Multiple sequence alignment - TraesCS1D01G145500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G145500 chr1D 100.000 4429 0 0 1 4429 200881220 200876792 0.000000e+00 8179.0
1 TraesCS1D01G145500 chr1D 75.269 372 69 17 1929 2284 473346778 473346414 5.930000e-34 156.0
2 TraesCS1D01G145500 chr1B 95.628 3774 91 18 428 4158 288812115 288808373 0.000000e+00 5987.0
3 TraesCS1D01G145500 chr1B 91.003 289 18 5 4148 4429 288806373 288806086 2.500000e-102 383.0
4 TraesCS1D01G145500 chr1A 96.115 2497 62 15 1749 4238 254385781 254383313 0.000000e+00 4041.0
5 TraesCS1D01G145500 chr1A 93.430 1309 42 11 428 1713 254387062 254385775 0.000000e+00 1901.0
6 TraesCS1D01G145500 chr1A 91.979 187 5 3 4197 4375 254383272 254383088 2.040000e-63 254.0
7 TraesCS1D01G145500 chr1A 97.619 42 1 0 4197 4238 254383313 254383272 6.140000e-09 73.1
8 TraesCS1D01G145500 chr5D 91.845 233 9 5 207 429 558911486 558911718 2.570000e-82 316.0
9 TraesCS1D01G145500 chr5D 86.275 51 5 2 1141 1190 94028566 94028517 2.000000e-03 54.7
10 TraesCS1D01G145500 chr4D 75.068 369 74 15 2099 2461 477582459 477582103 5.930000e-34 156.0
11 TraesCS1D01G145500 chr4B 81.421 183 31 3 2104 2285 603168914 603168734 3.570000e-31 147.0
12 TraesCS1D01G145500 chr5A 88.235 51 4 2 1141 1190 87935120 87935071 4.780000e-05 60.2
13 TraesCS1D01G145500 chr5B 86.275 51 5 2 1141 1190 101325298 101325249 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G145500 chr1D 200876792 200881220 4428 True 8179.000 8179 100.00000 1 4429 1 chr1D.!!$R1 4428
1 TraesCS1D01G145500 chr1B 288806086 288812115 6029 True 3185.000 5987 93.31550 428 4429 2 chr1B.!!$R1 4001
2 TraesCS1D01G145500 chr1A 254383088 254387062 3974 True 1567.275 4041 94.78575 428 4375 4 chr1A.!!$R1 3947

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 191 0.035458 CGCCAAGAGGAGAAGGTGTT 59.965 55.0 0.00 0.00 36.74 3.32 F
214 215 0.038166 GCTGTTGGTCCCTGGATTCA 59.962 55.0 0.00 0.00 0.00 2.57 F
458 459 0.107993 CACCACATGACCTCATCGCT 60.108 55.0 0.00 0.00 33.61 4.93 F
1322 1358 0.111253 ACAGAAGAAGGCCAACCCTG 59.889 55.0 5.01 8.06 45.62 4.45 F
2821 2868 0.035630 GTCAGCTGGCACCATCTTCT 60.036 55.0 14.88 0.00 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 1629 0.098200 CAGCACAAGATGGTCATGCG 59.902 55.000 0.00 0.0 41.23 4.73 R
1726 1765 2.288948 GCAAACCATCTCCATGTTGCAA 60.289 45.455 0.00 0.0 39.85 4.08 R
1932 1974 4.393155 CCCTGCACGCTACCTGCA 62.393 66.667 0.00 0.0 42.42 4.41 R
3295 3342 1.045911 ATCCGGAAGAGTCCCTCTGC 61.046 60.000 9.01 0.0 40.28 4.26 R
4306 6488 0.250295 TGCCTTCAGTCCTCGGTTTG 60.250 55.000 0.00 0.0 0.00 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.901840 CGGGATCAACATGGGGCG 60.902 66.667 0.00 0.00 0.00 6.13
18 19 2.275418 GGGATCAACATGGGGCGT 59.725 61.111 0.00 0.00 0.00 5.68
19 20 1.379843 GGGATCAACATGGGGCGTT 60.380 57.895 0.00 0.00 0.00 4.84
20 21 1.384222 GGGATCAACATGGGGCGTTC 61.384 60.000 0.00 0.00 0.00 3.95
21 22 1.384222 GGATCAACATGGGGCGTTCC 61.384 60.000 0.00 0.00 0.00 3.62
22 23 1.714899 GATCAACATGGGGCGTTCCG 61.715 60.000 0.00 0.00 36.01 4.30
23 24 3.439540 CAACATGGGGCGTTCCGG 61.440 66.667 0.00 0.00 36.01 5.14
24 25 4.733542 AACATGGGGCGTTCCGGG 62.734 66.667 0.00 0.00 36.01 5.73
38 39 4.473520 CGGGCGGGCTTCTGTCAT 62.474 66.667 0.26 0.00 0.00 3.06
39 40 2.044946 GGGCGGGCTTCTGTCATT 60.045 61.111 0.26 0.00 0.00 2.57
40 41 1.678970 GGGCGGGCTTCTGTCATTT 60.679 57.895 0.26 0.00 0.00 2.32
41 42 1.657751 GGGCGGGCTTCTGTCATTTC 61.658 60.000 0.26 0.00 0.00 2.17
42 43 0.678048 GGCGGGCTTCTGTCATTTCT 60.678 55.000 0.00 0.00 0.00 2.52
43 44 1.168714 GCGGGCTTCTGTCATTTCTT 58.831 50.000 0.00 0.00 0.00 2.52
44 45 1.541588 GCGGGCTTCTGTCATTTCTTT 59.458 47.619 0.00 0.00 0.00 2.52
45 46 2.414691 GCGGGCTTCTGTCATTTCTTTC 60.415 50.000 0.00 0.00 0.00 2.62
46 47 2.162408 CGGGCTTCTGTCATTTCTTTCC 59.838 50.000 0.00 0.00 0.00 3.13
47 48 3.157087 GGGCTTCTGTCATTTCTTTCCA 58.843 45.455 0.00 0.00 0.00 3.53
48 49 3.573967 GGGCTTCTGTCATTTCTTTCCAA 59.426 43.478 0.00 0.00 0.00 3.53
49 50 4.039124 GGGCTTCTGTCATTTCTTTCCAAA 59.961 41.667 0.00 0.00 0.00 3.28
50 51 4.984785 GGCTTCTGTCATTTCTTTCCAAAC 59.015 41.667 0.00 0.00 0.00 2.93
51 52 5.451798 GGCTTCTGTCATTTCTTTCCAAACA 60.452 40.000 0.00 0.00 0.00 2.83
52 53 5.460091 GCTTCTGTCATTTCTTTCCAAACAC 59.540 40.000 0.00 0.00 0.00 3.32
53 54 6.522625 TTCTGTCATTTCTTTCCAAACACA 57.477 33.333 0.00 0.00 0.00 3.72
54 55 6.522625 TCTGTCATTTCTTTCCAAACACAA 57.477 33.333 0.00 0.00 0.00 3.33
55 56 6.329496 TCTGTCATTTCTTTCCAAACACAAC 58.671 36.000 0.00 0.00 0.00 3.32
56 57 6.152661 TCTGTCATTTCTTTCCAAACACAACT 59.847 34.615 0.00 0.00 0.00 3.16
57 58 6.098679 TGTCATTTCTTTCCAAACACAACTG 58.901 36.000 0.00 0.00 0.00 3.16
58 59 6.071672 TGTCATTTCTTTCCAAACACAACTGA 60.072 34.615 0.00 0.00 0.00 3.41
59 60 6.253512 GTCATTTCTTTCCAAACACAACTGAC 59.746 38.462 0.00 0.00 0.00 3.51
60 61 4.712122 TTCTTTCCAAACACAACTGACC 57.288 40.909 0.00 0.00 0.00 4.02
61 62 3.020984 TCTTTCCAAACACAACTGACCC 58.979 45.455 0.00 0.00 0.00 4.46
62 63 1.384525 TTCCAAACACAACTGACCCG 58.615 50.000 0.00 0.00 0.00 5.28
63 64 0.542333 TCCAAACACAACTGACCCGA 59.458 50.000 0.00 0.00 0.00 5.14
64 65 1.065345 TCCAAACACAACTGACCCGAA 60.065 47.619 0.00 0.00 0.00 4.30
65 66 1.333619 CCAAACACAACTGACCCGAAG 59.666 52.381 0.00 0.00 0.00 3.79
78 79 4.452733 CGAAGGCGGTGGAGACCC 62.453 72.222 0.00 0.00 39.39 4.46
79 80 3.003763 GAAGGCGGTGGAGACCCT 61.004 66.667 0.00 0.00 39.39 4.34
80 81 2.529389 AAGGCGGTGGAGACCCTT 60.529 61.111 0.00 0.00 39.39 3.95
81 82 2.804828 GAAGGCGGTGGAGACCCTTG 62.805 65.000 0.00 0.00 39.39 3.61
84 85 4.003788 CGGTGGAGACCCTTGCGT 62.004 66.667 0.00 0.00 39.39 5.24
85 86 2.358737 GGTGGAGACCCTTGCGTG 60.359 66.667 0.00 0.00 36.03 5.34
86 87 2.426023 GTGGAGACCCTTGCGTGT 59.574 61.111 0.00 0.00 0.00 4.49
87 88 1.669440 GTGGAGACCCTTGCGTGTA 59.331 57.895 0.00 0.00 0.00 2.90
88 89 0.389948 GTGGAGACCCTTGCGTGTAG 60.390 60.000 0.00 0.00 0.00 2.74
89 90 1.218316 GGAGACCCTTGCGTGTAGG 59.782 63.158 0.00 0.00 0.00 3.18
90 91 1.448013 GAGACCCTTGCGTGTAGGC 60.448 63.158 0.00 0.00 0.00 3.93
91 92 2.813908 GACCCTTGCGTGTAGGCG 60.814 66.667 0.00 0.00 35.06 5.52
92 93 3.584868 GACCCTTGCGTGTAGGCGT 62.585 63.158 0.00 0.00 35.06 5.68
93 94 3.118454 CCCTTGCGTGTAGGCGTG 61.118 66.667 0.00 0.00 35.06 5.34
94 95 3.788766 CCTTGCGTGTAGGCGTGC 61.789 66.667 0.00 0.00 35.06 5.34
95 96 2.738521 CTTGCGTGTAGGCGTGCT 60.739 61.111 0.00 0.00 35.06 4.40
96 97 2.280524 TTGCGTGTAGGCGTGCTT 60.281 55.556 0.00 0.00 35.06 3.91
97 98 1.841663 CTTGCGTGTAGGCGTGCTTT 61.842 55.000 0.00 0.00 35.06 3.51
98 99 0.600518 TTGCGTGTAGGCGTGCTTTA 60.601 50.000 0.00 0.00 35.06 1.85
99 100 1.286354 TGCGTGTAGGCGTGCTTTAC 61.286 55.000 0.00 0.00 35.06 2.01
100 101 1.286354 GCGTGTAGGCGTGCTTTACA 61.286 55.000 0.00 5.91 0.00 2.41
101 102 0.713883 CGTGTAGGCGTGCTTTACAG 59.286 55.000 9.05 3.04 0.00 2.74
102 103 1.792006 GTGTAGGCGTGCTTTACAGT 58.208 50.000 9.05 0.00 0.00 3.55
103 104 2.140717 GTGTAGGCGTGCTTTACAGTT 58.859 47.619 9.05 0.00 0.00 3.16
104 105 2.096417 GTGTAGGCGTGCTTTACAGTTG 60.096 50.000 9.05 0.00 0.00 3.16
105 106 1.463444 GTAGGCGTGCTTTACAGTTGG 59.537 52.381 0.00 0.00 0.00 3.77
106 107 1.081442 GGCGTGCTTTACAGTTGGC 60.081 57.895 0.00 0.00 0.00 4.52
107 108 1.652012 GCGTGCTTTACAGTTGGCA 59.348 52.632 0.00 0.00 0.00 4.92
108 109 0.240945 GCGTGCTTTACAGTTGGCAT 59.759 50.000 0.00 0.00 37.05 4.40
109 110 1.729149 GCGTGCTTTACAGTTGGCATC 60.729 52.381 0.00 0.00 37.05 3.91
110 111 1.535028 CGTGCTTTACAGTTGGCATCA 59.465 47.619 0.00 0.00 37.05 3.07
111 112 2.413239 CGTGCTTTACAGTTGGCATCAG 60.413 50.000 0.00 0.00 37.05 2.90
112 113 2.813754 GTGCTTTACAGTTGGCATCAGA 59.186 45.455 0.00 0.00 37.05 3.27
113 114 3.441572 GTGCTTTACAGTTGGCATCAGAT 59.558 43.478 0.00 0.00 37.05 2.90
114 115 4.635765 GTGCTTTACAGTTGGCATCAGATA 59.364 41.667 0.00 0.00 37.05 1.98
115 116 5.297776 GTGCTTTACAGTTGGCATCAGATAT 59.702 40.000 0.00 0.00 37.05 1.63
116 117 5.297527 TGCTTTACAGTTGGCATCAGATATG 59.702 40.000 0.00 0.00 0.00 1.78
117 118 5.528690 GCTTTACAGTTGGCATCAGATATGA 59.471 40.000 0.00 0.00 0.00 2.15
118 119 6.038603 GCTTTACAGTTGGCATCAGATATGAA 59.961 38.462 0.00 0.00 0.00 2.57
119 120 7.255381 GCTTTACAGTTGGCATCAGATATGAAT 60.255 37.037 0.00 0.00 0.00 2.57
120 121 7.500720 TTACAGTTGGCATCAGATATGAATG 57.499 36.000 0.00 0.00 0.00 2.67
121 122 4.277672 ACAGTTGGCATCAGATATGAATGC 59.722 41.667 13.15 13.15 37.51 3.56
122 123 3.501062 AGTTGGCATCAGATATGAATGCG 59.499 43.478 14.36 0.00 38.99 4.73
123 124 2.429478 TGGCATCAGATATGAATGCGG 58.571 47.619 14.36 0.00 38.99 5.69
124 125 2.224597 TGGCATCAGATATGAATGCGGT 60.225 45.455 14.36 0.00 38.99 5.68
125 126 3.007831 TGGCATCAGATATGAATGCGGTA 59.992 43.478 14.36 5.45 38.99 4.02
126 127 4.002982 GGCATCAGATATGAATGCGGTAA 58.997 43.478 14.36 0.00 38.99 2.85
127 128 4.093998 GGCATCAGATATGAATGCGGTAAG 59.906 45.833 14.36 0.00 38.99 2.34
128 129 4.093998 GCATCAGATATGAATGCGGTAAGG 59.906 45.833 0.00 0.00 0.00 2.69
129 130 4.271696 TCAGATATGAATGCGGTAAGGG 57.728 45.455 0.00 0.00 0.00 3.95
130 131 3.646162 TCAGATATGAATGCGGTAAGGGT 59.354 43.478 0.00 0.00 0.00 4.34
131 132 4.102524 TCAGATATGAATGCGGTAAGGGTT 59.897 41.667 0.00 0.00 0.00 4.11
132 133 4.452455 CAGATATGAATGCGGTAAGGGTTC 59.548 45.833 0.00 0.00 0.00 3.62
133 134 2.799126 ATGAATGCGGTAAGGGTTCA 57.201 45.000 0.00 0.00 33.82 3.18
134 135 2.799126 TGAATGCGGTAAGGGTTCAT 57.201 45.000 0.00 0.00 0.00 2.57
135 136 2.364632 TGAATGCGGTAAGGGTTCATG 58.635 47.619 0.00 0.00 0.00 3.07
136 137 2.290641 TGAATGCGGTAAGGGTTCATGT 60.291 45.455 0.00 0.00 0.00 3.21
137 138 1.750193 ATGCGGTAAGGGTTCATGTG 58.250 50.000 0.00 0.00 0.00 3.21
138 139 0.322098 TGCGGTAAGGGTTCATGTGG 60.322 55.000 0.00 0.00 0.00 4.17
139 140 0.035820 GCGGTAAGGGTTCATGTGGA 60.036 55.000 0.00 0.00 0.00 4.02
140 141 2.012051 GCGGTAAGGGTTCATGTGGAG 61.012 57.143 0.00 0.00 0.00 3.86
141 142 1.278127 CGGTAAGGGTTCATGTGGAGT 59.722 52.381 0.00 0.00 0.00 3.85
142 143 2.290071 CGGTAAGGGTTCATGTGGAGTT 60.290 50.000 0.00 0.00 0.00 3.01
143 144 3.081804 GGTAAGGGTTCATGTGGAGTTG 58.918 50.000 0.00 0.00 0.00 3.16
144 145 2.292828 AAGGGTTCATGTGGAGTTGG 57.707 50.000 0.00 0.00 0.00 3.77
145 146 1.444933 AGGGTTCATGTGGAGTTGGA 58.555 50.000 0.00 0.00 0.00 3.53
146 147 1.995542 AGGGTTCATGTGGAGTTGGAT 59.004 47.619 0.00 0.00 0.00 3.41
147 148 3.189606 AGGGTTCATGTGGAGTTGGATA 58.810 45.455 0.00 0.00 0.00 2.59
148 149 3.200825 AGGGTTCATGTGGAGTTGGATAG 59.799 47.826 0.00 0.00 0.00 2.08
149 150 2.945668 GGTTCATGTGGAGTTGGATAGC 59.054 50.000 0.00 0.00 0.00 2.97
150 151 2.945668 GTTCATGTGGAGTTGGATAGCC 59.054 50.000 0.00 0.00 0.00 3.93
151 152 2.195727 TCATGTGGAGTTGGATAGCCA 58.804 47.619 0.00 0.00 44.17 4.75
168 169 1.522668 CCAAACGCTGGTGAAGATGA 58.477 50.000 0.00 0.00 40.78 2.92
169 170 2.086869 CCAAACGCTGGTGAAGATGAT 58.913 47.619 0.00 0.00 40.78 2.45
170 171 2.489329 CCAAACGCTGGTGAAGATGATT 59.511 45.455 0.00 0.00 40.78 2.57
171 172 3.426695 CCAAACGCTGGTGAAGATGATTC 60.427 47.826 0.00 0.00 40.78 2.52
172 173 1.645034 ACGCTGGTGAAGATGATTCG 58.355 50.000 0.00 0.00 0.00 3.34
173 174 0.302890 CGCTGGTGAAGATGATTCGC 59.697 55.000 0.00 0.00 0.00 4.70
174 175 0.659957 GCTGGTGAAGATGATTCGCC 59.340 55.000 12.21 12.21 46.42 5.54
178 179 2.632377 GGTGAAGATGATTCGCCAAGA 58.368 47.619 13.82 0.00 45.74 3.02
179 180 2.611292 GGTGAAGATGATTCGCCAAGAG 59.389 50.000 13.82 0.00 45.74 2.85
180 181 2.611292 GTGAAGATGATTCGCCAAGAGG 59.389 50.000 0.00 0.00 38.23 3.69
181 182 2.501316 TGAAGATGATTCGCCAAGAGGA 59.499 45.455 0.00 0.00 36.89 3.71
182 183 2.906691 AGATGATTCGCCAAGAGGAG 57.093 50.000 0.00 0.00 36.89 3.69
183 184 2.392662 AGATGATTCGCCAAGAGGAGA 58.607 47.619 0.00 0.00 42.37 3.71
187 188 2.759985 TTCGCCAAGAGGAGAAGGT 58.240 52.632 0.00 0.00 46.87 3.50
188 189 0.321671 TTCGCCAAGAGGAGAAGGTG 59.678 55.000 0.00 0.00 46.87 4.00
189 190 0.832135 TCGCCAAGAGGAGAAGGTGT 60.832 55.000 0.00 0.00 41.04 4.16
190 191 0.035458 CGCCAAGAGGAGAAGGTGTT 59.965 55.000 0.00 0.00 36.74 3.32
191 192 1.528129 GCCAAGAGGAGAAGGTGTTG 58.472 55.000 0.00 0.00 36.89 3.33
192 193 1.202818 GCCAAGAGGAGAAGGTGTTGT 60.203 52.381 0.00 0.00 36.89 3.32
193 194 2.772287 CCAAGAGGAGAAGGTGTTGTC 58.228 52.381 0.00 0.00 36.89 3.18
194 195 2.551071 CCAAGAGGAGAAGGTGTTGTCC 60.551 54.545 0.00 0.00 44.92 4.02
196 197 3.967715 GGAGAAGGTGTTGTCCGC 58.032 61.111 0.00 0.00 36.44 5.54
197 198 1.371558 GGAGAAGGTGTTGTCCGCT 59.628 57.895 0.00 0.00 36.44 5.52
198 199 0.951040 GGAGAAGGTGTTGTCCGCTG 60.951 60.000 0.00 0.00 36.44 5.18
199 200 0.249911 GAGAAGGTGTTGTCCGCTGT 60.250 55.000 0.00 0.00 0.00 4.40
200 201 0.180406 AGAAGGTGTTGTCCGCTGTT 59.820 50.000 0.00 0.00 0.00 3.16
201 202 0.307760 GAAGGTGTTGTCCGCTGTTG 59.692 55.000 0.00 0.00 0.00 3.33
202 203 1.101049 AAGGTGTTGTCCGCTGTTGG 61.101 55.000 0.00 0.00 0.00 3.77
203 204 1.822186 GGTGTTGTCCGCTGTTGGT 60.822 57.895 0.00 0.00 0.00 3.67
204 205 1.647084 GTGTTGTCCGCTGTTGGTC 59.353 57.895 0.00 0.00 0.00 4.02
205 206 1.525077 TGTTGTCCGCTGTTGGTCC 60.525 57.895 0.00 0.00 0.00 4.46
206 207 2.112297 TTGTCCGCTGTTGGTCCC 59.888 61.111 0.00 0.00 0.00 4.46
207 208 2.448582 TTGTCCGCTGTTGGTCCCT 61.449 57.895 0.00 0.00 0.00 4.20
208 209 2.358737 GTCCGCTGTTGGTCCCTG 60.359 66.667 0.00 0.00 0.00 4.45
209 210 3.636231 TCCGCTGTTGGTCCCTGG 61.636 66.667 0.00 0.00 0.00 4.45
210 211 3.636231 CCGCTGTTGGTCCCTGGA 61.636 66.667 0.00 0.00 0.00 3.86
211 212 2.671070 CGCTGTTGGTCCCTGGAT 59.329 61.111 0.00 0.00 0.00 3.41
212 213 1.002134 CGCTGTTGGTCCCTGGATT 60.002 57.895 0.00 0.00 0.00 3.01
213 214 1.026718 CGCTGTTGGTCCCTGGATTC 61.027 60.000 0.00 0.00 0.00 2.52
214 215 0.038166 GCTGTTGGTCCCTGGATTCA 59.962 55.000 0.00 0.00 0.00 2.57
215 216 1.952367 GCTGTTGGTCCCTGGATTCAG 60.952 57.143 0.00 0.00 40.59 3.02
230 231 7.035840 CTGGATTCAGGAAATTAAGGACATG 57.964 40.000 0.00 0.00 37.36 3.21
231 232 5.360714 TGGATTCAGGAAATTAAGGACATGC 59.639 40.000 0.00 0.00 0.00 4.06
232 233 5.595952 GGATTCAGGAAATTAAGGACATGCT 59.404 40.000 0.00 0.00 0.00 3.79
233 234 6.238869 GGATTCAGGAAATTAAGGACATGCTC 60.239 42.308 0.00 0.00 0.00 4.26
234 235 5.178096 TCAGGAAATTAAGGACATGCTCA 57.822 39.130 0.00 0.00 0.00 4.26
235 236 5.569355 TCAGGAAATTAAGGACATGCTCAA 58.431 37.500 0.00 0.00 0.00 3.02
236 237 5.415701 TCAGGAAATTAAGGACATGCTCAAC 59.584 40.000 0.00 0.00 0.00 3.18
237 238 5.416952 CAGGAAATTAAGGACATGCTCAACT 59.583 40.000 0.00 0.00 0.00 3.16
238 239 5.649831 AGGAAATTAAGGACATGCTCAACTC 59.350 40.000 0.00 0.00 0.00 3.01
239 240 5.447818 GGAAATTAAGGACATGCTCAACTCG 60.448 44.000 0.00 0.00 0.00 4.18
240 241 3.678056 TTAAGGACATGCTCAACTCGT 57.322 42.857 0.00 0.00 0.00 4.18
241 242 2.550830 AAGGACATGCTCAACTCGTT 57.449 45.000 0.00 0.00 0.00 3.85
242 243 2.550830 AGGACATGCTCAACTCGTTT 57.449 45.000 0.00 0.00 0.00 3.60
243 244 3.678056 AGGACATGCTCAACTCGTTTA 57.322 42.857 0.00 0.00 0.00 2.01
244 245 3.326747 AGGACATGCTCAACTCGTTTAC 58.673 45.455 0.00 0.00 0.00 2.01
245 246 3.064207 GGACATGCTCAACTCGTTTACA 58.936 45.455 0.00 0.00 0.00 2.41
246 247 3.123621 GGACATGCTCAACTCGTTTACAG 59.876 47.826 0.00 0.00 0.00 2.74
247 248 3.987868 GACATGCTCAACTCGTTTACAGA 59.012 43.478 0.00 0.00 0.00 3.41
248 249 3.990469 ACATGCTCAACTCGTTTACAGAG 59.010 43.478 0.00 0.00 41.27 3.35
256 257 4.667519 ACTCGTTTACAGAGTTCAAGGT 57.332 40.909 0.00 0.00 45.74 3.50
257 258 5.019785 ACTCGTTTACAGAGTTCAAGGTT 57.980 39.130 0.00 0.00 45.74 3.50
258 259 4.809426 ACTCGTTTACAGAGTTCAAGGTTG 59.191 41.667 0.00 0.00 45.74 3.77
259 260 3.558418 TCGTTTACAGAGTTCAAGGTTGC 59.442 43.478 0.00 0.00 0.00 4.17
260 261 3.560068 CGTTTACAGAGTTCAAGGTTGCT 59.440 43.478 0.00 0.00 0.00 3.91
261 262 4.035208 CGTTTACAGAGTTCAAGGTTGCTT 59.965 41.667 0.00 0.00 0.00 3.91
262 263 5.273944 GTTTACAGAGTTCAAGGTTGCTTG 58.726 41.667 0.00 0.00 35.78 4.01
263 264 2.301346 ACAGAGTTCAAGGTTGCTTGG 58.699 47.619 0.00 0.00 35.23 3.61
264 265 1.610522 CAGAGTTCAAGGTTGCTTGGG 59.389 52.381 0.00 0.00 35.23 4.12
265 266 1.215423 AGAGTTCAAGGTTGCTTGGGT 59.785 47.619 0.00 0.00 35.23 4.51
266 267 2.031870 GAGTTCAAGGTTGCTTGGGTT 58.968 47.619 0.00 0.00 35.23 4.11
267 268 3.117663 AGAGTTCAAGGTTGCTTGGGTTA 60.118 43.478 0.00 0.00 35.23 2.85
268 269 3.222603 AGTTCAAGGTTGCTTGGGTTAG 58.777 45.455 0.00 0.00 35.23 2.34
269 270 2.286365 TCAAGGTTGCTTGGGTTAGG 57.714 50.000 0.00 0.00 35.23 2.69
270 271 1.777878 TCAAGGTTGCTTGGGTTAGGA 59.222 47.619 0.00 0.00 35.23 2.94
271 272 2.162681 CAAGGTTGCTTGGGTTAGGAG 58.837 52.381 0.00 0.00 0.00 3.69
272 273 1.742308 AGGTTGCTTGGGTTAGGAGA 58.258 50.000 0.00 0.00 0.00 3.71
273 274 2.279173 AGGTTGCTTGGGTTAGGAGAT 58.721 47.619 0.00 0.00 0.00 2.75
274 275 2.239907 AGGTTGCTTGGGTTAGGAGATC 59.760 50.000 0.00 0.00 0.00 2.75
275 276 2.026262 GGTTGCTTGGGTTAGGAGATCA 60.026 50.000 0.00 0.00 0.00 2.92
276 277 3.274288 GTTGCTTGGGTTAGGAGATCAG 58.726 50.000 0.00 0.00 0.00 2.90
277 278 1.210478 TGCTTGGGTTAGGAGATCAGC 59.790 52.381 0.00 0.00 0.00 4.26
278 279 1.475930 GCTTGGGTTAGGAGATCAGCC 60.476 57.143 0.00 0.00 0.00 4.85
279 280 1.839994 CTTGGGTTAGGAGATCAGCCA 59.160 52.381 7.30 2.48 36.28 4.75
280 281 1.965414 TGGGTTAGGAGATCAGCCAA 58.035 50.000 7.30 0.00 35.13 4.52
281 282 2.492025 TGGGTTAGGAGATCAGCCAAT 58.508 47.619 7.30 0.00 35.13 3.16
282 283 2.173356 TGGGTTAGGAGATCAGCCAATG 59.827 50.000 7.30 0.00 35.13 2.82
283 284 2.173569 GGGTTAGGAGATCAGCCAATGT 59.826 50.000 7.30 0.00 0.00 2.71
284 285 3.471680 GGTTAGGAGATCAGCCAATGTC 58.528 50.000 7.30 0.00 0.00 3.06
285 286 3.126831 GTTAGGAGATCAGCCAATGTCG 58.873 50.000 7.30 0.00 0.00 4.35
286 287 0.179062 AGGAGATCAGCCAATGTCGC 60.179 55.000 7.30 0.00 0.00 5.19
287 288 0.462581 GGAGATCAGCCAATGTCGCA 60.463 55.000 0.00 0.00 0.00 5.10
288 289 0.935898 GAGATCAGCCAATGTCGCAG 59.064 55.000 0.00 0.00 0.00 5.18
289 290 1.094073 AGATCAGCCAATGTCGCAGC 61.094 55.000 0.00 0.00 0.00 5.25
290 291 1.371337 GATCAGCCAATGTCGCAGCA 61.371 55.000 0.00 0.00 0.00 4.41
291 292 1.651240 ATCAGCCAATGTCGCAGCAC 61.651 55.000 0.00 0.00 0.00 4.40
292 293 2.281692 AGCCAATGTCGCAGCACA 60.282 55.556 0.00 0.00 0.00 4.57
293 294 2.126734 GCCAATGTCGCAGCACAC 60.127 61.111 0.00 0.00 0.00 3.82
294 295 2.906939 GCCAATGTCGCAGCACACA 61.907 57.895 0.00 0.00 0.00 3.72
295 296 1.653667 CCAATGTCGCAGCACACAA 59.346 52.632 0.00 0.00 0.00 3.33
296 297 0.386352 CCAATGTCGCAGCACACAAG 60.386 55.000 0.00 0.00 0.00 3.16
297 298 1.000233 CAATGTCGCAGCACACAAGC 61.000 55.000 0.00 0.00 0.00 4.01
299 300 1.168407 ATGTCGCAGCACACAAGCTT 61.168 50.000 0.00 0.00 43.70 3.74
300 301 1.369689 GTCGCAGCACACAAGCTTG 60.370 57.895 24.84 24.84 43.70 4.01
301 302 2.728383 CGCAGCACACAAGCTTGC 60.728 61.111 26.27 13.38 43.70 4.01
307 308 1.517242 GCACACAAGCTTGCTAGAGT 58.483 50.000 26.27 13.71 35.74 3.24
308 309 2.688507 GCACACAAGCTTGCTAGAGTA 58.311 47.619 26.27 0.00 35.74 2.59
309 310 2.670414 GCACACAAGCTTGCTAGAGTAG 59.330 50.000 26.27 8.77 35.74 2.57
310 311 3.257393 CACACAAGCTTGCTAGAGTAGG 58.743 50.000 26.27 7.15 0.00 3.18
311 312 2.234908 ACACAAGCTTGCTAGAGTAGGG 59.765 50.000 26.27 0.45 0.00 3.53
312 313 1.834263 ACAAGCTTGCTAGAGTAGGGG 59.166 52.381 26.27 0.00 0.00 4.79
313 314 1.834263 CAAGCTTGCTAGAGTAGGGGT 59.166 52.381 14.65 0.00 0.00 4.95
314 315 3.031736 CAAGCTTGCTAGAGTAGGGGTA 58.968 50.000 14.65 0.00 0.00 3.69
315 316 2.952116 AGCTTGCTAGAGTAGGGGTAG 58.048 52.381 0.00 0.00 0.00 3.18
316 317 1.964933 GCTTGCTAGAGTAGGGGTAGG 59.035 57.143 0.00 0.00 0.00 3.18
317 318 2.424523 GCTTGCTAGAGTAGGGGTAGGA 60.425 54.545 0.00 0.00 0.00 2.94
318 319 3.492337 CTTGCTAGAGTAGGGGTAGGAG 58.508 54.545 0.00 0.00 0.00 3.69
319 320 2.785436 TGCTAGAGTAGGGGTAGGAGA 58.215 52.381 0.00 0.00 0.00 3.71
320 321 2.712087 TGCTAGAGTAGGGGTAGGAGAG 59.288 54.545 0.00 0.00 0.00 3.20
321 322 2.040679 GCTAGAGTAGGGGTAGGAGAGG 59.959 59.091 0.00 0.00 0.00 3.69
322 323 2.609609 AGAGTAGGGGTAGGAGAGGA 57.390 55.000 0.00 0.00 0.00 3.71
323 324 2.424793 AGAGTAGGGGTAGGAGAGGAG 58.575 57.143 0.00 0.00 0.00 3.69
324 325 2.020842 AGAGTAGGGGTAGGAGAGGAGA 60.021 54.545 0.00 0.00 0.00 3.71
325 326 2.374170 GAGTAGGGGTAGGAGAGGAGAG 59.626 59.091 0.00 0.00 0.00 3.20
326 327 2.020842 AGTAGGGGTAGGAGAGGAGAGA 60.021 54.545 0.00 0.00 0.00 3.10
327 328 2.238819 AGGGGTAGGAGAGGAGAGAT 57.761 55.000 0.00 0.00 0.00 2.75
328 329 2.070573 AGGGGTAGGAGAGGAGAGATC 58.929 57.143 0.00 0.00 0.00 2.75
329 330 1.783979 GGGGTAGGAGAGGAGAGATCA 59.216 57.143 0.00 0.00 0.00 2.92
330 331 2.225017 GGGGTAGGAGAGGAGAGATCAG 60.225 59.091 0.00 0.00 0.00 2.90
331 332 2.714250 GGGTAGGAGAGGAGAGATCAGA 59.286 54.545 0.00 0.00 0.00 3.27
332 333 3.244911 GGGTAGGAGAGGAGAGATCAGAG 60.245 56.522 0.00 0.00 0.00 3.35
333 334 3.394606 GGTAGGAGAGGAGAGATCAGAGT 59.605 52.174 0.00 0.00 0.00 3.24
334 335 3.864789 AGGAGAGGAGAGATCAGAGTC 57.135 52.381 0.00 0.00 0.00 3.36
335 336 3.397527 AGGAGAGGAGAGATCAGAGTCT 58.602 50.000 0.00 0.00 0.00 3.24
336 337 3.788142 AGGAGAGGAGAGATCAGAGTCTT 59.212 47.826 0.00 0.00 0.00 3.01
337 338 3.885297 GGAGAGGAGAGATCAGAGTCTTG 59.115 52.174 0.00 0.00 0.00 3.02
338 339 3.885297 GAGAGGAGAGATCAGAGTCTTGG 59.115 52.174 0.00 0.00 0.00 3.61
339 340 3.269381 AGAGGAGAGATCAGAGTCTTGGT 59.731 47.826 0.00 0.00 0.00 3.67
340 341 4.023291 GAGGAGAGATCAGAGTCTTGGTT 58.977 47.826 0.00 0.00 0.00 3.67
341 342 4.424842 AGGAGAGATCAGAGTCTTGGTTT 58.575 43.478 0.00 0.00 0.00 3.27
342 343 4.466015 AGGAGAGATCAGAGTCTTGGTTTC 59.534 45.833 0.00 0.00 0.00 2.78
343 344 4.221703 GGAGAGATCAGAGTCTTGGTTTCA 59.778 45.833 0.00 0.00 0.00 2.69
344 345 5.104982 GGAGAGATCAGAGTCTTGGTTTCAT 60.105 44.000 0.00 0.00 0.00 2.57
345 346 6.097554 GGAGAGATCAGAGTCTTGGTTTCATA 59.902 42.308 0.00 0.00 0.00 2.15
346 347 6.872920 AGAGATCAGAGTCTTGGTTTCATAC 58.127 40.000 0.00 0.00 0.00 2.39
347 348 6.667414 AGAGATCAGAGTCTTGGTTTCATACT 59.333 38.462 0.00 0.00 0.00 2.12
348 349 6.872920 AGATCAGAGTCTTGGTTTCATACTC 58.127 40.000 0.00 0.00 36.93 2.59
349 350 5.407407 TCAGAGTCTTGGTTTCATACTCC 57.593 43.478 0.00 0.00 37.16 3.85
350 351 5.087323 TCAGAGTCTTGGTTTCATACTCCT 58.913 41.667 0.00 0.00 37.16 3.69
351 352 5.186021 TCAGAGTCTTGGTTTCATACTCCTC 59.814 44.000 0.00 0.00 37.16 3.71
352 353 4.468153 AGAGTCTTGGTTTCATACTCCTCC 59.532 45.833 0.00 0.00 37.16 4.30
353 354 4.430441 AGTCTTGGTTTCATACTCCTCCT 58.570 43.478 0.00 0.00 0.00 3.69
354 355 4.223923 AGTCTTGGTTTCATACTCCTCCTG 59.776 45.833 0.00 0.00 0.00 3.86
355 356 4.223032 GTCTTGGTTTCATACTCCTCCTGA 59.777 45.833 0.00 0.00 0.00 3.86
356 357 5.032846 TCTTGGTTTCATACTCCTCCTGAT 58.967 41.667 0.00 0.00 0.00 2.90
357 358 5.488919 TCTTGGTTTCATACTCCTCCTGATT 59.511 40.000 0.00 0.00 0.00 2.57
358 359 5.779241 TGGTTTCATACTCCTCCTGATTT 57.221 39.130 0.00 0.00 0.00 2.17
359 360 6.139679 TGGTTTCATACTCCTCCTGATTTT 57.860 37.500 0.00 0.00 0.00 1.82
360 361 7.265599 TGGTTTCATACTCCTCCTGATTTTA 57.734 36.000 0.00 0.00 0.00 1.52
361 362 7.872138 TGGTTTCATACTCCTCCTGATTTTAT 58.128 34.615 0.00 0.00 0.00 1.40
362 363 8.336235 TGGTTTCATACTCCTCCTGATTTTATT 58.664 33.333 0.00 0.00 0.00 1.40
363 364 9.190317 GGTTTCATACTCCTCCTGATTTTATTT 57.810 33.333 0.00 0.00 0.00 1.40
385 386 8.608844 ATTTTATCTGTAATCTCGGACATTCC 57.391 34.615 0.00 0.00 0.00 3.01
386 387 6.724893 TTATCTGTAATCTCGGACATTCCA 57.275 37.500 0.00 0.00 35.91 3.53
387 388 5.614324 ATCTGTAATCTCGGACATTCCAA 57.386 39.130 0.00 0.00 35.91 3.53
388 389 5.414789 TCTGTAATCTCGGACATTCCAAA 57.585 39.130 0.00 0.00 35.91 3.28
389 390 5.175859 TCTGTAATCTCGGACATTCCAAAC 58.824 41.667 0.00 0.00 35.91 2.93
390 391 5.046591 TCTGTAATCTCGGACATTCCAAACT 60.047 40.000 0.00 0.00 35.91 2.66
391 392 5.556915 TGTAATCTCGGACATTCCAAACTT 58.443 37.500 0.00 0.00 35.91 2.66
392 393 6.703319 TGTAATCTCGGACATTCCAAACTTA 58.297 36.000 0.00 0.00 35.91 2.24
393 394 6.816640 TGTAATCTCGGACATTCCAAACTTAG 59.183 38.462 0.00 0.00 35.91 2.18
394 395 4.884668 TCTCGGACATTCCAAACTTAGT 57.115 40.909 0.00 0.00 35.91 2.24
395 396 4.817517 TCTCGGACATTCCAAACTTAGTC 58.182 43.478 0.00 0.00 35.91 2.59
396 397 4.282449 TCTCGGACATTCCAAACTTAGTCA 59.718 41.667 0.00 0.00 35.91 3.41
397 398 4.963373 TCGGACATTCCAAACTTAGTCAA 58.037 39.130 0.00 0.00 35.91 3.18
398 399 5.556915 TCGGACATTCCAAACTTAGTCAAT 58.443 37.500 0.00 0.00 35.91 2.57
399 400 6.703319 TCGGACATTCCAAACTTAGTCAATA 58.297 36.000 0.00 0.00 35.91 1.90
400 401 7.162761 TCGGACATTCCAAACTTAGTCAATAA 58.837 34.615 0.00 0.00 35.91 1.40
401 402 7.662258 TCGGACATTCCAAACTTAGTCAATAAA 59.338 33.333 0.00 0.00 35.91 1.40
402 403 7.962918 CGGACATTCCAAACTTAGTCAATAAAG 59.037 37.037 0.00 0.00 35.91 1.85
403 404 7.755373 GGACATTCCAAACTTAGTCAATAAAGC 59.245 37.037 0.00 0.00 36.28 3.51
404 405 8.177119 ACATTCCAAACTTAGTCAATAAAGCA 57.823 30.769 0.00 0.00 0.00 3.91
405 406 8.299570 ACATTCCAAACTTAGTCAATAAAGCAG 58.700 33.333 0.00 0.00 0.00 4.24
406 407 6.254281 TCCAAACTTAGTCAATAAAGCAGC 57.746 37.500 0.00 0.00 0.00 5.25
407 408 5.088739 CCAAACTTAGTCAATAAAGCAGCG 58.911 41.667 0.00 0.00 0.00 5.18
408 409 4.946784 AACTTAGTCAATAAAGCAGCGG 57.053 40.909 0.00 0.00 0.00 5.52
409 410 2.678336 ACTTAGTCAATAAAGCAGCGGC 59.322 45.455 0.00 0.00 41.61 6.53
410 411 2.394930 TAGTCAATAAAGCAGCGGCA 57.605 45.000 12.44 0.00 44.61 5.69
411 412 1.533625 AGTCAATAAAGCAGCGGCAA 58.466 45.000 12.44 0.00 44.61 4.52
412 413 1.470098 AGTCAATAAAGCAGCGGCAAG 59.530 47.619 12.44 0.00 44.61 4.01
413 414 1.200020 GTCAATAAAGCAGCGGCAAGT 59.800 47.619 12.44 0.00 44.61 3.16
414 415 1.885887 TCAATAAAGCAGCGGCAAGTT 59.114 42.857 12.44 4.68 44.61 2.66
415 416 1.987770 CAATAAAGCAGCGGCAAGTTG 59.012 47.619 12.44 6.73 44.61 3.16
416 417 1.247567 ATAAAGCAGCGGCAAGTTGT 58.752 45.000 12.44 0.00 44.61 3.32
417 418 1.885560 TAAAGCAGCGGCAAGTTGTA 58.114 45.000 12.44 0.00 44.61 2.41
418 419 0.310854 AAAGCAGCGGCAAGTTGTAC 59.689 50.000 12.44 0.00 44.61 2.90
419 420 1.515521 AAGCAGCGGCAAGTTGTACC 61.516 55.000 12.44 0.00 44.61 3.34
420 421 1.966451 GCAGCGGCAAGTTGTACCT 60.966 57.895 3.18 0.00 40.72 3.08
421 422 0.672401 GCAGCGGCAAGTTGTACCTA 60.672 55.000 3.18 0.00 40.72 3.08
422 423 1.803334 CAGCGGCAAGTTGTACCTAA 58.197 50.000 1.45 0.00 0.00 2.69
423 424 2.147958 CAGCGGCAAGTTGTACCTAAA 58.852 47.619 1.45 0.00 0.00 1.85
424 425 2.550606 CAGCGGCAAGTTGTACCTAAAA 59.449 45.455 1.45 0.00 0.00 1.52
425 426 3.003897 CAGCGGCAAGTTGTACCTAAAAA 59.996 43.478 1.45 0.00 0.00 1.94
458 459 0.107993 CACCACATGACCTCATCGCT 60.108 55.000 0.00 0.00 33.61 4.93
463 464 0.463204 CATGACCTCATCGCTCACCT 59.537 55.000 0.00 0.00 33.61 4.00
634 642 2.115427 CCCTCTTCTTCCTCCTCTTCC 58.885 57.143 0.00 0.00 0.00 3.46
693 705 2.018086 CCCTCTCTCTCCCCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
917 941 1.417890 ACCGAGCCAAGAATCCATAGG 59.582 52.381 0.00 0.00 0.00 2.57
1042 1066 4.295870 CGCCTAGTATTATTGTCTTCGCA 58.704 43.478 0.00 0.00 0.00 5.10
1276 1300 7.362401 CCAAATGGAGACGATTTCTTTGATCTT 60.362 37.037 0.00 0.00 37.39 2.40
1322 1358 0.111253 ACAGAAGAAGGCCAACCCTG 59.889 55.000 5.01 8.06 45.62 4.45
1323 1359 0.610232 CAGAAGAAGGCCAACCCTGG 60.610 60.000 5.01 0.00 45.62 4.45
1402 1438 1.903877 ATGGTGACCCTGAGAAGGCG 61.904 60.000 0.00 0.00 0.00 5.52
1554 1590 9.120538 CCATATAAGCAGTACCTTGTTATGTTT 57.879 33.333 0.00 0.00 0.00 2.83
1590 1629 6.985188 TGGAGATGAAATGCTTTGTACTAC 57.015 37.500 0.00 0.00 0.00 2.73
1719 1758 7.776969 ACTATGAATGTGGTTAAAGATGCATCT 59.223 33.333 23.75 23.75 39.22 2.90
1754 1793 4.403432 ACATGGAGATGGTTTGCTTAATGG 59.597 41.667 0.00 0.00 33.39 3.16
2484 2528 2.551912 CCCTTGCGACAAAAGCGGT 61.552 57.895 0.00 0.00 37.44 5.68
2521 2565 2.618241 TGTCCACACTGCTCAAAACATC 59.382 45.455 0.00 0.00 0.00 3.06
2550 2594 5.522460 CACGTGGAAACTTCAAAAGAGTAGA 59.478 40.000 7.95 0.00 0.00 2.59
2551 2595 6.202954 CACGTGGAAACTTCAAAAGAGTAGAT 59.797 38.462 7.95 0.00 0.00 1.98
2585 2629 3.006940 GGTCACACAATCCGAAATGCTA 58.993 45.455 0.00 0.00 0.00 3.49
2589 2633 2.418628 ACACAATCCGAAATGCTAACCG 59.581 45.455 0.00 0.00 0.00 4.44
2619 2663 1.958288 AGTGCTCCAATCAGTACCCT 58.042 50.000 0.00 0.00 29.66 4.34
2687 2731 7.952671 TCAAGCTATACCAGGAACTAATACTG 58.047 38.462 0.00 0.00 36.02 2.74
2689 2733 6.078664 AGCTATACCAGGAACTAATACTGCT 58.921 40.000 0.00 0.00 36.02 4.24
2717 2764 2.945008 TCTCAGCAAGTTCAACCACAAG 59.055 45.455 0.00 0.00 0.00 3.16
2821 2868 0.035630 GTCAGCTGGCACCATCTTCT 60.036 55.000 14.88 0.00 0.00 2.85
2893 2940 3.491619 GCACCTCGCTTATGAATGAGAGA 60.492 47.826 0.00 0.00 37.77 3.10
2983 3030 2.613977 GGCATCGGATCTGGGAGTATTG 60.614 54.545 0.62 0.00 0.00 1.90
3015 3062 6.014925 TCTGCTTACAATACCAGTACTTCACA 60.015 38.462 0.00 0.00 0.00 3.58
3016 3063 6.707290 TGCTTACAATACCAGTACTTCACAT 58.293 36.000 0.00 0.00 0.00 3.21
3078 3125 1.908299 GTGCAAACCAAGGGGAGGG 60.908 63.158 0.00 0.00 38.05 4.30
3129 3176 4.222145 AGCGGTAAACCTGATGACTTCTAA 59.778 41.667 0.00 0.00 0.00 2.10
3295 3342 7.312657 TGAATTATTGTTAGAAGCTGCTCAG 57.687 36.000 0.00 0.00 0.00 3.35
3439 3494 3.085533 TGGACAATAAAACCGGTGATGG 58.914 45.455 8.52 2.14 0.00 3.51
3612 3668 7.168302 CCTTAGATGCTAGTAATCTTTGTCACG 59.832 40.741 13.26 0.00 35.92 4.35
3648 3704 3.873952 GCAGAATTTCCACTACCTAGCTG 59.126 47.826 0.00 0.00 0.00 4.24
3666 3722 7.071196 ACCTAGCTGTTGGTCATATTTCTATGA 59.929 37.037 0.00 0.00 41.12 2.15
3817 3873 4.317530 TTCTTAGCTGGAGAGTAGTCCA 57.682 45.455 0.00 0.00 44.82 4.02
3909 3966 5.425862 AGAATAACTAGGGACAGAGGGTTTC 59.574 44.000 0.00 0.00 0.00 2.78
3932 3989 4.463050 TTCCCTGGTTATTGTGTTCCTT 57.537 40.909 0.00 0.00 0.00 3.36
3964 4021 3.866651 AGGTGCAGAATAACTAGTGCTG 58.133 45.455 0.00 3.65 36.84 4.41
4059 4117 1.804151 TGTTCGCTAACCTCAACATGC 59.196 47.619 0.00 0.00 34.49 4.06
4073 4131 0.615331 ACATGCAACGATCTGTCCCT 59.385 50.000 0.00 0.00 0.00 4.20
4170 6263 2.258286 GTGTGGGTGAATTGCGGC 59.742 61.111 0.00 0.00 0.00 6.53
4193 6286 2.330231 ATTGTTCGCATGTTTCCGTG 57.670 45.000 0.00 0.00 0.00 4.94
4229 6322 8.497910 AATTGATACCCTGCTTCTCTTCTATA 57.502 34.615 0.00 0.00 0.00 1.31
4306 6488 2.693074 ACAAGGTGGAATTGTTGGTGTC 59.307 45.455 0.00 0.00 37.61 3.67
4351 6533 6.500336 GGGTGAGGATTACTGGGTATCTATA 58.500 44.000 0.00 0.00 0.00 1.31
4356 6538 9.837681 TGAGGATTACTGGGTATCTATATGAAA 57.162 33.333 0.00 0.00 0.00 2.69
4375 6557 2.496899 ATCGTCAGAAAGTGGCCAAT 57.503 45.000 7.24 1.65 0.00 3.16
4377 6559 1.879380 TCGTCAGAAAGTGGCCAATTG 59.121 47.619 20.84 8.23 0.00 2.32
4393 6575 5.758296 GGCCAATTGTTTCGAGATATAGTGA 59.242 40.000 4.43 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.901840 CGCCCCATGTTGATCCCG 60.902 66.667 0.00 0.00 0.00 5.14
1 2 1.379843 AACGCCCCATGTTGATCCC 60.380 57.895 0.00 0.00 0.00 3.85
3 4 2.106844 GGAACGCCCCATGTTGATC 58.893 57.895 0.00 0.00 0.00 2.92
4 5 4.337013 GGAACGCCCCATGTTGAT 57.663 55.556 0.00 0.00 0.00 2.57
21 22 3.976701 AATGACAGAAGCCCGCCCG 62.977 63.158 0.00 0.00 0.00 6.13
22 23 1.657751 GAAATGACAGAAGCCCGCCC 61.658 60.000 0.00 0.00 0.00 6.13
23 24 0.678048 AGAAATGACAGAAGCCCGCC 60.678 55.000 0.00 0.00 0.00 6.13
24 25 1.168714 AAGAAATGACAGAAGCCCGC 58.831 50.000 0.00 0.00 0.00 6.13
25 26 2.162408 GGAAAGAAATGACAGAAGCCCG 59.838 50.000 0.00 0.00 0.00 6.13
26 27 3.157087 TGGAAAGAAATGACAGAAGCCC 58.843 45.455 0.00 0.00 0.00 5.19
27 28 4.853924 TTGGAAAGAAATGACAGAAGCC 57.146 40.909 0.00 0.00 0.00 4.35
28 29 5.460091 GTGTTTGGAAAGAAATGACAGAAGC 59.540 40.000 0.00 0.00 0.00 3.86
29 30 6.563422 TGTGTTTGGAAAGAAATGACAGAAG 58.437 36.000 0.00 0.00 0.00 2.85
30 31 6.522625 TGTGTTTGGAAAGAAATGACAGAA 57.477 33.333 0.00 0.00 0.00 3.02
31 32 6.152661 AGTTGTGTTTGGAAAGAAATGACAGA 59.847 34.615 0.00 0.00 0.00 3.41
32 33 6.254157 CAGTTGTGTTTGGAAAGAAATGACAG 59.746 38.462 0.00 0.00 0.00 3.51
33 34 6.071672 TCAGTTGTGTTTGGAAAGAAATGACA 60.072 34.615 0.00 0.00 0.00 3.58
34 35 6.253512 GTCAGTTGTGTTTGGAAAGAAATGAC 59.746 38.462 0.00 0.00 0.00 3.06
35 36 6.329496 GTCAGTTGTGTTTGGAAAGAAATGA 58.671 36.000 0.00 0.00 0.00 2.57
36 37 5.519927 GGTCAGTTGTGTTTGGAAAGAAATG 59.480 40.000 0.00 0.00 0.00 2.32
37 38 5.395214 GGGTCAGTTGTGTTTGGAAAGAAAT 60.395 40.000 0.00 0.00 0.00 2.17
38 39 4.081917 GGGTCAGTTGTGTTTGGAAAGAAA 60.082 41.667 0.00 0.00 0.00 2.52
39 40 3.445805 GGGTCAGTTGTGTTTGGAAAGAA 59.554 43.478 0.00 0.00 0.00 2.52
40 41 3.020984 GGGTCAGTTGTGTTTGGAAAGA 58.979 45.455 0.00 0.00 0.00 2.52
41 42 2.223479 CGGGTCAGTTGTGTTTGGAAAG 60.223 50.000 0.00 0.00 0.00 2.62
42 43 1.746220 CGGGTCAGTTGTGTTTGGAAA 59.254 47.619 0.00 0.00 0.00 3.13
43 44 1.065345 TCGGGTCAGTTGTGTTTGGAA 60.065 47.619 0.00 0.00 0.00 3.53
44 45 0.542333 TCGGGTCAGTTGTGTTTGGA 59.458 50.000 0.00 0.00 0.00 3.53
45 46 1.333619 CTTCGGGTCAGTTGTGTTTGG 59.666 52.381 0.00 0.00 0.00 3.28
46 47 1.333619 CCTTCGGGTCAGTTGTGTTTG 59.666 52.381 0.00 0.00 0.00 2.93
47 48 1.675552 CCTTCGGGTCAGTTGTGTTT 58.324 50.000 0.00 0.00 0.00 2.83
48 49 0.818040 GCCTTCGGGTCAGTTGTGTT 60.818 55.000 0.00 0.00 37.45 3.32
49 50 1.227853 GCCTTCGGGTCAGTTGTGT 60.228 57.895 0.00 0.00 37.45 3.72
50 51 2.317609 CGCCTTCGGGTCAGTTGTG 61.318 63.158 0.00 0.00 37.45 3.33
51 52 2.030562 CGCCTTCGGGTCAGTTGT 59.969 61.111 0.00 0.00 37.45 3.32
61 62 4.452733 GGGTCTCCACCGCCTTCG 62.453 72.222 0.00 0.00 44.91 3.79
62 63 2.593956 AAGGGTCTCCACCGCCTTC 61.594 63.158 0.00 0.00 44.91 3.46
63 64 2.529389 AAGGGTCTCCACCGCCTT 60.529 61.111 0.00 0.00 44.91 4.35
64 65 3.322466 CAAGGGTCTCCACCGCCT 61.322 66.667 0.00 0.00 44.91 5.52
67 68 4.003788 ACGCAAGGGTCTCCACCG 62.004 66.667 0.00 0.00 44.91 4.94
68 69 2.358737 CACGCAAGGGTCTCCACC 60.359 66.667 0.00 0.00 46.39 4.61
77 78 3.788766 GCACGCCTACACGCAAGG 61.789 66.667 0.00 0.00 46.39 3.61
79 80 0.600518 TAAAGCACGCCTACACGCAA 60.601 50.000 0.00 0.00 36.19 4.85
80 81 1.005984 TAAAGCACGCCTACACGCA 60.006 52.632 0.00 0.00 36.19 5.24
81 82 1.286354 TGTAAAGCACGCCTACACGC 61.286 55.000 0.00 0.00 36.19 5.34
82 83 0.713883 CTGTAAAGCACGCCTACACG 59.286 55.000 0.00 0.00 39.50 4.49
83 84 1.792006 ACTGTAAAGCACGCCTACAC 58.208 50.000 0.00 0.00 0.00 2.90
84 85 2.139917 CAACTGTAAAGCACGCCTACA 58.860 47.619 0.00 2.63 0.00 2.74
85 86 1.463444 CCAACTGTAAAGCACGCCTAC 59.537 52.381 0.00 0.00 0.00 3.18
86 87 1.803334 CCAACTGTAAAGCACGCCTA 58.197 50.000 0.00 0.00 0.00 3.93
87 88 1.515521 GCCAACTGTAAAGCACGCCT 61.516 55.000 0.00 0.00 0.00 5.52
88 89 1.081442 GCCAACTGTAAAGCACGCC 60.081 57.895 0.00 0.00 0.00 5.68
89 90 0.240945 ATGCCAACTGTAAAGCACGC 59.759 50.000 2.02 0.00 38.21 5.34
90 91 1.535028 TGATGCCAACTGTAAAGCACG 59.465 47.619 2.02 0.00 38.21 5.34
91 92 2.813754 TCTGATGCCAACTGTAAAGCAC 59.186 45.455 2.02 0.00 38.21 4.40
92 93 3.138884 TCTGATGCCAACTGTAAAGCA 57.861 42.857 2.42 2.42 40.00 3.91
93 94 5.528690 TCATATCTGATGCCAACTGTAAAGC 59.471 40.000 0.00 0.00 0.00 3.51
94 95 7.558161 TTCATATCTGATGCCAACTGTAAAG 57.442 36.000 0.00 0.00 0.00 1.85
95 96 7.469043 GCATTCATATCTGATGCCAACTGTAAA 60.469 37.037 0.00 0.00 33.49 2.01
96 97 6.016860 GCATTCATATCTGATGCCAACTGTAA 60.017 38.462 0.00 0.00 33.49 2.41
97 98 5.471116 GCATTCATATCTGATGCCAACTGTA 59.529 40.000 0.00 0.00 33.49 2.74
98 99 4.277672 GCATTCATATCTGATGCCAACTGT 59.722 41.667 0.00 0.00 33.49 3.55
99 100 4.612939 CGCATTCATATCTGATGCCAACTG 60.613 45.833 0.00 0.00 34.85 3.16
100 101 3.501062 CGCATTCATATCTGATGCCAACT 59.499 43.478 0.00 0.00 34.85 3.16
101 102 3.365666 CCGCATTCATATCTGATGCCAAC 60.366 47.826 0.00 0.00 34.85 3.77
102 103 2.815503 CCGCATTCATATCTGATGCCAA 59.184 45.455 0.00 0.00 34.85 4.52
103 104 2.224597 ACCGCATTCATATCTGATGCCA 60.225 45.455 0.00 0.00 34.85 4.92
104 105 2.430465 ACCGCATTCATATCTGATGCC 58.570 47.619 0.00 0.00 34.85 4.40
105 106 4.093998 CCTTACCGCATTCATATCTGATGC 59.906 45.833 0.00 0.00 34.92 3.91
106 107 4.633126 CCCTTACCGCATTCATATCTGATG 59.367 45.833 0.00 0.00 0.00 3.07
107 108 4.287067 ACCCTTACCGCATTCATATCTGAT 59.713 41.667 0.00 0.00 0.00 2.90
108 109 3.646162 ACCCTTACCGCATTCATATCTGA 59.354 43.478 0.00 0.00 0.00 3.27
109 110 4.008074 ACCCTTACCGCATTCATATCTG 57.992 45.455 0.00 0.00 0.00 2.90
110 111 4.102524 TGAACCCTTACCGCATTCATATCT 59.897 41.667 0.00 0.00 0.00 1.98
111 112 4.385825 TGAACCCTTACCGCATTCATATC 58.614 43.478 0.00 0.00 0.00 1.63
112 113 4.431416 TGAACCCTTACCGCATTCATAT 57.569 40.909 0.00 0.00 0.00 1.78
113 114 3.916359 TGAACCCTTACCGCATTCATA 57.084 42.857 0.00 0.00 0.00 2.15
114 115 2.799126 TGAACCCTTACCGCATTCAT 57.201 45.000 0.00 0.00 0.00 2.57
115 116 2.290641 ACATGAACCCTTACCGCATTCA 60.291 45.455 0.00 0.00 34.03 2.57
116 117 2.097466 CACATGAACCCTTACCGCATTC 59.903 50.000 0.00 0.00 0.00 2.67
117 118 2.091541 CACATGAACCCTTACCGCATT 58.908 47.619 0.00 0.00 0.00 3.56
118 119 1.681780 CCACATGAACCCTTACCGCAT 60.682 52.381 0.00 0.00 0.00 4.73
119 120 0.322098 CCACATGAACCCTTACCGCA 60.322 55.000 0.00 0.00 0.00 5.69
120 121 0.035820 TCCACATGAACCCTTACCGC 60.036 55.000 0.00 0.00 0.00 5.68
121 122 1.278127 ACTCCACATGAACCCTTACCG 59.722 52.381 0.00 0.00 0.00 4.02
122 123 3.081804 CAACTCCACATGAACCCTTACC 58.918 50.000 0.00 0.00 0.00 2.85
123 124 3.081804 CCAACTCCACATGAACCCTTAC 58.918 50.000 0.00 0.00 0.00 2.34
124 125 2.983192 TCCAACTCCACATGAACCCTTA 59.017 45.455 0.00 0.00 0.00 2.69
125 126 1.780309 TCCAACTCCACATGAACCCTT 59.220 47.619 0.00 0.00 0.00 3.95
126 127 1.444933 TCCAACTCCACATGAACCCT 58.555 50.000 0.00 0.00 0.00 4.34
127 128 2.514458 ATCCAACTCCACATGAACCC 57.486 50.000 0.00 0.00 0.00 4.11
128 129 2.945668 GCTATCCAACTCCACATGAACC 59.054 50.000 0.00 0.00 0.00 3.62
129 130 2.945668 GGCTATCCAACTCCACATGAAC 59.054 50.000 0.00 0.00 0.00 3.18
130 131 2.575735 TGGCTATCCAACTCCACATGAA 59.424 45.455 0.00 0.00 39.99 2.57
131 132 2.195727 TGGCTATCCAACTCCACATGA 58.804 47.619 0.00 0.00 39.99 3.07
132 133 2.715749 TGGCTATCCAACTCCACATG 57.284 50.000 0.00 0.00 39.99 3.21
150 151 3.725895 CGAATCATCTTCACCAGCGTTTG 60.726 47.826 0.00 0.00 0.00 2.93
151 152 2.416547 CGAATCATCTTCACCAGCGTTT 59.583 45.455 0.00 0.00 0.00 3.60
152 153 2.002586 CGAATCATCTTCACCAGCGTT 58.997 47.619 0.00 0.00 0.00 4.84
153 154 1.645034 CGAATCATCTTCACCAGCGT 58.355 50.000 0.00 0.00 0.00 5.07
154 155 0.302890 GCGAATCATCTTCACCAGCG 59.697 55.000 0.00 0.00 0.00 5.18
155 156 0.659957 GGCGAATCATCTTCACCAGC 59.340 55.000 0.00 0.00 0.00 4.85
156 157 2.028420 TGGCGAATCATCTTCACCAG 57.972 50.000 0.00 0.00 0.00 4.00
157 158 2.027285 TCTTGGCGAATCATCTTCACCA 60.027 45.455 0.00 0.00 0.00 4.17
158 159 2.611292 CTCTTGGCGAATCATCTTCACC 59.389 50.000 0.00 0.00 0.00 4.02
159 160 2.611292 CCTCTTGGCGAATCATCTTCAC 59.389 50.000 0.00 0.00 0.00 3.18
160 161 2.501316 TCCTCTTGGCGAATCATCTTCA 59.499 45.455 0.00 0.00 0.00 3.02
161 162 3.129871 CTCCTCTTGGCGAATCATCTTC 58.870 50.000 0.00 0.00 0.00 2.87
162 163 2.768527 TCTCCTCTTGGCGAATCATCTT 59.231 45.455 0.00 0.00 0.00 2.40
163 164 2.392662 TCTCCTCTTGGCGAATCATCT 58.607 47.619 0.00 0.00 0.00 2.90
164 165 2.898729 TCTCCTCTTGGCGAATCATC 57.101 50.000 0.00 0.00 0.00 2.92
165 166 2.158842 CCTTCTCCTCTTGGCGAATCAT 60.159 50.000 0.00 0.00 36.59 2.45
166 167 1.208052 CCTTCTCCTCTTGGCGAATCA 59.792 52.381 0.00 0.00 36.59 2.57
167 168 1.208293 ACCTTCTCCTCTTGGCGAATC 59.792 52.381 0.00 0.00 36.59 2.52
168 169 1.065854 CACCTTCTCCTCTTGGCGAAT 60.066 52.381 0.00 0.00 36.59 3.34
169 170 0.321671 CACCTTCTCCTCTTGGCGAA 59.678 55.000 0.00 0.00 35.90 4.70
170 171 0.832135 ACACCTTCTCCTCTTGGCGA 60.832 55.000 0.00 0.00 0.00 5.54
171 172 0.035458 AACACCTTCTCCTCTTGGCG 59.965 55.000 0.00 0.00 0.00 5.69
172 173 1.202818 ACAACACCTTCTCCTCTTGGC 60.203 52.381 0.00 0.00 0.00 4.52
173 174 2.551071 GGACAACACCTTCTCCTCTTGG 60.551 54.545 0.00 0.00 0.00 3.61
174 175 2.772287 GGACAACACCTTCTCCTCTTG 58.228 52.381 0.00 0.00 0.00 3.02
175 176 1.344763 CGGACAACACCTTCTCCTCTT 59.655 52.381 0.00 0.00 0.00 2.85
176 177 0.969894 CGGACAACACCTTCTCCTCT 59.030 55.000 0.00 0.00 0.00 3.69
177 178 0.670854 GCGGACAACACCTTCTCCTC 60.671 60.000 0.00 0.00 0.00 3.71
178 179 1.122019 AGCGGACAACACCTTCTCCT 61.122 55.000 0.00 0.00 0.00 3.69
179 180 0.951040 CAGCGGACAACACCTTCTCC 60.951 60.000 0.00 0.00 0.00 3.71
180 181 0.249911 ACAGCGGACAACACCTTCTC 60.250 55.000 0.00 0.00 0.00 2.87
181 182 0.180406 AACAGCGGACAACACCTTCT 59.820 50.000 0.00 0.00 0.00 2.85
182 183 0.307760 CAACAGCGGACAACACCTTC 59.692 55.000 0.00 0.00 0.00 3.46
183 184 1.101049 CCAACAGCGGACAACACCTT 61.101 55.000 0.00 0.00 0.00 3.50
184 185 1.525995 CCAACAGCGGACAACACCT 60.526 57.895 0.00 0.00 0.00 4.00
185 186 1.782028 GACCAACAGCGGACAACACC 61.782 60.000 0.00 0.00 0.00 4.16
186 187 1.647084 GACCAACAGCGGACAACAC 59.353 57.895 0.00 0.00 0.00 3.32
187 188 1.525077 GGACCAACAGCGGACAACA 60.525 57.895 0.00 0.00 0.00 3.33
188 189 2.258726 GGGACCAACAGCGGACAAC 61.259 63.158 0.00 0.00 0.00 3.32
189 190 2.112297 GGGACCAACAGCGGACAA 59.888 61.111 0.00 0.00 0.00 3.18
190 191 2.847234 AGGGACCAACAGCGGACA 60.847 61.111 0.00 0.00 0.00 4.02
191 192 2.358737 CAGGGACCAACAGCGGAC 60.359 66.667 0.00 0.00 0.00 4.79
192 193 3.636231 CCAGGGACCAACAGCGGA 61.636 66.667 0.00 0.00 0.00 5.54
193 194 2.484287 AATCCAGGGACCAACAGCGG 62.484 60.000 0.00 0.00 0.00 5.52
194 195 1.002134 AATCCAGGGACCAACAGCG 60.002 57.895 0.00 0.00 0.00 5.18
195 196 0.038166 TGAATCCAGGGACCAACAGC 59.962 55.000 0.00 0.00 0.00 4.40
196 197 2.119801 CTGAATCCAGGGACCAACAG 57.880 55.000 0.00 0.00 36.77 3.16
206 207 6.460676 GCATGTCCTTAATTTCCTGAATCCAG 60.461 42.308 0.00 0.00 40.09 3.86
207 208 5.360714 GCATGTCCTTAATTTCCTGAATCCA 59.639 40.000 0.00 0.00 0.00 3.41
208 209 5.595952 AGCATGTCCTTAATTTCCTGAATCC 59.404 40.000 0.00 0.00 0.00 3.01
209 210 6.319658 TGAGCATGTCCTTAATTTCCTGAATC 59.680 38.462 0.00 0.00 0.00 2.52
210 211 6.189859 TGAGCATGTCCTTAATTTCCTGAAT 58.810 36.000 0.00 0.00 0.00 2.57
211 212 5.569355 TGAGCATGTCCTTAATTTCCTGAA 58.431 37.500 0.00 0.00 0.00 3.02
212 213 5.178096 TGAGCATGTCCTTAATTTCCTGA 57.822 39.130 0.00 0.00 0.00 3.86
213 214 5.416952 AGTTGAGCATGTCCTTAATTTCCTG 59.583 40.000 0.00 0.00 0.00 3.86
214 215 5.574188 AGTTGAGCATGTCCTTAATTTCCT 58.426 37.500 0.00 0.00 0.00 3.36
215 216 5.447818 CGAGTTGAGCATGTCCTTAATTTCC 60.448 44.000 0.00 0.00 0.00 3.13
216 217 5.122396 ACGAGTTGAGCATGTCCTTAATTTC 59.878 40.000 0.00 0.00 0.00 2.17
217 218 5.003804 ACGAGTTGAGCATGTCCTTAATTT 58.996 37.500 0.00 0.00 0.00 1.82
218 219 4.579869 ACGAGTTGAGCATGTCCTTAATT 58.420 39.130 0.00 0.00 0.00 1.40
219 220 4.207891 ACGAGTTGAGCATGTCCTTAAT 57.792 40.909 0.00 0.00 0.00 1.40
220 221 3.678056 ACGAGTTGAGCATGTCCTTAA 57.322 42.857 0.00 0.00 0.00 1.85
221 222 3.678056 AACGAGTTGAGCATGTCCTTA 57.322 42.857 0.00 0.00 0.00 2.69
222 223 2.550830 AACGAGTTGAGCATGTCCTT 57.449 45.000 0.00 0.00 0.00 3.36
223 224 2.550830 AAACGAGTTGAGCATGTCCT 57.449 45.000 0.00 0.00 0.00 3.85
224 225 3.064207 TGTAAACGAGTTGAGCATGTCC 58.936 45.455 0.00 0.00 0.00 4.02
225 226 3.987868 TCTGTAAACGAGTTGAGCATGTC 59.012 43.478 0.00 0.00 0.00 3.06
226 227 3.990092 TCTGTAAACGAGTTGAGCATGT 58.010 40.909 0.00 0.00 0.00 3.21
227 228 3.990469 ACTCTGTAAACGAGTTGAGCATG 59.010 43.478 0.00 0.00 38.52 4.06
228 229 4.258702 ACTCTGTAAACGAGTTGAGCAT 57.741 40.909 0.00 0.00 38.52 3.79
229 230 3.728076 ACTCTGTAAACGAGTTGAGCA 57.272 42.857 0.00 0.00 38.52 4.26
235 236 4.667519 ACCTTGAACTCTGTAAACGAGT 57.332 40.909 0.00 0.00 43.20 4.18
236 237 4.318831 GCAACCTTGAACTCTGTAAACGAG 60.319 45.833 0.00 0.00 34.70 4.18
237 238 3.558418 GCAACCTTGAACTCTGTAAACGA 59.442 43.478 0.00 0.00 0.00 3.85
238 239 3.560068 AGCAACCTTGAACTCTGTAAACG 59.440 43.478 0.00 0.00 0.00 3.60
239 240 5.500645 AAGCAACCTTGAACTCTGTAAAC 57.499 39.130 0.00 0.00 0.00 2.01
251 252 2.162681 CTCCTAACCCAAGCAACCTTG 58.837 52.381 0.00 0.00 46.38 3.61
252 253 2.062636 TCTCCTAACCCAAGCAACCTT 58.937 47.619 0.00 0.00 0.00 3.50
253 254 1.742308 TCTCCTAACCCAAGCAACCT 58.258 50.000 0.00 0.00 0.00 3.50
254 255 2.026262 TGATCTCCTAACCCAAGCAACC 60.026 50.000 0.00 0.00 0.00 3.77
255 256 3.274288 CTGATCTCCTAACCCAAGCAAC 58.726 50.000 0.00 0.00 0.00 4.17
256 257 2.356125 GCTGATCTCCTAACCCAAGCAA 60.356 50.000 0.00 0.00 0.00 3.91
257 258 1.210478 GCTGATCTCCTAACCCAAGCA 59.790 52.381 0.00 0.00 0.00 3.91
258 259 1.475930 GGCTGATCTCCTAACCCAAGC 60.476 57.143 0.00 0.00 0.00 4.01
259 260 1.839994 TGGCTGATCTCCTAACCCAAG 59.160 52.381 0.00 0.00 0.00 3.61
260 261 1.965414 TGGCTGATCTCCTAACCCAA 58.035 50.000 0.00 0.00 0.00 4.12
261 262 1.965414 TTGGCTGATCTCCTAACCCA 58.035 50.000 0.00 0.00 0.00 4.51
262 263 2.173569 ACATTGGCTGATCTCCTAACCC 59.826 50.000 0.00 0.00 0.00 4.11
263 264 3.471680 GACATTGGCTGATCTCCTAACC 58.528 50.000 0.00 0.00 0.00 2.85
264 265 3.126831 CGACATTGGCTGATCTCCTAAC 58.873 50.000 0.00 0.00 0.00 2.34
265 266 2.483714 GCGACATTGGCTGATCTCCTAA 60.484 50.000 0.00 0.00 0.00 2.69
266 267 1.069204 GCGACATTGGCTGATCTCCTA 59.931 52.381 0.00 0.00 0.00 2.94
267 268 0.179062 GCGACATTGGCTGATCTCCT 60.179 55.000 0.00 0.00 0.00 3.69
268 269 0.462581 TGCGACATTGGCTGATCTCC 60.463 55.000 0.00 0.00 0.00 3.71
269 270 0.935898 CTGCGACATTGGCTGATCTC 59.064 55.000 0.00 0.00 0.00 2.75
270 271 1.094073 GCTGCGACATTGGCTGATCT 61.094 55.000 0.00 0.00 0.00 2.75
271 272 1.354506 GCTGCGACATTGGCTGATC 59.645 57.895 0.00 0.00 0.00 2.92
272 273 1.377594 TGCTGCGACATTGGCTGAT 60.378 52.632 0.00 0.00 0.00 2.90
273 274 2.032376 TGCTGCGACATTGGCTGA 59.968 55.556 0.00 0.00 0.00 4.26
274 275 2.177531 GTGCTGCGACATTGGCTG 59.822 61.111 0.00 0.00 0.00 4.85
275 276 2.281692 TGTGCTGCGACATTGGCT 60.282 55.556 0.00 0.00 0.00 4.75
276 277 2.126734 GTGTGCTGCGACATTGGC 60.127 61.111 7.88 0.00 0.00 4.52
277 278 0.386352 CTTGTGTGCTGCGACATTGG 60.386 55.000 5.29 0.00 0.00 3.16
278 279 1.000233 GCTTGTGTGCTGCGACATTG 61.000 55.000 5.29 3.86 0.00 2.82
279 280 1.168407 AGCTTGTGTGCTGCGACATT 61.168 50.000 5.29 0.00 42.33 2.71
280 281 1.168407 AAGCTTGTGTGCTGCGACAT 61.168 50.000 0.00 0.00 43.24 3.06
281 282 1.819208 AAGCTTGTGTGCTGCGACA 60.819 52.632 0.00 0.58 43.24 4.35
282 283 1.369689 CAAGCTTGTGTGCTGCGAC 60.370 57.895 18.65 0.00 43.24 5.19
283 284 3.024784 CAAGCTTGTGTGCTGCGA 58.975 55.556 18.65 0.00 43.24 5.10
284 285 2.728383 GCAAGCTTGTGTGCTGCG 60.728 61.111 26.55 0.00 43.24 5.18
288 289 1.517242 ACTCTAGCAAGCTTGTGTGC 58.483 50.000 26.55 14.06 41.22 4.57
289 290 3.257393 CCTACTCTAGCAAGCTTGTGTG 58.743 50.000 26.55 18.40 30.87 3.82
290 291 2.234908 CCCTACTCTAGCAAGCTTGTGT 59.765 50.000 26.55 16.89 32.42 3.72
291 292 2.419297 CCCCTACTCTAGCAAGCTTGTG 60.419 54.545 26.55 16.86 0.00 3.33
292 293 1.834263 CCCCTACTCTAGCAAGCTTGT 59.166 52.381 26.55 15.87 0.00 3.16
293 294 1.834263 ACCCCTACTCTAGCAAGCTTG 59.166 52.381 22.44 22.44 0.00 4.01
294 295 2.255770 ACCCCTACTCTAGCAAGCTT 57.744 50.000 0.00 0.00 0.00 3.74
295 296 2.425102 CCTACCCCTACTCTAGCAAGCT 60.425 54.545 0.00 0.00 0.00 3.74
296 297 1.964933 CCTACCCCTACTCTAGCAAGC 59.035 57.143 0.00 0.00 0.00 4.01
297 298 3.138653 TCTCCTACCCCTACTCTAGCAAG 59.861 52.174 0.00 0.00 0.00 4.01
298 299 3.128848 TCTCCTACCCCTACTCTAGCAA 58.871 50.000 0.00 0.00 0.00 3.91
299 300 2.712087 CTCTCCTACCCCTACTCTAGCA 59.288 54.545 0.00 0.00 0.00 3.49
300 301 2.040679 CCTCTCCTACCCCTACTCTAGC 59.959 59.091 0.00 0.00 0.00 3.42
301 302 3.585732 CTCCTCTCCTACCCCTACTCTAG 59.414 56.522 0.00 0.00 0.00 2.43
302 303 3.211697 TCTCCTCTCCTACCCCTACTCTA 59.788 52.174 0.00 0.00 0.00 2.43
303 304 2.020842 TCTCCTCTCCTACCCCTACTCT 60.021 54.545 0.00 0.00 0.00 3.24
304 305 2.374170 CTCTCCTCTCCTACCCCTACTC 59.626 59.091 0.00 0.00 0.00 2.59
305 306 2.020842 TCTCTCCTCTCCTACCCCTACT 60.021 54.545 0.00 0.00 0.00 2.57
306 307 2.420705 TCTCTCCTCTCCTACCCCTAC 58.579 57.143 0.00 0.00 0.00 3.18
307 308 2.912459 TCTCTCCTCTCCTACCCCTA 57.088 55.000 0.00 0.00 0.00 3.53
308 309 2.070573 GATCTCTCCTCTCCTACCCCT 58.929 57.143 0.00 0.00 0.00 4.79
309 310 1.783979 TGATCTCTCCTCTCCTACCCC 59.216 57.143 0.00 0.00 0.00 4.95
310 311 2.714250 TCTGATCTCTCCTCTCCTACCC 59.286 54.545 0.00 0.00 0.00 3.69
311 312 3.394606 ACTCTGATCTCTCCTCTCCTACC 59.605 52.174 0.00 0.00 0.00 3.18
312 313 4.348168 AGACTCTGATCTCTCCTCTCCTAC 59.652 50.000 0.00 0.00 0.00 3.18
313 314 4.566837 AGACTCTGATCTCTCCTCTCCTA 58.433 47.826 0.00 0.00 0.00 2.94
314 315 3.397527 AGACTCTGATCTCTCCTCTCCT 58.602 50.000 0.00 0.00 0.00 3.69
315 316 3.864789 AGACTCTGATCTCTCCTCTCC 57.135 52.381 0.00 0.00 0.00 3.71
316 317 3.885297 CCAAGACTCTGATCTCTCCTCTC 59.115 52.174 0.00 0.00 0.00 3.20
317 318 3.269381 ACCAAGACTCTGATCTCTCCTCT 59.731 47.826 0.00 0.00 0.00 3.69
318 319 3.631250 ACCAAGACTCTGATCTCTCCTC 58.369 50.000 0.00 0.00 0.00 3.71
319 320 3.756082 ACCAAGACTCTGATCTCTCCT 57.244 47.619 0.00 0.00 0.00 3.69
320 321 4.221703 TGAAACCAAGACTCTGATCTCTCC 59.778 45.833 0.00 0.00 0.00 3.71
321 322 5.398603 TGAAACCAAGACTCTGATCTCTC 57.601 43.478 0.00 0.00 0.00 3.20
322 323 6.667414 AGTATGAAACCAAGACTCTGATCTCT 59.333 38.462 0.00 0.00 0.00 3.10
323 324 6.872920 AGTATGAAACCAAGACTCTGATCTC 58.127 40.000 0.00 0.00 0.00 2.75
324 325 6.127196 GGAGTATGAAACCAAGACTCTGATCT 60.127 42.308 0.00 0.00 37.33 2.75
325 326 6.045955 GGAGTATGAAACCAAGACTCTGATC 58.954 44.000 0.00 0.00 37.33 2.92
326 327 5.723887 AGGAGTATGAAACCAAGACTCTGAT 59.276 40.000 0.00 0.00 37.33 2.90
327 328 5.087323 AGGAGTATGAAACCAAGACTCTGA 58.913 41.667 0.00 0.00 37.33 3.27
328 329 5.413309 AGGAGTATGAAACCAAGACTCTG 57.587 43.478 0.00 0.00 37.33 3.35
329 330 4.468153 GGAGGAGTATGAAACCAAGACTCT 59.532 45.833 0.00 0.00 37.33 3.24
330 331 4.468153 AGGAGGAGTATGAAACCAAGACTC 59.532 45.833 0.00 0.00 36.60 3.36
331 332 4.223923 CAGGAGGAGTATGAAACCAAGACT 59.776 45.833 0.00 0.00 0.00 3.24
332 333 4.223032 TCAGGAGGAGTATGAAACCAAGAC 59.777 45.833 0.00 0.00 0.00 3.01
333 334 4.425772 TCAGGAGGAGTATGAAACCAAGA 58.574 43.478 0.00 0.00 0.00 3.02
334 335 4.826274 TCAGGAGGAGTATGAAACCAAG 57.174 45.455 0.00 0.00 0.00 3.61
335 336 5.779241 AATCAGGAGGAGTATGAAACCAA 57.221 39.130 0.00 0.00 0.00 3.67
336 337 5.779241 AAATCAGGAGGAGTATGAAACCA 57.221 39.130 0.00 0.00 0.00 3.67
337 338 8.753497 AATAAAATCAGGAGGAGTATGAAACC 57.247 34.615 0.00 0.00 0.00 3.27
359 360 9.706691 GGAATGTCCGAGATTACAGATAAAATA 57.293 33.333 0.00 0.00 0.00 1.40
360 361 8.210946 TGGAATGTCCGAGATTACAGATAAAAT 58.789 33.333 0.00 0.00 40.17 1.82
361 362 7.561251 TGGAATGTCCGAGATTACAGATAAAA 58.439 34.615 0.00 0.00 40.17 1.52
362 363 7.119709 TGGAATGTCCGAGATTACAGATAAA 57.880 36.000 0.00 0.00 40.17 1.40
363 364 6.724893 TGGAATGTCCGAGATTACAGATAA 57.275 37.500 0.00 0.00 40.17 1.75
364 365 6.724893 TTGGAATGTCCGAGATTACAGATA 57.275 37.500 3.55 0.00 40.17 1.98
365 366 5.614324 TTGGAATGTCCGAGATTACAGAT 57.386 39.130 3.55 0.00 40.17 2.90
366 367 5.046591 AGTTTGGAATGTCCGAGATTACAGA 60.047 40.000 3.55 0.00 40.17 3.41
367 368 5.178797 AGTTTGGAATGTCCGAGATTACAG 58.821 41.667 3.55 0.00 40.17 2.74
368 369 5.160607 AGTTTGGAATGTCCGAGATTACA 57.839 39.130 0.00 0.00 40.17 2.41
369 370 6.817140 ACTAAGTTTGGAATGTCCGAGATTAC 59.183 38.462 0.00 0.00 40.17 1.89
370 371 6.942976 ACTAAGTTTGGAATGTCCGAGATTA 58.057 36.000 0.00 0.00 40.17 1.75
371 372 5.805728 ACTAAGTTTGGAATGTCCGAGATT 58.194 37.500 0.00 0.00 40.17 2.40
372 373 5.046591 TGACTAAGTTTGGAATGTCCGAGAT 60.047 40.000 0.00 0.00 40.17 2.75
373 374 4.282449 TGACTAAGTTTGGAATGTCCGAGA 59.718 41.667 0.00 0.00 40.17 4.04
374 375 4.566004 TGACTAAGTTTGGAATGTCCGAG 58.434 43.478 0.00 0.00 40.17 4.63
375 376 4.610605 TGACTAAGTTTGGAATGTCCGA 57.389 40.909 0.00 0.00 40.17 4.55
376 377 5.880054 ATTGACTAAGTTTGGAATGTCCG 57.120 39.130 0.00 0.00 40.17 4.79
377 378 7.755373 GCTTTATTGACTAAGTTTGGAATGTCC 59.245 37.037 0.00 0.00 36.96 4.02
378 379 8.296713 TGCTTTATTGACTAAGTTTGGAATGTC 58.703 33.333 0.00 0.00 0.00 3.06
379 380 8.177119 TGCTTTATTGACTAAGTTTGGAATGT 57.823 30.769 0.00 0.00 0.00 2.71
380 381 7.274250 GCTGCTTTATTGACTAAGTTTGGAATG 59.726 37.037 0.00 0.00 0.00 2.67
381 382 7.315890 GCTGCTTTATTGACTAAGTTTGGAAT 58.684 34.615 0.00 0.00 0.00 3.01
382 383 6.567701 CGCTGCTTTATTGACTAAGTTTGGAA 60.568 38.462 0.00 0.00 0.00 3.53
383 384 5.106712 CGCTGCTTTATTGACTAAGTTTGGA 60.107 40.000 0.00 0.00 0.00 3.53
384 385 5.088739 CGCTGCTTTATTGACTAAGTTTGG 58.911 41.667 0.00 0.00 0.00 3.28
385 386 5.088739 CCGCTGCTTTATTGACTAAGTTTG 58.911 41.667 0.00 0.00 0.00 2.93
386 387 4.379499 GCCGCTGCTTTATTGACTAAGTTT 60.379 41.667 0.00 0.00 33.53 2.66
387 388 3.127030 GCCGCTGCTTTATTGACTAAGTT 59.873 43.478 0.00 0.00 33.53 2.66
388 389 2.678336 GCCGCTGCTTTATTGACTAAGT 59.322 45.455 0.00 0.00 33.53 2.24
389 390 2.677836 TGCCGCTGCTTTATTGACTAAG 59.322 45.455 0.70 0.00 38.71 2.18
390 391 2.705730 TGCCGCTGCTTTATTGACTAA 58.294 42.857 0.70 0.00 38.71 2.24
391 392 2.394930 TGCCGCTGCTTTATTGACTA 57.605 45.000 0.70 0.00 38.71 2.59
392 393 1.470098 CTTGCCGCTGCTTTATTGACT 59.530 47.619 0.70 0.00 38.71 3.41
393 394 1.200020 ACTTGCCGCTGCTTTATTGAC 59.800 47.619 0.70 0.00 38.71 3.18
394 395 1.533625 ACTTGCCGCTGCTTTATTGA 58.466 45.000 0.70 0.00 38.71 2.57
395 396 1.987770 CAACTTGCCGCTGCTTTATTG 59.012 47.619 0.70 0.00 38.71 1.90
396 397 1.613437 ACAACTTGCCGCTGCTTTATT 59.387 42.857 0.70 0.00 38.71 1.40
397 398 1.247567 ACAACTTGCCGCTGCTTTAT 58.752 45.000 0.70 0.00 38.71 1.40
398 399 1.533731 GTACAACTTGCCGCTGCTTTA 59.466 47.619 0.70 0.00 38.71 1.85
399 400 0.310854 GTACAACTTGCCGCTGCTTT 59.689 50.000 0.70 0.00 38.71 3.51
400 401 1.515521 GGTACAACTTGCCGCTGCTT 61.516 55.000 0.70 0.00 38.71 3.91
401 402 1.966451 GGTACAACTTGCCGCTGCT 60.966 57.895 0.70 0.00 38.71 4.24
402 403 0.672401 TAGGTACAACTTGCCGCTGC 60.672 55.000 0.00 0.00 34.44 5.25
403 404 1.803334 TTAGGTACAACTTGCCGCTG 58.197 50.000 0.00 0.00 34.44 5.18
404 405 2.554370 TTTAGGTACAACTTGCCGCT 57.446 45.000 0.00 0.00 34.44 5.52
405 406 3.629438 TTTTTAGGTACAACTTGCCGC 57.371 42.857 0.00 0.00 34.44 6.53
424 425 3.670377 GTGGGAGCGCGCCTTTTT 61.670 61.111 30.33 8.95 0.00 1.94
675 683 1.598856 AAGGAGGGGGAGAGAGAGGG 61.599 65.000 0.00 0.00 0.00 4.30
896 920 2.632996 CCTATGGATTCTTGGCTCGGTA 59.367 50.000 0.00 0.00 0.00 4.02
917 941 1.646189 CTAGCTCGCCAGAAGGAAAC 58.354 55.000 0.00 0.00 36.89 2.78
1042 1066 1.202891 CCGAGGAACCAAGAAACCCTT 60.203 52.381 0.00 0.00 34.91 3.95
1276 1300 1.347707 GAGAACTCACCCATCACCACA 59.652 52.381 0.00 0.00 0.00 4.17
1336 1372 3.344137 ATCATCACCACCACCGCCC 62.344 63.158 0.00 0.00 0.00 6.13
1337 1373 2.114670 CATCATCACCACCACCGCC 61.115 63.158 0.00 0.00 0.00 6.13
1338 1374 1.078497 TCATCATCACCACCACCGC 60.078 57.895 0.00 0.00 0.00 5.68
1339 1375 0.462581 CCTCATCATCACCACCACCG 60.463 60.000 0.00 0.00 0.00 4.94
1402 1438 1.420430 TGTCCTCCCCGATGGTAATC 58.580 55.000 0.00 0.00 34.77 1.75
1554 1590 7.227314 GCATTTCATCTCCATACATAGTGTCAA 59.773 37.037 0.00 0.00 0.00 3.18
1590 1629 0.098200 CAGCACAAGATGGTCATGCG 59.902 55.000 0.00 0.00 41.23 4.73
1719 1758 4.262121 CCATCTCCATGTTGCAAGTTGAAA 60.262 41.667 7.16 0.00 0.00 2.69
1726 1765 2.288948 GCAAACCATCTCCATGTTGCAA 60.289 45.455 0.00 0.00 39.85 4.08
1754 1793 8.383318 ACAGGTAGACATGAATTAATATGTGC 57.617 34.615 8.30 2.25 37.63 4.57
1932 1974 4.393155 CCCTGCACGCTACCTGCA 62.393 66.667 0.00 0.00 42.42 4.41
2484 2528 5.295787 GTGTGGACATTGTTTGTACTTCTCA 59.704 40.000 0.00 0.00 40.17 3.27
2521 2565 3.980646 TTGAAGTTTCCACGTGAATGG 57.019 42.857 19.30 0.00 41.57 3.16
2550 2594 2.234908 GTGTGACCTGGAGAAGCTGTAT 59.765 50.000 0.00 0.00 0.00 2.29
2551 2595 1.618837 GTGTGACCTGGAGAAGCTGTA 59.381 52.381 0.00 0.00 0.00 2.74
2589 2633 4.943705 TGATTGGAGCACTAGAACCAAATC 59.056 41.667 14.42 12.84 43.91 2.17
2619 2663 4.381825 GCAATGCATTGTTCATAAGGGACA 60.382 41.667 33.67 0.00 39.88 4.02
2687 2731 4.186926 TGAACTTGCTGAGATACATGAGC 58.813 43.478 0.00 0.00 0.00 4.26
2689 2733 4.937620 GGTTGAACTTGCTGAGATACATGA 59.062 41.667 0.00 0.00 0.00 3.07
2717 2764 2.876581 ACCACTGAAAGGATTGGTTCC 58.123 47.619 0.00 0.00 37.55 3.62
2821 2868 1.630369 ACTACATTTGAGGCAGCCTGA 59.370 47.619 22.26 7.97 31.76 3.86
2893 2940 2.158475 TGGTTCTGGCAGGAATTGTCTT 60.158 45.455 15.73 0.00 30.85 3.01
2983 3030 6.058183 ACTGGTATTGTAAGCAGAATCATCC 58.942 40.000 9.79 0.00 45.70 3.51
3015 3062 1.302285 CTCACAGGCTGCTGGGAAT 59.698 57.895 15.89 0.00 36.20 3.01
3016 3063 2.752358 CTCACAGGCTGCTGGGAA 59.248 61.111 15.89 0.00 36.20 3.97
3109 3156 5.823045 CCCATTAGAAGTCATCAGGTTTACC 59.177 44.000 0.00 0.00 0.00 2.85
3295 3342 1.045911 ATCCGGAAGAGTCCCTCTGC 61.046 60.000 9.01 0.00 40.28 4.26
3439 3494 3.137533 CCTACGGACCAGCTACTAGTAC 58.862 54.545 0.00 0.00 0.00 2.73
3612 3668 6.540189 TGGAAATTCTGCTCTTCTATTACAGC 59.460 38.462 0.00 0.00 0.00 4.40
3648 3704 8.798859 ATATGGCTCATAGAAATATGACCAAC 57.201 34.615 16.38 2.56 39.11 3.77
3666 3722 4.023980 TGGCGCTAGAATAGTATATGGCT 58.976 43.478 7.64 0.00 41.93 4.75
3909 3966 4.344104 AGGAACACAATAACCAGGGAATG 58.656 43.478 0.00 0.00 0.00 2.67
3932 3989 7.676947 AGTTATTCTGCACCTAGTTAAGAACA 58.323 34.615 0.00 0.00 30.17 3.18
4059 4117 1.442769 CAACCAGGGACAGATCGTTG 58.557 55.000 0.00 0.00 0.00 4.10
4073 4131 1.766864 TTCCCAGTCGTCCCAACCA 60.767 57.895 0.00 0.00 0.00 3.67
4170 6263 2.440501 GGAAACATGCGAACAATAGCG 58.559 47.619 0.00 0.00 35.87 4.26
4189 6282 4.536364 ATCAATTACAAGAATCGCACGG 57.464 40.909 0.00 0.00 0.00 4.94
4193 6286 5.560953 GCAGGGTATCAATTACAAGAATCGC 60.561 44.000 0.00 0.00 31.99 4.58
4306 6488 0.250295 TGCCTTCAGTCCTCGGTTTG 60.250 55.000 0.00 0.00 0.00 2.93
4351 6533 2.749621 GGCCACTTTCTGACGATTTCAT 59.250 45.455 0.00 0.00 32.17 2.57
4356 6538 2.489329 CAATTGGCCACTTTCTGACGAT 59.511 45.455 3.88 0.00 0.00 3.73
4358 6540 1.608590 ACAATTGGCCACTTTCTGACG 59.391 47.619 3.88 0.00 0.00 4.35
4375 6557 8.786826 AATTTGGTCACTATATCTCGAAACAA 57.213 30.769 0.00 0.00 0.00 2.83
4377 6559 8.649973 AGAATTTGGTCACTATATCTCGAAAC 57.350 34.615 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.