AutoCloner

Multiple sequence alignment - TraesCS1D01G144400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G144400	chr1D	100.000	5750	0	0	1	5750	199840218	199834469	0.000000e+00	10619.0
1	TraesCS1D01G144400	chr1D	96.469	623	21	1	1	623	435971103	435970482	0.000000e+00	1027.0
2	TraesCS1D01G144400	chr1A	95.447	4898	124	31	620	5440	252286377	252281502	0.000000e+00	7718.0
3	TraesCS1D01G144400	chr1A	98.418	316	5	0	5435	5750	252280701	252280386	1.810000e-154	556.0
4	TraesCS1D01G144400	chr1B	94.468	3344	130	19	1726	5043	286323884	286320570	0.000000e+00	5099.0
5	TraesCS1D01G144400	chr1B	91.657	887	43	16	688	1571	286324827	286323969	0.000000e+00	1199.0
6	TraesCS1D01G144400	chr1B	93.112	421	15	7	5040	5457	286320489	286320080	6.370000e-169	604.0
7	TraesCS1D01G144400	chr1B	89.726	292	21	4	5460	5750	286319952	286319669	1.180000e-96	364.0
8	TraesCS1D01G144400	chr1B	87.500	128	14	2	496	622	349540234	349540108	4.640000e-31	147.0
9	TraesCS1D01G144400	chr1B	98.214	56	1	0	1577	1632	286323940	286323885	1.320000e-16	99.0
10	TraesCS1D01G144400	chr6D	96.950	623	19	0	1	623	426338423	426339045	0.000000e+00	1046.0
11	TraesCS1D01G144400	chr6D	88.468	555	55	6	2438	2987	461003323	461002773	0.000000e+00	662.0
12	TraesCS1D01G144400	chr6D	89.634	328	29	3	2438	2760	435548113	435547786	4.150000e-111	412.0
13	TraesCS1D01G144400	chr3D	97.440	586	14	1	1	586	44063052	44063636	0.000000e+00	998.0
14	TraesCS1D01G144400	chr3D	95.484	620	16	1	1	620	597285534	597286141	0.000000e+00	979.0
15	TraesCS1D01G144400	chr3D	87.302	126	13	2	496	620	1692091	1691968	2.160000e-29	141.0
16	TraesCS1D01G144400	chr5D	89.009	555	52	5	2438	2987	35871320	35870770	0.000000e+00	678.0
17	TraesCS1D01G144400	chr5D	95.652	46	0	2	5249	5293	445385706	445385662	7.990000e-09	73.1
18	TraesCS1D01G144400	chrUn	89.174	545	50	6	2458	3000	45879889	45880426	0.000000e+00	671.0
19	TraesCS1D01G144400	chrUn	91.667	48	2	2	5247	5292	321281826	321281779	1.340000e-06	65.8
20	TraesCS1D01G144400	chrUn	91.667	48	2	2	5247	5292	330018439	330018392	1.340000e-06	65.8
21	TraesCS1D01G144400	chrUn	91.667	48	2	2	5247	5292	336527306	336527259	1.340000e-06	65.8
22	TraesCS1D01G144400	chr5A	88.768	552	53	6	2438	2984	324967379	324967926	0.000000e+00	667.0
23	TraesCS1D01G144400	chr5A	87.037	54	5	2	5257	5309	495329372	495329320	6.220000e-05	60.2
24	TraesCS1D01G144400	chr5B	89.823	226	19	2	2673	2897	310935011	310934789	2.620000e-73	287.0
25	TraesCS1D01G144400	chr5B	89.381	226	20	4	2673	2897	310864226	310864004	1.220000e-71	281.0
26	TraesCS1D01G144400	chr5B	88.889	126	12	2	496	620	512208371	512208495	2.770000e-33	154.0
27	TraesCS1D01G144400	chr5B	93.333	45	2	1	5249	5292	440022865	440022909	1.340000e-06	65.8
28	TraesCS1D01G144400	chr2A	86.331	139	18	1	485	623	653043248	653043111	3.590000e-32	150.0
29	TraesCS1D01G144400	chr7B	86.923	130	17	0	496	625	100395911	100395782	4.640000e-31	147.0
30	TraesCS1D01G144400	chr7B	86.885	61	6	1	5233	5293	119964372	119964314	3.720000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G144400	chr1D	199834469	199840218	5749	True	10619	10619	100.0000	1	5750	1	chr1D.!!$R1	5749
1	TraesCS1D01G144400	chr1D	435970482	435971103	621	True	1027	1027	96.4690	1	623	1	chr1D.!!$R2	622
2	TraesCS1D01G144400	chr1A	252280386	252286377	5991	True	4137	7718	96.9325	620	5750	2	chr1A.!!$R1	5130
3	TraesCS1D01G144400	chr1B	286319669	286324827	5158	True	1473	5099	93.4354	688	5750	5	chr1B.!!$R2	5062
4	TraesCS1D01G144400	chr6D	426338423	426339045	622	False	1046	1046	96.9500	1	623	1	chr6D.!!$F1	622
5	TraesCS1D01G144400	chr6D	461002773	461003323	550	True	662	662	88.4680	2438	2987	1	chr6D.!!$R2	549
6	TraesCS1D01G144400	chr3D	44063052	44063636	584	False	998	998	97.4400	1	586	1	chr3D.!!$F1	585
7	TraesCS1D01G144400	chr3D	597285534	597286141	607	False	979	979	95.4840	1	620	1	chr3D.!!$F2	619
8	TraesCS1D01G144400	chr5D	35870770	35871320	550	True	678	678	89.0090	2438	2987	1	chr5D.!!$R1	549
9	TraesCS1D01G144400	chrUn	45879889	45880426	537	False	671	671	89.1740	2458	3000	1	chrUn.!!$F1	542
10	TraesCS1D01G144400	chr5A	324967379	324967926	547	False	667	667	88.7680	2438	2984	1	chr5A.!!$F1	546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
805	813	0.955919	GACTGGCTTGGAGAAACCCG	60.956	60.000	0.00	38.0	5.28	F
1467	1510	0.377203	CGGAGTTATTTGGAAGCGCC	59.623	55.000	2.29	37.1	6.53	F
2760	2834	1.360551	CGAGCCAGGTGATACTCGG	59.639	63.158	5.71	46.2	4.63	F
3606	3692	0.459237	CACAGTCTCCACTCATCGCC	60.459	60.000	0.00	0.0	5.54	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2635	2709	0.629058	TGGGAGGGGAAAACCATAGC	59.371	55.000	0.00	42.91	2.97	R
3061	3143	1.281867	TCAAATTCCCTGACAGCCGAT	59.718	47.619	0.00	0.00	4.18	R
3870	3956	1.919654	TCCCAAGGCCAATGCTACTAA	59.080	47.619	5.01	37.74	2.24	R
5499	6630	1.171308	CCCAAGGTGCAACATGAGAG	58.829	55.000	8.90	39.98	3.20	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
169	170	2.202797	CTCGTCAGCGTCCATGGG	60.203	66.667	13.02	0.00	39.49	4.00
175	176	3.640407	AGCGTCCATGGGCACTGT	61.640	61.111	18.31	0.00	0.00	3.55
318	319	1.348538	CGCGTCGGTGCTTGTCATTA	61.349	55.000	0.00	0.00	0.00	1.90
497	498	6.882140	ACCACGTTATAATTTGTCTTGATCCA	59.118	34.615	0.00	0.00	0.00	3.41
623	625	7.391620	TCTTAGTATCCAAACAACCACTTAGG	58.608	38.462	0.00	0.00	45.67	2.69
634	636	1.697982	ACCACTTAGGCGGTTTCTTCT	59.302	47.619	0.00	0.00	43.14	2.85
656	658	2.768492	GCGCTTTCCTGATGGCCTG	61.768	63.158	3.32	0.00	0.00	4.85
709	711	4.709886	ACTTAAAATATGACCTGGGCCAAC	59.290	41.667	8.04	2.68	0.00	3.77
712	714	2.442236	ATATGACCTGGGCCAACAAG	57.558	50.000	8.04	0.00	0.00	3.16
805	813	0.955919	GACTGGCTTGGAGAAACCCG	60.956	60.000	0.00	0.00	38.00	5.28
828	836	4.749310	AACTCCTGCTGCTCGCCG	62.749	66.667	0.00	0.00	38.05	6.46
899	907	3.751175	CAGACTTGTCGACTTCTCTCTCT	59.249	47.826	17.92	4.18	0.00	3.10
972	980	2.808321	GTCCGCTTCCGTTCCGTC	60.808	66.667	0.00	0.00	0.00	4.79
1193	1201	0.529378	CTTCCCAAGGTACGTACGCT	59.471	55.000	16.72	14.02	0.00	5.07
1197	1205	1.226491	CAAGGTACGTACGCTCCCG	60.226	63.158	16.72	8.34	41.14	5.14
1198	1206	2.409870	AAGGTACGTACGCTCCCGG	61.410	63.158	16.72	0.00	39.22	5.73
1279	1310	5.401531	TGTCCTGTTGATAGTACCTTGTC	57.598	43.478	0.00	0.00	0.00	3.18
1324	1355	0.779997	AAGCCTGGAGACACCCAAAT	59.220	50.000	0.00	0.00	35.47	2.32
1383	1419	5.396484	CAGAAATCGTTGTCGTAAGTAGGA	58.604	41.667	0.00	0.00	38.33	2.94
1467	1510	0.377203	CGGAGTTATTTGGAAGCGCC	59.623	55.000	2.29	0.00	37.10	6.53
1542	1585	3.908382	GCATCGTGTGTGACTTCAAATTC	59.092	43.478	0.00	0.00	0.00	2.17
1550	1593	3.882888	TGTGACTTCAAATTCTGGTGTCC	59.117	43.478	0.00	0.00	31.22	4.02
1572	1615	3.432186	CCCGTTTCTCTGCTATCCATGAA	60.432	47.826	0.00	0.00	0.00	2.57
1636	1702	7.885009	TCAGCAAATGAATCCAATTGATAGA	57.115	32.000	7.12	0.00	35.69	1.98
1650	1716	7.987458	TCCAATTGATAGAAGATGGAACTGTAC	59.013	37.037	7.12	0.00	34.21	2.90
1664	1730	3.560636	ACTGTACAGCACAAACTTCCT	57.439	42.857	22.90	0.00	36.48	3.36
1668	1734	2.902705	ACAGCACAAACTTCCTACGA	57.097	45.000	0.00	0.00	0.00	3.43
1680	1746	2.031258	TCCTACGAGAGCTGACAGAG	57.969	55.000	6.65	0.00	0.00	3.35
1824	1893	7.257722	TGAAACAGTTGTTCCTTCTTTGATTC	58.742	34.615	0.00	0.00	37.25	2.52
1920	1989	5.473162	TGATTCCAACGACTTTCACATGAAT	59.527	36.000	0.00	0.00	33.54	2.57
2362	2431	2.039084	ACTGCCGAAAAGATTCTGGACT	59.961	45.455	0.00	0.00	33.70	3.85
2512	2582	8.458052	TGTGTGATGTTGATTATTGTTATGACC	58.542	33.333	0.00	0.00	0.00	4.02
2542	2612	4.091509	CGTCTGTTATAACTGCAGGTTGAC	59.908	45.833	19.93	11.39	38.75	3.18
2760	2834	1.360551	CGAGCCAGGTGATACTCGG	59.639	63.158	5.71	0.00	46.20	4.63
2919	3001	9.817809	GACTACTGAAACATATCACCATAGAAA	57.182	33.333	0.00	0.00	0.00	2.52
3370	3454	5.447279	GCTAAATCTTATGTTGGTCACCACG	60.447	44.000	0.00	0.00	30.78	4.94
3381	3465	1.741145	GGTCACCACGAAACTGTTTGT	59.259	47.619	11.03	6.53	0.00	2.83
3404	3488	4.818005	TGTATTATGGCTGATTCTGTGCAG	59.182	41.667	0.00	0.00	35.28	4.41
3523	3609	6.173339	TGTTGACTCTCCATACTTTCCATTC	58.827	40.000	0.00	0.00	0.00	2.67
3526	3612	3.134804	ACTCTCCATACTTTCCATTCGGG	59.865	47.826	0.00	0.00	38.37	5.14
3606	3692	0.459237	CACAGTCTCCACTCATCGCC	60.459	60.000	0.00	0.00	0.00	5.54
3753	3839	3.629087	TCAGTAGTTAGTGGGTAGAGGC	58.371	50.000	0.00	0.00	0.00	4.70
3795	3881	5.460646	TGAATTTTGACGAATTGCTTCCTC	58.539	37.500	0.00	0.00	29.75	3.71
3856	3942	6.610830	TCACATTTTATTCCAGGGCATTACAT	59.389	34.615	0.00	0.00	0.00	2.29
3870	3956	5.185056	GGGCATTACATCTAACCACAGTTTT	59.815	40.000	0.00	0.00	37.42	2.43
3887	3973	5.163513	CAGTTTTTAGTAGCATTGGCCTTG	58.836	41.667	3.32	2.66	42.56	3.61
3903	3989	2.814336	GCCTTGGGAAGAGTGTACTTTG	59.186	50.000	0.00	0.00	0.00	2.77
3926	4012	4.325119	GGTTTCCTGTTAGGTCTTCCTTC	58.675	47.826	0.00	0.00	42.12	3.46
3931	4017	3.325135	CCTGTTAGGTCTTCCTTCTGTGT	59.675	47.826	0.00	0.00	42.12	3.72
3968	4054	7.437862	GGATGAACTGTTAGCTAGATCTCAAAG	59.562	40.741	0.00	0.00	0.00	2.77
4002	4088	7.381766	TCATGGACATAAGATCACTTGTTTG	57.618	36.000	0.00	0.00	37.53	2.93
4118	4204	6.757237	TGTACCACGGTTTGAATAGAAACTA	58.243	36.000	0.00	0.00	36.30	2.24
4298	4384	4.401022	TCCACAGTTCAGAGATTTGCAAT	58.599	39.130	0.00	0.00	0.00	3.56
4363	4449	3.119136	CCGTACTCGTCTGTTTTCTTTCG	59.881	47.826	0.00	0.00	35.01	3.46
4433	4519	0.870393	ACTGCGACTTTGCATCTGTG	59.130	50.000	0.00	0.00	45.26	3.66
4839	4949	6.020984	CGTGTGTTGTGTAATCATTGTATGG	58.979	40.000	0.00	0.00	0.00	2.74
4854	4964	1.818674	GTATGGCTTGAAGTGGGTTGG	59.181	52.381	0.00	0.00	0.00	3.77
5192	5390	1.504359	CCACGAAAGGTACGCTTCAA	58.496	50.000	0.00	0.00	0.00	2.69
5277	5475	9.931210	CTTGAAAAACGACTTATATTATGGGAC	57.069	33.333	0.00	0.00	0.00	4.46
5288	5486	2.376695	TTATGGGACGGAGGGAGTAG	57.623	55.000	0.00	0.00	0.00	2.57
5308	5506	7.352719	AGTAGCTTTCTTTGACGATAACTTG	57.647	36.000	0.00	0.00	0.00	3.16
5499	6630	5.253330	TGTTTTTCCACTGACCTGGATATC	58.747	41.667	0.00	0.00	40.18	1.63
5550	6681	3.829601	CCTTTCTCTACTGTCCACTCACT	59.170	47.826	0.00	0.00	0.00	3.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	2.174969	TCGAAAACAACACGCGCCT	61.175	52.632	5.73	0.00	0.00	5.52
93	94	1.957877	TGCCGTCGATGGTGTCATATA	59.042	47.619	24.33	0.00	32.98	0.86
94	95	0.750249	TGCCGTCGATGGTGTCATAT	59.250	50.000	24.33	0.00	32.98	1.78
169	170	1.351707	CGTGGTGTCACAACAGTGC	59.648	57.895	11.11	0.00	43.79	4.40
175	176	1.817520	CCAGCACGTGGTGTCACAA	60.818	57.895	37.10	0.00	43.79	3.33
318	319	1.442769	CTGCTTGTATTCACCGTGCT	58.557	50.000	0.00	0.00	0.00	4.40
393	394	6.037940	GAGCATCATATTTGAGCTTCTCAACA	59.962	38.462	8.60	1.58	41.89	3.33
487	488	8.738645	ATATAGTTCCTTGTTTGGATCAAGAC	57.261	34.615	7.16	0.00	43.17	3.01
623	625	1.225664	GCGCGTTAGAAGAAACCGC	60.226	57.895	8.43	0.00	39.76	5.68
634	636	1.366111	GCCATCAGGAAAGCGCGTTA	61.366	55.000	8.99	0.00	36.89	3.18
671	673	4.963276	TTTAAGTGCGGATTTCATGAGG	57.037	40.909	0.00	0.00	0.00	3.86
1193	1201	2.019807	ACTAAGTTCCACTTCCGGGA	57.980	50.000	0.00	0.00	39.51	5.14
1197	1205	4.083643	GGCGTAAAACTAAGTTCCACTTCC	60.084	45.833	0.00	0.00	39.51	3.46
1198	1206	4.512571	TGGCGTAAAACTAAGTTCCACTTC	59.487	41.667	0.00	0.00	39.51	3.01
1279	1310	3.917760	GCCTCCCCTCCGACGATG	61.918	72.222	0.00	0.00	0.00	3.84
1324	1355	6.457934	GCAGTAGTAACACAGTTATAGAGCGA	60.458	42.308	0.00	0.00	0.00	4.93
1383	1419	8.853126	GTCCCTGTTTAAGGTATAGTTTGTTTT	58.147	33.333	0.00	0.00	45.78	2.43
1467	1510	2.426522	TGGATCGTCAGCTGGAAAAAG	58.573	47.619	15.13	0.00	0.00	2.27
1542	1585	0.320771	CAGAGAAACGGGGACACCAG	60.321	60.000	0.00	0.00	40.22	4.00
1550	1593	2.103094	TCATGGATAGCAGAGAAACGGG	59.897	50.000	0.00	0.00	0.00	5.28
1572	1615	7.064253	GTCGCTACAGTTCACAGGTTTATAAAT	59.936	37.037	0.31	0.00	0.00	1.40
1636	1702	3.769739	TGTGCTGTACAGTTCCATCTT	57.230	42.857	23.44	0.00	33.42	2.40
1650	1716	2.989840	CTCTCGTAGGAAGTTTGTGCTG	59.010	50.000	0.00	0.00	0.00	4.41
2113	2182	1.908619	GAAAGTTTTCCCCATGGCCAT	59.091	47.619	14.09	14.09	0.00	4.40
2114	2183	1.347062	GAAAGTTTTCCCCATGGCCA	58.653	50.000	8.56	8.56	0.00	5.36
2118	2187	5.473066	AGTGATTGAAAGTTTTCCCCATG	57.527	39.130	2.41	0.00	36.36	3.66
2207	2276	9.565213	GAAATTTGAGAAGTAATCAATCCACAG	57.435	33.333	0.00	0.00	36.60	3.66
2379	2448	1.683917	TCAAAACAAATGTGGTCCCCG	59.316	47.619	0.00	0.00	0.00	5.73
2512	2582	4.634004	TGCAGTTATAACAGACGGGAAATG	59.366	41.667	17.65	4.41	0.00	2.32
2542	2612	4.982916	GCAAGTGAGTCTATACCATAACCG	59.017	45.833	0.00	0.00	0.00	4.44
2635	2709	0.629058	TGGGAGGGGAAAACCATAGC	59.371	55.000	0.00	0.00	42.91	2.97
2760	2834	7.527457	ACAAACTGAAGGAATTAAGTAATCGC	58.473	34.615	0.00	0.00	0.00	4.58
2807	2883	7.915293	ATTATGAACGAACAGTTGTCCATAA	57.085	32.000	8.75	8.75	44.35	1.90
3061	3143	1.281867	TCAAATTCCCTGACAGCCGAT	59.718	47.619	0.00	0.00	0.00	4.18
3370	3454	6.908825	TCAGCCATAATACACAAACAGTTTC	58.091	36.000	0.00	0.00	0.00	2.78
3381	3465	4.779696	TGCACAGAATCAGCCATAATACA	58.220	39.130	0.00	0.00	0.00	2.29
3404	3488	5.410924	GGCAACTCCATTTCTTATGGAAAC	58.589	41.667	7.80	0.00	46.50	2.78
3436	3520	7.337942	AGAATCAGGAAACTACTAAGCAAATGG	59.662	37.037	0.00	0.00	40.21	3.16
3523	3609	2.672996	CACTTTCCCTGGTGCCCG	60.673	66.667	0.00	0.00	0.00	6.13
3526	3612	2.099756	GCATATTCACTTTCCCTGGTGC	59.900	50.000	0.00	0.00	33.91	5.01
3753	3839	3.275143	TCAACAAATACGTAGCCATGGG	58.725	45.455	15.13	0.00	0.00	4.00
3795	3881	9.817809	TCAATACAAGTAGCTAAGGTATGAAAG	57.182	33.333	11.70	5.73	0.00	2.62
3856	3942	7.174253	CCAATGCTACTAAAAACTGTGGTTAGA	59.826	37.037	14.34	2.44	34.90	2.10
3870	3956	1.919654	TCCCAAGGCCAATGCTACTAA	59.080	47.619	5.01	0.00	37.74	2.24
3887	3973	3.503800	AACCCAAAGTACACTCTTCCC	57.496	47.619	0.00	0.00	0.00	3.97
3903	3989	2.643304	AGGAAGACCTAACAGGAAACCC	59.357	50.000	0.00	0.00	45.83	4.11
3968	4054	9.060347	TGATCTTATGTCCATGAAAAGCTATTC	57.940	33.333	0.00	0.00	0.00	1.75
4031	4117	8.703604	TTCTAAGAGGTCGAACATAAAAGATG	57.296	34.615	1.87	0.00	0.00	2.90
4036	4122	8.008513	AGCTATTCTAAGAGGTCGAACATAAA	57.991	34.615	1.87	0.00	0.00	1.40
4043	4129	7.380431	GCTAATAGCTATTCTAAGAGGTCGA	57.620	40.000	22.09	0.00	38.45	4.20
4298	4384	6.040278	TGACAAATTGTGCAAACCTCTTCATA	59.960	34.615	2.20	0.00	0.00	2.15
4433	4519	2.427095	GGCACAGGGGAACATAAACATC	59.573	50.000	0.00	0.00	0.00	3.06
4839	4949	1.754226	TGTTTCCAACCCACTTCAAGC	59.246	47.619	0.00	0.00	0.00	4.01
4877	4989	9.624373	AGAGAGTAACATCGTTAGGAAATAGTA	57.376	33.333	0.00	0.00	0.00	1.82
4878	4990	8.522542	AGAGAGTAACATCGTTAGGAAATAGT	57.477	34.615	0.00	0.00	0.00	2.12
4879	4991	8.622157	TGAGAGAGTAACATCGTTAGGAAATAG	58.378	37.037	0.00	0.00	0.00	1.73
5250	5448	8.617809	TCCCATAATATAAGTCGTTTTTCAAGC	58.382	33.333	0.00	0.00	0.00	4.01
5277	5475	2.233922	TCAAAGAAAGCTACTCCCTCCG	59.766	50.000	0.00	0.00	0.00	4.63
5288	5486	4.454504	TCCCAAGTTATCGTCAAAGAAAGC	59.545	41.667	0.00	0.00	0.00	3.51
5308	5506	3.936564	GAGCAGATCCACATTCTATCCC	58.063	50.000	0.00	0.00	0.00	3.85
5499	6630	1.171308	CCCAAGGTGCAACATGAGAG	58.829	55.000	8.90	0.00	39.98	3.20
5550	6681	1.405105	GTTGTGAGGCAAACAAGCTGA	59.595	47.619	5.38	0.00	38.17	4.26
5632	6763	5.412904	GCCATTATAGTTGCCTGAATAGTCC	59.587	44.000	0.00	0.00	0.00	3.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.