTCGAGCTATCCATAG 60.390 48.000 0.00 0.00 39.92 2.23
4299 8619 4.452795 CGAGAAAGAGTCGAGCTATCCATA 59.547 45.833 0.00 0.00 39.92 2.74
4300 8620 3.252215 CGAGAAAGAGTCGAGCTATCCAT 59.748 47.826 0.00 0.00 39.92 3.41
4301 8621 2.614520 CGAGAAAGAGTCGAGCTATCCA 59.385 50.000 0.00 0.00 39.92 3.41
4302 8622 2.031508 CCGAGAAAGAGTCGAGCTATCC 60.032 54.545 0.00 0.00 39.92 2.59
4303 8623 2.614983 ACCGAGAAAGAGTCGAGCTATC 59.385 50.000 0.00 0.00 39.92 2.08
4304 8624 2.614983 GACCGAGAAAGAGTCGAGCTAT 59.385 50.000 0.00 0.00 39.92 2.97
4305 8625 2.008329 GACCGAGAAAGAGTCGAGCTA 58.992 52.381 0.00 0.00 39.92 3.32
4306 8626 0.806241 GACCGAGAAAGAGTCGAGCT 59.194 55.000 0.00 0.00 39.92 4.09
4307 8627 3.315972 GACCGAGAAAGAGTCGAGC 57.684 57.895 0.00 0.00 39.92 5.03
4311 8631 1.066114 CACGCGACCGAGAAAGAGTC 61.066 60.000 15.93 0.00 38.29 3.36
4312 8632 1.081376 CACGCGACCGAGAAAGAGT 60.081 57.895 15.93 0.00 38.29 3.24
4313 8633 2.437343 GCACGCGACCGAGAAAGAG 61.437 63.158 15.93 0.00 38.29 2.85
4314 8634 2.430244 GCACGCGACCGAGAAAGA 60.430 61.111 15.93 0.00 38.29 2.52
4315 8635 2.014093 GATGCACGCGACCGAGAAAG 62.014 60.000 15.93 0.00 38.29 2.62
4316 8636 2.048597 ATGCACGCGACCGAGAAA 60.049 55.556 15.93 0.00 38.29 2.52
4317 8637 2.506217 GATGCACGCGACCGAGAA 60.506 61.111 15.93 0.00 38.29 2.87
4318 8638 4.829518 CGATGCACGCGACCGAGA 62.830 66.667 15.93 0.00 38.29 4.04
4319 8639 4.829518 TCGATGCACGCGACCGAG 62.830 66.667 15.93 0.00 42.26 4.63
4320 8640 3.900393 TTTCGATGCACGCGACCGA 62.900 57.895 15.93 10.93 42.26 4.69
4321 8641 3.474904 TTTCGATGCACGCGACCG 61.475 61.111 15.93 8.56 42.26 4.79
4322 8642 2.095843 GTTTCGATGCACGCGACC 59.904 61.111 15.93 2.95 42.26 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.