Multiple sequence alignment - TraesCS1D01G145200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G145200 chr1D 100.000 2165 0 0 1 2165 200553090 200550926 0.000000e+00 3999
1 TraesCS1D01G145200 chr1D 97.248 109 3 0 1980 2088 141288986 141289094 3.670000e-43 185
2 TraesCS1D01G145200 chr1D 98.701 77 1 0 2087 2163 43231941 43232017 1.040000e-28 137
3 TraesCS1D01G145200 chr1D 98.701 77 1 0 2087 2163 185774171 185774095 1.040000e-28 137
4 TraesCS1D01G145200 chr5A 95.769 1560 36 9 1 1532 482021813 482023370 0.000000e+00 2488
5 TraesCS1D01G145200 chr3D 95.419 1550 50 13 1 1532 589250400 589248854 0.000000e+00 2449
6 TraesCS1D01G145200 chr3D 95.220 1025 35 11 519 1532 158932532 158931511 0.000000e+00 1609
7 TraesCS1D01G145200 chr3D 95.010 982 34 14 564 1532 158938604 158937625 0.000000e+00 1528
8 TraesCS1D01G145200 chr3D 95.833 816 12 7 1 796 158939430 158938617 0.000000e+00 1299
9 TraesCS1D01G145200 chr3D 83.945 218 21 10 1541 1750 292444689 292444478 1.700000e-46 196
10 TraesCS1D01G145200 chr3D 98.113 106 2 0 1983 2088 602850814 602850709 3.670000e-43 185
11 TraesCS1D01G145200 chr1A 94.089 1455 58 12 1 1436 371942329 371940884 0.000000e+00 2185
12 TraesCS1D01G145200 chr1A 86.777 242 21 2 1746 1976 223479546 223479305 2.130000e-65 259
13 TraesCS1D01G145200 chr1A 85.714 210 24 4 1543 1747 423657904 423658112 1.300000e-52 217
14 TraesCS1D01G145200 chr1A 93.458 107 5 2 1427 1532 371940469 371940364 8.000000e-35 158
15 TraesCS1D01G145200 chr2D 95.297 1382 31 11 1 1367 591995474 591996836 0.000000e+00 2161
16 TraesCS1D01G145200 chr5B 95.940 1207 38 8 333 1532 429065123 429063921 0.000000e+00 1947
17 TraesCS1D01G145200 chr5B 85.938 192 25 2 1561 1750 243092907 243092716 1.010000e-48 204
18 TraesCS1D01G145200 chr6D 93.445 1312 58 20 2 1301 431006356 431005061 0.000000e+00 1921
19 TraesCS1D01G145200 chr6D 98.701 77 1 0 2087 2163 168760664 168760588 1.040000e-28 137
20 TraesCS1D01G145200 chr6D 98.701 77 1 0 2087 2163 458902959 458902883 1.040000e-28 137
21 TraesCS1D01G145200 chr7B 94.991 1058 46 7 480 1532 105212551 105211496 0.000000e+00 1653
22 TraesCS1D01G145200 chr7B 87.137 241 22 3 1746 1977 574464331 574464091 4.580000e-67 265
23 TraesCS1D01G145200 chr7B 86.475 244 23 1 1744 1977 15479613 15479856 2.130000e-65 259
24 TraesCS1D01G145200 chr7B 86.364 242 23 1 1746 1977 724727357 724727598 2.760000e-64 255
25 TraesCS1D01G145200 chr7B 90.196 153 15 0 1745 1897 15479449 15479601 1.310000e-47 200
26 TraesCS1D01G145200 chr7B 84.466 206 22 8 1547 1750 544103485 544103288 6.100000e-46 195
27 TraesCS1D01G145200 chr3B 96.515 947 29 3 590 1532 201553833 201554779 0.000000e+00 1563
28 TraesCS1D01G145200 chr5D 94.942 949 34 9 594 1532 523037748 523036804 0.000000e+00 1474
29 TraesCS1D01G145200 chr5D 97.248 109 3 0 1980 2088 528298319 528298427 3.670000e-43 185
30 TraesCS1D01G145200 chrUn 93.255 1023 25 16 1 991 341019009 341020019 0.000000e+00 1467
31 TraesCS1D01G145200 chrUn 94.363 816 17 7 1 796 355920237 355921043 0.000000e+00 1225
32 TraesCS1D01G145200 chrUn 95.376 692 16 6 1 684 362350683 362351366 0.000000e+00 1086
33 TraesCS1D01G145200 chrUn 87.550 249 20 2 1746 1984 75923157 75922910 5.890000e-71 278
34 TraesCS1D01G145200 chrUn 97.248 109 3 0 1980 2088 171037844 171037952 3.670000e-43 185
35 TraesCS1D01G145200 chrUn 97.248 109 3 0 1980 2088 374273470 374273578 3.670000e-43 185
36 TraesCS1D01G145200 chrUn 97.248 109 3 0 1980 2088 414975001 414975109 3.670000e-43 185
37 TraesCS1D01G145200 chrUn 98.701 77 1 0 2087 2163 171048503 171048427 1.040000e-28 137
38 TraesCS1D01G145200 chrUn 98.701 77 1 0 2087 2163 189397258 189397182 1.040000e-28 137
39 TraesCS1D01G145200 chrUn 98.701 77 1 0 2087 2163 452445978 452446054 1.040000e-28 137
40 TraesCS1D01G145200 chr1B 87.952 249 20 1 1746 1984 685941620 685941868 3.520000e-73 285
41 TraesCS1D01G145200 chr1B 86.508 252 23 2 1746 1986 686277865 686278116 1.270000e-67 267
42 TraesCS1D01G145200 chr1B 83.962 212 22 10 1540 1747 270911948 270912151 2.190000e-45 193
43 TraesCS1D01G145200 chr6B 87.149 249 21 2 1746 1984 9987599 9987846 2.740000e-69 272
44 TraesCS1D01G145200 chr6B 99.029 103 1 0 1986 2088 388162701 388162599 3.670000e-43 185
45 TraesCS1D01G145200 chr6A 86.454 251 24 1 1746 1986 432822123 432822373 1.270000e-67 267
46 TraesCS1D01G145200 chr6A 98.701 77 1 0 2087 2163 289133347 289133271 1.040000e-28 137
47 TraesCS1D01G145200 chr4B 86.957 207 20 6 1543 1747 659770283 659770484 2.160000e-55 226
48 TraesCS1D01G145200 chr4B 97.248 109 3 0 1980 2088 209314382 209314490 3.670000e-43 185
49 TraesCS1D01G145200 chr3A 86.190 210 22 6 1543 1750 469797146 469796942 1.010000e-53 220
50 TraesCS1D01G145200 chr3A 84.091 220 28 6 1543 1761 385260454 385260667 2.820000e-49 206
51 TraesCS1D01G145200 chr7D 84.729 203 20 10 1550 1750 512062623 512062430 2.190000e-45 193
52 TraesCS1D01G145200 chr7D 98.113 106 2 0 1983 2088 381943421 381943316 3.670000e-43 185
53 TraesCS1D01G145200 chr7D 94.286 70 2 2 1464 1532 231564937 231564869 2.940000e-19 106
54 TraesCS1D01G145200 chr4D 98.701 77 1 0 2087 2163 134994088 134994164 1.040000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G145200 chr1D 200550926 200553090 2164 True 3999.0 3999 100.0000 1 2165 1 chr1D.!!$R2 2164
1 TraesCS1D01G145200 chr5A 482021813 482023370 1557 False 2488.0 2488 95.7690 1 1532 1 chr5A.!!$F1 1531
2 TraesCS1D01G145200 chr3D 589248854 589250400 1546 True 2449.0 2449 95.4190 1 1532 1 chr3D.!!$R3 1531
3 TraesCS1D01G145200 chr3D 158931511 158932532 1021 True 1609.0 1609 95.2200 519 1532 1 chr3D.!!$R1 1013
4 TraesCS1D01G145200 chr3D 158937625 158939430 1805 True 1413.5 1528 95.4215 1 1532 2 chr3D.!!$R5 1531
5 TraesCS1D01G145200 chr1A 371940364 371942329 1965 True 1171.5 2185 93.7735 1 1532 2 chr1A.!!$R2 1531
6 TraesCS1D01G145200 chr2D 591995474 591996836 1362 False 2161.0 2161 95.2970 1 1367 1 chr2D.!!$F1 1366
7 TraesCS1D01G145200 chr5B 429063921 429065123 1202 True 1947.0 1947 95.9400 333 1532 1 chr5B.!!$R2 1199
8 TraesCS1D01G145200 chr6D 431005061 431006356 1295 True 1921.0 1921 93.4450 2 1301 1 chr6D.!!$R2 1299
9 TraesCS1D01G145200 chr7B 105211496 105212551 1055 True 1653.0 1653 94.9910 480 1532 1 chr7B.!!$R1 1052
10 TraesCS1D01G145200 chr3B 201553833 201554779 946 False 1563.0 1563 96.5150 590 1532 1 chr3B.!!$F1 942
11 TraesCS1D01G145200 chr5D 523036804 523037748 944 True 1474.0 1474 94.9420 594 1532 1 chr5D.!!$R1 938
12 TraesCS1D01G145200 chrUn 341019009 341020019 1010 False 1467.0 1467 93.2550 1 991 1 chrUn.!!$F2 990
13 TraesCS1D01G145200 chrUn 355920237 355921043 806 False 1225.0 1225 94.3630 1 796 1 chrUn.!!$F3 795
14 TraesCS1D01G145200 chrUn 362350683 362351366 683 False 1086.0 1086 95.3760 1 684 1 chrUn.!!$F4 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 7.201902 GCCAAATCCCATTGACATAATAACTGA 60.202 37.037 0.0 0.0 31.84 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 2578 0.033228 CCAAAAATGCACCAAGCCGA 59.967 50.0 0.0 0.0 44.83 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.201902 GCCAAATCCCATTGACATAATAACTGA 60.202 37.037 0.00 0.00 31.84 3.41
266 309 9.020731 AGTATGGGTTTAGTTGGTTAAATTCAG 57.979 33.333 0.00 0.00 0.00 3.02
840 1161 8.138365 TGTCTTATCCGTATTAGACAAAATGC 57.862 34.615 7.29 0.00 44.56 3.56
999 1325 3.285745 GCAGTTCCAAAAACGTACTTCG 58.714 45.455 0.00 0.00 46.00 3.79
1101 1427 1.665679 TCAAGATCATTTTCGAGCGGC 59.334 47.619 0.00 0.00 0.00 6.53
1445 2206 5.721232 AGGACTTACAACTTTCACCTATCG 58.279 41.667 0.00 0.00 0.00 2.92
1558 2321 5.970692 ATAATAAGTAGGACTCCTCCCCT 57.029 43.478 0.00 0.00 37.25 4.79
1559 2322 8.727339 ATATAATAAGTAGGACTCCTCCCCTA 57.273 38.462 0.00 0.00 37.25 3.53
1560 2323 5.342361 AATAAGTAGGACTCCTCCCCTAG 57.658 47.826 0.00 0.00 37.25 3.02
1561 2324 2.307032 AGTAGGACTCCTCCCCTAGT 57.693 55.000 0.00 0.00 37.25 2.57
1562 2325 2.137702 AGTAGGACTCCTCCCCTAGTC 58.862 57.143 0.00 0.00 41.16 2.59
1566 2329 2.480642 GACTCCTCCCCTAGTCCAAT 57.519 55.000 0.00 0.00 36.86 3.16
1567 2330 2.765502 GACTCCTCCCCTAGTCCAATT 58.234 52.381 0.00 0.00 36.86 2.32
1568 2331 2.701423 GACTCCTCCCCTAGTCCAATTC 59.299 54.545 0.00 0.00 36.86 2.17
1569 2332 1.689273 CTCCTCCCCTAGTCCAATTCG 59.311 57.143 0.00 0.00 0.00 3.34
1570 2333 0.106894 CCTCCCCTAGTCCAATTCGC 59.893 60.000 0.00 0.00 0.00 4.70
1571 2334 0.106894 CTCCCCTAGTCCAATTCGCC 59.893 60.000 0.00 0.00 0.00 5.54
1572 2335 1.148498 CCCCTAGTCCAATTCGCCC 59.852 63.158 0.00 0.00 0.00 6.13
1573 2336 1.148498 CCCTAGTCCAATTCGCCCC 59.852 63.158 0.00 0.00 0.00 5.80
1574 2337 1.227556 CCTAGTCCAATTCGCCCCG 60.228 63.158 0.00 0.00 0.00 5.73
1575 2338 1.887707 CTAGTCCAATTCGCCCCGC 60.888 63.158 0.00 0.00 0.00 6.13
1576 2339 3.394635 TAGTCCAATTCGCCCCGCC 62.395 63.158 0.00 0.00 0.00 6.13
1584 2347 4.954118 TCGCCCCGCCCTCCATAT 62.954 66.667 0.00 0.00 0.00 1.78
1585 2348 4.704833 CGCCCCGCCCTCCATATG 62.705 72.222 0.00 0.00 0.00 1.78
1586 2349 4.351054 GCCCCGCCCTCCATATGG 62.351 72.222 16.25 16.25 0.00 2.74
1587 2350 4.351054 CCCCGCCCTCCATATGGC 62.351 72.222 17.58 4.19 44.41 4.40
1592 2355 1.228675 GCCCTCCATATGGCAAGGG 60.229 63.158 31.67 31.67 46.84 3.95
1593 2356 1.462035 CCCTCCATATGGCAAGGGG 59.538 63.158 29.68 24.59 42.70 4.79
1594 2357 1.462035 CCTCCATATGGCAAGGGGG 59.538 63.158 17.58 8.30 36.56 5.40
1595 2358 1.363530 CCTCCATATGGCAAGGGGGT 61.364 60.000 17.58 0.00 38.32 4.95
1596 2359 0.178981 CTCCATATGGCAAGGGGGTG 60.179 60.000 17.58 0.00 34.44 4.61
1597 2360 1.833934 CCATATGGCAAGGGGGTGC 60.834 63.158 9.29 0.00 44.14 5.01
1603 2366 2.991540 GCAAGGGGGTGCCACTTC 60.992 66.667 0.00 0.00 45.20 3.01
1604 2367 2.283173 CAAGGGGGTGCCACTTCC 60.283 66.667 0.00 0.00 45.20 3.46
1605 2368 2.452491 AAGGGGGTGCCACTTCCT 60.452 61.111 0.00 0.00 45.20 3.36
1606 2369 2.091283 AAGGGGGTGCCACTTCCTT 61.091 57.895 13.68 13.68 45.20 3.36
1607 2370 0.774491 AAGGGGGTGCCACTTCCTTA 60.774 55.000 16.54 0.00 45.20 2.69
1608 2371 0.552615 AGGGGGTGCCACTTCCTTAT 60.553 55.000 0.00 0.00 29.82 1.73
1609 2372 0.395724 GGGGGTGCCACTTCCTTATG 60.396 60.000 0.00 0.00 0.00 1.90
1610 2373 0.623723 GGGGTGCCACTTCCTTATGA 59.376 55.000 0.00 0.00 0.00 2.15
1611 2374 1.408822 GGGGTGCCACTTCCTTATGAG 60.409 57.143 0.00 0.00 0.00 2.90
1612 2375 1.383523 GGTGCCACTTCCTTATGAGC 58.616 55.000 0.00 0.00 0.00 4.26
1613 2376 1.383523 GTGCCACTTCCTTATGAGCC 58.616 55.000 0.00 0.00 0.00 4.70
1614 2377 1.065126 GTGCCACTTCCTTATGAGCCT 60.065 52.381 0.00 0.00 0.00 4.58
1615 2378 1.635487 TGCCACTTCCTTATGAGCCTT 59.365 47.619 0.00 0.00 0.00 4.35
1616 2379 2.293170 GCCACTTCCTTATGAGCCTTC 58.707 52.381 0.00 0.00 0.00 3.46
1617 2380 2.555199 CCACTTCCTTATGAGCCTTCG 58.445 52.381 0.00 0.00 0.00 3.79
1618 2381 2.093447 CCACTTCCTTATGAGCCTTCGT 60.093 50.000 0.00 0.00 0.00 3.85
1619 2382 2.932614 CACTTCCTTATGAGCCTTCGTG 59.067 50.000 0.00 0.00 0.00 4.35
1620 2383 2.832129 ACTTCCTTATGAGCCTTCGTGA 59.168 45.455 0.00 0.00 0.00 4.35
1621 2384 2.961526 TCCTTATGAGCCTTCGTGAC 57.038 50.000 0.00 0.00 0.00 3.67
1622 2385 2.457598 TCCTTATGAGCCTTCGTGACT 58.542 47.619 0.00 0.00 0.00 3.41
1623 2386 2.427453 TCCTTATGAGCCTTCGTGACTC 59.573 50.000 0.00 0.00 0.00 3.36
1624 2387 2.166459 CCTTATGAGCCTTCGTGACTCA 59.834 50.000 0.00 0.00 44.06 3.41
1626 2389 4.038042 CCTTATGAGCCTTCGTGACTCATA 59.962 45.833 7.64 7.64 46.58 2.15
1628 2391 4.679373 ATGAGCCTTCGTGACTCATAAT 57.321 40.909 3.02 0.00 46.58 1.28
1629 2392 4.471904 TGAGCCTTCGTGACTCATAATT 57.528 40.909 0.00 0.00 35.58 1.40
1630 2393 4.433615 TGAGCCTTCGTGACTCATAATTC 58.566 43.478 0.00 0.00 35.58 2.17
1631 2394 3.798202 AGCCTTCGTGACTCATAATTCC 58.202 45.455 0.00 0.00 0.00 3.01
1632 2395 3.452627 AGCCTTCGTGACTCATAATTCCT 59.547 43.478 0.00 0.00 0.00 3.36
1633 2396 4.080863 AGCCTTCGTGACTCATAATTCCTT 60.081 41.667 0.00 0.00 0.00 3.36
1634 2397 4.271291 GCCTTCGTGACTCATAATTCCTTC 59.729 45.833 0.00 0.00 0.00 3.46
1635 2398 4.811557 CCTTCGTGACTCATAATTCCTTCC 59.188 45.833 0.00 0.00 0.00 3.46
1636 2399 5.414789 TTCGTGACTCATAATTCCTTCCA 57.585 39.130 0.00 0.00 0.00 3.53
1637 2400 4.755411 TCGTGACTCATAATTCCTTCCAC 58.245 43.478 0.00 0.00 0.00 4.02
1638 2401 3.871594 CGTGACTCATAATTCCTTCCACC 59.128 47.826 0.00 0.00 0.00 4.61
1639 2402 4.622933 CGTGACTCATAATTCCTTCCACCA 60.623 45.833 0.00 0.00 0.00 4.17
1640 2403 4.636206 GTGACTCATAATTCCTTCCACCAC 59.364 45.833 0.00 0.00 0.00 4.16
1641 2404 4.288366 TGACTCATAATTCCTTCCACCACA 59.712 41.667 0.00 0.00 0.00 4.17
1642 2405 5.044919 TGACTCATAATTCCTTCCACCACAT 60.045 40.000 0.00 0.00 0.00 3.21
1643 2406 5.195940 ACTCATAATTCCTTCCACCACATG 58.804 41.667 0.00 0.00 0.00 3.21
1654 2417 1.550072 CCACCACATGGCCTTTTTAGG 59.450 52.381 3.32 0.75 43.24 2.69
1743 2506 9.974980 TTTAACATCTCCAATAACTTTTTCACC 57.025 29.630 0.00 0.00 0.00 4.02
1744 2507 7.839680 AACATCTCCAATAACTTTTTCACCT 57.160 32.000 0.00 0.00 0.00 4.00
1745 2508 8.934023 AACATCTCCAATAACTTTTTCACCTA 57.066 30.769 0.00 0.00 0.00 3.08
1746 2509 9.533831 AACATCTCCAATAACTTTTTCACCTAT 57.466 29.630 0.00 0.00 0.00 2.57
1747 2510 9.533831 ACATCTCCAATAACTTTTTCACCTATT 57.466 29.630 0.00 0.00 0.00 1.73
1775 2538 9.331282 AGATACATTATAACTGAGCACTTTTCC 57.669 33.333 0.00 0.00 0.00 3.13
1776 2539 9.331282 GATACATTATAACTGAGCACTTTTCCT 57.669 33.333 0.00 0.00 0.00 3.36
1777 2540 7.383102 ACATTATAACTGAGCACTTTTCCTG 57.617 36.000 0.00 0.00 0.00 3.86
1778 2541 5.880054 TTATAACTGAGCACTTTTCCTGC 57.120 39.130 0.00 0.00 34.63 4.85
1779 2542 1.322442 AACTGAGCACTTTTCCTGCC 58.678 50.000 0.00 0.00 35.01 4.85
1780 2543 0.538287 ACTGAGCACTTTTCCTGCCC 60.538 55.000 0.00 0.00 35.01 5.36
1781 2544 0.251077 CTGAGCACTTTTCCTGCCCT 60.251 55.000 0.00 0.00 35.01 5.19
1782 2545 0.250901 TGAGCACTTTTCCTGCCCTC 60.251 55.000 0.00 0.00 35.01 4.30
1783 2546 0.037447 GAGCACTTTTCCTGCCCTCT 59.963 55.000 0.00 0.00 35.01 3.69
1784 2547 0.037447 AGCACTTTTCCTGCCCTCTC 59.963 55.000 0.00 0.00 35.01 3.20
1785 2548 0.250901 GCACTTTTCCTGCCCTCTCA 60.251 55.000 0.00 0.00 0.00 3.27
1786 2549 1.818642 CACTTTTCCTGCCCTCTCAG 58.181 55.000 0.00 0.00 0.00 3.35
1787 2550 1.349026 CACTTTTCCTGCCCTCTCAGA 59.651 52.381 0.00 0.00 36.19 3.27
1788 2551 1.349357 ACTTTTCCTGCCCTCTCAGAC 59.651 52.381 0.00 0.00 36.19 3.51
1789 2552 1.627834 CTTTTCCTGCCCTCTCAGACT 59.372 52.381 0.00 0.00 36.19 3.24
1790 2553 2.623418 TTTCCTGCCCTCTCAGACTA 57.377 50.000 0.00 0.00 36.19 2.59
1791 2554 2.856760 TTCCTGCCCTCTCAGACTAT 57.143 50.000 0.00 0.00 36.19 2.12
1792 2555 2.856760 TCCTGCCCTCTCAGACTATT 57.143 50.000 0.00 0.00 36.19 1.73
1793 2556 3.973472 TCCTGCCCTCTCAGACTATTA 57.027 47.619 0.00 0.00 36.19 0.98
1794 2557 3.838565 TCCTGCCCTCTCAGACTATTAG 58.161 50.000 0.00 0.00 36.19 1.73
1795 2558 3.205507 TCCTGCCCTCTCAGACTATTAGT 59.794 47.826 0.00 0.00 36.19 2.24
1796 2559 3.320541 CCTGCCCTCTCAGACTATTAGTG 59.679 52.174 0.00 0.00 36.19 2.74
1797 2560 3.957497 CTGCCCTCTCAGACTATTAGTGT 59.043 47.826 0.00 0.00 36.19 3.55
1798 2561 4.353777 TGCCCTCTCAGACTATTAGTGTT 58.646 43.478 0.00 0.00 0.00 3.32
1799 2562 4.777896 TGCCCTCTCAGACTATTAGTGTTT 59.222 41.667 0.00 0.00 0.00 2.83
1800 2563 5.248477 TGCCCTCTCAGACTATTAGTGTTTT 59.752 40.000 0.00 0.00 0.00 2.43
1801 2564 5.813157 GCCCTCTCAGACTATTAGTGTTTTC 59.187 44.000 0.00 0.00 0.00 2.29
1802 2565 6.574465 GCCCTCTCAGACTATTAGTGTTTTCA 60.574 42.308 0.00 0.00 0.00 2.69
1803 2566 7.386851 CCCTCTCAGACTATTAGTGTTTTCAA 58.613 38.462 0.00 0.00 0.00 2.69
1804 2567 7.332182 CCCTCTCAGACTATTAGTGTTTTCAAC 59.668 40.741 0.00 0.00 0.00 3.18
1805 2568 7.332182 CCTCTCAGACTATTAGTGTTTTCAACC 59.668 40.741 0.00 0.00 0.00 3.77
1806 2569 6.866770 TCTCAGACTATTAGTGTTTTCAACCG 59.133 38.462 0.00 0.00 0.00 4.44
1807 2570 6.518493 TCAGACTATTAGTGTTTTCAACCGT 58.482 36.000 0.00 0.00 0.00 4.83
1808 2571 6.643770 TCAGACTATTAGTGTTTTCAACCGTC 59.356 38.462 0.00 0.00 0.00 4.79
1809 2572 6.422701 CAGACTATTAGTGTTTTCAACCGTCA 59.577 38.462 0.00 0.00 0.00 4.35
1810 2573 6.645415 AGACTATTAGTGTTTTCAACCGTCAG 59.355 38.462 0.00 0.00 0.00 3.51
1811 2574 6.518493 ACTATTAGTGTTTTCAACCGTCAGA 58.482 36.000 0.00 0.00 0.00 3.27
1812 2575 7.159372 ACTATTAGTGTTTTCAACCGTCAGAT 58.841 34.615 0.00 0.00 0.00 2.90
1813 2576 8.308931 ACTATTAGTGTTTTCAACCGTCAGATA 58.691 33.333 0.00 0.00 0.00 1.98
1814 2577 7.972832 ATTAGTGTTTTCAACCGTCAGATAA 57.027 32.000 0.00 0.00 0.00 1.75
1815 2578 7.972832 TTAGTGTTTTCAACCGTCAGATAAT 57.027 32.000 0.00 0.00 0.00 1.28
1816 2579 6.481954 AGTGTTTTCAACCGTCAGATAATC 57.518 37.500 0.00 0.00 0.00 1.75
1817 2580 5.120208 AGTGTTTTCAACCGTCAGATAATCG 59.880 40.000 0.00 0.00 0.00 3.34
1819 2582 2.218953 TCAACCGTCAGATAATCGGC 57.781 50.000 2.72 0.00 46.92 5.54
1820 2583 1.754803 TCAACCGTCAGATAATCGGCT 59.245 47.619 2.72 0.00 46.92 5.52
1821 2584 2.167693 TCAACCGTCAGATAATCGGCTT 59.832 45.455 2.72 0.00 46.92 4.35
1822 2585 2.225068 ACCGTCAGATAATCGGCTTG 57.775 50.000 2.72 0.00 46.92 4.01
1823 2586 1.202533 ACCGTCAGATAATCGGCTTGG 60.203 52.381 2.72 0.00 46.92 3.61
1824 2587 1.202533 CCGTCAGATAATCGGCTTGGT 60.203 52.381 0.00 0.00 37.90 3.67
1825 2588 1.860950 CGTCAGATAATCGGCTTGGTG 59.139 52.381 0.00 0.00 0.00 4.17
1826 2589 1.599542 GTCAGATAATCGGCTTGGTGC 59.400 52.381 0.00 0.00 41.94 5.01
1827 2590 1.209261 TCAGATAATCGGCTTGGTGCA 59.791 47.619 0.00 0.00 45.15 4.57
1828 2591 2.158769 TCAGATAATCGGCTTGGTGCAT 60.159 45.455 0.00 0.00 45.15 3.96
1829 2592 2.620115 CAGATAATCGGCTTGGTGCATT 59.380 45.455 0.00 0.00 45.15 3.56
1830 2593 3.067180 CAGATAATCGGCTTGGTGCATTT 59.933 43.478 0.00 0.00 45.15 2.32
1831 2594 3.701040 AGATAATCGGCTTGGTGCATTTT 59.299 39.130 0.00 0.00 45.15 1.82
1832 2595 2.837532 AATCGGCTTGGTGCATTTTT 57.162 40.000 0.00 0.00 45.15 1.94
1833 2596 2.083167 ATCGGCTTGGTGCATTTTTG 57.917 45.000 0.00 0.00 45.15 2.44
1834 2597 0.033228 TCGGCTTGGTGCATTTTTGG 59.967 50.000 0.00 0.00 45.15 3.28
1835 2598 1.567746 CGGCTTGGTGCATTTTTGGC 61.568 55.000 0.00 0.00 45.15 4.52
1836 2599 1.236616 GGCTTGGTGCATTTTTGGCC 61.237 55.000 0.00 0.00 45.15 5.36
1837 2600 0.534652 GCTTGGTGCATTTTTGGCCA 60.535 50.000 0.00 0.00 42.31 5.36
1838 2601 1.883209 GCTTGGTGCATTTTTGGCCAT 60.883 47.619 6.09 0.00 42.31 4.40
1839 2602 2.506444 CTTGGTGCATTTTTGGCCATT 58.494 42.857 6.09 0.00 0.00 3.16
1840 2603 1.893544 TGGTGCATTTTTGGCCATTG 58.106 45.000 6.09 3.51 0.00 2.82
1841 2604 1.166989 GGTGCATTTTTGGCCATTGG 58.833 50.000 6.09 0.00 0.00 3.16
1842 2605 1.271271 GGTGCATTTTTGGCCATTGGA 60.271 47.619 6.09 0.33 0.00 3.53
1843 2606 2.618559 GGTGCATTTTTGGCCATTGGAT 60.619 45.455 6.09 0.00 0.00 3.41
1844 2607 3.083293 GTGCATTTTTGGCCATTGGATT 58.917 40.909 6.09 0.00 0.00 3.01
1845 2608 3.506844 GTGCATTTTTGGCCATTGGATTT 59.493 39.130 6.09 0.00 0.00 2.17
1846 2609 3.757493 TGCATTTTTGGCCATTGGATTTC 59.243 39.130 6.09 0.00 0.00 2.17
1847 2610 3.129113 GCATTTTTGGCCATTGGATTTCC 59.871 43.478 6.09 0.00 0.00 3.13
1848 2611 4.591929 CATTTTTGGCCATTGGATTTCCT 58.408 39.130 6.09 0.00 36.82 3.36
1849 2612 3.979101 TTTTGGCCATTGGATTTCCTC 57.021 42.857 6.09 0.00 36.82 3.71
1850 2613 2.925966 TTGGCCATTGGATTTCCTCT 57.074 45.000 6.09 0.00 36.82 3.69
1851 2614 2.925966 TGGCCATTGGATTTCCTCTT 57.074 45.000 0.00 0.00 36.82 2.85
1852 2615 4.329638 TTGGCCATTGGATTTCCTCTTA 57.670 40.909 6.09 0.00 36.82 2.10
1853 2616 4.329638 TGGCCATTGGATTTCCTCTTAA 57.670 40.909 0.00 0.00 36.82 1.85
1854 2617 4.882559 TGGCCATTGGATTTCCTCTTAAT 58.117 39.130 0.00 0.00 36.82 1.40
1855 2618 4.895297 TGGCCATTGGATTTCCTCTTAATC 59.105 41.667 0.00 0.00 36.82 1.75
1857 2620 4.281941 GCCATTGGATTTCCTCTTAATCCC 59.718 45.833 6.95 0.00 46.88 3.85
1858 2621 4.520492 CCATTGGATTTCCTCTTAATCCCG 59.480 45.833 11.05 2.01 46.88 5.14
1859 2622 3.208747 TGGATTTCCTCTTAATCCCGC 57.791 47.619 11.05 0.00 46.88 6.13
1860 2623 2.777692 TGGATTTCCTCTTAATCCCGCT 59.222 45.455 11.05 0.00 46.88 5.52
1861 2624 3.202151 TGGATTTCCTCTTAATCCCGCTT 59.798 43.478 11.05 0.00 46.88 4.68
1862 2625 4.207955 GGATTTCCTCTTAATCCCGCTTT 58.792 43.478 0.00 0.00 43.40 3.51
1863 2626 4.036852 GGATTTCCTCTTAATCCCGCTTTG 59.963 45.833 0.00 0.00 43.40 2.77
1864 2627 3.992943 TTCCTCTTAATCCCGCTTTGA 57.007 42.857 0.00 0.00 0.00 2.69
1865 2628 3.261981 TCCTCTTAATCCCGCTTTGAC 57.738 47.619 0.00 0.00 0.00 3.18
1866 2629 2.838202 TCCTCTTAATCCCGCTTTGACT 59.162 45.455 0.00 0.00 0.00 3.41
1867 2630 3.118738 TCCTCTTAATCCCGCTTTGACTC 60.119 47.826 0.00 0.00 0.00 3.36
1868 2631 2.860735 CTCTTAATCCCGCTTTGACTCG 59.139 50.000 0.00 0.00 0.00 4.18
1869 2632 1.327764 CTTAATCCCGCTTTGACTCGC 59.672 52.381 0.00 0.00 0.00 5.03
1870 2633 0.535335 TAATCCCGCTTTGACTCGCT 59.465 50.000 0.00 0.00 0.00 4.93
1871 2634 0.535335 AATCCCGCTTTGACTCGCTA 59.465 50.000 0.00 0.00 0.00 4.26
1872 2635 0.179108 ATCCCGCTTTGACTCGCTAC 60.179 55.000 0.00 0.00 0.00 3.58
1873 2636 1.080093 CCCGCTTTGACTCGCTACA 60.080 57.895 0.00 0.00 0.00 2.74
1874 2637 0.460284 CCCGCTTTGACTCGCTACAT 60.460 55.000 0.00 0.00 0.00 2.29
1875 2638 1.359848 CCGCTTTGACTCGCTACATT 58.640 50.000 0.00 0.00 0.00 2.71
1876 2639 1.324736 CCGCTTTGACTCGCTACATTC 59.675 52.381 0.00 0.00 0.00 2.67
1877 2640 1.007011 CGCTTTGACTCGCTACATTCG 60.007 52.381 0.00 0.00 0.00 3.34
1878 2641 1.267087 GCTTTGACTCGCTACATTCGC 60.267 52.381 0.00 0.00 0.00 4.70
1879 2642 2.263077 CTTTGACTCGCTACATTCGCT 58.737 47.619 0.00 0.00 0.00 4.93
1880 2643 3.435566 CTTTGACTCGCTACATTCGCTA 58.564 45.455 0.00 0.00 0.00 4.26
1881 2644 2.470196 TGACTCGCTACATTCGCTAC 57.530 50.000 0.00 0.00 0.00 3.58
1882 2645 1.741145 TGACTCGCTACATTCGCTACA 59.259 47.619 0.00 0.00 0.00 2.74
1883 2646 2.162809 TGACTCGCTACATTCGCTACAA 59.837 45.455 0.00 0.00 0.00 2.41
1884 2647 3.181490 TGACTCGCTACATTCGCTACAAT 60.181 43.478 0.00 0.00 0.00 2.71
1885 2648 3.782046 ACTCGCTACATTCGCTACAATT 58.218 40.909 0.00 0.00 0.00 2.32
1886 2649 3.551890 ACTCGCTACATTCGCTACAATTG 59.448 43.478 3.24 3.24 0.00 2.32
1887 2650 3.776340 TCGCTACATTCGCTACAATTGA 58.224 40.909 13.59 0.00 0.00 2.57
1888 2651 3.796717 TCGCTACATTCGCTACAATTGAG 59.203 43.478 13.59 6.50 0.00 3.02
1889 2652 3.796717 CGCTACATTCGCTACAATTGAGA 59.203 43.478 13.59 3.17 0.00 3.27
1890 2653 4.085363 CGCTACATTCGCTACAATTGAGAG 60.085 45.833 13.59 9.89 0.00 3.20
1891 2654 4.210120 GCTACATTCGCTACAATTGAGAGG 59.790 45.833 13.59 3.88 0.00 3.69
1892 2655 4.207891 ACATTCGCTACAATTGAGAGGT 57.792 40.909 13.59 5.74 0.00 3.85
1893 2656 4.579869 ACATTCGCTACAATTGAGAGGTT 58.420 39.130 13.59 0.00 0.00 3.50
1894 2657 5.003804 ACATTCGCTACAATTGAGAGGTTT 58.996 37.500 13.59 0.00 0.00 3.27
1895 2658 5.122396 ACATTCGCTACAATTGAGAGGTTTC 59.878 40.000 13.59 0.00 0.00 2.78
1896 2659 3.596214 TCGCTACAATTGAGAGGTTTCC 58.404 45.455 13.59 0.00 0.00 3.13
1897 2660 2.348666 CGCTACAATTGAGAGGTTTCCG 59.651 50.000 13.59 4.01 0.00 4.30
1898 2661 2.096013 GCTACAATTGAGAGGTTTCCGC 59.904 50.000 13.59 0.00 0.00 5.54
1899 2662 2.568623 ACAATTGAGAGGTTTCCGCT 57.431 45.000 13.59 0.00 36.09 5.52
1900 2663 3.695830 ACAATTGAGAGGTTTCCGCTA 57.304 42.857 13.59 0.00 32.83 4.26
1901 2664 4.222124 ACAATTGAGAGGTTTCCGCTAT 57.778 40.909 13.59 0.00 32.83 2.97
1902 2665 4.589908 ACAATTGAGAGGTTTCCGCTATT 58.410 39.130 13.59 0.00 32.83 1.73
1903 2666 4.636206 ACAATTGAGAGGTTTCCGCTATTC 59.364 41.667 13.59 0.00 32.83 1.75
1904 2667 4.762289 ATTGAGAGGTTTCCGCTATTCT 57.238 40.909 0.00 0.00 32.83 2.40
1905 2668 3.526931 TGAGAGGTTTCCGCTATTCTG 57.473 47.619 0.00 0.00 32.83 3.02
1906 2669 2.168521 TGAGAGGTTTCCGCTATTCTGG 59.831 50.000 0.00 0.00 32.83 3.86
1907 2670 2.168728 GAGAGGTTTCCGCTATTCTGGT 59.831 50.000 0.00 0.00 32.83 4.00
1908 2671 2.093447 AGAGGTTTCCGCTATTCTGGTG 60.093 50.000 0.00 0.00 30.33 4.17
1909 2672 1.906574 AGGTTTCCGCTATTCTGGTGA 59.093 47.619 0.00 0.00 0.00 4.02
1910 2673 2.007608 GGTTTCCGCTATTCTGGTGAC 58.992 52.381 0.00 0.00 0.00 3.67
1911 2674 2.614481 GGTTTCCGCTATTCTGGTGACA 60.614 50.000 0.00 0.00 39.59 3.58
1912 2675 3.071479 GTTTCCGCTATTCTGGTGACAA 58.929 45.455 0.00 0.00 42.06 3.18
1913 2676 3.627395 TTCCGCTATTCTGGTGACAAT 57.373 42.857 0.00 0.00 42.06 2.71
1914 2677 3.627395 TCCGCTATTCTGGTGACAATT 57.373 42.857 0.00 0.00 42.06 2.32
1915 2678 3.950397 TCCGCTATTCTGGTGACAATTT 58.050 40.909 0.00 0.00 42.06 1.82
1916 2679 4.331968 TCCGCTATTCTGGTGACAATTTT 58.668 39.130 0.00 0.00 42.06 1.82
1917 2680 4.155826 TCCGCTATTCTGGTGACAATTTTG 59.844 41.667 0.00 0.00 42.06 2.44
1918 2681 4.414852 CGCTATTCTGGTGACAATTTTGG 58.585 43.478 0.00 0.00 42.06 3.28
1919 2682 4.675146 CGCTATTCTGGTGACAATTTTGGG 60.675 45.833 0.00 0.00 42.06 4.12
1920 2683 4.220602 GCTATTCTGGTGACAATTTTGGGT 59.779 41.667 0.00 0.00 42.06 4.51
1921 2684 4.605640 ATTCTGGTGACAATTTTGGGTG 57.394 40.909 0.00 0.00 42.06 4.61
1922 2685 1.686052 TCTGGTGACAATTTTGGGTGC 59.314 47.619 0.00 0.00 42.06 5.01
1923 2686 0.755686 TGGTGACAATTTTGGGTGCC 59.244 50.000 0.00 0.00 37.44 5.01
1924 2687 1.047801 GGTGACAATTTTGGGTGCCT 58.952 50.000 0.00 0.00 0.00 4.75
1925 2688 1.270252 GGTGACAATTTTGGGTGCCTG 60.270 52.381 0.00 0.00 0.00 4.85
1926 2689 1.047002 TGACAATTTTGGGTGCCTGG 58.953 50.000 0.00 0.00 0.00 4.45
1927 2690 1.047801 GACAATTTTGGGTGCCTGGT 58.952 50.000 0.00 0.00 0.00 4.00
1928 2691 0.758123 ACAATTTTGGGTGCCTGGTG 59.242 50.000 0.00 0.00 0.00 4.17
1929 2692 0.758123 CAATTTTGGGTGCCTGGTGT 59.242 50.000 0.00 0.00 0.00 4.16
1930 2693 1.967066 CAATTTTGGGTGCCTGGTGTA 59.033 47.619 0.00 0.00 0.00 2.90
1931 2694 2.366916 CAATTTTGGGTGCCTGGTGTAA 59.633 45.455 0.00 0.00 0.00 2.41
1932 2695 2.160721 TTTTGGGTGCCTGGTGTAAA 57.839 45.000 0.00 0.00 0.00 2.01
1933 2696 2.160721 TTTGGGTGCCTGGTGTAAAA 57.839 45.000 0.00 0.00 0.00 1.52
1934 2697 2.390225 TTGGGTGCCTGGTGTAAAAT 57.610 45.000 0.00 0.00 0.00 1.82
1935 2698 2.390225 TGGGTGCCTGGTGTAAAATT 57.610 45.000 0.00 0.00 0.00 1.82
1936 2699 1.967066 TGGGTGCCTGGTGTAAAATTG 59.033 47.619 0.00 0.00 0.00 2.32
1937 2700 1.275010 GGGTGCCTGGTGTAAAATTGG 59.725 52.381 0.00 0.00 0.00 3.16
1938 2701 1.275010 GGTGCCTGGTGTAAAATTGGG 59.725 52.381 0.00 0.00 0.00 4.12
1939 2702 0.972883 TGCCTGGTGTAAAATTGGGC 59.027 50.000 0.00 0.00 38.67 5.36
1940 2703 0.972883 GCCTGGTGTAAAATTGGGCA 59.027 50.000 0.00 0.00 38.16 5.36
1941 2704 1.346068 GCCTGGTGTAAAATTGGGCAA 59.654 47.619 0.00 0.00 38.16 4.52
1942 2705 2.224402 GCCTGGTGTAAAATTGGGCAAA 60.224 45.455 0.00 0.00 38.16 3.68
1943 2706 3.745797 GCCTGGTGTAAAATTGGGCAAAA 60.746 43.478 0.00 0.00 38.16 2.44
1944 2707 4.650734 CCTGGTGTAAAATTGGGCAAAAT 58.349 39.130 0.00 0.00 0.00 1.82
1945 2708 4.455190 CCTGGTGTAAAATTGGGCAAAATG 59.545 41.667 0.00 0.00 0.00 2.32
1946 2709 4.392940 TGGTGTAAAATTGGGCAAAATGG 58.607 39.130 0.00 0.00 0.00 3.16
1947 2710 3.755905 GGTGTAAAATTGGGCAAAATGGG 59.244 43.478 0.00 0.00 0.00 4.00
1948 2711 3.190327 GTGTAAAATTGGGCAAAATGGGC 59.810 43.478 0.00 0.00 0.00 5.36
1949 2712 2.976068 AAAATTGGGCAAAATGGGCT 57.024 40.000 0.00 0.00 0.00 5.19
1950 2713 2.976068 AAATTGGGCAAAATGGGCTT 57.024 40.000 0.00 0.00 0.00 4.35
1951 2714 2.495155 AATTGGGCAAAATGGGCTTC 57.505 45.000 0.00 0.00 0.00 3.86
1952 2715 1.660242 ATTGGGCAAAATGGGCTTCT 58.340 45.000 0.00 0.00 0.00 2.85
1953 2716 0.686224 TTGGGCAAAATGGGCTTCTG 59.314 50.000 0.00 0.00 0.00 3.02
1954 2717 1.078918 GGGCAAAATGGGCTTCTGC 60.079 57.895 0.00 0.00 38.76 4.26
1955 2718 1.672898 GGCAAAATGGGCTTCTGCA 59.327 52.632 0.00 0.00 41.91 4.41
1956 2719 0.035176 GGCAAAATGGGCTTCTGCAA 59.965 50.000 0.00 0.00 41.91 4.08
1957 2720 1.435577 GCAAAATGGGCTTCTGCAAG 58.564 50.000 0.00 0.00 41.91 4.01
1958 2721 1.270465 GCAAAATGGGCTTCTGCAAGT 60.270 47.619 0.00 0.00 41.91 3.16
1959 2722 2.409975 CAAAATGGGCTTCTGCAAGTG 58.590 47.619 0.00 0.00 41.91 3.16
1960 2723 1.708341 AAATGGGCTTCTGCAAGTGT 58.292 45.000 0.00 0.00 41.91 3.55
1961 2724 1.251251 AATGGGCTTCTGCAAGTGTC 58.749 50.000 0.00 0.00 41.91 3.67
1962 2725 0.610232 ATGGGCTTCTGCAAGTGTCC 60.610 55.000 0.00 0.00 41.91 4.02
1963 2726 2.328099 GGGCTTCTGCAAGTGTCCG 61.328 63.158 0.00 0.00 41.91 4.79
1964 2727 2.558313 GCTTCTGCAAGTGTCCGC 59.442 61.111 0.00 0.00 39.41 5.54
1965 2728 1.963338 GCTTCTGCAAGTGTCCGCT 60.963 57.895 0.00 0.00 39.41 5.52
1966 2729 1.510480 GCTTCTGCAAGTGTCCGCTT 61.510 55.000 0.00 0.00 39.41 4.68
1967 2730 0.236711 CTTCTGCAAGTGTCCGCTTG 59.763 55.000 14.63 14.63 46.21 4.01
1968 2731 0.463654 TTCTGCAAGTGTCCGCTTGT 60.464 50.000 18.71 0.00 45.47 3.16
1969 2732 1.159713 TCTGCAAGTGTCCGCTTGTG 61.160 55.000 18.71 13.12 45.47 3.33
1970 2733 2.050985 GCAAGTGTCCGCTTGTGC 60.051 61.111 18.71 5.77 45.47 4.57
1971 2734 2.833533 GCAAGTGTCCGCTTGTGCA 61.834 57.895 18.71 0.00 45.47 4.57
1972 2735 1.951510 CAAGTGTCCGCTTGTGCAT 59.048 52.632 11.49 0.00 40.52 3.96
1973 2736 0.110056 CAAGTGTCCGCTTGTGCATC 60.110 55.000 11.49 0.00 40.52 3.91
1974 2737 1.237285 AAGTGTCCGCTTGTGCATCC 61.237 55.000 0.00 0.00 39.64 3.51
1975 2738 1.672356 GTGTCCGCTTGTGCATCCT 60.672 57.895 0.00 0.00 39.64 3.24
1976 2739 0.391130 GTGTCCGCTTGTGCATCCTA 60.391 55.000 0.00 0.00 39.64 2.94
1977 2740 0.108186 TGTCCGCTTGTGCATCCTAG 60.108 55.000 0.00 0.00 39.64 3.02
1978 2741 0.175760 GTCCGCTTGTGCATCCTAGA 59.824 55.000 0.00 0.00 39.64 2.43
1979 2742 0.901827 TCCGCTTGTGCATCCTAGAA 59.098 50.000 0.00 0.00 39.64 2.10
1980 2743 1.277842 TCCGCTTGTGCATCCTAGAAA 59.722 47.619 0.00 0.00 39.64 2.52
1981 2744 2.083774 CCGCTTGTGCATCCTAGAAAA 58.916 47.619 0.00 0.00 39.64 2.29
1982 2745 2.487762 CCGCTTGTGCATCCTAGAAAAA 59.512 45.455 0.00 0.00 39.64 1.94
2003 2766 7.914427 AAAAATAGGAAGAAACAGGTCCTTT 57.086 32.000 0.00 0.00 42.00 3.11
2004 2767 7.526142 AAAATAGGAAGAAACAGGTCCTTTC 57.474 36.000 0.00 0.00 42.00 2.62
2005 2768 6.455690 AATAGGAAGAAACAGGTCCTTTCT 57.544 37.500 0.55 0.55 42.00 2.52
2006 2769 7.569599 AATAGGAAGAAACAGGTCCTTTCTA 57.430 36.000 6.30 0.00 42.00 2.10
2007 2770 5.906772 AGGAAGAAACAGGTCCTTTCTAA 57.093 39.130 6.30 0.00 38.71 2.10
2008 2771 6.262056 AGGAAGAAACAGGTCCTTTCTAAA 57.738 37.500 6.30 0.00 38.71 1.85
2009 2772 6.299922 AGGAAGAAACAGGTCCTTTCTAAAG 58.700 40.000 6.30 0.00 38.71 1.85
2024 2787 6.630203 TTTCTAAAGGTAGGCATTAGACCA 57.370 37.500 0.00 0.00 35.88 4.02
2025 2788 5.871396 TCTAAAGGTAGGCATTAGACCAG 57.129 43.478 0.00 0.00 35.56 4.00
2026 2789 5.525484 TCTAAAGGTAGGCATTAGACCAGA 58.475 41.667 0.00 0.00 35.56 3.86
2027 2790 4.762289 AAAGGTAGGCATTAGACCAGAG 57.238 45.455 0.00 0.00 35.56 3.35
2028 2791 3.406512 AGGTAGGCATTAGACCAGAGT 57.593 47.619 0.00 0.00 35.56 3.24
2029 2792 3.725634 AGGTAGGCATTAGACCAGAGTT 58.274 45.455 0.00 0.00 35.56 3.01
2030 2793 4.104831 AGGTAGGCATTAGACCAGAGTTT 58.895 43.478 0.00 0.00 35.56 2.66
2031 2794 4.162509 AGGTAGGCATTAGACCAGAGTTTC 59.837 45.833 0.00 0.00 35.56 2.78
2032 2795 3.252974 AGGCATTAGACCAGAGTTTCG 57.747 47.619 0.00 0.00 0.00 3.46
2033 2796 2.567615 AGGCATTAGACCAGAGTTTCGT 59.432 45.455 0.00 0.00 0.00 3.85
2034 2797 2.673368 GGCATTAGACCAGAGTTTCGTG 59.327 50.000 0.00 0.00 0.00 4.35
2035 2798 3.585862 GCATTAGACCAGAGTTTCGTGA 58.414 45.455 0.00 0.00 0.00 4.35
2036 2799 3.614616 GCATTAGACCAGAGTTTCGTGAG 59.385 47.826 0.00 0.00 0.00 3.51
2037 2800 3.299340 TTAGACCAGAGTTTCGTGAGC 57.701 47.619 0.00 0.00 0.00 4.26
2038 2801 0.318762 AGACCAGAGTTTCGTGAGCC 59.681 55.000 0.00 0.00 0.00 4.70
2039 2802 1.006102 ACCAGAGTTTCGTGAGCCG 60.006 57.895 0.00 0.00 38.13 5.52
2040 2803 1.738099 CCAGAGTTTCGTGAGCCGG 60.738 63.158 0.00 0.00 37.11 6.13
2041 2804 1.289066 CAGAGTTTCGTGAGCCGGA 59.711 57.895 5.05 0.00 37.11 5.14
2042 2805 0.734253 CAGAGTTTCGTGAGCCGGAG 60.734 60.000 5.05 0.00 37.11 4.63
2043 2806 0.894184 AGAGTTTCGTGAGCCGGAGA 60.894 55.000 5.05 0.00 37.11 3.71
2044 2807 0.038526 GAGTTTCGTGAGCCGGAGAA 60.039 55.000 5.05 0.00 37.11 2.87
2045 2808 0.038159 AGTTTCGTGAGCCGGAGAAG 60.038 55.000 5.05 0.00 37.11 2.85
2046 2809 0.038526 GTTTCGTGAGCCGGAGAAGA 60.039 55.000 5.05 0.00 37.11 2.87
2047 2810 0.895530 TTTCGTGAGCCGGAGAAGAT 59.104 50.000 5.05 0.00 37.11 2.40
2048 2811 0.456221 TTCGTGAGCCGGAGAAGATC 59.544 55.000 5.05 0.00 37.11 2.75
2049 2812 1.298713 CGTGAGCCGGAGAAGATCG 60.299 63.158 5.05 0.00 0.00 3.69
2050 2813 1.715862 CGTGAGCCGGAGAAGATCGA 61.716 60.000 5.05 0.00 0.00 3.59
2051 2814 0.671251 GTGAGCCGGAGAAGATCGAT 59.329 55.000 5.05 0.00 0.00 3.59
2052 2815 1.880675 GTGAGCCGGAGAAGATCGATA 59.119 52.381 5.05 0.00 0.00 2.92
2053 2816 2.293677 GTGAGCCGGAGAAGATCGATAA 59.706 50.000 5.05 0.00 0.00 1.75
2054 2817 2.956333 TGAGCCGGAGAAGATCGATAAA 59.044 45.455 5.05 0.00 0.00 1.40
2055 2818 3.004839 TGAGCCGGAGAAGATCGATAAAG 59.995 47.826 5.05 0.00 0.00 1.85
2056 2819 2.062519 GCCGGAGAAGATCGATAAAGC 58.937 52.381 5.05 0.00 0.00 3.51
2057 2820 2.288518 GCCGGAGAAGATCGATAAAGCT 60.289 50.000 5.05 0.00 0.00 3.74
2058 2821 3.800604 GCCGGAGAAGATCGATAAAGCTT 60.801 47.826 5.05 0.00 0.00 3.74
2059 2822 4.558898 GCCGGAGAAGATCGATAAAGCTTA 60.559 45.833 5.05 0.00 0.00 3.09
2060 2823 5.157781 CCGGAGAAGATCGATAAAGCTTAG 58.842 45.833 0.00 0.00 0.00 2.18
2061 2824 5.048643 CCGGAGAAGATCGATAAAGCTTAGA 60.049 44.000 0.00 0.00 0.00 2.10
2062 2825 6.439599 CGGAGAAGATCGATAAAGCTTAGAA 58.560 40.000 0.00 0.00 0.00 2.10
2063 2826 6.361214 CGGAGAAGATCGATAAAGCTTAGAAC 59.639 42.308 0.00 0.00 0.00 3.01
2064 2827 7.430441 GGAGAAGATCGATAAAGCTTAGAACT 58.570 38.462 0.00 0.00 0.00 3.01
2065 2828 7.923878 GGAGAAGATCGATAAAGCTTAGAACTT 59.076 37.037 0.00 7.75 0.00 2.66
2066 2829 8.641499 AGAAGATCGATAAAGCTTAGAACTTG 57.359 34.615 15.76 0.00 0.00 3.16
2067 2830 6.836577 AGATCGATAAAGCTTAGAACTTGC 57.163 37.500 0.00 0.00 0.00 4.01
2068 2831 6.578023 AGATCGATAAAGCTTAGAACTTGCT 58.422 36.000 0.00 0.00 38.87 3.91
2069 2832 6.699642 AGATCGATAAAGCTTAGAACTTGCTC 59.300 38.462 0.00 0.00 35.85 4.26
2070 2833 4.798907 TCGATAAAGCTTAGAACTTGCTCG 59.201 41.667 0.00 0.00 35.85 5.03
2071 2834 4.563184 CGATAAAGCTTAGAACTTGCTCGT 59.437 41.667 0.00 0.00 35.85 4.18
2072 2835 5.062308 CGATAAAGCTTAGAACTTGCTCGTT 59.938 40.000 0.00 0.00 35.85 3.85
2073 2836 6.401153 CGATAAAGCTTAGAACTTGCTCGTTT 60.401 38.462 0.00 0.00 35.85 3.60
2074 2837 4.474226 AAGCTTAGAACTTGCTCGTTTG 57.526 40.909 0.00 0.00 35.85 2.93
2075 2838 2.224314 AGCTTAGAACTTGCTCGTTTGC 59.776 45.455 0.00 0.00 30.41 3.68
2076 2839 2.032030 GCTTAGAACTTGCTCGTTTGCA 60.032 45.455 0.00 0.00 41.65 4.08
2077 2840 3.803555 CTTAGAACTTGCTCGTTTGCAG 58.196 45.455 0.00 0.00 44.27 4.41
2078 2841 0.947244 AGAACTTGCTCGTTTGCAGG 59.053 50.000 7.92 7.92 44.27 4.85
2079 2842 0.944386 GAACTTGCTCGTTTGCAGGA 59.056 50.000 14.02 0.00 44.27 3.86
2080 2843 0.947244 AACTTGCTCGTTTGCAGGAG 59.053 50.000 14.02 7.03 44.27 3.69
2081 2844 0.886490 ACTTGCTCGTTTGCAGGAGG 60.886 55.000 14.02 0.74 44.27 4.30
2082 2845 0.603707 CTTGCTCGTTTGCAGGAGGA 60.604 55.000 11.83 7.41 44.27 3.71
2083 2846 0.603707 TTGCTCGTTTGCAGGAGGAG 60.604 55.000 14.12 14.12 44.27 3.69
2084 2847 1.743252 GCTCGTTTGCAGGAGGAGG 60.743 63.158 17.86 5.88 35.73 4.30
2085 2848 1.743252 CTCGTTTGCAGGAGGAGGC 60.743 63.158 11.77 0.00 32.15 4.70
2086 2849 3.121030 CGTTTGCAGGAGGAGGCG 61.121 66.667 0.00 0.00 0.00 5.52
2087 2850 2.747855 GTTTGCAGGAGGAGGCGG 60.748 66.667 0.00 0.00 0.00 6.13
2088 2851 2.927856 TTTGCAGGAGGAGGCGGA 60.928 61.111 0.00 0.00 0.00 5.54
2089 2852 3.254024 TTTGCAGGAGGAGGCGGAC 62.254 63.158 0.00 0.00 0.00 4.79
2090 2853 4.704103 TGCAGGAGGAGGCGGACT 62.704 66.667 0.00 0.00 0.00 3.85
2091 2854 4.154347 GCAGGAGGAGGCGGACTG 62.154 72.222 0.00 0.00 0.00 3.51
2092 2855 3.465403 CAGGAGGAGGCGGACTGG 61.465 72.222 0.00 0.00 0.00 4.00
2093 2856 3.673597 AGGAGGAGGCGGACTGGA 61.674 66.667 0.00 0.00 0.00 3.86
2094 2857 3.462678 GGAGGAGGCGGACTGGAC 61.463 72.222 0.00 0.00 0.00 4.02
2095 2858 3.462678 GAGGAGGCGGACTGGACC 61.463 72.222 0.00 0.00 0.00 4.46
2096 2859 4.316823 AGGAGGCGGACTGGACCA 62.317 66.667 0.00 0.00 0.00 4.02
2097 2860 4.083862 GGAGGCGGACTGGACCAC 62.084 72.222 0.00 0.00 0.00 4.16
2098 2861 4.436998 GAGGCGGACTGGACCACG 62.437 72.222 0.00 0.00 0.00 4.94
2102 2865 4.742201 CGGACTGGACCACGGCTG 62.742 72.222 0.00 0.00 0.00 4.85
2103 2866 3.311110 GGACTGGACCACGGCTGA 61.311 66.667 0.00 0.00 0.00 4.26
2104 2867 2.741092 GACTGGACCACGGCTGAA 59.259 61.111 0.00 0.00 0.00 3.02
2105 2868 1.070786 GACTGGACCACGGCTGAAA 59.929 57.895 0.00 0.00 0.00 2.69
2106 2869 1.227853 ACTGGACCACGGCTGAAAC 60.228 57.895 0.00 0.00 0.00 2.78
2107 2870 1.071471 CTGGACCACGGCTGAAACT 59.929 57.895 0.00 0.00 0.00 2.66
2108 2871 1.227823 TGGACCACGGCTGAAACTG 60.228 57.895 0.00 0.00 0.00 3.16
2109 2872 2.617274 GGACCACGGCTGAAACTGC 61.617 63.158 0.00 0.00 0.00 4.40
2110 2873 2.594592 ACCACGGCTGAAACTGCC 60.595 61.111 0.00 9.11 43.55 4.85
2111 2874 2.594303 CCACGGCTGAAACTGCCA 60.594 61.111 17.02 0.00 46.59 4.92
2112 2875 2.620112 CCACGGCTGAAACTGCCAG 61.620 63.158 17.02 12.52 46.59 4.85
2113 2876 2.281761 ACGGCTGAAACTGCCAGG 60.282 61.111 17.02 6.71 46.59 4.45
2114 2877 3.741476 CGGCTGAAACTGCCAGGC 61.741 66.667 3.66 3.66 46.59 4.85
2116 2879 2.647297 GCTGAAACTGCCAGGCAC 59.353 61.111 11.22 0.49 33.79 5.01
2117 2880 2.949106 CTGAAACTGCCAGGCACG 59.051 61.111 11.22 9.72 33.79 5.34
2118 2881 2.594303 TGAAACTGCCAGGCACGG 60.594 61.111 11.22 4.25 33.79 4.94
2119 2882 2.281484 GAAACTGCCAGGCACGGA 60.281 61.111 11.22 0.00 33.79 4.69
2120 2883 2.594592 AAACTGCCAGGCACGGAC 60.595 61.111 11.22 0.00 33.79 4.79
2121 2884 3.120086 AAACTGCCAGGCACGGACT 62.120 57.895 11.22 0.00 33.79 3.85
2122 2885 1.764571 AAACTGCCAGGCACGGACTA 61.765 55.000 11.22 0.00 33.79 2.59
2123 2886 1.764571 AACTGCCAGGCACGGACTAA 61.765 55.000 11.22 0.00 33.79 2.24
2124 2887 1.003839 CTGCCAGGCACGGACTAAA 60.004 57.895 11.22 0.00 33.79 1.85
2125 2888 0.605319 CTGCCAGGCACGGACTAAAA 60.605 55.000 11.22 0.00 33.79 1.52
2126 2889 0.605319 TGCCAGGCACGGACTAAAAG 60.605 55.000 11.22 0.00 31.71 2.27
2127 2890 1.923227 GCCAGGCACGGACTAAAAGC 61.923 60.000 6.55 0.00 0.00 3.51
2128 2891 0.321653 CCAGGCACGGACTAAAAGCT 60.322 55.000 0.00 0.00 0.00 3.74
2129 2892 1.523758 CAGGCACGGACTAAAAGCTT 58.476 50.000 0.00 0.00 0.00 3.74
2130 2893 1.880027 CAGGCACGGACTAAAAGCTTT 59.120 47.619 5.69 5.69 0.00 3.51
2131 2894 2.293399 CAGGCACGGACTAAAAGCTTTT 59.707 45.455 26.50 26.50 0.00 2.27
2132 2895 3.500680 CAGGCACGGACTAAAAGCTTTTA 59.499 43.478 25.94 25.94 0.00 1.52
2133 2896 4.156008 CAGGCACGGACTAAAAGCTTTTAT 59.844 41.667 27.35 18.61 32.69 1.40
2134 2897 4.395231 AGGCACGGACTAAAAGCTTTTATC 59.605 41.667 27.35 23.64 32.69 1.75
2135 2898 4.155280 GGCACGGACTAAAAGCTTTTATCA 59.845 41.667 27.35 11.65 32.69 2.15
2136 2899 5.335348 GGCACGGACTAAAAGCTTTTATCAA 60.335 40.000 27.35 11.31 32.69 2.57
2137 2900 5.795441 GCACGGACTAAAAGCTTTTATCAAG 59.205 40.000 27.35 20.85 32.69 3.02
2138 2901 6.314784 CACGGACTAAAAGCTTTTATCAAGG 58.685 40.000 27.35 18.89 32.69 3.61
2139 2902 6.148811 CACGGACTAAAAGCTTTTATCAAGGA 59.851 38.462 27.35 9.64 32.69 3.36
2140 2903 6.884836 ACGGACTAAAAGCTTTTATCAAGGAT 59.115 34.615 27.35 10.88 32.69 3.24
2141 2904 7.393515 ACGGACTAAAAGCTTTTATCAAGGATT 59.606 33.333 27.35 5.32 32.69 3.01
2142 2905 7.910683 CGGACTAAAAGCTTTTATCAAGGATTC 59.089 37.037 27.35 12.86 32.69 2.52
2143 2906 8.191446 GGACTAAAAGCTTTTATCAAGGATTCC 58.809 37.037 27.35 17.06 32.69 3.01
2144 2907 8.067751 ACTAAAAGCTTTTATCAAGGATTCCC 57.932 34.615 27.35 0.00 32.69 3.97
2145 2908 5.582689 AAAGCTTTTATCAAGGATTCCCG 57.417 39.130 5.69 0.00 37.58 5.14
2146 2909 4.503714 AGCTTTTATCAAGGATTCCCGA 57.496 40.909 0.00 0.00 37.58 5.14
2147 2910 4.455606 AGCTTTTATCAAGGATTCCCGAG 58.544 43.478 0.00 0.00 37.58 4.63
2148 2911 4.080299 AGCTTTTATCAAGGATTCCCGAGT 60.080 41.667 0.00 0.00 37.58 4.18
2149 2912 4.273724 GCTTTTATCAAGGATTCCCGAGTC 59.726 45.833 0.00 0.00 37.58 3.36
2150 2913 5.428253 CTTTTATCAAGGATTCCCGAGTCA 58.572 41.667 0.00 0.00 37.58 3.41
2151 2914 5.429681 TTTATCAAGGATTCCCGAGTCAA 57.570 39.130 0.00 0.00 37.58 3.18
2152 2915 5.429681 TTATCAAGGATTCCCGAGTCAAA 57.570 39.130 0.00 0.00 37.58 2.69
2153 2916 3.053831 TCAAGGATTCCCGAGTCAAAC 57.946 47.619 0.00 0.00 37.58 2.93
2154 2917 1.732259 CAAGGATTCCCGAGTCAAACG 59.268 52.381 0.00 0.00 37.58 3.60
2155 2918 1.263356 AGGATTCCCGAGTCAAACGA 58.737 50.000 0.00 0.00 37.58 3.85
2156 2919 1.067071 AGGATTCCCGAGTCAAACGAC 60.067 52.381 0.00 0.00 37.58 4.34
2157 2920 1.067071 GGATTCCCGAGTCAAACGACT 60.067 52.381 0.00 0.00 46.60 4.18
2158 2921 2.165030 GGATTCCCGAGTCAAACGACTA 59.835 50.000 0.00 0.00 43.92 2.59
2159 2922 2.712057 TTCCCGAGTCAAACGACTAC 57.288 50.000 0.00 0.00 43.92 2.73
2160 2923 0.883833 TCCCGAGTCAAACGACTACC 59.116 55.000 0.00 0.00 43.92 3.18
2161 2924 0.599558 CCCGAGTCAAACGACTACCA 59.400 55.000 0.00 0.00 43.92 3.25
2162 2925 1.203994 CCCGAGTCAAACGACTACCAT 59.796 52.381 0.00 0.00 43.92 3.55
2163 2926 2.527100 CCGAGTCAAACGACTACCATC 58.473 52.381 0.00 0.00 43.92 3.51
2164 2927 2.163815 CCGAGTCAAACGACTACCATCT 59.836 50.000 0.00 0.00 43.92 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.523972 GGTAATCCCTCTTCTCCCACTTT 59.476 47.826 0.00 0.00 0.00 2.66
242 285 9.589461 TTCTGAATTTAACCAACTAAACCCATA 57.411 29.630 0.00 0.00 0.00 2.74
392 442 5.106752 GGAACAAGAGAGCTGTTTCATCTTC 60.107 44.000 0.00 0.00 0.00 2.87
954 1275 9.962783 TGCCATTCAAAAAGGAAATTAATTTTG 57.037 25.926 14.45 8.73 41.69 2.44
1101 1427 3.998341 CCTTTGGTTTTGGATGCTCATTG 59.002 43.478 0.00 0.00 0.00 2.82
1318 1656 9.905713 TTGATAGGAAAAGAATACTTAGCACAT 57.094 29.630 0.00 0.00 35.05 3.21
1436 2197 5.614324 ATGATTTTGGAGACGATAGGTGA 57.386 39.130 0.00 0.00 43.77 4.02
1532 2295 9.324032 AGGGGAGGAGTCCTACTTATTATATAT 57.676 37.037 21.30 0.00 43.36 0.86
1533 2296 8.727339 AGGGGAGGAGTCCTACTTATTATATA 57.273 38.462 21.30 0.00 43.36 0.86
1534 2297 7.622094 AGGGGAGGAGTCCTACTTATTATAT 57.378 40.000 21.30 0.00 43.36 0.86
1535 2298 7.747801 ACTAGGGGAGGAGTCCTACTTATTATA 59.252 40.741 21.30 4.84 43.36 0.98
1536 2299 5.970692 AGGGGAGGAGTCCTACTTATTAT 57.029 43.478 21.30 0.00 43.36 1.28
1537 2300 5.921861 ACTAGGGGAGGAGTCCTACTTATTA 59.078 44.000 21.30 7.73 43.36 0.98
1538 2301 4.738132 ACTAGGGGAGGAGTCCTACTTATT 59.262 45.833 21.30 6.03 43.36 1.40
1539 2302 4.326610 ACTAGGGGAGGAGTCCTACTTAT 58.673 47.826 21.30 9.72 43.36 1.73
1540 2303 3.721050 GACTAGGGGAGGAGTCCTACTTA 59.279 52.174 21.30 12.60 43.36 2.24
1541 2304 2.515005 GACTAGGGGAGGAGTCCTACTT 59.485 54.545 21.30 12.14 43.36 2.24
1542 2305 2.137702 GACTAGGGGAGGAGTCCTACT 58.862 57.143 21.30 16.70 43.36 2.57
1543 2306 2.662535 GACTAGGGGAGGAGTCCTAC 57.337 60.000 13.73 13.73 43.36 3.18
1547 2310 2.480642 ATTGGACTAGGGGAGGAGTC 57.519 55.000 0.00 0.00 41.19 3.36
1548 2311 2.765502 GAATTGGACTAGGGGAGGAGT 58.234 52.381 0.00 0.00 0.00 3.85
1549 2312 1.689273 CGAATTGGACTAGGGGAGGAG 59.311 57.143 0.00 0.00 0.00 3.69
1550 2313 1.789523 CGAATTGGACTAGGGGAGGA 58.210 55.000 0.00 0.00 0.00 3.71
1551 2314 0.106894 GCGAATTGGACTAGGGGAGG 59.893 60.000 0.00 0.00 0.00 4.30
1552 2315 0.106894 GGCGAATTGGACTAGGGGAG 59.893 60.000 0.00 0.00 0.00 4.30
1553 2316 1.342672 GGGCGAATTGGACTAGGGGA 61.343 60.000 0.00 0.00 0.00 4.81
1554 2317 1.148498 GGGCGAATTGGACTAGGGG 59.852 63.158 0.00 0.00 0.00 4.79
1555 2318 1.148498 GGGGCGAATTGGACTAGGG 59.852 63.158 0.00 0.00 0.00 3.53
1556 2319 1.227556 CGGGGCGAATTGGACTAGG 60.228 63.158 0.00 0.00 0.00 3.02
1557 2320 1.887707 GCGGGGCGAATTGGACTAG 60.888 63.158 0.00 0.00 0.00 2.57
1558 2321 2.188469 GCGGGGCGAATTGGACTA 59.812 61.111 0.00 0.00 0.00 2.59
1559 2322 4.796495 GGCGGGGCGAATTGGACT 62.796 66.667 0.00 0.00 0.00 3.85
1567 2330 4.954118 ATATGGAGGGCGGGGCGA 62.954 66.667 0.00 0.00 0.00 5.54
1568 2331 4.704833 CATATGGAGGGCGGGGCG 62.705 72.222 0.00 0.00 0.00 6.13
1569 2332 4.351054 CCATATGGAGGGCGGGGC 62.351 72.222 17.49 0.00 37.39 5.80
1570 2333 4.351054 GCCATATGGAGGGCGGGG 62.351 72.222 26.47 0.00 43.85 5.73
1575 2338 1.462035 CCCCTTGCCATATGGAGGG 59.538 63.158 30.12 30.12 44.83 4.30
1576 2339 1.363530 ACCCCCTTGCCATATGGAGG 61.364 60.000 26.47 22.03 37.39 4.30
1577 2340 0.178981 CACCCCCTTGCCATATGGAG 60.179 60.000 26.47 14.28 37.39 3.86
1578 2341 1.929745 CACCCCCTTGCCATATGGA 59.070 57.895 26.47 7.84 37.39 3.41
1579 2342 1.833934 GCACCCCCTTGCCATATGG 60.834 63.158 18.07 18.07 36.42 2.74
1580 2343 3.860681 GCACCCCCTTGCCATATG 58.139 61.111 0.00 0.00 36.42 1.78
1586 2349 2.991540 GAAGTGGCACCCCCTTGC 60.992 66.667 15.27 0.00 42.18 4.01
1587 2350 2.283173 GGAAGTGGCACCCCCTTG 60.283 66.667 15.27 0.00 0.00 3.61
1588 2351 0.774491 TAAGGAAGTGGCACCCCCTT 60.774 55.000 30.84 30.84 40.11 3.95
1589 2352 0.552615 ATAAGGAAGTGGCACCCCCT 60.553 55.000 19.11 19.11 0.00 4.79
1590 2353 0.395724 CATAAGGAAGTGGCACCCCC 60.396 60.000 15.27 15.49 0.00 5.40
1591 2354 0.623723 TCATAAGGAAGTGGCACCCC 59.376 55.000 15.27 15.87 0.00 4.95
1592 2355 2.019156 GCTCATAAGGAAGTGGCACCC 61.019 57.143 15.27 9.55 0.00 4.61
1593 2356 1.383523 GCTCATAAGGAAGTGGCACC 58.616 55.000 15.27 0.00 0.00 5.01
1594 2357 1.065126 AGGCTCATAAGGAAGTGGCAC 60.065 52.381 10.29 10.29 0.00 5.01
1595 2358 1.289160 AGGCTCATAAGGAAGTGGCA 58.711 50.000 0.00 0.00 0.00 4.92
1596 2359 2.293170 GAAGGCTCATAAGGAAGTGGC 58.707 52.381 0.00 0.00 0.00 5.01
1597 2360 2.093447 ACGAAGGCTCATAAGGAAGTGG 60.093 50.000 0.00 0.00 0.00 4.00
1598 2361 2.932614 CACGAAGGCTCATAAGGAAGTG 59.067 50.000 0.00 0.00 0.00 3.16
1599 2362 2.832129 TCACGAAGGCTCATAAGGAAGT 59.168 45.455 0.00 0.00 0.00 3.01
1600 2363 3.118956 AGTCACGAAGGCTCATAAGGAAG 60.119 47.826 0.00 0.00 0.00 3.46
1601 2364 2.832129 AGTCACGAAGGCTCATAAGGAA 59.168 45.455 0.00 0.00 0.00 3.36
1602 2365 2.427453 GAGTCACGAAGGCTCATAAGGA 59.573 50.000 8.88 0.00 0.00 3.36
1603 2366 2.166459 TGAGTCACGAAGGCTCATAAGG 59.834 50.000 11.73 0.00 34.72 2.69
1604 2367 3.510388 TGAGTCACGAAGGCTCATAAG 57.490 47.619 11.73 0.00 34.72 1.73
1606 2369 5.791336 ATTATGAGTCACGAAGGCTCATA 57.209 39.130 23.20 23.20 45.02 2.15
1608 2371 4.433615 GAATTATGAGTCACGAAGGCTCA 58.566 43.478 16.59 16.59 42.49 4.26
1609 2372 3.804873 GGAATTATGAGTCACGAAGGCTC 59.195 47.826 0.00 7.18 0.00 4.70
1610 2373 3.452627 AGGAATTATGAGTCACGAAGGCT 59.547 43.478 0.00 0.00 0.00 4.58
1611 2374 3.798202 AGGAATTATGAGTCACGAAGGC 58.202 45.455 0.00 0.00 0.00 4.35
1612 2375 4.811557 GGAAGGAATTATGAGTCACGAAGG 59.188 45.833 0.00 0.00 0.00 3.46
1613 2376 5.292101 GTGGAAGGAATTATGAGTCACGAAG 59.708 44.000 0.00 0.00 0.00 3.79
1614 2377 5.175859 GTGGAAGGAATTATGAGTCACGAA 58.824 41.667 0.00 0.00 0.00 3.85
1615 2378 4.382685 GGTGGAAGGAATTATGAGTCACGA 60.383 45.833 0.00 0.00 0.00 4.35
1616 2379 3.871594 GGTGGAAGGAATTATGAGTCACG 59.128 47.826 0.00 0.00 0.00 4.35
1617 2380 4.636206 GTGGTGGAAGGAATTATGAGTCAC 59.364 45.833 0.00 0.00 0.00 3.67
1618 2381 4.288366 TGTGGTGGAAGGAATTATGAGTCA 59.712 41.667 0.00 0.00 0.00 3.41
1619 2382 4.843728 TGTGGTGGAAGGAATTATGAGTC 58.156 43.478 0.00 0.00 0.00 3.36
1620 2383 4.927267 TGTGGTGGAAGGAATTATGAGT 57.073 40.909 0.00 0.00 0.00 3.41
1621 2384 5.762825 CATGTGGTGGAAGGAATTATGAG 57.237 43.478 0.00 0.00 0.00 2.90
1717 2480 9.974980 GGTGAAAAAGTTATTGGAGATGTTAAA 57.025 29.630 0.00 0.00 0.00 1.52
1718 2481 9.362151 AGGTGAAAAAGTTATTGGAGATGTTAA 57.638 29.630 0.00 0.00 0.00 2.01
1719 2482 8.934023 AGGTGAAAAAGTTATTGGAGATGTTA 57.066 30.769 0.00 0.00 0.00 2.41
1720 2483 7.839680 AGGTGAAAAAGTTATTGGAGATGTT 57.160 32.000 0.00 0.00 0.00 2.71
1721 2484 9.533831 AATAGGTGAAAAAGTTATTGGAGATGT 57.466 29.630 0.00 0.00 0.00 3.06
1749 2512 9.331282 GGAAAAGTGCTCAGTTATAATGTATCT 57.669 33.333 0.00 0.00 0.00 1.98
1750 2513 9.331282 AGGAAAAGTGCTCAGTTATAATGTATC 57.669 33.333 0.00 0.00 0.00 2.24
1751 2514 9.113838 CAGGAAAAGTGCTCAGTTATAATGTAT 57.886 33.333 0.00 0.00 0.00 2.29
1752 2515 7.065803 GCAGGAAAAGTGCTCAGTTATAATGTA 59.934 37.037 0.00 0.00 37.96 2.29
1753 2516 6.127897 GCAGGAAAAGTGCTCAGTTATAATGT 60.128 38.462 0.00 0.00 37.96 2.71
1754 2517 6.261118 GCAGGAAAAGTGCTCAGTTATAATG 58.739 40.000 0.00 0.00 37.96 1.90
1755 2518 5.358160 GGCAGGAAAAGTGCTCAGTTATAAT 59.642 40.000 0.00 0.00 40.97 1.28
1756 2519 4.700213 GGCAGGAAAAGTGCTCAGTTATAA 59.300 41.667 0.00 0.00 40.97 0.98
1757 2520 4.261801 GGCAGGAAAAGTGCTCAGTTATA 58.738 43.478 0.00 0.00 40.97 0.98
1758 2521 3.084786 GGCAGGAAAAGTGCTCAGTTAT 58.915 45.455 0.00 0.00 40.97 1.89
1759 2522 2.504367 GGCAGGAAAAGTGCTCAGTTA 58.496 47.619 0.00 0.00 40.97 2.24
1760 2523 1.322442 GGCAGGAAAAGTGCTCAGTT 58.678 50.000 0.00 0.00 40.97 3.16
1761 2524 0.538287 GGGCAGGAAAAGTGCTCAGT 60.538 55.000 0.00 0.00 41.42 3.41
1762 2525 0.251077 AGGGCAGGAAAAGTGCTCAG 60.251 55.000 0.00 0.00 44.50 3.35
1763 2526 0.250901 GAGGGCAGGAAAAGTGCTCA 60.251 55.000 0.00 0.00 44.50 4.26
1764 2527 0.037447 AGAGGGCAGGAAAAGTGCTC 59.963 55.000 0.00 0.00 42.18 4.26
1765 2528 0.037447 GAGAGGGCAGGAAAAGTGCT 59.963 55.000 0.00 0.00 40.97 4.40
1766 2529 0.250901 TGAGAGGGCAGGAAAAGTGC 60.251 55.000 0.00 0.00 40.42 4.40
1767 2530 1.349026 TCTGAGAGGGCAGGAAAAGTG 59.651 52.381 0.00 0.00 36.55 3.16
1768 2531 1.349357 GTCTGAGAGGGCAGGAAAAGT 59.651 52.381 0.00 0.00 36.55 2.66
1769 2532 1.627834 AGTCTGAGAGGGCAGGAAAAG 59.372 52.381 0.00 0.00 36.55 2.27
1770 2533 1.734655 AGTCTGAGAGGGCAGGAAAA 58.265 50.000 0.00 0.00 36.55 2.29
1771 2534 2.623418 TAGTCTGAGAGGGCAGGAAA 57.377 50.000 0.00 0.00 36.55 3.13
1772 2535 2.856760 ATAGTCTGAGAGGGCAGGAA 57.143 50.000 0.00 0.00 36.55 3.36
1773 2536 2.856760 AATAGTCTGAGAGGGCAGGA 57.143 50.000 0.00 0.00 36.55 3.86
1774 2537 3.320541 CACTAATAGTCTGAGAGGGCAGG 59.679 52.174 0.00 0.00 36.55 4.85
1775 2538 3.957497 ACACTAATAGTCTGAGAGGGCAG 59.043 47.826 0.00 0.00 37.24 4.85
1776 2539 3.982516 ACACTAATAGTCTGAGAGGGCA 58.017 45.455 0.00 0.00 0.00 5.36
1777 2540 5.346181 AAACACTAATAGTCTGAGAGGGC 57.654 43.478 0.00 0.00 0.00 5.19
1778 2541 6.936279 TGAAAACACTAATAGTCTGAGAGGG 58.064 40.000 0.00 0.00 0.00 4.30
1797 2560 3.372822 GCCGATTATCTGACGGTTGAAAA 59.627 43.478 0.00 0.00 46.95 2.29
1798 2561 2.933906 GCCGATTATCTGACGGTTGAAA 59.066 45.455 0.00 0.00 46.95 2.69
1799 2562 2.167693 AGCCGATTATCTGACGGTTGAA 59.832 45.455 0.00 0.00 46.95 2.69
1800 2563 1.754803 AGCCGATTATCTGACGGTTGA 59.245 47.619 0.00 0.00 46.95 3.18
1801 2564 2.225068 AGCCGATTATCTGACGGTTG 57.775 50.000 0.00 0.00 46.95 3.77
1802 2565 2.550978 CAAGCCGATTATCTGACGGTT 58.449 47.619 0.00 0.00 46.95 4.44
1803 2566 1.202533 CCAAGCCGATTATCTGACGGT 60.203 52.381 0.00 0.00 46.95 4.83
1805 2568 1.860950 CACCAAGCCGATTATCTGACG 59.139 52.381 0.00 0.00 0.00 4.35
1806 2569 1.599542 GCACCAAGCCGATTATCTGAC 59.400 52.381 0.00 0.00 37.23 3.51
1807 2570 1.209261 TGCACCAAGCCGATTATCTGA 59.791 47.619 0.00 0.00 44.83 3.27
1808 2571 1.667236 TGCACCAAGCCGATTATCTG 58.333 50.000 0.00 0.00 44.83 2.90
1809 2572 2.645838 ATGCACCAAGCCGATTATCT 57.354 45.000 0.00 0.00 44.83 1.98
1810 2573 3.715628 AAATGCACCAAGCCGATTATC 57.284 42.857 0.00 0.00 44.83 1.75
1811 2574 4.183101 CAAAAATGCACCAAGCCGATTAT 58.817 39.130 0.00 0.00 44.83 1.28
1812 2575 3.583806 CAAAAATGCACCAAGCCGATTA 58.416 40.909 0.00 0.00 44.83 1.75
1813 2576 2.415776 CAAAAATGCACCAAGCCGATT 58.584 42.857 0.00 0.00 44.83 3.34
1814 2577 1.338011 CCAAAAATGCACCAAGCCGAT 60.338 47.619 0.00 0.00 44.83 4.18
1815 2578 0.033228 CCAAAAATGCACCAAGCCGA 59.967 50.000 0.00 0.00 44.83 5.54
1816 2579 1.567746 GCCAAAAATGCACCAAGCCG 61.568 55.000 0.00 0.00 44.83 5.52
1817 2580 1.236616 GGCCAAAAATGCACCAAGCC 61.237 55.000 0.00 0.00 44.83 4.35
1818 2581 0.534652 TGGCCAAAAATGCACCAAGC 60.535 50.000 0.61 0.00 45.96 4.01
1819 2582 2.188062 ATGGCCAAAAATGCACCAAG 57.812 45.000 10.96 0.00 33.30 3.61
1820 2583 2.228059 CAATGGCCAAAAATGCACCAA 58.772 42.857 10.96 0.00 33.30 3.67
1821 2584 1.544982 CCAATGGCCAAAAATGCACCA 60.545 47.619 10.96 0.00 34.28 4.17
1822 2585 1.166989 CCAATGGCCAAAAATGCACC 58.833 50.000 10.96 0.00 0.00 5.01
1823 2586 2.181954 TCCAATGGCCAAAAATGCAC 57.818 45.000 10.96 0.00 0.00 4.57
1824 2587 3.436577 AATCCAATGGCCAAAAATGCA 57.563 38.095 10.96 0.00 0.00 3.96
1825 2588 3.129113 GGAAATCCAATGGCCAAAAATGC 59.871 43.478 10.96 0.00 35.64 3.56
1826 2589 4.591929 AGGAAATCCAATGGCCAAAAATG 58.408 39.130 10.96 6.89 38.89 2.32
1827 2590 4.537288 AGAGGAAATCCAATGGCCAAAAAT 59.463 37.500 10.96 0.00 38.89 1.82
1828 2591 3.909364 AGAGGAAATCCAATGGCCAAAAA 59.091 39.130 10.96 0.00 38.89 1.94
1829 2592 3.519667 AGAGGAAATCCAATGGCCAAAA 58.480 40.909 10.96 0.00 38.89 2.44
1830 2593 3.188880 AGAGGAAATCCAATGGCCAAA 57.811 42.857 10.96 0.00 38.89 3.28
1831 2594 2.925966 AGAGGAAATCCAATGGCCAA 57.074 45.000 10.96 0.00 38.89 4.52
1832 2595 2.925966 AAGAGGAAATCCAATGGCCA 57.074 45.000 8.56 8.56 38.89 5.36
1833 2596 5.459536 GATTAAGAGGAAATCCAATGGCC 57.540 43.478 0.00 0.00 38.89 5.36
1841 2604 4.881850 TCAAAGCGGGATTAAGAGGAAATC 59.118 41.667 0.00 0.00 33.44 2.17
1842 2605 4.640647 GTCAAAGCGGGATTAAGAGGAAAT 59.359 41.667 0.00 0.00 0.00 2.17
1843 2606 4.007659 GTCAAAGCGGGATTAAGAGGAAA 58.992 43.478 0.00 0.00 0.00 3.13
1844 2607 3.263425 AGTCAAAGCGGGATTAAGAGGAA 59.737 43.478 0.00 0.00 0.00 3.36
1845 2608 2.838202 AGTCAAAGCGGGATTAAGAGGA 59.162 45.455 0.00 0.00 0.00 3.71
1846 2609 3.198872 GAGTCAAAGCGGGATTAAGAGG 58.801 50.000 0.00 0.00 0.00 3.69
1847 2610 2.860735 CGAGTCAAAGCGGGATTAAGAG 59.139 50.000 0.00 0.00 0.00 2.85
1848 2611 2.888594 CGAGTCAAAGCGGGATTAAGA 58.111 47.619 0.00 0.00 0.00 2.10
1849 2612 1.327764 GCGAGTCAAAGCGGGATTAAG 59.672 52.381 0.00 0.00 0.00 1.85
1850 2613 1.066430 AGCGAGTCAAAGCGGGATTAA 60.066 47.619 0.00 0.00 38.61 1.40
1851 2614 0.535335 AGCGAGTCAAAGCGGGATTA 59.465 50.000 0.00 0.00 38.61 1.75
1852 2615 0.535335 TAGCGAGTCAAAGCGGGATT 59.465 50.000 0.00 0.00 38.61 3.01
1853 2616 0.179108 GTAGCGAGTCAAAGCGGGAT 60.179 55.000 0.00 0.00 38.61 3.85
1854 2617 1.214589 GTAGCGAGTCAAAGCGGGA 59.785 57.895 0.00 0.00 38.61 5.14
1855 2618 0.460284 ATGTAGCGAGTCAAAGCGGG 60.460 55.000 0.00 0.00 38.61 6.13
1856 2619 1.324736 GAATGTAGCGAGTCAAAGCGG 59.675 52.381 0.00 0.00 38.61 5.52
1857 2620 1.007011 CGAATGTAGCGAGTCAAAGCG 60.007 52.381 0.00 0.00 38.61 4.68
1858 2621 1.267087 GCGAATGTAGCGAGTCAAAGC 60.267 52.381 0.00 0.00 0.00 3.51
1859 2622 2.263077 AGCGAATGTAGCGAGTCAAAG 58.737 47.619 0.00 0.00 40.04 2.77
1860 2623 2.363788 AGCGAATGTAGCGAGTCAAA 57.636 45.000 0.00 0.00 40.04 2.69
1861 2624 2.162809 TGTAGCGAATGTAGCGAGTCAA 59.837 45.455 0.00 0.00 40.04 3.18
1862 2625 1.741145 TGTAGCGAATGTAGCGAGTCA 59.259 47.619 0.00 0.00 40.04 3.41
1863 2626 2.470196 TGTAGCGAATGTAGCGAGTC 57.530 50.000 0.00 0.00 40.04 3.36
1864 2627 2.933495 TTGTAGCGAATGTAGCGAGT 57.067 45.000 0.00 0.00 40.04 4.18
1865 2628 3.796717 TCAATTGTAGCGAATGTAGCGAG 59.203 43.478 5.13 0.00 40.04 5.03
1866 2629 3.776340 TCAATTGTAGCGAATGTAGCGA 58.224 40.909 5.13 0.00 40.04 4.93
1867 2630 3.796717 TCTCAATTGTAGCGAATGTAGCG 59.203 43.478 5.13 0.00 40.04 4.26
1868 2631 4.210120 CCTCTCAATTGTAGCGAATGTAGC 59.790 45.833 5.13 0.00 0.00 3.58
1869 2632 5.352284 ACCTCTCAATTGTAGCGAATGTAG 58.648 41.667 5.13 0.00 0.00 2.74
1870 2633 5.339008 ACCTCTCAATTGTAGCGAATGTA 57.661 39.130 5.13 0.00 0.00 2.29
1871 2634 4.207891 ACCTCTCAATTGTAGCGAATGT 57.792 40.909 5.13 0.00 0.00 2.71
1872 2635 5.447818 GGAAACCTCTCAATTGTAGCGAATG 60.448 44.000 5.13 0.00 0.00 2.67
1873 2636 4.636206 GGAAACCTCTCAATTGTAGCGAAT 59.364 41.667 5.13 0.00 0.00 3.34
1874 2637 4.000988 GGAAACCTCTCAATTGTAGCGAA 58.999 43.478 5.13 0.00 0.00 4.70
1875 2638 3.596214 GGAAACCTCTCAATTGTAGCGA 58.404 45.455 5.13 0.00 0.00 4.93
1876 2639 2.348666 CGGAAACCTCTCAATTGTAGCG 59.651 50.000 5.13 0.00 0.00 4.26
1877 2640 2.096013 GCGGAAACCTCTCAATTGTAGC 59.904 50.000 5.13 0.00 0.00 3.58
1878 2641 3.600388 AGCGGAAACCTCTCAATTGTAG 58.400 45.455 5.13 4.61 0.00 2.74
1879 2642 3.695830 AGCGGAAACCTCTCAATTGTA 57.304 42.857 5.13 0.00 0.00 2.41
1880 2643 2.568623 AGCGGAAACCTCTCAATTGT 57.431 45.000 5.13 0.00 0.00 2.71
1881 2644 4.878397 AGAATAGCGGAAACCTCTCAATTG 59.122 41.667 0.00 0.00 0.00 2.32
1882 2645 4.878397 CAGAATAGCGGAAACCTCTCAATT 59.122 41.667 0.00 0.00 0.00 2.32
1883 2646 4.446371 CAGAATAGCGGAAACCTCTCAAT 58.554 43.478 0.00 0.00 0.00 2.57
1884 2647 3.369471 CCAGAATAGCGGAAACCTCTCAA 60.369 47.826 0.00 0.00 0.00 3.02
1885 2648 2.168521 CCAGAATAGCGGAAACCTCTCA 59.831 50.000 0.00 0.00 0.00 3.27
1886 2649 2.168728 ACCAGAATAGCGGAAACCTCTC 59.831 50.000 0.00 0.00 0.00 3.20
1887 2650 2.093447 CACCAGAATAGCGGAAACCTCT 60.093 50.000 0.00 0.00 0.00 3.69
1888 2651 2.093658 TCACCAGAATAGCGGAAACCTC 60.094 50.000 0.00 0.00 0.00 3.85
1889 2652 1.906574 TCACCAGAATAGCGGAAACCT 59.093 47.619 0.00 0.00 0.00 3.50
1890 2653 2.007608 GTCACCAGAATAGCGGAAACC 58.992 52.381 0.00 0.00 0.00 3.27
1891 2654 2.695359 TGTCACCAGAATAGCGGAAAC 58.305 47.619 0.00 0.00 0.00 2.78
1892 2655 3.410631 TTGTCACCAGAATAGCGGAAA 57.589 42.857 0.00 0.00 0.00 3.13
1893 2656 3.627395 ATTGTCACCAGAATAGCGGAA 57.373 42.857 0.00 0.00 0.00 4.30
1894 2657 3.627395 AATTGTCACCAGAATAGCGGA 57.373 42.857 0.00 0.00 0.00 5.54
1895 2658 4.414852 CAAAATTGTCACCAGAATAGCGG 58.585 43.478 0.00 0.00 0.00 5.52
1896 2659 4.414852 CCAAAATTGTCACCAGAATAGCG 58.585 43.478 0.00 0.00 0.00 4.26
1897 2660 4.220602 ACCCAAAATTGTCACCAGAATAGC 59.779 41.667 0.00 0.00 0.00 2.97
1898 2661 5.713025 CACCCAAAATTGTCACCAGAATAG 58.287 41.667 0.00 0.00 0.00 1.73
1899 2662 4.021544 GCACCCAAAATTGTCACCAGAATA 60.022 41.667 0.00 0.00 0.00 1.75
1900 2663 3.244181 GCACCCAAAATTGTCACCAGAAT 60.244 43.478 0.00 0.00 0.00 2.40
1901 2664 2.102252 GCACCCAAAATTGTCACCAGAA 59.898 45.455 0.00 0.00 0.00 3.02
1902 2665 1.686052 GCACCCAAAATTGTCACCAGA 59.314 47.619 0.00 0.00 0.00 3.86
1903 2666 1.270252 GGCACCCAAAATTGTCACCAG 60.270 52.381 0.00 0.00 0.00 4.00
1904 2667 0.755686 GGCACCCAAAATTGTCACCA 59.244 50.000 0.00 0.00 0.00 4.17
1905 2668 1.047801 AGGCACCCAAAATTGTCACC 58.952 50.000 0.00 0.00 0.00 4.02
1906 2669 1.270252 CCAGGCACCCAAAATTGTCAC 60.270 52.381 0.00 0.00 0.00 3.67
1907 2670 1.047002 CCAGGCACCCAAAATTGTCA 58.953 50.000 0.00 0.00 0.00 3.58
1908 2671 1.047801 ACCAGGCACCCAAAATTGTC 58.952 50.000 0.00 0.00 0.00 3.18
1909 2672 0.758123 CACCAGGCACCCAAAATTGT 59.242 50.000 0.00 0.00 0.00 2.71
1910 2673 0.758123 ACACCAGGCACCCAAAATTG 59.242 50.000 0.00 0.00 0.00 2.32
1911 2674 2.390225 TACACCAGGCACCCAAAATT 57.610 45.000 0.00 0.00 0.00 1.82
1912 2675 2.390225 TTACACCAGGCACCCAAAAT 57.610 45.000 0.00 0.00 0.00 1.82
1913 2676 2.160721 TTTACACCAGGCACCCAAAA 57.839 45.000 0.00 0.00 0.00 2.44
1914 2677 2.160721 TTTTACACCAGGCACCCAAA 57.839 45.000 0.00 0.00 0.00 3.28
1915 2678 2.366916 CAATTTTACACCAGGCACCCAA 59.633 45.455 0.00 0.00 0.00 4.12
1916 2679 1.967066 CAATTTTACACCAGGCACCCA 59.033 47.619 0.00 0.00 0.00 4.51
1917 2680 1.275010 CCAATTTTACACCAGGCACCC 59.725 52.381 0.00 0.00 0.00 4.61
1918 2681 1.275010 CCCAATTTTACACCAGGCACC 59.725 52.381 0.00 0.00 0.00 5.01
1919 2682 1.337728 GCCCAATTTTACACCAGGCAC 60.338 52.381 0.00 0.00 38.79 5.01
1920 2683 0.972883 GCCCAATTTTACACCAGGCA 59.027 50.000 0.00 0.00 38.79 4.75
1921 2684 0.972883 TGCCCAATTTTACACCAGGC 59.027 50.000 0.00 0.00 39.41 4.85
1922 2685 3.760580 TTTGCCCAATTTTACACCAGG 57.239 42.857 0.00 0.00 0.00 4.45
1923 2686 4.455190 CCATTTTGCCCAATTTTACACCAG 59.545 41.667 0.00 0.00 0.00 4.00
1924 2687 4.392940 CCATTTTGCCCAATTTTACACCA 58.607 39.130 0.00 0.00 0.00 4.17
1925 2688 3.755905 CCCATTTTGCCCAATTTTACACC 59.244 43.478 0.00 0.00 0.00 4.16
1926 2689 3.190327 GCCCATTTTGCCCAATTTTACAC 59.810 43.478 0.00 0.00 0.00 2.90
1927 2690 3.073650 AGCCCATTTTGCCCAATTTTACA 59.926 39.130 0.00 0.00 0.00 2.41
1928 2691 3.684908 AGCCCATTTTGCCCAATTTTAC 58.315 40.909 0.00 0.00 0.00 2.01
1929 2692 4.042684 AGAAGCCCATTTTGCCCAATTTTA 59.957 37.500 0.00 0.00 0.00 1.52
1930 2693 2.976068 AGCCCATTTTGCCCAATTTT 57.024 40.000 0.00 0.00 0.00 1.82
1931 2694 2.376181 AGAAGCCCATTTTGCCCAATTT 59.624 40.909 0.00 0.00 0.00 1.82
1932 2695 1.987368 AGAAGCCCATTTTGCCCAATT 59.013 42.857 0.00 0.00 0.00 2.32
1933 2696 1.279846 CAGAAGCCCATTTTGCCCAAT 59.720 47.619 0.00 0.00 0.00 3.16
1934 2697 0.686224 CAGAAGCCCATTTTGCCCAA 59.314 50.000 0.00 0.00 0.00 4.12
1935 2698 1.829523 GCAGAAGCCCATTTTGCCCA 61.830 55.000 0.00 0.00 41.90 5.36
1936 2699 1.078918 GCAGAAGCCCATTTTGCCC 60.079 57.895 0.00 0.00 41.90 5.36
1937 2700 0.035176 TTGCAGAAGCCCATTTTGCC 59.965 50.000 1.32 0.00 45.97 4.52
1938 2701 1.270465 ACTTGCAGAAGCCCATTTTGC 60.270 47.619 0.00 0.00 46.55 3.68
1939 2702 2.224113 ACACTTGCAGAAGCCCATTTTG 60.224 45.455 0.00 0.00 41.13 2.44
1940 2703 2.036346 GACACTTGCAGAAGCCCATTTT 59.964 45.455 0.00 0.00 41.13 1.82
1941 2704 1.615392 GACACTTGCAGAAGCCCATTT 59.385 47.619 0.00 0.00 41.13 2.32
1942 2705 1.251251 GACACTTGCAGAAGCCCATT 58.749 50.000 0.00 0.00 41.13 3.16
1943 2706 0.610232 GGACACTTGCAGAAGCCCAT 60.610 55.000 0.00 0.00 41.13 4.00
1944 2707 1.228245 GGACACTTGCAGAAGCCCA 60.228 57.895 0.00 0.00 41.13 5.36
1945 2708 2.328099 CGGACACTTGCAGAAGCCC 61.328 63.158 0.00 0.00 41.13 5.19
1946 2709 2.970974 GCGGACACTTGCAGAAGCC 61.971 63.158 0.00 0.00 41.13 4.35
1947 2710 1.510480 AAGCGGACACTTGCAGAAGC 61.510 55.000 0.00 0.00 42.57 3.86
1948 2711 0.236711 CAAGCGGACACTTGCAGAAG 59.763 55.000 0.00 0.00 40.53 2.85
1949 2712 2.320215 CAAGCGGACACTTGCAGAA 58.680 52.632 0.00 0.00 40.53 3.02
1950 2713 4.047834 CAAGCGGACACTTGCAGA 57.952 55.556 0.00 0.00 40.53 4.26
1955 2718 1.237285 GGATGCACAAGCGGACACTT 61.237 55.000 0.00 0.00 46.23 3.16
1956 2719 1.672356 GGATGCACAAGCGGACACT 60.672 57.895 0.00 0.00 46.23 3.55
1957 2720 0.391130 TAGGATGCACAAGCGGACAC 60.391 55.000 0.00 0.00 46.23 3.67
1958 2721 0.108186 CTAGGATGCACAAGCGGACA 60.108 55.000 0.00 0.00 46.23 4.02
1959 2722 0.175760 TCTAGGATGCACAAGCGGAC 59.824 55.000 0.00 0.00 46.23 4.79
1960 2723 0.901827 TTCTAGGATGCACAAGCGGA 59.098 50.000 0.00 0.00 46.23 5.54
1961 2724 1.737838 TTTCTAGGATGCACAAGCGG 58.262 50.000 0.00 0.00 46.23 5.52
1962 2725 3.829886 TTTTTCTAGGATGCACAAGCG 57.170 42.857 0.00 0.00 46.23 4.68
1979 2742 7.785028 AGAAAGGACCTGTTTCTTCCTATTTTT 59.215 33.333 0.00 0.00 40.61 1.94
1980 2743 7.298374 AGAAAGGACCTGTTTCTTCCTATTTT 58.702 34.615 0.00 0.00 40.61 1.82
1981 2744 6.853490 AGAAAGGACCTGTTTCTTCCTATTT 58.147 36.000 0.00 0.00 40.61 1.40
1982 2745 6.455690 AGAAAGGACCTGTTTCTTCCTATT 57.544 37.500 0.00 0.00 40.61 1.73
1983 2746 7.569599 TTAGAAAGGACCTGTTTCTTCCTAT 57.430 36.000 12.65 0.00 40.61 2.57
1984 2747 7.383156 TTTAGAAAGGACCTGTTTCTTCCTA 57.617 36.000 12.65 0.00 40.61 2.94
1985 2748 5.906772 TTAGAAAGGACCTGTTTCTTCCT 57.093 39.130 12.65 0.00 40.61 3.36
1986 2749 6.561737 CTTTAGAAAGGACCTGTTTCTTCC 57.438 41.667 12.65 0.00 40.61 3.46
2000 2763 6.650120 TGGTCTAATGCCTACCTTTAGAAAG 58.350 40.000 0.00 0.00 40.07 2.62
2001 2764 6.442564 TCTGGTCTAATGCCTACCTTTAGAAA 59.557 38.462 0.00 0.00 40.07 2.52
2002 2765 5.962031 TCTGGTCTAATGCCTACCTTTAGAA 59.038 40.000 0.00 0.00 40.07 2.10
2003 2766 5.525484 TCTGGTCTAATGCCTACCTTTAGA 58.475 41.667 0.00 0.00 37.66 2.10
2004 2767 5.364157 ACTCTGGTCTAATGCCTACCTTTAG 59.636 44.000 0.00 0.00 34.23 1.85
2005 2768 5.278061 ACTCTGGTCTAATGCCTACCTTTA 58.722 41.667 0.00 0.00 34.23 1.85
2006 2769 4.104831 ACTCTGGTCTAATGCCTACCTTT 58.895 43.478 0.00 0.00 34.23 3.11
2007 2770 3.725634 ACTCTGGTCTAATGCCTACCTT 58.274 45.455 0.00 0.00 34.23 3.50
2008 2771 3.406512 ACTCTGGTCTAATGCCTACCT 57.593 47.619 0.00 0.00 34.23 3.08
2009 2772 4.443621 GAAACTCTGGTCTAATGCCTACC 58.556 47.826 0.00 0.00 0.00 3.18
2010 2773 4.113354 CGAAACTCTGGTCTAATGCCTAC 58.887 47.826 0.00 0.00 0.00 3.18
2011 2774 3.767673 ACGAAACTCTGGTCTAATGCCTA 59.232 43.478 0.00 0.00 0.00 3.93
2012 2775 2.567615 ACGAAACTCTGGTCTAATGCCT 59.432 45.455 0.00 0.00 0.00 4.75
2013 2776 2.673368 CACGAAACTCTGGTCTAATGCC 59.327 50.000 0.00 0.00 0.00 4.40
2014 2777 3.585862 TCACGAAACTCTGGTCTAATGC 58.414 45.455 0.00 0.00 0.00 3.56
2015 2778 3.614616 GCTCACGAAACTCTGGTCTAATG 59.385 47.826 0.00 0.00 0.00 1.90
2016 2779 3.368531 GGCTCACGAAACTCTGGTCTAAT 60.369 47.826 0.00 0.00 0.00 1.73
2017 2780 2.029290 GGCTCACGAAACTCTGGTCTAA 60.029 50.000 0.00 0.00 0.00 2.10
2018 2781 1.544691 GGCTCACGAAACTCTGGTCTA 59.455 52.381 0.00 0.00 0.00 2.59
2019 2782 0.318762 GGCTCACGAAACTCTGGTCT 59.681 55.000 0.00 0.00 0.00 3.85
2020 2783 2.828933 GGCTCACGAAACTCTGGTC 58.171 57.895 0.00 0.00 0.00 4.02
2031 2794 1.298713 CGATCTTCTCCGGCTCACG 60.299 63.158 0.00 0.00 43.80 4.35
2032 2795 0.671251 ATCGATCTTCTCCGGCTCAC 59.329 55.000 0.00 0.00 0.00 3.51
2033 2796 2.271944 TATCGATCTTCTCCGGCTCA 57.728 50.000 0.00 0.00 0.00 4.26
2034 2797 3.570559 CTTTATCGATCTTCTCCGGCTC 58.429 50.000 0.00 0.00 0.00 4.70
2035 2798 2.288518 GCTTTATCGATCTTCTCCGGCT 60.289 50.000 0.00 0.00 0.00 5.52
2036 2799 2.062519 GCTTTATCGATCTTCTCCGGC 58.937 52.381 0.00 0.00 0.00 6.13
2037 2800 3.651803 AGCTTTATCGATCTTCTCCGG 57.348 47.619 0.00 0.00 0.00 5.14
2038 2801 6.003234 TCTAAGCTTTATCGATCTTCTCCG 57.997 41.667 3.20 0.00 0.00 4.63
2039 2802 7.430441 AGTTCTAAGCTTTATCGATCTTCTCC 58.570 38.462 3.20 0.00 0.00 3.71
2040 2803 8.751335 CAAGTTCTAAGCTTTATCGATCTTCTC 58.249 37.037 3.20 0.00 0.00 2.87
2041 2804 7.223777 GCAAGTTCTAAGCTTTATCGATCTTCT 59.776 37.037 3.20 0.00 0.00 2.85
2042 2805 7.223777 AGCAAGTTCTAAGCTTTATCGATCTTC 59.776 37.037 3.20 3.35 34.37 2.87
2043 2806 7.044798 AGCAAGTTCTAAGCTTTATCGATCTT 58.955 34.615 3.20 1.34 34.37 2.40
2044 2807 6.578023 AGCAAGTTCTAAGCTTTATCGATCT 58.422 36.000 3.20 0.00 34.37 2.75
2045 2808 6.345408 CGAGCAAGTTCTAAGCTTTATCGATC 60.345 42.308 3.20 0.00 39.02 3.69
2046 2809 5.460419 CGAGCAAGTTCTAAGCTTTATCGAT 59.540 40.000 3.20 2.16 39.02 3.59
2047 2810 4.798907 CGAGCAAGTTCTAAGCTTTATCGA 59.201 41.667 3.20 0.00 39.02 3.59
2048 2811 4.563184 ACGAGCAAGTTCTAAGCTTTATCG 59.437 41.667 3.20 1.80 39.02 2.92
2049 2812 6.410243 AACGAGCAAGTTCTAAGCTTTATC 57.590 37.500 3.20 0.00 39.02 1.75
2050 2813 6.603095 CAAACGAGCAAGTTCTAAGCTTTAT 58.397 36.000 3.20 0.00 39.02 1.40
2051 2814 5.560183 GCAAACGAGCAAGTTCTAAGCTTTA 60.560 40.000 3.20 0.00 39.02 1.85
2052 2815 4.789802 GCAAACGAGCAAGTTCTAAGCTTT 60.790 41.667 3.20 0.00 39.02 3.51
2053 2816 3.304057 GCAAACGAGCAAGTTCTAAGCTT 60.304 43.478 3.48 3.48 39.02 3.74
2054 2817 2.224314 GCAAACGAGCAAGTTCTAAGCT 59.776 45.455 0.00 0.00 42.17 3.74
2055 2818 2.032030 TGCAAACGAGCAAGTTCTAAGC 60.032 45.455 0.00 2.07 42.46 3.09
2056 2819 3.364366 CCTGCAAACGAGCAAGTTCTAAG 60.364 47.826 0.00 0.00 45.13 2.18
2057 2820 2.548057 CCTGCAAACGAGCAAGTTCTAA 59.452 45.455 0.00 0.00 45.13 2.10
2058 2821 2.143122 CCTGCAAACGAGCAAGTTCTA 58.857 47.619 0.00 0.00 45.13 2.10
2059 2822 0.947244 CCTGCAAACGAGCAAGTTCT 59.053 50.000 0.00 0.00 45.13 3.01
2060 2823 0.944386 TCCTGCAAACGAGCAAGTTC 59.056 50.000 0.00 0.00 45.13 3.01
2061 2824 0.947244 CTCCTGCAAACGAGCAAGTT 59.053 50.000 0.00 0.00 45.13 2.66
2062 2825 0.886490 CCTCCTGCAAACGAGCAAGT 60.886 55.000 0.00 0.00 45.13 3.16
2063 2826 0.603707 TCCTCCTGCAAACGAGCAAG 60.604 55.000 0.00 0.00 45.13 4.01
2064 2827 0.603707 CTCCTCCTGCAAACGAGCAA 60.604 55.000 0.00 0.00 45.13 3.91
2065 2828 1.004560 CTCCTCCTGCAAACGAGCA 60.005 57.895 0.00 0.00 43.35 4.26
2066 2829 1.743252 CCTCCTCCTGCAAACGAGC 60.743 63.158 0.00 0.00 0.00 5.03
2067 2830 1.743252 GCCTCCTCCTGCAAACGAG 60.743 63.158 0.00 0.00 0.00 4.18
2068 2831 2.347490 GCCTCCTCCTGCAAACGA 59.653 61.111 0.00 0.00 0.00 3.85
2069 2832 3.121030 CGCCTCCTCCTGCAAACG 61.121 66.667 0.00 0.00 0.00 3.60
2070 2833 2.747855 CCGCCTCCTCCTGCAAAC 60.748 66.667 0.00 0.00 0.00 2.93
2071 2834 2.927856 TCCGCCTCCTCCTGCAAA 60.928 61.111 0.00 0.00 0.00 3.68
2072 2835 3.706373 GTCCGCCTCCTCCTGCAA 61.706 66.667 0.00 0.00 0.00 4.08
2073 2836 4.704103 AGTCCGCCTCCTCCTGCA 62.704 66.667 0.00 0.00 0.00 4.41
2074 2837 4.154347 CAGTCCGCCTCCTCCTGC 62.154 72.222 0.00 0.00 0.00 4.85
2075 2838 3.465403 CCAGTCCGCCTCCTCCTG 61.465 72.222 0.00 0.00 0.00 3.86
2076 2839 3.673597 TCCAGTCCGCCTCCTCCT 61.674 66.667 0.00 0.00 0.00 3.69
2077 2840 3.462678 GTCCAGTCCGCCTCCTCC 61.463 72.222 0.00 0.00 0.00 4.30
2078 2841 3.462678 GGTCCAGTCCGCCTCCTC 61.463 72.222 0.00 0.00 0.00 3.71
2079 2842 4.316823 TGGTCCAGTCCGCCTCCT 62.317 66.667 0.00 0.00 0.00 3.69
2080 2843 4.083862 GTGGTCCAGTCCGCCTCC 62.084 72.222 0.00 0.00 32.43 4.30
2081 2844 4.436998 CGTGGTCCAGTCCGCCTC 62.437 72.222 0.00 0.00 34.83 4.70
2085 2848 4.742201 CAGCCGTGGTCCAGTCCG 62.742 72.222 0.00 0.00 0.00 4.79
2086 2849 2.391724 TTTCAGCCGTGGTCCAGTCC 62.392 60.000 0.00 0.00 0.00 3.85
2087 2850 1.070786 TTTCAGCCGTGGTCCAGTC 59.929 57.895 0.00 0.00 0.00 3.51
2088 2851 1.227853 GTTTCAGCCGTGGTCCAGT 60.228 57.895 0.00 0.00 0.00 4.00
2089 2852 1.071471 AGTTTCAGCCGTGGTCCAG 59.929 57.895 0.00 0.00 0.00 3.86
2090 2853 1.227823 CAGTTTCAGCCGTGGTCCA 60.228 57.895 0.00 0.00 0.00 4.02
2091 2854 2.617274 GCAGTTTCAGCCGTGGTCC 61.617 63.158 0.00 0.00 0.00 4.46
2092 2855 2.617274 GGCAGTTTCAGCCGTGGTC 61.617 63.158 0.00 0.00 43.15 4.02
2093 2856 2.594592 GGCAGTTTCAGCCGTGGT 60.595 61.111 0.00 0.00 43.15 4.16
2099 2862 2.647297 GTGCCTGGCAGTTTCAGC 59.353 61.111 24.10 9.69 40.08 4.26
2100 2863 2.620112 CCGTGCCTGGCAGTTTCAG 61.620 63.158 24.10 9.18 40.08 3.02
2101 2864 2.594303 CCGTGCCTGGCAGTTTCA 60.594 61.111 24.10 5.53 40.08 2.69
2102 2865 2.281484 TCCGTGCCTGGCAGTTTC 60.281 61.111 24.10 9.43 40.08 2.78
2103 2866 1.764571 TAGTCCGTGCCTGGCAGTTT 61.765 55.000 24.10 8.85 40.08 2.66
2104 2867 1.764571 TTAGTCCGTGCCTGGCAGTT 61.765 55.000 24.10 8.48 40.08 3.16
2105 2868 1.764571 TTTAGTCCGTGCCTGGCAGT 61.765 55.000 24.10 5.39 40.08 4.40
2106 2869 0.605319 TTTTAGTCCGTGCCTGGCAG 60.605 55.000 24.10 15.68 40.08 4.85
2107 2870 0.605319 CTTTTAGTCCGTGCCTGGCA 60.605 55.000 19.30 19.30 35.60 4.92
2108 2871 1.923227 GCTTTTAGTCCGTGCCTGGC 61.923 60.000 12.87 12.87 0.00 4.85
2109 2872 0.321653 AGCTTTTAGTCCGTGCCTGG 60.322 55.000 0.00 0.00 0.00 4.45
2110 2873 1.523758 AAGCTTTTAGTCCGTGCCTG 58.476 50.000 0.00 0.00 0.00 4.85
2111 2874 2.271944 AAAGCTTTTAGTCCGTGCCT 57.728 45.000 5.69 0.00 0.00 4.75
2112 2875 4.155280 TGATAAAAGCTTTTAGTCCGTGCC 59.845 41.667 29.69 14.77 36.22 5.01
2113 2876 5.291293 TGATAAAAGCTTTTAGTCCGTGC 57.709 39.130 29.69 16.02 36.22 5.34
2114 2877 6.148811 TCCTTGATAAAAGCTTTTAGTCCGTG 59.851 38.462 29.69 18.62 36.22 4.94
2115 2878 6.235664 TCCTTGATAAAAGCTTTTAGTCCGT 58.764 36.000 29.69 17.04 36.22 4.69
2116 2879 6.737254 TCCTTGATAAAAGCTTTTAGTCCG 57.263 37.500 29.69 19.64 36.22 4.79
2117 2880 8.191446 GGAATCCTTGATAAAAGCTTTTAGTCC 58.809 37.037 29.69 22.28 36.22 3.85
2118 2881 8.191446 GGGAATCCTTGATAAAAGCTTTTAGTC 58.809 37.037 29.69 25.14 36.22 2.59
2119 2882 7.148069 CGGGAATCCTTGATAAAAGCTTTTAGT 60.148 37.037 29.69 20.10 36.22 2.24
2120 2883 7.067008 TCGGGAATCCTTGATAAAAGCTTTTAG 59.933 37.037 29.69 20.50 36.22 1.85
2121 2884 6.887545 TCGGGAATCCTTGATAAAAGCTTTTA 59.112 34.615 28.78 28.78 37.08 1.52
2122 2885 5.714806 TCGGGAATCCTTGATAAAAGCTTTT 59.285 36.000 26.50 26.50 0.00 2.27
2123 2886 5.261216 TCGGGAATCCTTGATAAAAGCTTT 58.739 37.500 5.69 5.69 0.00 3.51
2124 2887 4.855340 TCGGGAATCCTTGATAAAAGCTT 58.145 39.130 0.00 0.00 0.00 3.74
2125 2888 4.080299 ACTCGGGAATCCTTGATAAAAGCT 60.080 41.667 0.00 0.00 0.00 3.74
2126 2889 4.200092 ACTCGGGAATCCTTGATAAAAGC 58.800 43.478 0.00 0.00 0.00 3.51
2127 2890 5.428253 TGACTCGGGAATCCTTGATAAAAG 58.572 41.667 0.00 0.00 0.00 2.27
2128 2891 5.429681 TGACTCGGGAATCCTTGATAAAA 57.570 39.130 0.00 0.00 0.00 1.52
2129 2892 5.429681 TTGACTCGGGAATCCTTGATAAA 57.570 39.130 0.00 0.00 0.00 1.40
2130 2893 5.183228 GTTTGACTCGGGAATCCTTGATAA 58.817 41.667 0.00 0.00 0.00 1.75
2131 2894 4.679639 CGTTTGACTCGGGAATCCTTGATA 60.680 45.833 0.00 0.00 0.00 2.15
2132 2895 3.610911 GTTTGACTCGGGAATCCTTGAT 58.389 45.455 0.00 0.00 0.00 2.57
2133 2896 2.611971 CGTTTGACTCGGGAATCCTTGA 60.612 50.000 0.00 0.00 0.00 3.02
2134 2897 1.732259 CGTTTGACTCGGGAATCCTTG 59.268 52.381 0.00 0.00 0.00 3.61
2135 2898 1.621814 TCGTTTGACTCGGGAATCCTT 59.378 47.619 0.00 0.00 0.00 3.36
2136 2899 1.067071 GTCGTTTGACTCGGGAATCCT 60.067 52.381 0.00 0.00 42.08 3.24
2137 2900 1.356938 GTCGTTTGACTCGGGAATCC 58.643 55.000 0.00 0.00 42.08 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.