Multiple sequence alignment - TraesCS1D01G145400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G145400 chr1D 100.000 7442 0 0 1 7442 200870102 200877543 0.000000e+00 13743.0
1 TraesCS1D01G145400 chr1D 96.847 222 6 1 3429 3649 254602912 254603133 3.280000e-98 370.0
2 TraesCS1D01G145400 chr1D 94.421 233 13 0 2540 2772 204028854 204028622 7.100000e-95 359.0
3 TraesCS1D01G145400 chr1D 77.749 382 49 23 3822 4183 135932051 135932416 1.270000e-47 202.0
4 TraesCS1D01G145400 chr1D 85.799 169 24 0 2020 2188 332997343 332997175 5.930000e-41 180.0
5 TraesCS1D01G145400 chr1D 100.000 38 0 0 5630 5667 200874283 200874320 3.730000e-08 71.3
6 TraesCS1D01G145400 chr1D 100.000 38 0 0 4182 4219 200875731 200875768 3.730000e-08 71.3
7 TraesCS1D01G145400 chr1A 92.381 2717 98 37 4217 6923 254380655 254383272 0.000000e+00 3770.0
8 TraesCS1D01G145400 chr1A 92.899 845 30 9 767 1588 254375207 254376044 0.000000e+00 1201.0
9 TraesCS1D01G145400 chr1A 93.405 561 15 4 6882 7442 254383313 254383851 0.000000e+00 811.0
10 TraesCS1D01G145400 chr1A 94.560 386 14 3 3802 4185 254380273 254380653 2.310000e-164 590.0
11 TraesCS1D01G145400 chr1A 85.439 570 45 16 2774 3342 254377212 254377744 6.520000e-155 558.0
12 TraesCS1D01G145400 chr1A 80.204 783 111 28 1 775 254352474 254353220 1.410000e-151 547.0
13 TraesCS1D01G145400 chr1A 97.273 220 6 0 3424 3643 326200809 326201028 2.540000e-99 374.0
14 TraesCS1D01G145400 chr1A 83.989 356 49 5 2187 2538 254376877 254377228 1.200000e-87 335.0
15 TraesCS1D01G145400 chr1A 89.868 227 20 3 3424 3649 61386627 61386403 9.450000e-74 289.0
16 TraesCS1D01G145400 chr1A 96.875 96 3 0 3640 3735 254380180 254380275 2.150000e-35 161.0
17 TraesCS1D01G145400 chr1A 93.671 79 5 0 3353 3431 254380123 254380201 1.310000e-22 119.0
18 TraesCS1D01G145400 chr1A 97.619 42 1 0 6882 6923 254383272 254383313 1.040000e-08 73.1
19 TraesCS1D01G145400 chr1A 100.000 38 0 0 4182 4219 254382027 254382064 3.730000e-08 71.3
20 TraesCS1D01G145400 chr1A 93.182 44 3 0 477 520 254352877 254352920 1.730000e-06 65.8
21 TraesCS1D01G145400 chr1B 97.397 1652 33 7 4421 6069 288803747 288805391 0.000000e+00 2804.0
22 TraesCS1D01G145400 chr1B 95.324 1048 27 4 3139 4185 288802232 288803258 0.000000e+00 1644.0
23 TraesCS1D01G145400 chr1B 93.466 903 43 8 6077 6972 288805480 288806373 0.000000e+00 1327.0
24 TraesCS1D01G145400 chr1B 90.307 1011 37 16 783 1759 288799911 288800894 0.000000e+00 1267.0
25 TraesCS1D01G145400 chr1B 86.207 783 69 17 1774 2545 288801051 288801805 0.000000e+00 811.0
26 TraesCS1D01G145400 chr1B 85.309 810 68 17 1 786 288798413 288799195 0.000000e+00 789.0
27 TraesCS1D01G145400 chr1B 89.764 508 9 5 6962 7442 288808373 288808864 1.780000e-170 610.0
28 TraesCS1D01G145400 chr1B 93.151 365 22 3 2776 3137 288801785 288802149 3.950000e-147 532.0
29 TraesCS1D01G145400 chr1B 95.215 209 6 2 4217 4425 288803260 288803464 2.000000e-85 327.0
30 TraesCS1D01G145400 chr1B 90.129 233 23 0 2540 2772 658622962 658623194 3.370000e-78 303.0
31 TraesCS1D01G145400 chr1B 100.000 38 0 0 4182 4219 288804952 288804989 3.730000e-08 71.3
32 TraesCS1D01G145400 chr6D 94.372 231 13 0 2540 2770 19720811 19721041 9.180000e-94 355.0
33 TraesCS1D01G145400 chr6D 94.083 169 9 1 2606 2773 59340284 59340452 9.580000e-64 255.0
34 TraesCS1D01G145400 chr6D 93.750 128 8 0 2540 2667 18509435 18509562 7.620000e-45 193.0
35 TraesCS1D01G145400 chr6D 76.702 382 53 23 3822 4183 225780253 225780618 5.930000e-41 180.0
36 TraesCS1D01G145400 chr6D 82.609 161 16 2 3648 3808 225780117 225780265 1.680000e-26 132.0
37 TraesCS1D01G145400 chr2A 92.593 243 17 1 2540 2782 672620961 672620720 1.540000e-91 348.0
38 TraesCS1D01G145400 chr2A 87.952 166 17 3 2025 2189 696850715 696850878 7.620000e-45 193.0
39 TraesCS1D01G145400 chr2A 77.419 155 24 5 2187 2341 115138411 115138554 1.720000e-11 82.4
40 TraesCS1D01G145400 chr6A 92.017 238 14 2 2538 2771 19739029 19739265 5.570000e-86 329.0
41 TraesCS1D01G145400 chr6A 86.826 167 12 7 4021 4183 617333179 617333019 2.130000e-40 178.0
42 TraesCS1D01G145400 chr6A 82.716 162 15 6 3648 3808 617333527 617333378 1.680000e-26 132.0
43 TraesCS1D01G145400 chr6B 87.179 234 23 7 3419 3649 699802159 699802388 7.410000e-65 259.0
44 TraesCS1D01G145400 chr6B 87.611 226 22 6 3419 3643 699881678 699881898 2.660000e-64 257.0
45 TraesCS1D01G145400 chr6B 87.611 226 23 5 3419 3643 699931946 699932167 2.660000e-64 257.0
46 TraesCS1D01G145400 chr6B 87.225 227 23 6 3419 3643 699841772 699841994 3.450000e-63 254.0
47 TraesCS1D01G145400 chr3B 86.638 232 27 4 3420 3649 43838480 43838709 3.450000e-63 254.0
48 TraesCS1D01G145400 chr3B 79.149 235 38 9 1783 2016 655456479 655456255 1.290000e-32 152.0
49 TraesCS1D01G145400 chr2D 91.429 175 15 0 2599 2773 627503699 627503873 2.680000e-59 241.0
50 TraesCS1D01G145400 chr3A 86.982 169 22 0 2024 2192 600921019 600920851 2.740000e-44 191.0
51 TraesCS1D01G145400 chr3A 85.165 182 14 9 4008 4183 36201295 36201469 2.760000e-39 174.0
52 TraesCS1D01G145400 chr3A 85.811 148 14 6 4037 4183 17310131 17310272 4.650000e-32 150.0
53 TraesCS1D01G145400 chr3A 82.237 152 14 3 3658 3808 36200971 36201110 1.310000e-22 119.0
54 TraesCS1D01G145400 chr5A 89.796 147 15 0 2027 2173 320214244 320214390 9.860000e-44 189.0
55 TraesCS1D01G145400 chr5A 85.632 174 22 3 2027 2200 653299601 653299431 5.930000e-41 180.0
56 TraesCS1D01G145400 chr5A 85.906 149 15 6 4037 4185 570275260 570275402 3.600000e-33 154.0
57 TraesCS1D01G145400 chr5A 97.297 37 1 0 1726 1762 366260131 366260167 6.230000e-06 63.9
58 TraesCS1D01G145400 chr5D 87.195 164 21 0 2025 2188 484305157 484304994 3.550000e-43 187.0
59 TraesCS1D01G145400 chr5D 86.047 172 22 2 2026 2197 314421989 314422158 4.590000e-42 183.0
60 TraesCS1D01G145400 chr3D 87.195 164 21 0 2025 2188 128214170 128214007 3.550000e-43 187.0
61 TraesCS1D01G145400 chr3D 97.222 36 1 0 1727 1762 24533401 24533366 2.240000e-05 62.1
62 TraesCS1D01G145400 chr7A 86.486 148 13 6 4037 4183 13366455 13366596 1.000000e-33 156.0
63 TraesCS1D01G145400 chr7A 81.366 161 18 4 3648 3808 13366208 13366356 3.650000e-23 121.0
64 TraesCS1D01G145400 chr5B 83.851 161 14 2 3648 3808 100346109 100346257 7.780000e-30 143.0
65 TraesCS1D01G145400 chr5B 83.230 161 15 4 3648 3808 455216319 455216171 3.620000e-28 137.0
66 TraesCS1D01G145400 chr4D 84.106 151 12 2 3658 3808 73468952 73468814 1.300000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G145400 chr1D 200870102 200877543 7441 False 4628.533333 13743 100.0000 1 7442 3 chr1D.!!$F3 7441
1 TraesCS1D01G145400 chr1A 254375207 254383851 8644 False 768.940000 3770 93.0838 767 7442 10 chr1A.!!$F3 6675
2 TraesCS1D01G145400 chr1A 254352474 254353220 746 False 306.400000 547 86.6930 1 775 2 chr1A.!!$F2 774
3 TraesCS1D01G145400 chr1B 288798413 288808864 10451 False 1018.230000 2804 92.6140 1 7442 10 chr1B.!!$F2 7441


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 468 0.181350 GAGGCCTATGGTGACCCTTG 59.819 60.000 4.42 0.00 0.00 3.61 F
1387 2214 0.042731 TTGCCTGCCTACCTAGACCT 59.957 55.000 0.00 0.00 0.00 3.85 F
2285 3460 0.030773 GCATATCCTCGAGCACGTCA 59.969 55.000 6.99 0.00 40.69 4.35 F
2677 3852 0.034896 CCCTCGTACTGCTGTTTGGT 59.965 55.000 0.09 0.00 0.00 3.67 F
2682 3857 0.040425 GTACTGCTGTTTGGTTGCGG 60.040 55.000 0.09 0.00 38.86 5.69 F
2683 3858 0.179043 TACTGCTGTTTGGTTGCGGA 60.179 50.000 0.09 0.00 36.92 5.54 F
2685 3860 0.594796 CTGCTGTTTGGTTGCGGAAC 60.595 55.000 11.85 11.85 35.28 3.62 F
3596 7224 0.784778 CAGCAACGACGAAAGGTCTC 59.215 55.000 0.00 0.00 43.79 3.36 F
4204 7835 1.203087 TCCGGTACCTTCCTGAACAGA 60.203 52.381 10.90 0.00 0.00 3.41 F
4784 8705 1.285078 GCTACCCTCCAATGGTTCCTT 59.715 52.381 0.00 0.00 37.31 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1436 2263 0.107017 CCAGGGAATGGCCACTAGTG 60.107 60.000 16.34 16.34 43.83 2.74 R
2658 3833 0.034896 ACCAAACAGCAGTACGAGGG 59.965 55.000 0.00 0.00 0.00 4.30 R
3490 7118 0.178903 TCCTGCTGGGAGGTTGTACT 60.179 55.000 10.07 0.00 39.58 2.73 R
4185 7816 1.263356 TCTGTTCAGGAAGGTACCGG 58.737 55.000 6.18 0.00 34.73 5.28 R
4267 7898 2.480416 GGCAGAGTAGACAAGATGACCG 60.480 54.545 0.00 0.00 0.00 4.79 R
4382 8013 5.049680 GTCGAAGTGCATAACAAGAAAGGAA 60.050 40.000 0.00 0.00 0.00 3.36 R
4628 8548 5.070580 AGCAGTGTACCATAACCCTATTCTC 59.929 44.000 0.00 0.00 0.00 2.87 R
5431 9353 2.016604 GCACGGGGATATTGCACAAGA 61.017 52.381 0.00 0.00 36.22 3.02 R
6192 10195 2.816601 ATCTCTGTGCACAGCCCTGC 62.817 60.000 36.76 0.31 43.46 4.85 R
6504 10507 0.679002 CTCCCATGGTGAACAGCCAG 60.679 60.000 11.73 0.00 39.65 4.85 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.348064 TTTGAGCTCGGGAGGAGAAA 58.652 50.000 9.64 0.00 46.23 2.52
46 47 5.552178 AGTACTTTCACCATTTCACTCTCC 58.448 41.667 0.00 0.00 0.00 3.71
147 148 3.581332 ACTACAGCCTGCCTAGTTTTACA 59.419 43.478 0.00 0.00 0.00 2.41
157 181 4.119862 GCCTAGTTTTACAGCATGATCGA 58.880 43.478 0.00 0.00 39.69 3.59
162 186 4.091509 AGTTTTACAGCATGATCGACGTTC 59.908 41.667 0.00 0.00 39.69 3.95
195 219 1.961394 AGTCGAGTTCTTGTGGCAGTA 59.039 47.619 0.00 0.00 0.00 2.74
204 228 2.813754 TCTTGTGGCAGTAAAGATGCAC 59.186 45.455 0.00 0.00 45.68 4.57
211 235 2.223112 GCAGTAAAGATGCACGTGGATG 60.223 50.000 28.10 13.51 43.31 3.51
246 270 4.429212 TCCGTGGGTGTCGCATCG 62.429 66.667 0.00 0.00 0.00 3.84
281 305 4.633126 GCACAATTGTCTTCTCTCTATGCA 59.367 41.667 8.48 0.00 0.00 3.96
287 311 7.608308 ATTGTCTTCTCTCTATGCAAAAGAC 57.392 36.000 0.00 6.19 41.72 3.01
288 312 6.101650 TGTCTTCTCTCTATGCAAAAGACA 57.898 37.500 10.71 10.71 46.06 3.41
298 322 3.114668 TGCAAAAGACAAGCAATGCAT 57.885 38.095 8.35 0.00 38.73 3.96
301 325 3.395639 CAAAAGACAAGCAATGCATGGT 58.604 40.909 15.06 5.80 42.88 3.55
303 327 4.870123 AAAGACAAGCAATGCATGGTAA 57.130 36.364 15.06 0.00 39.29 2.85
309 333 0.525761 GCAATGCATGGTAACGGTGT 59.474 50.000 0.00 0.00 42.51 4.16
317 341 3.618019 GCATGGTAACGGTGTAAGGAAGA 60.618 47.826 0.00 0.00 42.51 2.87
368 392 3.381590 CGACCTTCAGATAGTCATCCACA 59.618 47.826 2.24 0.00 0.00 4.17
369 393 4.688021 GACCTTCAGATAGTCATCCACAC 58.312 47.826 0.00 0.00 0.00 3.82
371 395 3.181461 CCTTCAGATAGTCATCCACACCC 60.181 52.174 0.00 0.00 0.00 4.61
373 397 2.118679 CAGATAGTCATCCACACCCCA 58.881 52.381 0.00 0.00 0.00 4.96
374 398 2.707791 CAGATAGTCATCCACACCCCAT 59.292 50.000 0.00 0.00 0.00 4.00
375 399 2.707791 AGATAGTCATCCACACCCCATG 59.292 50.000 0.00 0.00 0.00 3.66
376 400 0.546122 TAGTCATCCACACCCCATGC 59.454 55.000 0.00 0.00 0.00 4.06
377 401 1.754234 GTCATCCACACCCCATGCC 60.754 63.158 0.00 0.00 0.00 4.40
378 402 2.237229 TCATCCACACCCCATGCCA 61.237 57.895 0.00 0.00 0.00 4.92
379 403 1.075822 CATCCACACCCCATGCCAT 60.076 57.895 0.00 0.00 0.00 4.40
380 404 0.185658 CATCCACACCCCATGCCATA 59.814 55.000 0.00 0.00 0.00 2.74
381 405 0.479815 ATCCACACCCCATGCCATAG 59.520 55.000 0.00 0.00 0.00 2.23
382 406 1.829533 CCACACCCCATGCCATAGC 60.830 63.158 0.00 0.00 40.48 2.97
383 407 1.829533 CACACCCCATGCCATAGCC 60.830 63.158 0.00 0.00 38.69 3.93
384 408 2.315794 ACACCCCATGCCATAGCCA 61.316 57.895 0.00 0.00 38.69 4.75
385 409 1.154454 CACCCCATGCCATAGCCAT 59.846 57.895 0.00 0.00 38.69 4.40
386 410 0.896940 CACCCCATGCCATAGCCATC 60.897 60.000 0.00 0.00 38.69 3.51
387 411 1.304713 CCCCATGCCATAGCCATCC 60.305 63.158 0.00 0.00 38.69 3.51
388 412 1.461589 CCCATGCCATAGCCATCCA 59.538 57.895 0.00 0.00 38.69 3.41
389 413 0.896940 CCCATGCCATAGCCATCCAC 60.897 60.000 0.00 0.00 38.69 4.02
390 414 0.896940 CCATGCCATAGCCATCCACC 60.897 60.000 0.00 0.00 38.69 4.61
391 415 1.073722 ATGCCATAGCCATCCACCG 59.926 57.895 0.00 0.00 38.69 4.94
392 416 2.980233 GCCATAGCCATCCACCGC 60.980 66.667 0.00 0.00 0.00 5.68
393 417 2.666190 CCATAGCCATCCACCGCG 60.666 66.667 0.00 0.00 0.00 6.46
394 418 3.349006 CATAGCCATCCACCGCGC 61.349 66.667 0.00 0.00 0.00 6.86
395 419 4.626081 ATAGCCATCCACCGCGCC 62.626 66.667 0.00 0.00 0.00 6.53
421 445 2.045926 GCACTCCGTCATGCCCTT 60.046 61.111 0.00 0.00 35.73 3.95
436 460 1.281925 CCCTTGGTGAGGCCTATGGT 61.282 60.000 4.42 0.00 44.85 3.55
444 468 0.181350 GAGGCCTATGGTGACCCTTG 59.819 60.000 4.42 0.00 0.00 3.61
471 495 1.595382 CCCGCCAAAGCCTAGATCG 60.595 63.158 0.00 0.00 34.57 3.69
536 609 3.884774 AGGCCCTGTCGCACCAAA 61.885 61.111 0.00 0.00 0.00 3.28
568 641 2.433446 CAGGTGCCAGCCAAGAGT 59.567 61.111 0.00 0.00 0.00 3.24
633 706 4.087892 GAGCCTGCCCGAGCTTCA 62.088 66.667 0.00 0.00 40.11 3.02
651 724 2.278857 CCGACGATTCCTCTGGCG 60.279 66.667 0.00 0.00 0.00 5.69
699 772 3.766691 GTGGCGGCGTAGGAAGGA 61.767 66.667 9.37 0.00 0.00 3.36
710 783 1.065709 GTAGGAAGGATTTCACCGCCA 60.066 52.381 0.00 0.00 34.90 5.69
824 1617 2.649531 TTCCAATGGTCCGAACAGTT 57.350 45.000 0.00 0.00 0.00 3.16
831 1632 1.967779 TGGTCCGAACAGTTGAGATCA 59.032 47.619 0.00 0.00 0.00 2.92
866 1677 0.470766 AACACCTACTCGGCACCAAA 59.529 50.000 0.00 0.00 35.61 3.28
870 1681 2.726691 CTACTCGGCACCAAACGCG 61.727 63.158 3.53 3.53 0.00 6.01
872 1683 3.777925 CTCGGCACCAAACGCGAG 61.778 66.667 15.93 1.33 0.00 5.03
924 1735 0.378962 CTCTCGTCAGCTACCTTCCG 59.621 60.000 0.00 0.00 0.00 4.30
956 1774 1.372375 TCGCAAGTCGATCGCAACA 60.372 52.632 11.09 0.00 43.16 3.33
1048 1868 0.044397 GTACCTTCCCCTCCCCTCTT 59.956 60.000 0.00 0.00 0.00 2.85
1178 1998 5.080969 TCCTACACCAATTAACCTTCTCG 57.919 43.478 0.00 0.00 0.00 4.04
1245 2066 2.289945 TGAGCTTCCTTCCTCTTTGCTC 60.290 50.000 0.00 0.00 43.73 4.26
1383 2210 1.144057 CGGTTGCCTGCCTACCTAG 59.856 63.158 8.35 0.00 0.00 3.02
1384 2211 1.327690 CGGTTGCCTGCCTACCTAGA 61.328 60.000 0.00 0.00 0.00 2.43
1385 2212 0.178301 GGTTGCCTGCCTACCTAGAC 59.822 60.000 0.00 0.00 0.00 2.59
1386 2213 0.178301 GTTGCCTGCCTACCTAGACC 59.822 60.000 0.00 0.00 0.00 3.85
1387 2214 0.042731 TTGCCTGCCTACCTAGACCT 59.957 55.000 0.00 0.00 0.00 3.85
1388 2215 0.931468 TGCCTGCCTACCTAGACCTA 59.069 55.000 0.00 0.00 0.00 3.08
1418 2245 2.821366 CGAGCTGGATTTGCGGCT 60.821 61.111 4.97 4.97 37.77 5.52
1434 2261 0.541863 GGCTGGGTGTATGCTGTACT 59.458 55.000 0.00 0.00 0.00 2.73
1435 2262 1.656652 GCTGGGTGTATGCTGTACTG 58.343 55.000 0.00 0.00 0.00 2.74
1436 2263 1.656652 CTGGGTGTATGCTGTACTGC 58.343 55.000 17.07 17.07 0.00 4.40
1553 2384 0.107312 CACCAGGCTCATCTCCAAGG 60.107 60.000 0.00 0.00 0.00 3.61
1554 2385 0.548682 ACCAGGCTCATCTCCAAGGT 60.549 55.000 0.00 0.00 31.94 3.50
1555 2386 1.273838 ACCAGGCTCATCTCCAAGGTA 60.274 52.381 0.00 0.00 34.08 3.08
1594 2434 4.156008 ACCTCGTCTTGTGGCAATATTTTC 59.844 41.667 0.00 0.00 34.45 2.29
1595 2435 4.396166 CCTCGTCTTGTGGCAATATTTTCT 59.604 41.667 0.00 0.00 0.00 2.52
1599 2439 5.447818 CGTCTTGTGGCAATATTTTCTCCTC 60.448 44.000 0.00 0.00 0.00 3.71
1684 2618 8.729805 TTACCAATTCTTTCAAACATTTGCTT 57.270 26.923 0.00 0.00 38.05 3.91
1685 2619 7.018635 ACCAATTCTTTCAAACATTTGCTTG 57.981 32.000 0.00 0.00 38.05 4.01
1730 2664 6.920758 TCACATTTCAAAATAAAACACCTCCG 59.079 34.615 0.00 0.00 0.00 4.63
1745 2679 6.187727 ACACCTCCGATCCATATTAATTGT 57.812 37.500 0.00 0.00 0.00 2.71
1751 2685 4.031765 CCGATCCATATTAATTGTCGCTCG 59.968 45.833 0.00 0.00 0.00 5.03
1759 2693 8.212495 CCATATTAATTGTCGCTCGTTTAGTAC 58.788 37.037 0.00 0.00 0.00 2.73
1761 2695 7.585286 ATTAATTGTCGCTCGTTTAGTACAA 57.415 32.000 0.00 0.00 37.51 2.41
1763 2697 4.959631 TTGTCGCTCGTTTAGTACAAAG 57.040 40.909 0.00 0.00 33.20 2.77
1764 2698 3.968649 TGTCGCTCGTTTAGTACAAAGT 58.031 40.909 0.00 0.00 0.00 2.66
1765 2699 3.976942 TGTCGCTCGTTTAGTACAAAGTC 59.023 43.478 0.00 0.00 0.00 3.01
1767 2701 4.442073 GTCGCTCGTTTAGTACAAAGTCAA 59.558 41.667 0.00 0.00 0.00 3.18
1833 2987 1.792949 GTCTTGTAGTTGCACGACCAG 59.207 52.381 0.00 0.00 33.30 4.00
1881 3043 1.081277 GACCCCCTTCACCTCCTCT 59.919 63.158 0.00 0.00 0.00 3.69
1891 3055 1.380112 ACCTCCTCTACCTCGGCAC 60.380 63.158 0.00 0.00 0.00 5.01
1912 3076 5.355596 CACTTCTCATCATCTCTTGGGTAC 58.644 45.833 0.00 0.00 0.00 3.34
1975 3139 6.534793 GTGGCTTACATTTAATTGTTCCATGG 59.465 38.462 4.97 4.97 30.51 3.66
1999 3163 1.400629 CGGCCGCATCATCATTCATTC 60.401 52.381 14.67 0.00 0.00 2.67
2016 3180 3.186409 TCATTCGCTCACTACAAAAGCAC 59.814 43.478 0.00 0.00 35.76 4.40
2073 3245 8.539117 AAACCCTTTTAGAGATTCCAATATGG 57.461 34.615 0.00 0.00 39.43 2.74
2097 3269 7.611467 TGGAATACATACAGAGCAAAATGAGTT 59.389 33.333 0.00 0.00 0.00 3.01
2108 3280 7.138692 GAGCAAAATGAGTTGATCTACACTT 57.861 36.000 9.96 0.00 40.08 3.16
2110 3282 7.365741 AGCAAAATGAGTTGATCTACACTTTG 58.634 34.615 9.96 11.04 0.00 2.77
2200 3372 3.997021 GGGTGGAGTAGCAATCAATATCG 59.003 47.826 0.00 0.00 0.00 2.92
2239 3413 3.156511 TGAGCAATTGCAACAAAACGA 57.843 38.095 30.89 6.17 45.16 3.85
2285 3460 0.030773 GCATATCCTCGAGCACGTCA 59.969 55.000 6.99 0.00 40.69 4.35
2288 3463 2.048312 TATCCTCGAGCACGTCAGCG 62.048 60.000 6.99 0.00 44.93 5.18
2300 3475 1.062845 GTCAGCGTCGCTCCTAGTC 59.937 63.158 18.76 0.00 36.40 2.59
2325 3500 4.621510 CGTCTGAATCCATGTCTTCTTCCA 60.622 45.833 0.00 0.00 0.00 3.53
2361 3536 2.509336 GTGTCGGCGCTACTGCAT 60.509 61.111 7.64 0.00 39.64 3.96
2408 3583 3.950794 TTCGTCCTGGCCGTCATGC 62.951 63.158 0.00 0.00 0.00 4.06
2475 3650 0.540454 GACAAGGGTAGTAGGGTGGC 59.460 60.000 0.00 0.00 0.00 5.01
2522 3697 1.867919 CGGTGACCAAGAGCTCTCGT 61.868 60.000 18.55 16.20 34.09 4.18
2525 3700 2.029290 GGTGACCAAGAGCTCTCGTTAA 60.029 50.000 18.55 6.44 34.09 2.01
2526 3701 2.987821 GTGACCAAGAGCTCTCGTTAAC 59.012 50.000 18.55 13.92 34.09 2.01
2527 3702 2.251893 GACCAAGAGCTCTCGTTAACG 58.748 52.381 21.85 21.85 41.45 3.18
2528 3703 1.612463 ACCAAGAGCTCTCGTTAACGT 59.388 47.619 25.98 7.84 40.80 3.99
2529 3704 2.035576 ACCAAGAGCTCTCGTTAACGTT 59.964 45.455 25.98 5.88 40.80 3.99
2530 3705 2.662156 CCAAGAGCTCTCGTTAACGTTC 59.338 50.000 25.98 16.21 40.80 3.95
2531 3706 3.566523 CAAGAGCTCTCGTTAACGTTCT 58.433 45.455 25.98 17.68 40.80 3.01
2532 3707 3.919223 AGAGCTCTCGTTAACGTTCTT 57.081 42.857 25.98 10.51 40.80 2.52
2533 3708 3.824151 AGAGCTCTCGTTAACGTTCTTC 58.176 45.455 25.98 17.40 40.80 2.87
2534 3709 2.916089 GAGCTCTCGTTAACGTTCTTCC 59.084 50.000 25.98 11.68 40.80 3.46
2535 3710 1.991264 GCTCTCGTTAACGTTCTTCCC 59.009 52.381 25.98 7.29 40.80 3.97
2536 3711 2.352519 GCTCTCGTTAACGTTCTTCCCT 60.353 50.000 25.98 0.00 40.80 4.20
2537 3712 3.860002 GCTCTCGTTAACGTTCTTCCCTT 60.860 47.826 25.98 0.00 40.80 3.95
2538 3713 3.645884 TCTCGTTAACGTTCTTCCCTTG 58.354 45.455 25.98 6.48 40.80 3.61
2539 3714 2.735134 CTCGTTAACGTTCTTCCCTTGG 59.265 50.000 25.98 0.00 40.80 3.61
2540 3715 1.196127 CGTTAACGTTCTTCCCTTGGC 59.804 52.381 19.75 0.00 34.11 4.52
2541 3716 2.223745 GTTAACGTTCTTCCCTTGGCA 58.776 47.619 2.82 0.00 0.00 4.92
2542 3717 2.178912 TAACGTTCTTCCCTTGGCAG 57.821 50.000 2.82 0.00 0.00 4.85
2543 3718 1.172812 AACGTTCTTCCCTTGGCAGC 61.173 55.000 0.00 0.00 0.00 5.25
2544 3719 1.302832 CGTTCTTCCCTTGGCAGCT 60.303 57.895 0.00 0.00 0.00 4.24
2545 3720 1.301677 CGTTCTTCCCTTGGCAGCTC 61.302 60.000 0.00 0.00 0.00 4.09
2546 3721 0.037447 GTTCTTCCCTTGGCAGCTCT 59.963 55.000 0.00 0.00 0.00 4.09
2547 3722 1.279271 GTTCTTCCCTTGGCAGCTCTA 59.721 52.381 0.00 0.00 0.00 2.43
2548 3723 1.198713 TCTTCCCTTGGCAGCTCTAG 58.801 55.000 0.00 0.00 0.00 2.43
2549 3724 0.908198 CTTCCCTTGGCAGCTCTAGT 59.092 55.000 0.00 0.00 0.00 2.57
2550 3725 1.280421 CTTCCCTTGGCAGCTCTAGTT 59.720 52.381 0.00 0.00 0.00 2.24
2551 3726 0.615331 TCCCTTGGCAGCTCTAGTTG 59.385 55.000 0.00 0.00 0.00 3.16
2552 3727 0.393537 CCCTTGGCAGCTCTAGTTGG 60.394 60.000 0.00 0.00 0.00 3.77
2555 3730 2.579201 GGCAGCTCTAGTTGGCGA 59.421 61.111 4.70 0.00 41.33 5.54
2556 3731 1.520342 GGCAGCTCTAGTTGGCGAG 60.520 63.158 4.70 0.00 41.33 5.03
2557 3732 1.513158 GCAGCTCTAGTTGGCGAGA 59.487 57.895 0.00 0.00 0.00 4.04
2558 3733 0.103937 GCAGCTCTAGTTGGCGAGAT 59.896 55.000 0.00 0.00 0.00 2.75
2559 3734 1.338337 GCAGCTCTAGTTGGCGAGATA 59.662 52.381 0.00 0.00 0.00 1.98
2560 3735 2.223829 GCAGCTCTAGTTGGCGAGATAA 60.224 50.000 0.00 0.00 0.00 1.75
2561 3736 3.738281 GCAGCTCTAGTTGGCGAGATAAA 60.738 47.826 0.00 0.00 0.00 1.40
2562 3737 4.047822 CAGCTCTAGTTGGCGAGATAAAG 58.952 47.826 0.00 0.00 0.00 1.85
2563 3738 3.954904 AGCTCTAGTTGGCGAGATAAAGA 59.045 43.478 0.00 0.00 0.00 2.52
2564 3739 4.037446 AGCTCTAGTTGGCGAGATAAAGAG 59.963 45.833 0.00 0.00 33.88 2.85
2565 3740 4.794655 GCTCTAGTTGGCGAGATAAAGAGG 60.795 50.000 0.00 0.00 31.89 3.69
2566 3741 2.317530 AGTTGGCGAGATAAAGAGGC 57.682 50.000 0.00 0.00 0.00 4.70
2567 3742 1.834263 AGTTGGCGAGATAAAGAGGCT 59.166 47.619 0.00 0.00 0.00 4.58
2568 3743 2.237392 AGTTGGCGAGATAAAGAGGCTT 59.763 45.455 0.00 0.00 0.00 4.35
2569 3744 2.604046 TGGCGAGATAAAGAGGCTTC 57.396 50.000 0.00 0.00 0.00 3.86
2570 3745 2.111384 TGGCGAGATAAAGAGGCTTCT 58.889 47.619 0.00 0.00 34.29 2.85
2571 3746 2.501723 TGGCGAGATAAAGAGGCTTCTT 59.498 45.455 5.05 5.05 45.51 2.52
2580 3755 3.342377 AAGAGGCTTCTTTCTGTAGGC 57.658 47.619 5.05 0.00 40.79 3.93
2581 3756 1.557371 AGAGGCTTCTTTCTGTAGGCC 59.443 52.381 0.00 0.00 38.98 5.19
2582 3757 0.621082 AGGCTTCTTTCTGTAGGCCC 59.379 55.000 0.00 0.00 38.98 5.80
2583 3758 0.328258 GGCTTCTTTCTGTAGGCCCA 59.672 55.000 0.00 0.00 33.58 5.36
2584 3759 1.680249 GGCTTCTTTCTGTAGGCCCAG 60.680 57.143 0.00 0.00 33.58 4.45
2585 3760 1.680249 GCTTCTTTCTGTAGGCCCAGG 60.680 57.143 0.00 0.00 33.14 4.45
2586 3761 0.991920 TTCTTTCTGTAGGCCCAGGG 59.008 55.000 0.00 0.00 33.14 4.45
2599 3774 1.901591 CCCAGGGCATGTGATATCAC 58.098 55.000 25.95 25.95 46.59 3.06
2611 3786 4.505313 GTGATATCACATGCGAGTAGGA 57.495 45.455 27.33 0.00 45.75 2.94
2612 3787 4.480541 GTGATATCACATGCGAGTAGGAG 58.519 47.826 27.33 0.00 45.75 3.69
2613 3788 4.022762 GTGATATCACATGCGAGTAGGAGT 60.023 45.833 27.33 0.00 45.75 3.85
2614 3789 5.181433 GTGATATCACATGCGAGTAGGAGTA 59.819 44.000 27.33 0.00 45.75 2.59
2615 3790 5.412904 TGATATCACATGCGAGTAGGAGTAG 59.587 44.000 0.00 0.00 0.00 2.57
2616 3791 3.277142 TCACATGCGAGTAGGAGTAGA 57.723 47.619 0.00 0.00 0.00 2.59
2617 3792 3.617284 TCACATGCGAGTAGGAGTAGAA 58.383 45.455 0.00 0.00 0.00 2.10
2618 3793 4.014406 TCACATGCGAGTAGGAGTAGAAA 58.986 43.478 0.00 0.00 0.00 2.52
2619 3794 4.645136 TCACATGCGAGTAGGAGTAGAAAT 59.355 41.667 0.00 0.00 0.00 2.17
2620 3795 5.826208 TCACATGCGAGTAGGAGTAGAAATA 59.174 40.000 0.00 0.00 0.00 1.40
2621 3796 6.320418 TCACATGCGAGTAGGAGTAGAAATAA 59.680 38.462 0.00 0.00 0.00 1.40
2622 3797 6.978659 CACATGCGAGTAGGAGTAGAAATAAA 59.021 38.462 0.00 0.00 0.00 1.40
2623 3798 7.168302 CACATGCGAGTAGGAGTAGAAATAAAG 59.832 40.741 0.00 0.00 0.00 1.85
2624 3799 6.770746 TGCGAGTAGGAGTAGAAATAAAGT 57.229 37.500 0.00 0.00 0.00 2.66
2625 3800 7.166691 TGCGAGTAGGAGTAGAAATAAAGTT 57.833 36.000 0.00 0.00 0.00 2.66
2626 3801 8.284945 TGCGAGTAGGAGTAGAAATAAAGTTA 57.715 34.615 0.00 0.00 0.00 2.24
2627 3802 8.404000 TGCGAGTAGGAGTAGAAATAAAGTTAG 58.596 37.037 0.00 0.00 0.00 2.34
2628 3803 8.404765 GCGAGTAGGAGTAGAAATAAAGTTAGT 58.595 37.037 0.00 0.00 0.00 2.24
2629 3804 9.934190 CGAGTAGGAGTAGAAATAAAGTTAGTC 57.066 37.037 0.00 0.00 0.00 2.59
2642 3817 9.914834 AAATAAAGTTAGTCATATGTTAGCCCA 57.085 29.630 1.90 0.00 0.00 5.36
2643 3818 9.914834 AATAAAGTTAGTCATATGTTAGCCCAA 57.085 29.630 1.90 0.00 0.00 4.12
2644 3819 9.914834 ATAAAGTTAGTCATATGTTAGCCCAAA 57.085 29.630 1.90 0.00 0.00 3.28
2645 3820 8.823220 AAAGTTAGTCATATGTTAGCCCAAAT 57.177 30.769 1.90 0.00 0.00 2.32
2646 3821 7.807977 AGTTAGTCATATGTTAGCCCAAATG 57.192 36.000 1.90 0.00 0.00 2.32
2647 3822 6.772716 AGTTAGTCATATGTTAGCCCAAATGG 59.227 38.462 1.90 0.00 37.09 3.16
2666 3841 2.488639 GGACTTTCGATCCCTCGTAC 57.511 55.000 0.00 0.00 45.25 3.67
2667 3842 2.022934 GGACTTTCGATCCCTCGTACT 58.977 52.381 0.00 0.00 45.25 2.73
2668 3843 2.223525 GGACTTTCGATCCCTCGTACTG 60.224 54.545 0.00 0.00 45.25 2.74
2669 3844 1.134560 ACTTTCGATCCCTCGTACTGC 59.865 52.381 0.00 0.00 45.25 4.40
2670 3845 1.405821 CTTTCGATCCCTCGTACTGCT 59.594 52.381 0.00 0.00 45.25 4.24
2671 3846 0.738975 TTCGATCCCTCGTACTGCTG 59.261 55.000 0.00 0.00 45.25 4.41
2672 3847 0.393944 TCGATCCCTCGTACTGCTGT 60.394 55.000 0.66 0.66 45.25 4.40
2673 3848 0.456221 CGATCCCTCGTACTGCTGTT 59.544 55.000 0.09 0.00 40.07 3.16
2674 3849 1.135083 CGATCCCTCGTACTGCTGTTT 60.135 52.381 0.09 0.00 40.07 2.83
2675 3850 2.271800 GATCCCTCGTACTGCTGTTTG 58.728 52.381 0.09 0.00 0.00 2.93
2676 3851 0.320374 TCCCTCGTACTGCTGTTTGG 59.680 55.000 0.09 0.00 0.00 3.28
2677 3852 0.034896 CCCTCGTACTGCTGTTTGGT 59.965 55.000 0.09 0.00 0.00 3.67
2678 3853 1.542547 CCCTCGTACTGCTGTTTGGTT 60.543 52.381 0.09 0.00 0.00 3.67
2679 3854 1.531149 CCTCGTACTGCTGTTTGGTTG 59.469 52.381 0.09 0.00 0.00 3.77
2680 3855 0.941542 TCGTACTGCTGTTTGGTTGC 59.058 50.000 0.09 0.00 0.00 4.17
2681 3856 0.384230 CGTACTGCTGTTTGGTTGCG 60.384 55.000 0.09 0.00 0.00 4.85
2682 3857 0.040425 GTACTGCTGTTTGGTTGCGG 60.040 55.000 0.09 0.00 38.86 5.69
2683 3858 0.179043 TACTGCTGTTTGGTTGCGGA 60.179 50.000 0.09 0.00 36.92 5.54
2684 3859 1.034838 ACTGCTGTTTGGTTGCGGAA 61.035 50.000 0.00 0.00 36.92 4.30
2685 3860 0.594796 CTGCTGTTTGGTTGCGGAAC 60.595 55.000 11.85 11.85 35.28 3.62
2700 3875 2.990066 GGAACGGACCTGATGAGATT 57.010 50.000 0.00 0.00 0.00 2.40
2701 3876 2.555199 GGAACGGACCTGATGAGATTG 58.445 52.381 0.00 0.00 0.00 2.67
2702 3877 2.555199 GAACGGACCTGATGAGATTGG 58.445 52.381 0.00 0.00 0.00 3.16
2703 3878 1.573108 ACGGACCTGATGAGATTGGT 58.427 50.000 0.00 0.00 35.23 3.67
2704 3879 2.747177 ACGGACCTGATGAGATTGGTA 58.253 47.619 0.00 0.00 32.30 3.25
2705 3880 2.431057 ACGGACCTGATGAGATTGGTAC 59.569 50.000 0.00 0.00 32.30 3.34
2706 3881 2.224066 CGGACCTGATGAGATTGGTACC 60.224 54.545 4.43 4.43 32.30 3.34
2707 3882 3.041946 GGACCTGATGAGATTGGTACCT 58.958 50.000 14.36 0.00 32.30 3.08
2708 3883 3.456277 GGACCTGATGAGATTGGTACCTT 59.544 47.826 14.36 0.00 32.30 3.50
2709 3884 4.654262 GGACCTGATGAGATTGGTACCTTA 59.346 45.833 14.36 1.20 32.30 2.69
2710 3885 5.308237 GGACCTGATGAGATTGGTACCTTAT 59.692 44.000 14.36 6.63 32.30 1.73
2711 3886 6.179906 ACCTGATGAGATTGGTACCTTATG 57.820 41.667 14.36 0.00 0.00 1.90
2712 3887 4.999950 CCTGATGAGATTGGTACCTTATGC 59.000 45.833 14.36 0.63 0.00 3.14
2713 3888 4.973168 TGATGAGATTGGTACCTTATGCC 58.027 43.478 14.36 0.00 0.00 4.40
2714 3889 4.411869 TGATGAGATTGGTACCTTATGCCA 59.588 41.667 14.36 4.82 42.14 4.92
2715 3890 4.422073 TGAGATTGGTACCTTATGCCAG 57.578 45.455 14.36 0.00 44.87 4.85
2716 3891 3.780294 TGAGATTGGTACCTTATGCCAGT 59.220 43.478 14.36 0.00 44.87 4.00
2717 3892 4.966168 TGAGATTGGTACCTTATGCCAGTA 59.034 41.667 14.36 0.00 44.87 2.74
2718 3893 5.070446 TGAGATTGGTACCTTATGCCAGTAG 59.930 44.000 14.36 0.00 44.87 2.57
2719 3894 4.348168 AGATTGGTACCTTATGCCAGTAGG 59.652 45.833 14.36 0.00 44.87 3.18
2720 3895 3.408157 TGGTACCTTATGCCAGTAGGA 57.592 47.619 14.36 0.00 38.32 2.94
2721 3896 3.936461 TGGTACCTTATGCCAGTAGGAT 58.064 45.455 14.36 0.00 38.32 3.24
2722 3897 4.303794 TGGTACCTTATGCCAGTAGGATT 58.696 43.478 14.36 0.00 38.32 3.01
2723 3898 4.102524 TGGTACCTTATGCCAGTAGGATTG 59.897 45.833 14.36 0.00 38.32 2.67
2724 3899 3.864789 ACCTTATGCCAGTAGGATTGG 57.135 47.619 2.19 0.00 38.78 3.16
2725 3900 3.393687 ACCTTATGCCAGTAGGATTGGA 58.606 45.455 2.19 0.00 37.96 3.53
2726 3901 3.785887 ACCTTATGCCAGTAGGATTGGAA 59.214 43.478 2.19 0.00 37.96 3.53
2727 3902 4.416848 ACCTTATGCCAGTAGGATTGGAAT 59.583 41.667 2.19 0.00 37.70 3.01
2728 3903 4.763793 CCTTATGCCAGTAGGATTGGAATG 59.236 45.833 0.00 0.00 34.71 2.67
2729 3904 5.456619 CCTTATGCCAGTAGGATTGGAATGA 60.457 44.000 0.00 0.00 34.71 2.57
2730 3905 3.565764 TGCCAGTAGGATTGGAATGAG 57.434 47.619 0.00 0.00 37.96 2.90
2731 3906 2.225467 GCCAGTAGGATTGGAATGAGC 58.775 52.381 0.00 0.00 37.96 4.26
2732 3907 2.158696 GCCAGTAGGATTGGAATGAGCT 60.159 50.000 0.00 0.00 37.96 4.09
2733 3908 3.071602 GCCAGTAGGATTGGAATGAGCTA 59.928 47.826 0.00 0.00 37.96 3.32
2734 3909 4.636249 CCAGTAGGATTGGAATGAGCTAC 58.364 47.826 0.00 0.00 37.96 3.58
2735 3910 4.503991 CCAGTAGGATTGGAATGAGCTACC 60.504 50.000 0.00 0.00 37.96 3.18
2736 3911 3.648545 AGTAGGATTGGAATGAGCTACCC 59.351 47.826 0.00 0.00 0.00 3.69
2737 3912 2.781667 AGGATTGGAATGAGCTACCCT 58.218 47.619 0.00 0.00 0.00 4.34
2738 3913 2.441001 AGGATTGGAATGAGCTACCCTG 59.559 50.000 0.00 0.00 0.00 4.45
2739 3914 2.439507 GGATTGGAATGAGCTACCCTGA 59.560 50.000 0.00 0.00 0.00 3.86
2740 3915 3.073650 GGATTGGAATGAGCTACCCTGAT 59.926 47.826 0.00 0.00 0.00 2.90
2741 3916 4.446889 GGATTGGAATGAGCTACCCTGATT 60.447 45.833 0.00 0.00 29.53 2.57
2742 3917 5.221925 GGATTGGAATGAGCTACCCTGATTA 60.222 44.000 0.00 0.00 26.84 1.75
2743 3918 5.708736 TTGGAATGAGCTACCCTGATTAA 57.291 39.130 0.00 0.00 26.84 1.40
2744 3919 5.912149 TGGAATGAGCTACCCTGATTAAT 57.088 39.130 0.00 0.00 26.84 1.40
2745 3920 7.387265 TTGGAATGAGCTACCCTGATTAATA 57.613 36.000 0.00 0.00 26.84 0.98
2746 3921 6.769512 TGGAATGAGCTACCCTGATTAATAC 58.230 40.000 0.00 0.00 26.84 1.89
2747 3922 6.328934 TGGAATGAGCTACCCTGATTAATACA 59.671 38.462 0.00 0.00 26.84 2.29
2748 3923 7.147391 TGGAATGAGCTACCCTGATTAATACAA 60.147 37.037 0.00 0.00 26.84 2.41
2749 3924 7.885399 GGAATGAGCTACCCTGATTAATACAAT 59.115 37.037 0.00 0.00 26.84 2.71
2750 3925 8.854614 AATGAGCTACCCTGATTAATACAATC 57.145 34.615 0.00 0.00 0.00 2.67
2751 3926 6.769512 TGAGCTACCCTGATTAATACAATCC 58.230 40.000 0.00 0.00 0.00 3.01
2752 3927 6.558775 TGAGCTACCCTGATTAATACAATCCT 59.441 38.462 0.00 0.00 0.00 3.24
2753 3928 7.072454 TGAGCTACCCTGATTAATACAATCCTT 59.928 37.037 0.00 0.00 0.00 3.36
2754 3929 7.816411 AGCTACCCTGATTAATACAATCCTTT 58.184 34.615 0.00 0.00 0.00 3.11
2755 3930 7.939588 AGCTACCCTGATTAATACAATCCTTTC 59.060 37.037 0.00 0.00 0.00 2.62
2756 3931 7.175119 GCTACCCTGATTAATACAATCCTTTCC 59.825 40.741 0.00 0.00 0.00 3.13
2757 3932 6.980577 ACCCTGATTAATACAATCCTTTCCA 58.019 36.000 0.00 0.00 0.00 3.53
2758 3933 7.595488 ACCCTGATTAATACAATCCTTTCCAT 58.405 34.615 0.00 0.00 0.00 3.41
2759 3934 8.067488 ACCCTGATTAATACAATCCTTTCCATT 58.933 33.333 0.00 0.00 0.00 3.16
2760 3935 8.579863 CCCTGATTAATACAATCCTTTCCATTC 58.420 37.037 0.00 0.00 0.00 2.67
2761 3936 9.135189 CCTGATTAATACAATCCTTTCCATTCA 57.865 33.333 0.00 0.00 0.00 2.57
2762 3937 9.956720 CTGATTAATACAATCCTTTCCATTCAC 57.043 33.333 0.00 0.00 0.00 3.18
2763 3938 9.473007 TGATTAATACAATCCTTTCCATTCACA 57.527 29.630 0.00 0.00 0.00 3.58
2867 4042 2.359169 CCAGCGAGGGTGGCTAGAA 61.359 63.158 0.38 0.00 44.28 2.10
2869 4044 2.202946 GCGAGGGTGGCTAGAAGC 60.203 66.667 0.00 0.00 41.46 3.86
2876 4051 3.470888 TGGCTAGAAGCGGGGCTC 61.471 66.667 0.00 0.00 43.62 4.70
2881 4056 1.075226 TAGAAGCGGGGCTCTCCAT 60.075 57.895 0.00 0.00 38.25 3.41
2885 4060 2.876368 AAGCGGGGCTCTCCATTTCG 62.876 60.000 0.00 0.00 38.25 3.46
2887 4062 1.078426 CGGGGCTCTCCATTTCGTT 60.078 57.895 0.00 0.00 37.22 3.85
2947 4123 2.738213 ATCGGCATCGGGGATTGAGC 62.738 60.000 0.00 0.00 36.95 4.26
3030 4206 2.359900 CGGCTGGACTAAATTTGAGCT 58.640 47.619 0.00 0.00 0.00 4.09
3051 4230 3.808834 AGTGAGGGAAAGTTTTAGGGG 57.191 47.619 0.00 0.00 0.00 4.79
3052 4231 2.378886 AGTGAGGGAAAGTTTTAGGGGG 59.621 50.000 0.00 0.00 0.00 5.40
3117 4296 8.668653 TGCTAGATGATGATTAATCCCCTAAAA 58.331 33.333 12.90 0.00 34.00 1.52
3186 4446 4.202419 TGCCCTAAGCTTTACTGAACTTCA 60.202 41.667 3.20 0.00 44.23 3.02
3331 4591 2.162809 TCATCATGTGCATGCAAGTGAC 59.837 45.455 28.37 16.04 38.65 3.67
3438 7066 7.644157 GGGCTCATATATTTGTTTCGAGAAAAC 59.356 37.037 0.00 0.00 46.22 2.43
3470 7098 5.809562 ACTTTGCGTTTCATTTCATTGAACA 59.190 32.000 0.00 0.00 35.42 3.18
3471 7099 6.479660 ACTTTGCGTTTCATTTCATTGAACAT 59.520 30.769 0.00 0.00 35.42 2.71
3489 7117 7.239763 TGAACATGAAGAGAATACAGGTACA 57.760 36.000 0.00 0.00 0.00 2.90
3490 7118 7.676004 TGAACATGAAGAGAATACAGGTACAA 58.324 34.615 0.00 0.00 0.00 2.41
3491 7119 7.819415 TGAACATGAAGAGAATACAGGTACAAG 59.181 37.037 0.00 0.00 0.00 3.16
3492 7120 7.246171 ACATGAAGAGAATACAGGTACAAGT 57.754 36.000 0.00 0.00 0.00 3.16
3493 7121 8.362464 ACATGAAGAGAATACAGGTACAAGTA 57.638 34.615 0.00 0.00 0.00 2.24
3494 7122 8.251721 ACATGAAGAGAATACAGGTACAAGTAC 58.748 37.037 0.00 1.77 35.40 2.73
3495 7123 7.770366 TGAAGAGAATACAGGTACAAGTACA 57.230 36.000 12.00 0.00 37.78 2.90
3496 7124 8.185506 TGAAGAGAATACAGGTACAAGTACAA 57.814 34.615 12.00 0.00 37.78 2.41
3497 7125 8.086522 TGAAGAGAATACAGGTACAAGTACAAC 58.913 37.037 12.00 0.00 37.78 3.32
3583 7211 1.512926 CACCACCTACAGACAGCAAC 58.487 55.000 0.00 0.00 0.00 4.17
3586 7214 1.419374 CACCTACAGACAGCAACGAC 58.581 55.000 0.00 0.00 0.00 4.34
3596 7224 0.784778 CAGCAACGACGAAAGGTCTC 59.215 55.000 0.00 0.00 43.79 3.36
3732 7360 9.936329 AATTATGTCCACTACCCAAGAATAAAT 57.064 29.630 0.00 0.00 0.00 1.40
3785 7413 7.923414 ACTTCTAACATGGATAGAAAACACC 57.077 36.000 18.30 0.00 38.53 4.16
3786 7414 7.458397 ACTTCTAACATGGATAGAAAACACCA 58.542 34.615 18.30 0.00 38.53 4.17
3787 7415 7.607991 ACTTCTAACATGGATAGAAAACACCAG 59.392 37.037 18.30 10.83 38.53 4.00
3788 7416 7.016153 TCTAACATGGATAGAAAACACCAGT 57.984 36.000 7.75 0.00 35.84 4.00
3789 7417 8.141298 TCTAACATGGATAGAAAACACCAGTA 57.859 34.615 7.75 0.00 35.84 2.74
3790 7418 8.598916 TCTAACATGGATAGAAAACACCAGTAA 58.401 33.333 7.75 0.00 35.84 2.24
3791 7419 7.687941 AACATGGATAGAAAACACCAGTAAG 57.312 36.000 0.00 0.00 35.84 2.34
3792 7420 6.180472 ACATGGATAGAAAACACCAGTAAGG 58.820 40.000 0.00 0.00 45.67 2.69
3863 7491 8.145122 GGTGGATGGTACTAATTCTCTAGAAAG 58.855 40.741 0.00 0.00 37.61 2.62
3978 7607 7.487829 GTCTTCTACAGAGAGTCAAAGCATTAG 59.512 40.741 0.00 0.00 31.77 1.73
4005 7634 7.604545 CAGATGAGAGATGCATGTGAAATCTAT 59.395 37.037 2.46 0.00 38.80 1.98
4188 7819 2.866762 GCTAGTGCTTAGTTTCATCCGG 59.133 50.000 0.00 0.00 36.03 5.14
4189 7820 3.679083 GCTAGTGCTTAGTTTCATCCGGT 60.679 47.826 0.00 0.00 36.03 5.28
4190 7821 4.441079 GCTAGTGCTTAGTTTCATCCGGTA 60.441 45.833 0.00 0.00 36.03 4.02
4191 7822 3.858247 AGTGCTTAGTTTCATCCGGTAC 58.142 45.455 0.00 0.00 0.00 3.34
4192 7823 2.934553 GTGCTTAGTTTCATCCGGTACC 59.065 50.000 0.16 0.16 0.00 3.34
4193 7824 2.835764 TGCTTAGTTTCATCCGGTACCT 59.164 45.455 10.90 0.00 0.00 3.08
4194 7825 3.262405 TGCTTAGTTTCATCCGGTACCTT 59.738 43.478 10.90 0.00 0.00 3.50
4195 7826 3.869832 GCTTAGTTTCATCCGGTACCTTC 59.130 47.826 10.90 0.00 0.00 3.46
4196 7827 4.439968 CTTAGTTTCATCCGGTACCTTCC 58.560 47.826 10.90 0.00 0.00 3.46
4197 7828 2.547990 AGTTTCATCCGGTACCTTCCT 58.452 47.619 10.90 0.00 0.00 3.36
4198 7829 2.236395 AGTTTCATCCGGTACCTTCCTG 59.764 50.000 10.90 2.48 0.00 3.86
4199 7830 2.235402 GTTTCATCCGGTACCTTCCTGA 59.765 50.000 10.90 4.89 0.00 3.86
4200 7831 2.241281 TCATCCGGTACCTTCCTGAA 57.759 50.000 10.90 0.00 0.00 3.02
4201 7832 1.829222 TCATCCGGTACCTTCCTGAAC 59.171 52.381 10.90 0.00 0.00 3.18
4202 7833 1.553248 CATCCGGTACCTTCCTGAACA 59.447 52.381 10.90 0.00 0.00 3.18
4203 7834 1.263356 TCCGGTACCTTCCTGAACAG 58.737 55.000 10.90 0.00 0.00 3.16
4204 7835 1.203087 TCCGGTACCTTCCTGAACAGA 60.203 52.381 10.90 0.00 0.00 3.41
4205 7836 1.831736 CCGGTACCTTCCTGAACAGAT 59.168 52.381 10.90 0.00 0.00 2.90
4206 7837 2.418746 CCGGTACCTTCCTGAACAGATG 60.419 54.545 10.90 0.00 0.00 2.90
4207 7838 2.496070 CGGTACCTTCCTGAACAGATGA 59.504 50.000 10.90 0.00 0.00 2.92
4208 7839 3.133003 CGGTACCTTCCTGAACAGATGAT 59.867 47.826 10.90 0.00 0.00 2.45
4209 7840 4.383118 CGGTACCTTCCTGAACAGATGATT 60.383 45.833 10.90 0.00 0.00 2.57
4210 7841 5.119694 GGTACCTTCCTGAACAGATGATTC 58.880 45.833 4.06 0.00 0.00 2.52
4211 7842 5.104735 GGTACCTTCCTGAACAGATGATTCT 60.105 44.000 4.06 0.00 0.00 2.40
4256 7887 3.374988 TGAAACAGTCAACACAGCTGAAG 59.625 43.478 23.35 14.90 31.51 3.02
4267 7898 2.421424 CACAGCTGAAGGTAGATTTGCC 59.579 50.000 23.35 0.00 0.00 4.52
4380 8011 9.132521 CTTGTCATATGAACATCTTTTTCCAAC 57.867 33.333 7.07 0.00 0.00 3.77
4382 8013 8.805175 TGTCATATGAACATCTTTTTCCAACAT 58.195 29.630 7.07 0.00 0.00 2.71
4628 8548 6.616947 TGACTGAAACTGTTAACCTTGTTTG 58.383 36.000 19.17 11.98 33.49 2.93
4637 8557 6.715264 ACTGTTAACCTTGTTTGAGAATAGGG 59.285 38.462 2.48 0.00 0.00 3.53
4693 8614 9.311916 GCAATTTACTTTATGGCATCATAAACA 57.688 29.630 1.65 0.00 45.56 2.83
4784 8705 1.285078 GCTACCCTCCAATGGTTCCTT 59.715 52.381 0.00 0.00 37.31 3.36
4894 8815 4.594062 TCTGTTGGTAAGCAGGTAGGTTTA 59.406 41.667 0.00 0.00 39.08 2.01
4960 8881 7.444792 ACATCATACATGTTTTTGTTTTGCCAT 59.555 29.630 2.30 0.00 0.00 4.40
5269 9191 4.717778 TCGGGTAAATTTCCAGAGGTATCA 59.282 41.667 0.00 0.00 0.00 2.15
5341 9263 2.724977 TGCTCTCAGTACACCTTTCG 57.275 50.000 0.00 0.00 0.00 3.46
5431 9353 4.528076 TCCCTCTGCACTACTAGAGATT 57.472 45.455 0.00 0.00 42.34 2.40
5813 9735 4.024387 CATTTAATAATGTCGGGTCACCGG 60.024 45.833 0.00 0.00 44.86 5.28
5923 9845 4.051922 GGACTATACACGGAAGATTGCTG 58.948 47.826 0.00 0.00 0.00 4.41
6239 10242 2.289257 GGAAAAGATGCTGCCTTTTGCT 60.289 45.455 20.11 2.54 43.76 3.91
6321 10324 2.421775 ACTGAGATGTACACTGAGAGCG 59.578 50.000 15.06 0.00 0.00 5.03
6343 10346 2.013400 GCTTGGTTTGGTTTGGTTTGG 58.987 47.619 0.00 0.00 0.00 3.28
6435 10438 1.338389 GCCCGCTTGTCCAAGTACTTA 60.338 52.381 8.04 0.00 40.45 2.24
6466 10469 3.636300 CACCCTGAAAGAATTGTGTGGAA 59.364 43.478 0.00 0.00 34.07 3.53
6467 10470 4.099266 CACCCTGAAAGAATTGTGTGGAAA 59.901 41.667 0.00 0.00 34.07 3.13
6489 10492 2.358322 AAAAGGAACGGCTTGGAGAA 57.642 45.000 0.00 0.00 0.00 2.87
6504 10507 3.084039 TGGAGAAGATGCAACATGTTCC 58.916 45.455 8.48 0.00 0.00 3.62
6512 10515 0.675633 GCAACATGTTCCTGGCTGTT 59.324 50.000 8.48 0.00 32.27 3.16
6531 10534 1.200760 TCACCATGGGAGTGGACTGG 61.201 60.000 18.09 0.00 42.02 4.00
6545 10548 3.313526 GTGGACTGGAACATGCATGATAC 59.686 47.826 32.75 22.50 38.20 2.24
6546 10549 3.200605 TGGACTGGAACATGCATGATACT 59.799 43.478 32.75 13.63 38.20 2.12
6547 10550 3.562973 GGACTGGAACATGCATGATACTG 59.437 47.826 32.75 25.68 38.20 2.74
6548 10551 4.194640 GACTGGAACATGCATGATACTGT 58.805 43.478 32.75 28.55 38.20 3.55
6549 10552 5.357742 ACTGGAACATGCATGATACTGTA 57.642 39.130 32.75 5.62 38.20 2.74
6589 10592 0.450583 ATCGTAAAGAGCTCGCGTGA 59.549 50.000 13.13 0.00 0.00 4.35
6630 10633 5.302059 TGTTTGGTTGAATAAAATCCGTCCA 59.698 36.000 0.00 0.00 0.00 4.02
6632 10635 6.597832 TTGGTTGAATAAAATCCGTCCATT 57.402 33.333 0.00 0.00 0.00 3.16
6672 10675 3.634568 TGTTAGTTCAAACAATGCCCG 57.365 42.857 0.00 0.00 36.45 6.13
6714 10717 4.518970 TGTGAAATTCTTGTGTTCTAGCCC 59.481 41.667 0.00 0.00 0.00 5.19
6743 10746 8.786826 AATTTGGTCACTATATCTCGAAACAA 57.213 30.769 0.00 0.00 0.00 2.83
6751 10754 4.900635 ATATCTCGAAACAATTGGCCAC 57.099 40.909 3.88 0.00 0.00 5.01
6760 10763 1.608590 ACAATTGGCCACTTTCTGACG 59.391 47.619 3.88 0.00 0.00 4.35
6762 10765 2.489329 CAATTGGCCACTTTCTGACGAT 59.511 45.455 3.88 0.00 0.00 3.73
6767 10770 2.749621 GGCCACTTTCTGACGATTTCAT 59.250 45.455 0.00 0.00 32.17 2.57
6812 10815 0.250295 TGCCTTCAGTCCTCGGTTTG 60.250 55.000 0.00 0.00 0.00 2.93
6925 11017 5.560953 GCAGGGTATCAATTACAAGAATCGC 60.561 44.000 0.00 0.00 31.99 4.58
6929 11021 4.536364 ATCAATTACAAGAATCGCACGG 57.464 40.909 0.00 0.00 0.00 4.94
6948 11040 2.440501 GGAAACATGCGAACAATAGCG 58.559 47.619 0.00 0.00 35.87 4.26
7045 13172 1.766864 TTCCCAGTCGTCCCAACCA 60.767 57.895 0.00 0.00 0.00 3.67
7059 13186 1.442769 CAACCAGGGACAGATCGTTG 58.557 55.000 0.00 0.00 0.00 4.10
7186 13314 7.676947 AGTTATTCTGCACCTAGTTAAGAACA 58.323 34.615 0.00 0.00 30.17 3.18
7209 13337 4.344104 AGGAACACAATAACCAGGGAATG 58.656 43.478 0.00 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.931275 AGTGAAATGGTGAAAGTACTTTTCTC 58.069 34.615 21.40 13.20 44.49 2.87
22 23 5.998363 GGAGAGTGAAATGGTGAAAGTACTT 59.002 40.000 1.12 1.12 0.00 2.24
46 47 6.219417 ACATAGGTGTGAGAAGAGAAGATG 57.781 41.667 0.00 0.00 37.14 2.90
89 90 5.407995 CGTACTACTAGACTATAGTGGGTGC 59.592 48.000 10.90 0.00 33.65 5.01
147 148 0.460284 GGTGGAACGTCGATCATGCT 60.460 55.000 0.00 0.00 38.12 3.79
157 181 2.167398 CTCGTCATGGGGTGGAACGT 62.167 60.000 0.00 0.00 38.12 3.99
162 186 2.184322 CGACTCGTCATGGGGTGG 59.816 66.667 0.00 0.00 0.00 4.61
195 219 1.315257 GCCCATCCACGTGCATCTTT 61.315 55.000 10.91 0.00 0.00 2.52
204 228 3.520862 GCCATGTGCCCATCCACG 61.521 66.667 0.00 0.00 38.55 4.94
240 264 0.794229 GCAATGTGTCAACCGATGCG 60.794 55.000 0.00 0.00 0.00 4.73
246 270 3.456280 ACAATTGTGCAATGTGTCAACC 58.544 40.909 11.07 0.00 0.00 3.77
281 305 3.756933 ACCATGCATTGCTTGTCTTTT 57.243 38.095 19.53 0.72 32.83 2.27
287 311 1.202114 ACCGTTACCATGCATTGCTTG 59.798 47.619 15.59 15.59 34.20 4.01
288 312 1.202114 CACCGTTACCATGCATTGCTT 59.798 47.619 10.49 0.00 0.00 3.91
298 322 3.499338 TCTCTTCCTTACACCGTTACCA 58.501 45.455 0.00 0.00 0.00 3.25
301 325 3.366679 CGCTTCTCTTCCTTACACCGTTA 60.367 47.826 0.00 0.00 0.00 3.18
303 327 1.067776 CGCTTCTCTTCCTTACACCGT 60.068 52.381 0.00 0.00 0.00 4.83
309 333 7.466455 CGTGTTATAGTACGCTTCTCTTCCTTA 60.466 40.741 0.00 0.00 33.25 2.69
317 341 4.034975 GGAGTCGTGTTATAGTACGCTTCT 59.965 45.833 6.10 5.09 39.94 2.85
368 392 3.692198 ATGGCTATGGCATGGGGT 58.308 55.556 10.98 0.00 46.89 4.95
374 398 2.510411 CGGTGGATGGCTATGGCA 59.490 61.111 2.58 0.00 43.52 4.92
375 399 2.980233 GCGGTGGATGGCTATGGC 60.980 66.667 0.00 0.00 37.82 4.40
376 400 2.666190 CGCGGTGGATGGCTATGG 60.666 66.667 0.00 0.00 0.00 2.74
377 401 3.349006 GCGCGGTGGATGGCTATG 61.349 66.667 8.83 0.00 0.00 2.23
378 402 4.626081 GGCGCGGTGGATGGCTAT 62.626 66.667 8.83 0.00 0.00 2.97
421 445 1.271840 GGTCACCATAGGCCTCACCA 61.272 60.000 9.68 0.00 43.14 4.17
540 613 4.083862 GCACCTGGGACGGAGGTC 62.084 72.222 0.00 0.00 42.25 3.85
568 641 1.379977 CTGGCCGACACCTCTCCTA 60.380 63.158 0.00 0.00 0.00 2.94
633 706 2.893398 GCCAGAGGAATCGTCGGT 59.107 61.111 12.59 0.00 0.00 4.69
670 743 2.997315 CGCCACACCCTCTCCTCA 60.997 66.667 0.00 0.00 0.00 3.86
671 744 3.775654 CCGCCACACCCTCTCCTC 61.776 72.222 0.00 0.00 0.00 3.71
710 783 2.948720 GCCCTTCTCTGGCGTCACT 61.949 63.158 0.00 0.00 39.48 3.41
748 821 1.738350 TGAAGTTGCGGAACACGAAAA 59.262 42.857 22.29 0.00 42.95 2.29
824 1617 2.972021 TGTTCTCTTGTGGGTGATCTCA 59.028 45.455 0.00 0.00 0.00 3.27
831 1632 2.758423 GGTGTTTTGTTCTCTTGTGGGT 59.242 45.455 0.00 0.00 0.00 4.51
866 1677 4.099170 CTTCCGTCGGACTCGCGT 62.099 66.667 15.07 0.00 35.40 6.01
924 1735 1.716581 CTTGCGACGTTGAGAGAGTTC 59.283 52.381 7.08 0.00 0.00 3.01
1178 1998 2.707849 CCAGCATTGGCCTGTGAGC 61.708 63.158 3.32 0.75 42.56 4.26
1197 2017 0.098728 GCGATTCGTCAAACCCATGG 59.901 55.000 4.14 4.14 0.00 3.66
1374 2201 2.596346 GGGAACTAGGTCTAGGTAGGC 58.404 57.143 7.92 0.00 37.49 3.93
1378 2205 1.574821 GAGGGGGAACTAGGTCTAGGT 59.425 57.143 7.92 2.67 37.49 3.08
1379 2206 1.133104 GGAGGGGGAACTAGGTCTAGG 60.133 61.905 7.92 0.00 37.49 3.02
1383 2210 1.328430 CGTGGAGGGGGAACTAGGTC 61.328 65.000 0.00 0.00 0.00 3.85
1384 2211 1.305887 CGTGGAGGGGGAACTAGGT 60.306 63.158 0.00 0.00 0.00 3.08
1385 2212 1.001248 TCGTGGAGGGGGAACTAGG 59.999 63.158 0.00 0.00 0.00 3.02
1386 2213 1.677637 GCTCGTGGAGGGGGAACTAG 61.678 65.000 0.00 0.00 0.00 2.57
1387 2214 1.684734 GCTCGTGGAGGGGGAACTA 60.685 63.158 0.00 0.00 0.00 2.24
1388 2215 3.003763 GCTCGTGGAGGGGGAACT 61.004 66.667 0.00 0.00 0.00 3.01
1418 2245 0.980423 TGCAGTACAGCATACACCCA 59.020 50.000 9.11 0.00 40.11 4.51
1434 2261 1.207488 AGGGAATGGCCACTAGTGCA 61.207 55.000 17.86 11.29 38.95 4.57
1435 2262 0.749454 CAGGGAATGGCCACTAGTGC 60.749 60.000 17.86 12.43 38.95 4.40
1436 2263 0.107017 CCAGGGAATGGCCACTAGTG 60.107 60.000 16.34 16.34 43.83 2.74
1553 2384 5.359292 ACGAGGTGGAGGAATTTACTACTAC 59.641 44.000 0.00 0.00 0.00 2.73
1554 2385 5.513233 ACGAGGTGGAGGAATTTACTACTA 58.487 41.667 0.00 0.00 0.00 1.82
1555 2386 4.351127 ACGAGGTGGAGGAATTTACTACT 58.649 43.478 0.00 0.00 0.00 2.57
1684 2618 7.270779 TGTGATGAATTTGTTCCAATTGTTCA 58.729 30.769 4.43 6.30 0.00 3.18
1685 2619 7.712264 TGTGATGAATTTGTTCCAATTGTTC 57.288 32.000 4.43 0.49 0.00 3.18
1722 2656 6.187727 ACAATTAATATGGATCGGAGGTGT 57.812 37.500 0.00 0.00 0.00 4.16
1730 2664 6.467723 AACGAGCGACAATTAATATGGATC 57.532 37.500 0.00 0.00 0.00 3.36
1745 2679 4.227512 TGACTTTGTACTAAACGAGCGA 57.772 40.909 0.00 0.00 0.00 4.93
1759 2693 4.301628 GGCCAATGTCTCTTTTGACTTTG 58.698 43.478 0.00 13.01 44.56 2.77
1761 2695 2.893489 GGGCCAATGTCTCTTTTGACTT 59.107 45.455 4.39 0.00 37.79 3.01
1763 2697 2.238521 TGGGCCAATGTCTCTTTTGAC 58.761 47.619 2.13 0.00 37.47 3.18
1764 2698 2.673775 TGGGCCAATGTCTCTTTTGA 57.326 45.000 2.13 0.00 0.00 2.69
1765 2699 2.611224 GCTTGGGCCAATGTCTCTTTTG 60.611 50.000 21.25 4.89 0.00 2.44
1767 2701 1.203100 AGCTTGGGCCAATGTCTCTTT 60.203 47.619 21.25 0.00 39.73 2.52
1881 3043 1.847328 TGATGAGAAGTGCCGAGGTA 58.153 50.000 0.00 0.00 0.00 3.08
1891 3055 5.604758 TGTACCCAAGAGATGATGAGAAG 57.395 43.478 0.00 0.00 0.00 2.85
1975 3139 0.877071 AATGATGATGCGGCCGATTC 59.123 50.000 33.48 24.16 0.00 2.52
1999 3163 4.725556 TTTAGTGCTTTTGTAGTGAGCG 57.274 40.909 0.00 0.00 39.23 5.03
2050 3214 7.465900 TCCATATTGGAATCTCTAAAAGGGT 57.534 36.000 0.00 0.00 45.00 4.34
2073 3245 8.668353 TCAACTCATTTTGCTCTGTATGTATTC 58.332 33.333 0.00 0.00 0.00 1.75
2083 3255 6.471146 AGTGTAGATCAACTCATTTTGCTCT 58.529 36.000 0.00 0.00 36.28 4.09
2161 3333 8.272545 ACTCCACCCGTTTTTAAATATAAGTC 57.727 34.615 0.00 0.00 0.00 3.01
2173 3345 2.224670 TGATTGCTACTCCACCCGTTTT 60.225 45.455 0.00 0.00 0.00 2.43
2180 3352 4.058124 TGCGATATTGATTGCTACTCCAC 58.942 43.478 0.00 0.00 42.33 4.02
2181 3353 4.335400 TGCGATATTGATTGCTACTCCA 57.665 40.909 0.00 0.00 42.33 3.86
2200 3372 3.203716 TCAAGAGAGTGATGCATGATGC 58.796 45.455 11.12 11.12 45.29 3.91
2239 3413 6.036626 CGCAAGGTAAAAGTTTCCATGTTTTT 59.963 34.615 0.00 0.00 0.00 1.94
2285 3460 2.174969 CGAGACTAGGAGCGACGCT 61.175 63.158 24.77 24.77 43.88 5.07
2288 3463 0.653636 CAGACGAGACTAGGAGCGAC 59.346 60.000 7.27 2.08 0.00 5.19
2300 3475 4.383850 AGAAGACATGGATTCAGACGAG 57.616 45.455 12.88 0.00 0.00 4.18
2354 3529 2.434843 CCCTCGGCCTCATGCAGTA 61.435 63.158 0.00 0.00 43.89 2.74
2355 3530 3.790437 CCCTCGGCCTCATGCAGT 61.790 66.667 0.00 0.00 43.89 4.40
2375 3550 2.744768 CGAAGAAGAAGGCTGCCGC 61.745 63.158 13.96 9.78 0.00 6.53
2408 3583 1.811266 CATCGACCAAGGCGGACAG 60.811 63.158 0.00 0.00 38.63 3.51
2450 3625 1.685491 CCTACTACCCTTGTCGGCTCT 60.685 57.143 0.00 0.00 0.00 4.09
2452 3627 0.686769 CCCTACTACCCTTGTCGGCT 60.687 60.000 0.00 0.00 0.00 5.52
2506 3681 2.351447 CGTTAACGAGAGCTCTTGGTCA 60.351 50.000 30.37 16.56 42.66 4.02
2511 3686 3.919223 AGAACGTTAACGAGAGCTCTT 57.081 42.857 33.06 15.50 43.02 2.85
2522 3697 2.500229 CTGCCAAGGGAAGAACGTTAA 58.500 47.619 0.00 0.00 26.79 2.01
2525 3700 1.600916 GCTGCCAAGGGAAGAACGT 60.601 57.895 0.00 0.00 26.79 3.99
2526 3701 1.301677 GAGCTGCCAAGGGAAGAACG 61.302 60.000 0.00 0.00 26.79 3.95
2527 3702 0.037447 AGAGCTGCCAAGGGAAGAAC 59.963 55.000 0.00 0.00 26.79 3.01
2528 3703 1.556911 CTAGAGCTGCCAAGGGAAGAA 59.443 52.381 0.00 0.00 26.79 2.52
2529 3704 1.198713 CTAGAGCTGCCAAGGGAAGA 58.801 55.000 0.00 0.00 26.79 2.87
2530 3705 0.908198 ACTAGAGCTGCCAAGGGAAG 59.092 55.000 0.00 0.00 0.00 3.46
2531 3706 1.003580 CAACTAGAGCTGCCAAGGGAA 59.996 52.381 0.00 0.00 0.00 3.97
2532 3707 0.615331 CAACTAGAGCTGCCAAGGGA 59.385 55.000 0.00 0.00 0.00 4.20
2533 3708 0.393537 CCAACTAGAGCTGCCAAGGG 60.394 60.000 0.00 0.00 0.00 3.95
2534 3709 1.028868 GCCAACTAGAGCTGCCAAGG 61.029 60.000 0.00 0.00 0.00 3.61
2535 3710 1.364626 CGCCAACTAGAGCTGCCAAG 61.365 60.000 0.00 0.00 0.00 3.61
2536 3711 1.375908 CGCCAACTAGAGCTGCCAA 60.376 57.895 0.00 0.00 0.00 4.52
2537 3712 2.230994 CTCGCCAACTAGAGCTGCCA 62.231 60.000 0.00 0.00 0.00 4.92
2538 3713 1.520342 CTCGCCAACTAGAGCTGCC 60.520 63.158 0.00 0.00 0.00 4.85
2539 3714 0.103937 ATCTCGCCAACTAGAGCTGC 59.896 55.000 0.00 0.00 34.66 5.25
2540 3715 3.717400 TTATCTCGCCAACTAGAGCTG 57.283 47.619 0.00 0.00 34.66 4.24
2541 3716 3.954904 TCTTTATCTCGCCAACTAGAGCT 59.045 43.478 0.00 0.00 34.66 4.09
2542 3717 4.295051 CTCTTTATCTCGCCAACTAGAGC 58.705 47.826 0.00 0.00 34.66 4.09
2543 3718 4.794655 GCCTCTTTATCTCGCCAACTAGAG 60.795 50.000 0.00 0.00 35.91 2.43
2544 3719 3.068307 GCCTCTTTATCTCGCCAACTAGA 59.932 47.826 0.00 0.00 0.00 2.43
2545 3720 3.068873 AGCCTCTTTATCTCGCCAACTAG 59.931 47.826 0.00 0.00 0.00 2.57
2546 3721 3.031736 AGCCTCTTTATCTCGCCAACTA 58.968 45.455 0.00 0.00 0.00 2.24
2547 3722 1.834263 AGCCTCTTTATCTCGCCAACT 59.166 47.619 0.00 0.00 0.00 3.16
2548 3723 2.317530 AGCCTCTTTATCTCGCCAAC 57.682 50.000 0.00 0.00 0.00 3.77
2549 3724 2.501723 AGAAGCCTCTTTATCTCGCCAA 59.498 45.455 0.00 0.00 0.00 4.52
2550 3725 2.111384 AGAAGCCTCTTTATCTCGCCA 58.889 47.619 0.00 0.00 0.00 5.69
2551 3726 2.900716 AGAAGCCTCTTTATCTCGCC 57.099 50.000 0.00 0.00 0.00 5.54
2560 3735 2.026729 GGCCTACAGAAAGAAGCCTCTT 60.027 50.000 0.00 0.00 44.11 2.85
2561 3736 1.557371 GGCCTACAGAAAGAAGCCTCT 59.443 52.381 0.00 0.00 37.42 3.69
2562 3737 1.407575 GGGCCTACAGAAAGAAGCCTC 60.408 57.143 0.84 0.00 40.32 4.70
2563 3738 0.621082 GGGCCTACAGAAAGAAGCCT 59.379 55.000 0.84 0.00 40.32 4.58
2564 3739 0.328258 TGGGCCTACAGAAAGAAGCC 59.672 55.000 4.53 0.00 39.73 4.35
2565 3740 1.680249 CCTGGGCCTACAGAAAGAAGC 60.680 57.143 10.34 0.00 40.97 3.86
2566 3741 1.065126 CCCTGGGCCTACAGAAAGAAG 60.065 57.143 10.34 0.00 40.97 2.85
2567 3742 0.991920 CCCTGGGCCTACAGAAAGAA 59.008 55.000 10.34 0.00 40.97 2.52
2568 3743 1.562672 GCCCTGGGCCTACAGAAAGA 61.563 60.000 27.77 0.00 44.06 2.52
2569 3744 1.077429 GCCCTGGGCCTACAGAAAG 60.077 63.158 27.77 1.04 44.06 2.62
2570 3745 3.087065 GCCCTGGGCCTACAGAAA 58.913 61.111 27.77 0.00 44.06 2.52
2579 3754 2.155643 GTGATATCACATGCCCTGGGC 61.156 57.143 30.97 30.97 46.68 5.36
2580 3755 1.901591 GTGATATCACATGCCCTGGG 58.098 55.000 27.33 8.86 45.75 4.45
2590 3765 4.022762 ACTCCTACTCGCATGTGATATCAC 60.023 45.833 25.95 25.95 46.59 3.06
2591 3766 4.145052 ACTCCTACTCGCATGTGATATCA 58.855 43.478 9.87 0.00 0.00 2.15
2592 3767 4.775058 ACTCCTACTCGCATGTGATATC 57.225 45.455 9.87 0.00 0.00 1.63
2593 3768 5.561679 TCTACTCCTACTCGCATGTGATAT 58.438 41.667 9.87 3.95 0.00 1.63
2594 3769 4.969484 TCTACTCCTACTCGCATGTGATA 58.031 43.478 9.87 4.14 0.00 2.15
2595 3770 3.821748 TCTACTCCTACTCGCATGTGAT 58.178 45.455 9.87 3.15 0.00 3.06
2596 3771 3.277142 TCTACTCCTACTCGCATGTGA 57.723 47.619 8.98 8.98 0.00 3.58
2597 3772 4.371855 TTTCTACTCCTACTCGCATGTG 57.628 45.455 0.00 0.00 0.00 3.21
2598 3773 6.710597 TTATTTCTACTCCTACTCGCATGT 57.289 37.500 0.00 0.00 0.00 3.21
2599 3774 7.203910 ACTTTATTTCTACTCCTACTCGCATG 58.796 38.462 0.00 0.00 0.00 4.06
2600 3775 7.349412 ACTTTATTTCTACTCCTACTCGCAT 57.651 36.000 0.00 0.00 0.00 4.73
2601 3776 6.770746 ACTTTATTTCTACTCCTACTCGCA 57.229 37.500 0.00 0.00 0.00 5.10
2602 3777 8.404765 ACTAACTTTATTTCTACTCCTACTCGC 58.595 37.037 0.00 0.00 0.00 5.03
2603 3778 9.934190 GACTAACTTTATTTCTACTCCTACTCG 57.066 37.037 0.00 0.00 0.00 4.18
2616 3791 9.914834 TGGGCTAACATATGACTAACTTTATTT 57.085 29.630 10.38 0.00 0.00 1.40
2617 3792 9.914834 TTGGGCTAACATATGACTAACTTTATT 57.085 29.630 10.38 0.00 0.00 1.40
2618 3793 9.914834 TTTGGGCTAACATATGACTAACTTTAT 57.085 29.630 10.38 0.00 0.00 1.40
2619 3794 9.914834 ATTTGGGCTAACATATGACTAACTTTA 57.085 29.630 10.38 0.00 0.00 1.85
2620 3795 8.686334 CATTTGGGCTAACATATGACTAACTTT 58.314 33.333 10.38 0.00 33.41 2.66
2621 3796 7.285401 CCATTTGGGCTAACATATGACTAACTT 59.715 37.037 10.38 0.00 33.41 2.66
2622 3797 6.772716 CCATTTGGGCTAACATATGACTAACT 59.227 38.462 10.38 0.00 33.41 2.24
2623 3798 6.970484 CCATTTGGGCTAACATATGACTAAC 58.030 40.000 10.38 0.00 33.41 2.34
2647 3822 2.022934 AGTACGAGGGATCGAAAGTCC 58.977 52.381 4.44 0.00 36.85 3.85
2648 3823 2.795331 GCAGTACGAGGGATCGAAAGTC 60.795 54.545 4.44 0.00 36.85 3.01
2649 3824 1.134560 GCAGTACGAGGGATCGAAAGT 59.865 52.381 4.44 0.00 36.85 2.66
2650 3825 1.405821 AGCAGTACGAGGGATCGAAAG 59.594 52.381 4.44 0.00 36.85 2.62
2651 3826 1.134367 CAGCAGTACGAGGGATCGAAA 59.866 52.381 4.44 0.00 36.85 3.46
2652 3827 0.738975 CAGCAGTACGAGGGATCGAA 59.261 55.000 4.44 0.00 36.85 3.71
2653 3828 0.393944 ACAGCAGTACGAGGGATCGA 60.394 55.000 4.44 0.00 36.85 3.59
2654 3829 0.456221 AACAGCAGTACGAGGGATCG 59.544 55.000 0.00 0.00 39.31 3.69
2655 3830 2.271800 CAAACAGCAGTACGAGGGATC 58.728 52.381 0.00 0.00 0.00 3.36
2656 3831 1.066143 CCAAACAGCAGTACGAGGGAT 60.066 52.381 0.00 0.00 0.00 3.85
2657 3832 0.320374 CCAAACAGCAGTACGAGGGA 59.680 55.000 0.00 0.00 0.00 4.20
2658 3833 0.034896 ACCAAACAGCAGTACGAGGG 59.965 55.000 0.00 0.00 0.00 4.30
2659 3834 1.531149 CAACCAAACAGCAGTACGAGG 59.469 52.381 0.00 0.00 0.00 4.63
2660 3835 1.069906 GCAACCAAACAGCAGTACGAG 60.070 52.381 0.00 0.00 0.00 4.18
2661 3836 0.941542 GCAACCAAACAGCAGTACGA 59.058 50.000 0.00 0.00 0.00 3.43
2662 3837 0.384230 CGCAACCAAACAGCAGTACG 60.384 55.000 0.00 0.00 0.00 3.67
2663 3838 0.040425 CCGCAACCAAACAGCAGTAC 60.040 55.000 0.00 0.00 0.00 2.73
2664 3839 0.179043 TCCGCAACCAAACAGCAGTA 60.179 50.000 0.00 0.00 0.00 2.74
2665 3840 1.034838 TTCCGCAACCAAACAGCAGT 61.035 50.000 0.00 0.00 0.00 4.40
2666 3841 0.594796 GTTCCGCAACCAAACAGCAG 60.595 55.000 0.00 0.00 0.00 4.24
2667 3842 1.435515 GTTCCGCAACCAAACAGCA 59.564 52.632 0.00 0.00 0.00 4.41
2668 3843 1.657181 CGTTCCGCAACCAAACAGC 60.657 57.895 0.00 0.00 0.00 4.40
2669 3844 1.008995 CCGTTCCGCAACCAAACAG 60.009 57.895 0.00 0.00 0.00 3.16
2670 3845 1.451567 TCCGTTCCGCAACCAAACA 60.452 52.632 0.00 0.00 0.00 2.83
2671 3846 1.009335 GTCCGTTCCGCAACCAAAC 60.009 57.895 0.00 0.00 0.00 2.93
2672 3847 2.188161 GGTCCGTTCCGCAACCAAA 61.188 57.895 0.00 0.00 33.48 3.28
2673 3848 2.592287 GGTCCGTTCCGCAACCAA 60.592 61.111 0.00 0.00 33.48 3.67
2674 3849 3.552384 AGGTCCGTTCCGCAACCA 61.552 61.111 8.47 0.00 34.93 3.67
2675 3850 2.798148 ATCAGGTCCGTTCCGCAACC 62.798 60.000 0.00 0.00 33.46 3.77
2676 3851 1.375523 ATCAGGTCCGTTCCGCAAC 60.376 57.895 0.00 0.00 0.00 4.17
2677 3852 1.375396 CATCAGGTCCGTTCCGCAA 60.375 57.895 0.00 0.00 0.00 4.85
2678 3853 2.225791 CTCATCAGGTCCGTTCCGCA 62.226 60.000 0.00 0.00 0.00 5.69
2679 3854 1.519455 CTCATCAGGTCCGTTCCGC 60.519 63.158 0.00 0.00 0.00 5.54
2680 3855 0.747255 ATCTCATCAGGTCCGTTCCG 59.253 55.000 0.00 0.00 0.00 4.30
2681 3856 2.555199 CAATCTCATCAGGTCCGTTCC 58.445 52.381 0.00 0.00 0.00 3.62
2682 3857 2.093447 ACCAATCTCATCAGGTCCGTTC 60.093 50.000 0.00 0.00 0.00 3.95
2683 3858 1.909302 ACCAATCTCATCAGGTCCGTT 59.091 47.619 0.00 0.00 0.00 4.44
2684 3859 1.573108 ACCAATCTCATCAGGTCCGT 58.427 50.000 0.00 0.00 0.00 4.69
2685 3860 2.224066 GGTACCAATCTCATCAGGTCCG 60.224 54.545 7.15 0.00 35.62 4.79
2686 3861 3.041946 AGGTACCAATCTCATCAGGTCC 58.958 50.000 15.94 0.00 35.62 4.46
2687 3862 4.762289 AAGGTACCAATCTCATCAGGTC 57.238 45.455 15.94 0.00 35.62 3.85
2688 3863 5.455326 GCATAAGGTACCAATCTCATCAGGT 60.455 44.000 15.94 0.00 38.14 4.00
2689 3864 4.999950 GCATAAGGTACCAATCTCATCAGG 59.000 45.833 15.94 0.00 0.00 3.86
2690 3865 4.999950 GGCATAAGGTACCAATCTCATCAG 59.000 45.833 15.94 0.00 0.00 2.90
2691 3866 4.411869 TGGCATAAGGTACCAATCTCATCA 59.588 41.667 15.94 0.00 0.00 3.07
2692 3867 4.973168 TGGCATAAGGTACCAATCTCATC 58.027 43.478 15.94 0.00 0.00 2.92
2693 3868 4.413520 ACTGGCATAAGGTACCAATCTCAT 59.586 41.667 15.94 0.00 31.81 2.90
2694 3869 3.780294 ACTGGCATAAGGTACCAATCTCA 59.220 43.478 15.94 4.33 31.81 3.27
2695 3870 4.423625 ACTGGCATAAGGTACCAATCTC 57.576 45.455 15.94 0.00 31.81 2.75
2696 3871 4.348168 CCTACTGGCATAAGGTACCAATCT 59.652 45.833 15.94 0.00 31.81 2.40
2697 3872 4.347000 TCCTACTGGCATAAGGTACCAATC 59.653 45.833 15.94 0.00 31.81 2.67
2698 3873 4.303794 TCCTACTGGCATAAGGTACCAAT 58.696 43.478 15.94 4.15 31.81 3.16
2699 3874 3.726790 TCCTACTGGCATAAGGTACCAA 58.273 45.455 15.94 1.42 31.81 3.67
2700 3875 3.408157 TCCTACTGGCATAAGGTACCA 57.592 47.619 15.94 0.00 0.00 3.25
2701 3876 4.505039 CCAATCCTACTGGCATAAGGTACC 60.505 50.000 2.73 2.73 0.00 3.34
2702 3877 4.347000 TCCAATCCTACTGGCATAAGGTAC 59.653 45.833 13.27 0.00 33.63 3.34
2703 3878 4.562767 TCCAATCCTACTGGCATAAGGTA 58.437 43.478 13.27 0.47 33.63 3.08
2704 3879 3.393687 TCCAATCCTACTGGCATAAGGT 58.606 45.455 13.27 0.00 33.63 3.50
2705 3880 4.437682 TTCCAATCCTACTGGCATAAGG 57.562 45.455 8.59 8.59 33.63 2.69
2706 3881 5.624159 TCATTCCAATCCTACTGGCATAAG 58.376 41.667 0.00 0.00 33.63 1.73
2707 3882 5.624159 CTCATTCCAATCCTACTGGCATAA 58.376 41.667 0.00 0.00 33.63 1.90
2708 3883 4.505566 GCTCATTCCAATCCTACTGGCATA 60.506 45.833 0.00 0.00 33.63 3.14
2709 3884 3.749954 GCTCATTCCAATCCTACTGGCAT 60.750 47.826 0.00 0.00 33.63 4.40
2710 3885 2.421952 GCTCATTCCAATCCTACTGGCA 60.422 50.000 0.00 0.00 33.63 4.92
2711 3886 2.158696 AGCTCATTCCAATCCTACTGGC 60.159 50.000 0.00 0.00 33.63 4.85
2712 3887 3.853355 AGCTCATTCCAATCCTACTGG 57.147 47.619 0.00 0.00 35.05 4.00
2713 3888 4.503991 GGGTAGCTCATTCCAATCCTACTG 60.504 50.000 0.00 0.00 0.00 2.74
2714 3889 3.648545 GGGTAGCTCATTCCAATCCTACT 59.351 47.826 0.00 0.00 0.00 2.57
2715 3890 3.648545 AGGGTAGCTCATTCCAATCCTAC 59.351 47.826 0.00 0.00 0.00 3.18
2716 3891 3.648067 CAGGGTAGCTCATTCCAATCCTA 59.352 47.826 0.00 0.00 0.00 2.94
2717 3892 2.441001 CAGGGTAGCTCATTCCAATCCT 59.559 50.000 0.00 0.00 0.00 3.24
2718 3893 2.439507 TCAGGGTAGCTCATTCCAATCC 59.560 50.000 0.00 0.00 0.00 3.01
2719 3894 3.845781 TCAGGGTAGCTCATTCCAATC 57.154 47.619 0.00 0.00 0.00 2.67
2720 3895 4.803329 AATCAGGGTAGCTCATTCCAAT 57.197 40.909 0.00 0.00 0.00 3.16
2721 3896 5.708736 TTAATCAGGGTAGCTCATTCCAA 57.291 39.130 0.00 0.00 0.00 3.53
2722 3897 5.912149 ATTAATCAGGGTAGCTCATTCCA 57.088 39.130 0.00 0.00 0.00 3.53
2723 3898 6.769512 TGTATTAATCAGGGTAGCTCATTCC 58.230 40.000 0.00 0.00 0.00 3.01
2724 3899 8.854614 ATTGTATTAATCAGGGTAGCTCATTC 57.145 34.615 0.00 0.00 0.00 2.67
2725 3900 7.885399 GGATTGTATTAATCAGGGTAGCTCATT 59.115 37.037 0.00 0.00 0.00 2.57
2726 3901 7.238514 AGGATTGTATTAATCAGGGTAGCTCAT 59.761 37.037 0.00 0.00 0.00 2.90
2727 3902 6.558775 AGGATTGTATTAATCAGGGTAGCTCA 59.441 38.462 0.00 0.00 0.00 4.26
2728 3903 7.010339 AGGATTGTATTAATCAGGGTAGCTC 57.990 40.000 0.00 0.00 0.00 4.09
2729 3904 7.394144 AAGGATTGTATTAATCAGGGTAGCT 57.606 36.000 0.00 0.00 0.00 3.32
2730 3905 7.175119 GGAAAGGATTGTATTAATCAGGGTAGC 59.825 40.741 0.00 0.00 0.00 3.58
2731 3906 8.217799 TGGAAAGGATTGTATTAATCAGGGTAG 58.782 37.037 0.00 0.00 0.00 3.18
2732 3907 8.108378 TGGAAAGGATTGTATTAATCAGGGTA 57.892 34.615 0.00 0.00 0.00 3.69
2733 3908 6.980577 TGGAAAGGATTGTATTAATCAGGGT 58.019 36.000 0.00 0.00 0.00 4.34
2734 3909 8.482852 AATGGAAAGGATTGTATTAATCAGGG 57.517 34.615 0.00 0.00 0.00 4.45
2735 3910 9.135189 TGAATGGAAAGGATTGTATTAATCAGG 57.865 33.333 0.00 0.00 0.00 3.86
2736 3911 9.956720 GTGAATGGAAAGGATTGTATTAATCAG 57.043 33.333 0.00 0.00 0.00 2.90
2737 3912 9.473007 TGTGAATGGAAAGGATTGTATTAATCA 57.527 29.630 0.00 0.00 0.00 2.57
2768 3943 5.278808 GCCAAGGGAAGAACGTTATCTTTTT 60.279 40.000 0.00 0.00 39.70 1.94
2769 3944 4.217767 GCCAAGGGAAGAACGTTATCTTTT 59.782 41.667 0.00 0.00 39.70 2.27
2770 3945 3.756963 GCCAAGGGAAGAACGTTATCTTT 59.243 43.478 0.00 0.12 39.70 2.52
2771 3946 3.344515 GCCAAGGGAAGAACGTTATCTT 58.655 45.455 0.00 0.41 42.24 2.40
2772 3947 2.677037 CGCCAAGGGAAGAACGTTATCT 60.677 50.000 0.00 0.00 0.00 1.98
2851 4026 2.726351 GCTTCTAGCCACCCTCGCT 61.726 63.158 0.00 0.00 40.45 4.93
2867 4042 2.592308 GAAATGGAGAGCCCCGCT 59.408 61.111 0.00 0.00 43.88 5.52
2869 4044 1.078426 AACGAAATGGAGAGCCCCG 60.078 57.895 0.00 0.00 0.00 5.73
2876 4051 2.604914 CCTCGATGTCAACGAAATGGAG 59.395 50.000 6.65 0.50 39.23 3.86
2881 4056 1.011968 CGGCCTCGATGTCAACGAAA 61.012 55.000 6.65 0.00 39.23 3.46
2885 4060 2.511600 CCCGGCCTCGATGTCAAC 60.512 66.667 0.00 0.00 39.00 3.18
2887 4062 4.770362 TCCCCGGCCTCGATGTCA 62.770 66.667 0.00 0.00 39.00 3.58
2937 4113 0.183731 ATCTTTCCCGCTCAATCCCC 59.816 55.000 0.00 0.00 0.00 4.81
2941 4117 1.683011 CCCACATCTTTCCCGCTCAAT 60.683 52.381 0.00 0.00 0.00 2.57
2947 4123 0.609131 ACTTGCCCACATCTTTCCCG 60.609 55.000 0.00 0.00 0.00 5.14
3030 4206 3.590182 CCCCCTAAAACTTTCCCTCACTA 59.410 47.826 0.00 0.00 0.00 2.74
3051 4230 8.504815 GTTTAGTTCCTCAAGTATGACTTTTCC 58.495 37.037 0.00 0.00 36.03 3.13
3052 4231 9.274206 AGTTTAGTTCCTCAAGTATGACTTTTC 57.726 33.333 0.00 0.00 36.03 2.29
3117 4296 9.560860 AAGTTATATTTGAGGGGGAAATTTTCT 57.439 29.630 8.93 0.00 0.00 2.52
3156 4416 5.303078 TCAGTAAAGCTTAGGGCATCTCTAG 59.697 44.000 0.00 0.00 44.79 2.43
3186 4446 5.765182 CCACCTGAAAAGACATAAGTTGAGT 59.235 40.000 0.00 0.00 0.00 3.41
3248 4508 0.250234 CGTCAATCCCAGCTTCCTCA 59.750 55.000 0.00 0.00 0.00 3.86
3331 4591 2.289631 TGCCTTGCCTATGACCATATCG 60.290 50.000 0.00 0.00 0.00 2.92
3453 7081 9.467258 TTCTCTTCATGTTCAATGAAATGAAAC 57.533 29.630 21.74 4.92 40.76 2.78
3470 7098 8.362464 TGTACTTGTACCTGTATTCTCTTCAT 57.638 34.615 8.25 0.00 0.00 2.57
3471 7099 7.770366 TGTACTTGTACCTGTATTCTCTTCA 57.230 36.000 8.25 0.00 0.00 3.02
3489 7117 0.693049 CCTGCTGGGAGGTTGTACTT 59.307 55.000 0.71 0.00 37.23 2.24
3490 7118 0.178903 TCCTGCTGGGAGGTTGTACT 60.179 55.000 10.07 0.00 39.58 2.73
3491 7119 2.372852 TCCTGCTGGGAGGTTGTAC 58.627 57.895 10.07 0.00 39.58 2.90
3492 7120 4.989458 TCCTGCTGGGAGGTTGTA 57.011 55.556 10.07 0.00 39.58 2.41
3732 7360 8.714179 CCACGTTCAGTATTTCAGTTATGTTTA 58.286 33.333 0.00 0.00 0.00 2.01
3785 7413 9.344772 ACAGAGTATTAGAGATACACCTTACTG 57.655 37.037 0.00 0.00 0.00 2.74
3786 7414 9.924010 AACAGAGTATTAGAGATACACCTTACT 57.076 33.333 0.00 0.00 0.00 2.24
3791 7419 9.465985 GCTAAAACAGAGTATTAGAGATACACC 57.534 37.037 0.00 0.00 0.00 4.16
3792 7420 9.171701 CGCTAAAACAGAGTATTAGAGATACAC 57.828 37.037 0.00 0.00 30.86 2.90
3793 7421 8.350722 CCGCTAAAACAGAGTATTAGAGATACA 58.649 37.037 0.00 0.00 30.86 2.29
3794 7422 8.566260 TCCGCTAAAACAGAGTATTAGAGATAC 58.434 37.037 0.00 0.00 30.86 2.24
3795 7423 8.687292 TCCGCTAAAACAGAGTATTAGAGATA 57.313 34.615 0.00 0.00 30.86 1.98
3863 7491 5.607119 ATTGTGTGGTCGTGTAATTTCTC 57.393 39.130 0.00 0.00 0.00 2.87
3916 7545 2.773487 TGGGTGGTTTAACTGATGACG 58.227 47.619 0.00 0.00 0.00 4.35
3978 7607 2.835027 TCACATGCATCTCTCATCTGC 58.165 47.619 0.00 0.00 36.45 4.26
4005 7634 6.098409 GGGAAGTCCAGTCTGATATTTCACTA 59.902 42.308 0.00 0.00 37.91 2.74
4185 7816 1.263356 TCTGTTCAGGAAGGTACCGG 58.737 55.000 6.18 0.00 34.73 5.28
4186 7817 2.496070 TCATCTGTTCAGGAAGGTACCG 59.504 50.000 6.18 0.00 34.73 4.02
4187 7818 4.762289 ATCATCTGTTCAGGAAGGTACC 57.238 45.455 2.73 2.73 0.00 3.34
4188 7819 5.814705 CAGAATCATCTGTTCAGGAAGGTAC 59.185 44.000 0.00 0.00 46.60 3.34
4189 7820 5.982356 CAGAATCATCTGTTCAGGAAGGTA 58.018 41.667 0.00 0.00 46.60 3.08
4190 7821 4.841422 CAGAATCATCTGTTCAGGAAGGT 58.159 43.478 0.00 0.00 46.60 3.50
4208 7839 9.710818 ACTCACCTAGTTATAACTATTCCAGAA 57.289 33.333 22.51 3.48 40.46 3.02
4209 7840 9.132923 CACTCACCTAGTTATAACTATTCCAGA 57.867 37.037 22.51 15.33 40.46 3.86
4210 7841 9.132923 TCACTCACCTAGTTATAACTATTCCAG 57.867 37.037 22.51 17.75 40.46 3.86
4211 7842 9.483489 TTCACTCACCTAGTTATAACTATTCCA 57.517 33.333 22.51 5.48 40.46 3.53
4256 7887 2.614057 CAAGATGACCGGCAAATCTACC 59.386 50.000 12.95 0.00 30.50 3.18
4267 7898 2.480416 GGCAGAGTAGACAAGATGACCG 60.480 54.545 0.00 0.00 0.00 4.79
4380 8011 5.796935 CGAAGTGCATAACAAGAAAGGAATG 59.203 40.000 0.00 0.00 0.00 2.67
4382 8013 5.049680 GTCGAAGTGCATAACAAGAAAGGAA 60.050 40.000 0.00 0.00 0.00 3.36
4628 8548 5.070580 AGCAGTGTACCATAACCCTATTCTC 59.929 44.000 0.00 0.00 0.00 2.87
4637 8557 7.549488 AGTTGAATAAGAGCAGTGTACCATAAC 59.451 37.037 0.00 0.00 0.00 1.89
4960 8881 9.645059 TTTGAAGATTGAACAACACATACAAAA 57.355 25.926 0.00 0.00 0.00 2.44
5074 8995 8.534778 GTTTTATGCAGTGTTACCGTAGTATAC 58.465 37.037 0.00 0.00 38.50 1.47
5075 8996 7.706179 GGTTTTATGCAGTGTTACCGTAGTATA 59.294 37.037 0.00 0.00 0.00 1.47
5076 8997 6.536224 GGTTTTATGCAGTGTTACCGTAGTAT 59.464 38.462 0.00 0.00 0.00 2.12
5083 9004 3.833442 GCAGGTTTTATGCAGTGTTACC 58.167 45.455 0.00 0.00 43.31 2.85
5269 9191 3.382546 GCTAAAATGTGTCATGGCCTCAT 59.617 43.478 3.32 0.00 0.00 2.90
5431 9353 2.016604 GCACGGGGATATTGCACAAGA 61.017 52.381 0.00 0.00 36.22 3.02
5523 9445 4.451900 TCAGGACAAGACCAAAAGTTCTC 58.548 43.478 0.00 0.00 0.00 2.87
5525 9447 6.710744 TCTTATCAGGACAAGACCAAAAGTTC 59.289 38.462 0.00 0.00 0.00 3.01
5813 9735 8.316640 ACAGATGTCAGTTTCTTCAGTAATTC 57.683 34.615 0.00 0.00 0.00 2.17
6192 10195 2.816601 ATCTCTGTGCACAGCCCTGC 62.817 60.000 36.76 0.31 43.46 4.85
6239 10242 4.013728 AGCACTGTTTTACCACTTGACAA 58.986 39.130 0.00 0.00 0.00 3.18
6321 10324 2.394930 AACCAAACCAAACCAAGCAC 57.605 45.000 0.00 0.00 0.00 4.40
6343 10346 2.896801 CTGCCTGCCACACGAACAC 61.897 63.158 0.00 0.00 0.00 3.32
6489 10492 1.180029 GCCAGGAACATGTTGCATCT 58.820 50.000 28.72 8.56 33.04 2.90
6504 10507 0.679002 CTCCCATGGTGAACAGCCAG 60.679 60.000 11.73 0.00 39.65 4.85
6512 10515 1.200760 CCAGTCCACTCCCATGGTGA 61.201 60.000 11.73 6.87 40.95 4.02
6531 10534 7.624974 GCACCATATACAGTATCATGCATGTTC 60.625 40.741 25.43 16.17 0.00 3.18
6545 10548 3.802139 CACTTGTACCGCACCATATACAG 59.198 47.826 0.00 0.00 0.00 2.74
6546 10549 3.196039 ACACTTGTACCGCACCATATACA 59.804 43.478 0.00 0.00 0.00 2.29
6547 10550 3.788937 ACACTTGTACCGCACCATATAC 58.211 45.455 0.00 0.00 0.00 1.47
6548 10551 3.447944 TGACACTTGTACCGCACCATATA 59.552 43.478 0.00 0.00 0.00 0.86
6549 10552 2.235155 TGACACTTGTACCGCACCATAT 59.765 45.455 0.00 0.00 0.00 1.78
6589 10592 6.237901 ACCAAACATACATATATGGCATCGT 58.762 36.000 16.96 0.00 42.32 3.73
6630 10633 7.738437 ACAAATCAGGAAATTCCCACATAAT 57.262 32.000 8.66 0.00 37.19 1.28
6632 10635 7.893302 ACTAACAAATCAGGAAATTCCCACATA 59.107 33.333 8.66 0.00 37.19 2.29
6672 10675 5.570262 CACATATGTGCTGCATAAATTGC 57.430 39.130 22.27 0.00 44.56 3.56
6714 10717 8.648557 TTCGAGATATAGTGACCAAATTCTTG 57.351 34.615 0.00 0.00 0.00 3.02
6725 10728 5.758296 GGCCAATTGTTTCGAGATATAGTGA 59.242 40.000 4.43 0.00 0.00 3.41
6743 10746 2.496899 ATCGTCAGAAAGTGGCCAAT 57.503 45.000 7.24 1.65 0.00 3.16
6751 10754 9.360093 GGGTATCTATATGAAATCGTCAGAAAG 57.640 37.037 0.00 0.00 40.43 2.62
6762 10765 9.837681 TGAGGATTACTGGGTATCTATATGAAA 57.162 33.333 0.00 0.00 0.00 2.69
6767 10770 6.500336 GGGTGAGGATTACTGGGTATCTATA 58.500 44.000 0.00 0.00 0.00 1.31
6812 10815 2.693074 ACAAGGTGGAATTGTTGGTGTC 59.307 45.455 0.00 0.00 37.61 3.67
6889 10981 8.497910 AATTGATACCCTGCTTCTCTTCTATA 57.502 34.615 0.00 0.00 0.00 1.31
6925 11017 2.330231 ATTGTTCGCATGTTTCCGTG 57.670 45.000 0.00 0.00 0.00 4.94
6948 11040 2.258286 GTGTGGGTGAATTGCGGC 59.742 61.111 0.00 0.00 0.00 6.53
7045 13172 0.615331 ACATGCAACGATCTGTCCCT 59.385 50.000 0.00 0.00 0.00 4.20
7059 13186 1.804151 TGTTCGCTAACCTCAACATGC 59.196 47.619 0.00 0.00 34.49 4.06
7154 13282 3.866651 AGGTGCAGAATAACTAGTGCTG 58.133 45.455 0.00 3.65 36.84 4.41
7186 13314 4.463050 TTCCCTGGTTATTGTGTTCCTT 57.537 40.909 0.00 0.00 0.00 3.36
7209 13337 5.425862 AGAATAACTAGGGACAGAGGGTTTC 59.574 44.000 0.00 0.00 0.00 2.78
7301 13430 4.317530 TTCTTAGCTGGAGAGTAGTCCA 57.682 45.455 0.00 0.00 44.82 4.02



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.