Multiple sequence alignment - TraesCS1D01G144100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G144100 chr1D 100.000 6246 0 0 1 6246 199599749 199605994 0.000000e+00 11535.0
1 TraesCS1D01G144100 chr1D 97.124 591 16 1 5595 6185 80690667 80690078 0.000000e+00 996.0
2 TraesCS1D01G144100 chr1D 96.785 591 18 1 5595 6185 106291190 106290601 0.000000e+00 985.0
3 TraesCS1D01G144100 chr1D 91.231 593 48 4 5596 6185 11401624 11402215 0.000000e+00 804.0
4 TraesCS1D01G144100 chr1D 94.253 261 14 1 5248 5508 425298117 425297858 1.260000e-106 398.0
5 TraesCS1D01G144100 chr1D 92.105 266 20 1 5243 5508 290449718 290449454 2.130000e-99 374.0
6 TraesCS1D01G144100 chr1D 86.957 138 12 6 2574 2707 195194326 195194191 3.900000e-32 150.0
7 TraesCS1D01G144100 chr1D 96.825 63 2 0 6184 6246 9298416 9298354 8.560000e-19 106.0
8 TraesCS1D01G144100 chr1D 96.825 63 2 0 6184 6246 106290377 106290315 8.560000e-19 106.0
9 TraesCS1D01G144100 chr1D 82.857 105 14 3 1449 1550 25949511 25949614 2.400000e-14 91.6
10 TraesCS1D01G144100 chr1D 94.545 55 1 2 2688 2742 423268599 423268651 4.010000e-12 84.2
11 TraesCS1D01G144100 chr1D 89.552 67 4 3 2678 2742 233792189 233792124 1.440000e-11 82.4
12 TraesCS1D01G144100 chr1B 91.635 1865 105 21 3419 5245 280169360 280171211 0.000000e+00 2532.0
13 TraesCS1D01G144100 chr1B 89.378 1205 83 26 3 1185 280166792 280167973 0.000000e+00 1474.0
14 TraesCS1D01G144100 chr1B 87.373 689 46 15 2707 3358 280168643 280169327 0.000000e+00 752.0
15 TraesCS1D01G144100 chr1B 77.207 487 58 20 1449 1893 655853275 655852800 1.050000e-57 235.0
16 TraesCS1D01G144100 chr1B 97.872 94 2 0 5503 5596 280171211 280171304 5.010000e-36 163.0
17 TraesCS1D01G144100 chr1B 86.957 138 12 6 2574 2707 270314597 270314732 3.900000e-32 150.0
18 TraesCS1D01G144100 chr1B 76.159 151 26 8 2565 2709 138584219 138584365 3.120000e-08 71.3
19 TraesCS1D01G144100 chr1A 90.432 1944 122 20 2622 4508 251343812 251345748 0.000000e+00 2501.0
20 TraesCS1D01G144100 chr1A 87.738 1313 83 32 2 1271 251340977 251342254 0.000000e+00 1461.0
21 TraesCS1D01G144100 chr1A 92.857 728 29 8 4540 5245 251345880 251346606 0.000000e+00 1035.0
22 TraesCS1D01G144100 chr1A 82.927 984 95 35 1449 2364 258006627 258005649 0.000000e+00 819.0
23 TraesCS1D01G144100 chr1A 97.872 94 2 0 5503 5596 251346606 251346699 5.010000e-36 163.0
24 TraesCS1D01G144100 chr1A 94.545 55 1 2 2688 2742 519270357 519270409 4.010000e-12 84.2
25 TraesCS1D01G144100 chr7D 97.128 592 16 1 5594 6185 106013565 106014155 0.000000e+00 998.0
26 TraesCS1D01G144100 chr7D 97.109 588 16 1 5598 6185 583519588 583520174 0.000000e+00 990.0
27 TraesCS1D01G144100 chr7D 83.904 789 82 22 1449 2205 151407995 151407220 0.000000e+00 712.0
28 TraesCS1D01G144100 chr7D 80.757 951 94 38 1474 2364 125841246 125840325 0.000000e+00 660.0
29 TraesCS1D01G144100 chr7D 79.197 548 78 24 1488 2013 535737831 535737298 1.290000e-91 348.0
30 TraesCS1D01G144100 chr7D 96.825 63 2 0 6184 6246 106014379 106014441 8.560000e-19 106.0
31 TraesCS1D01G144100 chr7D 96.825 63 2 0 6184 6246 583520398 583520460 8.560000e-19 106.0
32 TraesCS1D01G144100 chr3D 96.141 596 22 1 5590 6185 236729007 236728413 0.000000e+00 972.0
33 TraesCS1D01G144100 chr3D 82.546 974 97 28 1450 2364 514007266 514006307 0.000000e+00 789.0
34 TraesCS1D01G144100 chr3D 81.006 974 97 36 1449 2361 42498357 42499303 0.000000e+00 693.0
35 TraesCS1D01G144100 chr3D 79.648 398 45 18 1449 1814 554131832 554132225 2.890000e-63 254.0
36 TraesCS1D01G144100 chr3D 81.405 242 34 8 2537 2774 326959783 326960017 2.970000e-43 187.0
37 TraesCS1D01G144100 chr3D 98.413 63 1 0 6184 6246 236728189 236728127 1.840000e-20 111.0
38 TraesCS1D01G144100 chr3D 95.161 62 3 0 2357 2418 199541238 199541299 1.430000e-16 99.0
39 TraesCS1D01G144100 chr3D 96.552 58 1 1 2360 2417 373846487 373846431 1.850000e-15 95.3
40 TraesCS1D01G144100 chr2D 96.284 592 17 2 5594 6185 647793310 647793896 0.000000e+00 966.0
41 TraesCS1D01G144100 chr2D 95.101 592 26 3 5595 6185 578684318 578684907 0.000000e+00 929.0
42 TraesCS1D01G144100 chr2D 82.419 984 92 35 1449 2361 26926956 26927929 0.000000e+00 784.0
43 TraesCS1D01G144100 chr2D 87.646 599 53 12 1774 2364 14347270 14346685 0.000000e+00 676.0
44 TraesCS1D01G144100 chr2D 85.305 558 65 13 4207 4749 326681202 326680647 1.520000e-155 560.0
45 TraesCS1D01G144100 chr2D 80.718 529 48 23 1448 1924 62284202 62283676 4.600000e-96 363.0
46 TraesCS1D01G144100 chr2D 77.888 502 44 23 1449 1888 640824121 640824617 3.740000e-62 250.0
47 TraesCS1D01G144100 chr2D 98.361 61 1 0 6186 6246 578685133 578685193 2.380000e-19 108.0
48 TraesCS1D01G144100 chr2D 96.825 63 2 0 6184 6246 647794117 647794179 8.560000e-19 106.0
49 TraesCS1D01G144100 chr2D 96.667 60 2 0 2360 2419 645009202 645009261 3.980000e-17 100.0
50 TraesCS1D01G144100 chr2D 76.923 195 30 13 2546 2734 36749519 36749334 5.150000e-16 97.1
51 TraesCS1D01G144100 chr4D 87.682 755 56 22 1637 2364 134665257 134664513 0.000000e+00 845.0
52 TraesCS1D01G144100 chr4D 92.537 268 17 1 5241 5505 17846536 17846803 1.270000e-101 381.0
53 TraesCS1D01G144100 chr4D 80.907 529 47 18 1562 2060 472498792 472499296 9.890000e-98 368.0
54 TraesCS1D01G144100 chr4D 75.815 736 140 28 3994 4718 474014201 474013493 7.760000e-89 339.0
55 TraesCS1D01G144100 chr4D 87.879 264 29 3 5243 5505 468358579 468358840 2.190000e-79 307.0
56 TraesCS1D01G144100 chr4D 76.638 458 46 20 1457 1854 484923505 484923049 4.940000e-46 196.0
57 TraesCS1D01G144100 chr4D 96.552 58 2 0 2360 2417 472217912 472217855 5.150000e-16 97.1
58 TraesCS1D01G144100 chr4D 83.908 87 11 3 2622 2707 389003526 389003610 5.190000e-11 80.5
59 TraesCS1D01G144100 chrUn 91.554 592 47 3 5596 6185 9742758 9742168 0.000000e+00 813.0
60 TraesCS1D01G144100 chrUn 78.882 161 24 6 2564 2723 262555226 262555075 3.980000e-17 100.0
61 TraesCS1D01G144100 chrUn 92.982 57 4 0 2360 2416 21370159 21370103 4.010000e-12 84.2
62 TraesCS1D01G144100 chr4A 86.275 765 62 23 1634 2361 12455800 12456558 0.000000e+00 791.0
63 TraesCS1D01G144100 chr4A 85.789 760 70 21 1634 2361 12458398 12459151 0.000000e+00 771.0
64 TraesCS1D01G144100 chr4A 80.911 922 83 38 1564 2419 17091729 17090835 5.280000e-180 641.0
65 TraesCS1D01G144100 chr4A 79.457 516 83 14 3994 4506 680587444 680586949 1.670000e-90 344.0
66 TraesCS1D01G144100 chr4A 86.842 114 10 4 1449 1560 514925738 514925848 8.500000e-24 122.0
67 TraesCS1D01G144100 chr4A 78.022 182 31 9 2565 2742 193101500 193101324 8.560000e-19 106.0
68 TraesCS1D01G144100 chr4A 100.000 56 0 0 2361 2416 656755294 656755239 3.080000e-18 104.0
69 TraesCS1D01G144100 chr4A 92.857 70 5 0 2357 2426 45902524 45902593 1.110000e-17 102.0
70 TraesCS1D01G144100 chr6D 85.392 753 59 25 1652 2361 388969777 388970521 0.000000e+00 734.0
71 TraesCS1D01G144100 chr6D 80.879 387 48 11 1449 1814 379977432 379977813 1.330000e-71 281.0
72 TraesCS1D01G144100 chr6D 100.000 57 0 0 2360 2416 154344561 154344617 8.560000e-19 106.0
73 TraesCS1D01G144100 chr6D 96.667 60 2 0 2357 2416 49505152 49505211 3.980000e-17 100.0
74 TraesCS1D01G144100 chr6D 95.082 61 3 0 2357 2417 333807252 333807312 5.150000e-16 97.1
75 TraesCS1D01G144100 chr6D 94.915 59 3 0 2362 2420 388159895 388159837 6.670000e-15 93.5
76 TraesCS1D01G144100 chr6D 94.000 50 3 0 2683 2732 340842963 340843012 6.710000e-10 76.8
77 TraesCS1D01G144100 chr6D 92.308 52 3 1 2681 2732 340856374 340856424 8.690000e-09 73.1
78 TraesCS1D01G144100 chr6D 78.761 113 18 5 2620 2732 340856064 340856170 3.120000e-08 71.3
79 TraesCS1D01G144100 chr6D 95.238 42 2 0 2682 2723 340843216 340843257 4.040000e-07 67.6
80 TraesCS1D01G144100 chr5B 81.192 973 105 40 1449 2364 491227832 491226881 0.000000e+00 712.0
81 TraesCS1D01G144100 chr5B 79.124 982 111 43 1448 2348 107189257 107190225 5.390000e-165 592.0
82 TraesCS1D01G144100 chr7A 87.192 609 52 15 1774 2360 729058822 729059426 0.000000e+00 669.0
83 TraesCS1D01G144100 chr7A 87.092 612 54 16 1774 2364 729060054 729060661 0.000000e+00 669.0
84 TraesCS1D01G144100 chr5D 80.203 985 93 40 1449 2364 558062778 558061827 0.000000e+00 645.0
85 TraesCS1D01G144100 chr5D 84.615 455 48 12 4286 4721 483517746 483518197 3.460000e-117 433.0
86 TraesCS1D01G144100 chr5D 95.019 261 13 0 5248 5508 554873750 554873490 1.620000e-110 411.0
87 TraesCS1D01G144100 chr5D 89.272 261 27 1 5245 5505 468044307 468044566 6.040000e-85 326.0
88 TraesCS1D01G144100 chr3A 81.023 743 94 30 1449 2152 661603239 661603973 1.180000e-151 547.0
89 TraesCS1D01G144100 chr3A 80.672 595 77 28 1449 2018 170991069 170991650 1.610000e-115 427.0
90 TraesCS1D01G144100 chr3A 81.923 520 52 19 1637 2152 31733834 31734315 9.750000e-108 401.0
91 TraesCS1D01G144100 chr6A 77.168 1003 90 51 1449 2352 597282832 597283794 7.380000e-124 455.0
92 TraesCS1D01G144100 chr6A 88.710 62 6 1 2680 2741 553009919 553009859 2.410000e-09 75.0
93 TraesCS1D01G144100 chr7B 81.341 552 69 15 4115 4648 453752192 453751657 9.680000e-113 418.0
94 TraesCS1D01G144100 chr6B 80.978 552 71 15 4115 4648 560807103 560806568 2.100000e-109 407.0
95 TraesCS1D01G144100 chr6B 80.116 518 68 16 4115 4614 712151397 712151897 2.770000e-93 353.0
96 TraesCS1D01G144100 chr6B 87.547 265 31 2 5246 5508 257331591 257331327 7.870000e-79 305.0
97 TraesCS1D01G144100 chr4B 78.876 516 86 15 3994 4506 597033965 597033470 1.680000e-85 327.0
98 TraesCS1D01G144100 chr4B 87.984 258 29 1 5248 5505 609194219 609194474 2.830000e-78 303.0
99 TraesCS1D01G144100 chr4B 90.741 54 4 1 2689 2742 41755970 41756022 3.120000e-08 71.3
100 TraesCS1D01G144100 chr3B 89.453 256 25 1 5243 5496 13413560 13413305 7.810000e-84 322.0
101 TraesCS1D01G144100 chr3B 82.449 245 33 7 2537 2777 422467589 422467351 8.210000e-49 206.0
102 TraesCS1D01G144100 chr2B 81.844 347 41 16 1563 1898 4476278 4476613 7.980000e-69 272.0
103 TraesCS1D01G144100 chr2B 82.022 178 27 4 2603 2777 546177939 546177764 5.050000e-31 147.0
104 TraesCS1D01G144100 chr2B 78.866 194 29 10 2546 2734 63092751 63092565 3.060000e-23 121.0
105 TraesCS1D01G144100 chr2B 95.312 64 2 1 2357 2420 51879822 51879884 3.980000e-17 100.0
106 TraesCS1D01G144100 chr2B 95.161 62 2 1 2357 2418 709247797 709247737 5.150000e-16 97.1
107 TraesCS1D01G144100 chr2A 75.385 195 35 11 2546 2734 41101784 41101597 1.440000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G144100 chr1D 199599749 199605994 6245 False 11535.00 11535 100.00000 1 6246 1 chr1D.!!$F3 6245
1 TraesCS1D01G144100 chr1D 80690078 80690667 589 True 996.00 996 97.12400 5595 6185 1 chr1D.!!$R2 590
2 TraesCS1D01G144100 chr1D 11401624 11402215 591 False 804.00 804 91.23100 5596 6185 1 chr1D.!!$F1 589
3 TraesCS1D01G144100 chr1D 106290315 106291190 875 True 545.50 985 96.80500 5595 6246 2 chr1D.!!$R7 651
4 TraesCS1D01G144100 chr1B 280166792 280171304 4512 False 1230.25 2532 91.56450 3 5596 4 chr1B.!!$F3 5593
5 TraesCS1D01G144100 chr1A 251340977 251346699 5722 False 1290.00 2501 92.22475 2 5596 4 chr1A.!!$F2 5594
6 TraesCS1D01G144100 chr1A 258005649 258006627 978 True 819.00 819 82.92700 1449 2364 1 chr1A.!!$R1 915
7 TraesCS1D01G144100 chr7D 151407220 151407995 775 True 712.00 712 83.90400 1449 2205 1 chr7D.!!$R2 756
8 TraesCS1D01G144100 chr7D 125840325 125841246 921 True 660.00 660 80.75700 1474 2364 1 chr7D.!!$R1 890
9 TraesCS1D01G144100 chr7D 106013565 106014441 876 False 552.00 998 96.97650 5594 6246 2 chr7D.!!$F1 652
10 TraesCS1D01G144100 chr7D 583519588 583520460 872 False 548.00 990 96.96700 5598 6246 2 chr7D.!!$F2 648
11 TraesCS1D01G144100 chr7D 535737298 535737831 533 True 348.00 348 79.19700 1488 2013 1 chr7D.!!$R3 525
12 TraesCS1D01G144100 chr3D 514006307 514007266 959 True 789.00 789 82.54600 1450 2364 1 chr3D.!!$R2 914
13 TraesCS1D01G144100 chr3D 42498357 42499303 946 False 693.00 693 81.00600 1449 2361 1 chr3D.!!$F1 912
14 TraesCS1D01G144100 chr3D 236728127 236729007 880 True 541.50 972 97.27700 5590 6246 2 chr3D.!!$R3 656
15 TraesCS1D01G144100 chr2D 26926956 26927929 973 False 784.00 784 82.41900 1449 2361 1 chr2D.!!$F1 912
16 TraesCS1D01G144100 chr2D 14346685 14347270 585 True 676.00 676 87.64600 1774 2364 1 chr2D.!!$R1 590
17 TraesCS1D01G144100 chr2D 326680647 326681202 555 True 560.00 560 85.30500 4207 4749 1 chr2D.!!$R4 542
18 TraesCS1D01G144100 chr2D 647793310 647794179 869 False 536.00 966 96.55450 5594 6246 2 chr2D.!!$F5 652
19 TraesCS1D01G144100 chr2D 578684318 578685193 875 False 518.50 929 96.73100 5595 6246 2 chr2D.!!$F4 651
20 TraesCS1D01G144100 chr2D 62283676 62284202 526 True 363.00 363 80.71800 1448 1924 1 chr2D.!!$R3 476
21 TraesCS1D01G144100 chr4D 134664513 134665257 744 True 845.00 845 87.68200 1637 2364 1 chr4D.!!$R1 727
22 TraesCS1D01G144100 chr4D 472498792 472499296 504 False 368.00 368 80.90700 1562 2060 1 chr4D.!!$F4 498
23 TraesCS1D01G144100 chr4D 474013493 474014201 708 True 339.00 339 75.81500 3994 4718 1 chr4D.!!$R3 724
24 TraesCS1D01G144100 chrUn 9742168 9742758 590 True 813.00 813 91.55400 5596 6185 1 chrUn.!!$R1 589
25 TraesCS1D01G144100 chr4A 12455800 12459151 3351 False 781.00 791 86.03200 1634 2361 2 chr4A.!!$F3 727
26 TraesCS1D01G144100 chr4A 17090835 17091729 894 True 641.00 641 80.91100 1564 2419 1 chr4A.!!$R1 855
27 TraesCS1D01G144100 chr6D 388969777 388970521 744 False 734.00 734 85.39200 1652 2361 1 chr6D.!!$F5 709
28 TraesCS1D01G144100 chr5B 491226881 491227832 951 True 712.00 712 81.19200 1449 2364 1 chr5B.!!$R1 915
29 TraesCS1D01G144100 chr5B 107189257 107190225 968 False 592.00 592 79.12400 1448 2348 1 chr5B.!!$F1 900
30 TraesCS1D01G144100 chr7A 729058822 729060661 1839 False 669.00 669 87.14200 1774 2364 2 chr7A.!!$F1 590
31 TraesCS1D01G144100 chr5D 558061827 558062778 951 True 645.00 645 80.20300 1449 2364 1 chr5D.!!$R2 915
32 TraesCS1D01G144100 chr3A 661603239 661603973 734 False 547.00 547 81.02300 1449 2152 1 chr3A.!!$F3 703
33 TraesCS1D01G144100 chr3A 170991069 170991650 581 False 427.00 427 80.67200 1449 2018 1 chr3A.!!$F2 569
34 TraesCS1D01G144100 chr6A 597282832 597283794 962 False 455.00 455 77.16800 1449 2352 1 chr6A.!!$F1 903
35 TraesCS1D01G144100 chr7B 453751657 453752192 535 True 418.00 418 81.34100 4115 4648 1 chr7B.!!$R1 533
36 TraesCS1D01G144100 chr6B 560806568 560807103 535 True 407.00 407 80.97800 4115 4648 1 chr6B.!!$R2 533
37 TraesCS1D01G144100 chr6B 712151397 712151897 500 False 353.00 353 80.11600 4115 4614 1 chr6B.!!$F1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 459 0.104120 CAACGGAGGCCATCATCGTA 59.896 55.000 5.01 0.0 33.52 3.43 F
1041 1062 0.035056 AGAGGGCGCTTATGCTGTTT 60.035 50.000 7.64 0.0 36.97 2.83 F
1464 1654 0.036952 CCAGAGCGCTTCTTCAGGAA 60.037 55.000 13.26 0.0 32.41 3.36 F
1893 5200 1.070786 TTTTGCTTCCGCGAGAGGT 59.929 52.632 8.23 0.0 39.65 3.85 F
2434 6376 1.141053 CGGCTAACCAGGCTCCTATTT 59.859 52.381 0.00 0.0 45.04 1.40 F
3190 8321 1.766494 TGGTCATGTTGGATGGATGC 58.234 50.000 0.00 0.0 0.00 3.91 F
4079 9242 0.532862 CAGGGTCACGAGTTGCTGTT 60.533 55.000 0.00 0.0 0.00 3.16 F
5249 10578 0.034089 ACAGCAGGAACATTAGCCCC 60.034 55.000 0.00 0.0 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1445 1635 0.036952 TTCCTGAAGAAGCGCTCTGG 60.037 55.000 12.06 12.26 33.37 3.86 R
2253 6178 0.682852 TTCACCGTTGGATTCCTCGT 59.317 50.000 15.51 1.12 0.00 4.18 R
3047 8178 1.372499 GCGCACGTACTCAACCTCA 60.372 57.895 0.30 0.00 0.00 3.86 R
3782 8944 0.762418 TCACGGAATGGGTGACAAGT 59.238 50.000 0.00 0.00 39.36 3.16 R
4061 9224 0.532862 CAACAGCAACTCGTGACCCT 60.533 55.000 0.00 0.00 0.00 4.34 R
4944 10256 1.377725 CTCATCAAGGGCGCCTGTT 60.378 57.895 28.56 17.60 32.13 3.16 R
5369 10698 0.101759 TCTTACATAGGTCCGCGTGC 59.898 55.000 4.92 0.00 0.00 5.34 R
6211 11771 0.111832 ACCGAGGACACAGTCACCTA 59.888 55.000 0.00 0.00 33.68 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 0.320334 CACCAGTGTACACCATCGCA 60.320 55.000 22.28 0.00 0.00 5.10
54 55 1.675714 CCAGTGTACACCATCGCATGT 60.676 52.381 22.28 0.00 0.00 3.21
152 153 5.757320 CAGCTAAAGGTATGATGTCCTTGAG 59.243 44.000 9.72 9.72 42.38 3.02
207 208 2.205074 GAGTCATGTTACTGATGCCGG 58.795 52.381 0.00 0.00 0.00 6.13
220 221 4.141620 ACTGATGCCGGAATTATCTCTGTT 60.142 41.667 5.05 0.00 0.00 3.16
251 252 2.978156 ATGTGGACATGGTGAAGGTT 57.022 45.000 0.00 0.00 34.83 3.50
319 320 3.383825 GCTGCTAGGTACTTACTGGCTAA 59.616 47.826 7.32 0.00 42.20 3.09
326 327 5.557866 AGGTACTTACTGGCTAAAACCTTG 58.442 41.667 0.00 0.00 31.10 3.61
433 444 1.068541 TCGTCTCTGATGACCACAACG 60.069 52.381 0.00 0.00 33.70 4.10
448 459 0.104120 CAACGGAGGCCATCATCGTA 59.896 55.000 5.01 0.00 33.52 3.43
487 498 2.036256 GAGGCACCTGCAATGGGT 59.964 61.111 0.00 0.00 44.36 4.51
505 516 1.000233 TGGCATGGGTGGAATGGAC 60.000 57.895 0.00 0.00 0.00 4.02
520 531 5.132648 TGGAATGGACTACTAAGCCATGAAT 59.867 40.000 0.00 0.00 38.69 2.57
528 539 0.934496 TAAGCCATGAATACGCACGC 59.066 50.000 0.00 0.00 0.00 5.34
532 543 1.136252 GCCATGAATACGCACGCTATG 60.136 52.381 0.00 0.00 0.00 2.23
555 566 5.163513 GTGAAGCAAACTGGAACATATTGG 58.836 41.667 0.00 0.00 38.20 3.16
565 576 5.195756 ACTGGAACATATTGGTTAGGGGATT 59.804 40.000 0.00 0.00 38.20 3.01
681 692 8.350238 GTTGGGACGAATAATAAAGAGTAGTC 57.650 38.462 0.00 0.00 0.00 2.59
682 693 6.732154 TGGGACGAATAATAAAGAGTAGTCG 58.268 40.000 0.00 1.42 45.94 4.18
703 714 3.987807 CGAGAGCTGAAACACTTGATC 57.012 47.619 0.00 0.00 0.00 2.92
704 715 2.343843 CGAGAGCTGAAACACTTGATCG 59.656 50.000 0.00 0.00 0.00 3.69
706 717 2.300152 AGAGCTGAAACACTTGATCGGA 59.700 45.455 0.00 0.00 0.00 4.55
716 727 7.227711 TGAAACACTTGATCGGAAACTGATTAA 59.772 33.333 0.00 0.00 0.00 1.40
721 732 5.966636 TGATCGGAAACTGATTAATGACG 57.033 39.130 0.00 0.00 0.00 4.35
763 774 1.295792 AGAGTTGCGCGTTTTGAAGA 58.704 45.000 8.43 0.00 0.00 2.87
801 812 5.920840 TCACTTGTTTGTTCTCTCGTCTATG 59.079 40.000 0.00 0.00 0.00 2.23
802 813 5.692204 CACTTGTTTGTTCTCTCGTCTATGT 59.308 40.000 0.00 0.00 0.00 2.29
812 823 6.141560 TCTCTCGTCTATGTTACGACTCTA 57.858 41.667 0.00 0.00 43.90 2.43
849 860 8.747666 GTTCTGCACGTTTCATTGTAAAATAAA 58.252 29.630 0.00 0.00 0.00 1.40
899 912 2.729882 CGAGTCGGTTTAGGTTTGAGTG 59.270 50.000 4.10 0.00 0.00 3.51
939 952 1.792006 GTGTCCGGAATCGTTTGACT 58.208 50.000 5.23 0.00 33.95 3.41
949 962 2.234300 TCGTTTGACTGTGGGAGAAC 57.766 50.000 0.00 0.00 0.00 3.01
956 969 2.637382 TGACTGTGGGAGAACATAAGCA 59.363 45.455 0.00 0.00 0.00 3.91
973 986 1.972660 GCACGGGATAGTTGGCTCCT 61.973 60.000 0.00 0.00 0.00 3.69
974 987 0.179073 CACGGGATAGTTGGCTCCTG 60.179 60.000 0.00 0.00 42.61 3.86
975 988 1.338136 ACGGGATAGTTGGCTCCTGG 61.338 60.000 3.87 0.00 41.46 4.45
991 1007 3.454082 CTCCTGGCCTTAAGAGTTGAGAT 59.546 47.826 3.32 0.00 0.00 2.75
992 1010 3.846588 TCCTGGCCTTAAGAGTTGAGATT 59.153 43.478 3.32 0.00 0.00 2.40
993 1011 3.944015 CCTGGCCTTAAGAGTTGAGATTG 59.056 47.826 3.32 0.00 0.00 2.67
994 1012 4.323792 CCTGGCCTTAAGAGTTGAGATTGA 60.324 45.833 3.32 0.00 0.00 2.57
1041 1062 0.035056 AGAGGGCGCTTATGCTGTTT 60.035 50.000 7.64 0.00 36.97 2.83
1052 1073 2.479566 ATGCTGTTTGACACGAGGAT 57.520 45.000 0.00 0.00 0.00 3.24
1053 1074 1.511850 TGCTGTTTGACACGAGGATG 58.488 50.000 0.00 0.00 0.00 3.51
1080 1101 2.125106 GAGATGTTCCGGCCGCTT 60.125 61.111 22.85 4.21 0.00 4.68
1081 1102 1.143183 GAGATGTTCCGGCCGCTTA 59.857 57.895 22.85 3.89 0.00 3.09
1083 1104 0.180406 AGATGTTCCGGCCGCTTATT 59.820 50.000 22.85 3.29 0.00 1.40
1186 1216 1.228956 TACAGGTACGTGTGCCCCT 60.229 57.895 27.04 5.53 35.84 4.79
1187 1217 0.039472 TACAGGTACGTGTGCCCCTA 59.961 55.000 27.04 6.94 35.84 3.53
1189 1219 1.228956 AGGTACGTGTGCCCCTACA 60.229 57.895 0.00 0.00 35.84 2.74
1190 1220 0.616679 AGGTACGTGTGCCCCTACAT 60.617 55.000 0.00 0.00 35.84 2.29
1191 1221 0.251073 GGTACGTGTGCCCCTACATT 59.749 55.000 0.00 0.00 32.43 2.71
1193 1223 2.429478 GTACGTGTGCCCCTACATTTT 58.571 47.619 0.00 0.00 32.43 1.82
1194 1224 2.863132 ACGTGTGCCCCTACATTTTA 57.137 45.000 0.00 0.00 32.43 1.52
1195 1225 3.143211 ACGTGTGCCCCTACATTTTAA 57.857 42.857 0.00 0.00 32.43 1.52
1197 1227 3.078837 CGTGTGCCCCTACATTTTAACT 58.921 45.455 0.00 0.00 32.43 2.24
1198 1228 3.119990 CGTGTGCCCCTACATTTTAACTG 60.120 47.826 0.00 0.00 32.43 3.16
1204 1252 4.816392 CCCCTACATTTTAACTGTTTGGC 58.184 43.478 0.00 0.00 0.00 4.52
1222 1276 1.519455 CTGGAGACCCGTCGATTGC 60.519 63.158 0.00 0.00 34.29 3.56
1236 1290 1.135431 CGATTGCCTGAAATTTCGCCA 60.135 47.619 13.34 7.31 0.00 5.69
1239 1293 1.167851 TGCCTGAAATTTCGCCAGAG 58.832 50.000 13.34 4.80 0.00 3.35
1240 1294 0.453390 GCCTGAAATTTCGCCAGAGG 59.547 55.000 13.34 13.91 0.00 3.69
1272 1326 3.316868 TCAAAACCCGCTTTCCTAAACAG 59.683 43.478 0.00 0.00 0.00 3.16
1284 1364 3.918253 TAAACAGCAGGGCGGGCAG 62.918 63.158 3.27 0.00 0.00 4.85
1306 1400 2.161609 CACTATGTGGCCGTTTTCCTTC 59.838 50.000 0.00 0.00 0.00 3.46
1332 1426 6.723298 TTTTCTCCATTTGTTGCTTTCCTA 57.277 33.333 0.00 0.00 0.00 2.94
1338 1528 8.865090 TCTCCATTTGTTGCTTTCCTATTTTTA 58.135 29.630 0.00 0.00 0.00 1.52
1374 1564 0.387565 TTCAGGTTTTTCAAGCGGGC 59.612 50.000 0.00 0.00 35.40 6.13
1460 1650 1.673033 GCTAACCAGAGCGCTTCTTCA 60.673 52.381 13.26 0.00 32.41 3.02
1464 1654 0.036952 CCAGAGCGCTTCTTCAGGAA 60.037 55.000 13.26 0.00 32.41 3.36
1483 1673 2.101185 CTCGCGACGATCAGCACT 59.899 61.111 3.71 0.00 34.61 4.40
1544 1734 2.896685 TGGACGCTCCATTTGGATTTTT 59.103 40.909 0.00 0.00 42.67 1.94
1562 1767 3.246064 TTTTTCCGCACGCGTAGG 58.754 55.556 22.42 22.42 37.81 3.18
1564 1769 1.159098 TTTTTCCGCACGCGTAGGTT 61.159 50.000 25.67 0.00 37.81 3.50
1565 1770 1.159098 TTTTCCGCACGCGTAGGTTT 61.159 50.000 25.67 0.00 37.81 3.27
1893 5200 1.070786 TTTTGCTTCCGCGAGAGGT 59.929 52.632 8.23 0.00 39.65 3.85
2007 5737 3.649277 CTTCCACGAGAGGCACGGG 62.649 68.421 0.00 0.00 34.93 5.28
2155 6046 4.699522 ACGGGCGTGCCTCTTTCC 62.700 66.667 11.25 0.00 36.10 3.13
2253 6178 6.405953 GGGATCTAGTTTTGAAGATCTCGACA 60.406 42.308 11.05 0.00 37.77 4.35
2391 6331 3.554934 AGTTGGAGTGATCTTTGCAACA 58.445 40.909 24.57 0.00 44.81 3.33
2393 6333 4.037208 AGTTGGAGTGATCTTTGCAACAAG 59.963 41.667 24.57 0.00 44.81 3.16
2404 6344 4.574828 TCTTTGCAACAAGTACTCCTCAAC 59.425 41.667 0.00 0.00 0.00 3.18
2434 6376 1.141053 CGGCTAACCAGGCTCCTATTT 59.859 52.381 0.00 0.00 45.04 1.40
2457 6399 6.428385 TTTGTGTTGCATTTTTAACCCAAG 57.572 33.333 0.00 0.00 28.70 3.61
2466 6408 9.566432 TTGCATTTTTAACCCAAGAATAACAAT 57.434 25.926 0.00 0.00 0.00 2.71
2468 6410 7.962373 GCATTTTTAACCCAAGAATAACAATGC 59.038 33.333 10.82 10.82 41.49 3.56
2477 6420 6.194463 CCAAGAATAACAATGCAGTGTATCG 58.806 40.000 21.49 7.66 0.00 2.92
2513 6457 3.894427 ACTAGATAGATGACACCCTGCAG 59.106 47.826 6.78 6.78 0.00 4.41
2521 6465 4.828409 CACCCTGCAGATTGGTGT 57.172 55.556 24.64 7.53 43.62 4.16
2533 6477 7.067372 CCTGCAGATTGGTGTAAGAATTATTCA 59.933 37.037 17.39 0.00 30.46 2.57
2534 6478 7.761409 TGCAGATTGGTGTAAGAATTATTCAC 58.239 34.615 7.74 0.00 30.46 3.18
2535 6479 7.148086 TGCAGATTGGTGTAAGAATTATTCACC 60.148 37.037 19.18 19.18 45.83 4.02
2689 7795 3.102052 ACAGTTGAGCCTTTTTGCATG 57.898 42.857 0.00 0.00 0.00 4.06
2831 7937 6.325596 TGCCTTTTGTTTTGGTTAATTTTGC 58.674 32.000 0.00 0.00 0.00 3.68
2832 7938 5.746245 GCCTTTTGTTTTGGTTAATTTTGCC 59.254 36.000 0.00 0.00 0.00 4.52
2844 7950 7.222872 TGGTTAATTTTGCCAATTGTCAAGAT 58.777 30.769 1.78 0.75 0.00 2.40
2909 8015 3.937814 ACAAGATGCGGTGTTATCTTCA 58.062 40.909 0.00 0.00 40.62 3.02
2940 8060 9.618890 TTGCTCTAAACTTCTAATGATATGCTT 57.381 29.630 0.00 0.00 0.00 3.91
2941 8061 9.049523 TGCTCTAAACTTCTAATGATATGCTTG 57.950 33.333 0.00 0.00 0.00 4.01
2984 8115 6.377146 GTCTATGCTTTGAGGGAATGGTTTTA 59.623 38.462 0.00 0.00 0.00 1.52
2989 8120 8.830915 TGCTTTGAGGGAATGGTTTTATTATA 57.169 30.769 0.00 0.00 0.00 0.98
3083 8214 2.034507 GCGCAACTTCACTGATATCGAC 60.035 50.000 0.30 0.00 0.00 4.20
3098 8229 7.646922 ACTGATATCGACGACAAGGTAATAAAC 59.353 37.037 0.00 0.00 0.00 2.01
3099 8230 7.709947 TGATATCGACGACAAGGTAATAAACT 58.290 34.615 0.00 0.00 0.00 2.66
3105 8236 7.699391 TCGACGACAAGGTAATAAACTATTGAG 59.301 37.037 0.00 0.00 32.47 3.02
3157 8288 9.028185 GTACCGAGTAAAATAATAGGAACTGTG 57.972 37.037 0.00 0.00 41.52 3.66
3190 8321 1.766494 TGGTCATGTTGGATGGATGC 58.234 50.000 0.00 0.00 0.00 3.91
3263 8394 5.420725 TTCCTGTACTGTTATGCACTCAT 57.579 39.130 0.00 0.00 36.73 2.90
3264 8395 5.420725 TCCTGTACTGTTATGCACTCATT 57.579 39.130 0.00 0.00 34.22 2.57
3293 8438 4.599047 TTGCCTAATTCCCTGTTTTGTG 57.401 40.909 0.00 0.00 0.00 3.33
3339 8484 8.954950 TCTTCTGTTTATCTTCCATCTGATTC 57.045 34.615 0.00 0.00 0.00 2.52
3352 8504 9.924650 CTTCCATCTGATTCTTTCTTTTGAAAT 57.075 29.630 0.00 0.00 46.05 2.17
3387 8539 5.701224 TGGGTTTTGAACTAACTTCTGGAT 58.299 37.500 0.00 0.00 0.00 3.41
3388 8540 6.133356 TGGGTTTTGAACTAACTTCTGGATT 58.867 36.000 0.00 0.00 0.00 3.01
3453 8605 4.155462 TCTGAAATGCATCTCACTGAAAGC 59.845 41.667 0.00 0.00 37.60 3.51
3483 8637 2.057137 ATCTTGGGTGCGTGCAATAT 57.943 45.000 0.00 0.00 0.00 1.28
3495 8649 5.006649 GTGCGTGCAATATGAGATAGTCAAA 59.993 40.000 0.00 0.00 39.19 2.69
3502 8656 9.269453 TGCAATATGAGATAGTCAAATTCTGAG 57.731 33.333 0.00 0.00 39.19 3.35
3661 8815 2.148916 TGTGACGGAGCACACTAAAG 57.851 50.000 4.25 0.00 43.35 1.85
3692 8846 9.975218 AATAGATTTGATAACCAAGGTACTGTT 57.025 29.630 0.00 0.00 40.86 3.16
3738 8900 6.155475 TGTTCAACCACAATAAGGGAAAAG 57.845 37.500 0.00 0.00 0.00 2.27
3777 8939 9.466497 AGAAGGATAACTGATCAATTTGCTTAA 57.534 29.630 0.00 0.00 36.12 1.85
3798 8960 2.289444 ACTGTACTTGTCACCCATTCCG 60.289 50.000 0.00 0.00 0.00 4.30
3811 8973 2.560542 CCCATTCCGTGAAATCAAACCA 59.439 45.455 0.00 0.00 0.00 3.67
3846 9008 1.846007 TTAACTTCCCCATTGCGCAT 58.154 45.000 12.75 0.00 0.00 4.73
3861 9023 2.712057 CGCATGAGGGCATAAAATCC 57.288 50.000 0.00 0.00 32.27 3.01
3865 9027 3.801293 GCATGAGGGCATAAAATCCAAGC 60.801 47.826 0.00 0.00 32.27 4.01
3884 9046 6.378848 TCCAAGCTGTTTACTTTTACTGGTTT 59.621 34.615 0.00 0.00 33.56 3.27
3907 9069 9.034544 GTTTCATAATTCATACCATTTGGCTTC 57.965 33.333 0.00 0.00 39.32 3.86
3911 9073 4.782019 TTCATACCATTTGGCTTCACAC 57.218 40.909 0.00 0.00 39.32 3.82
4061 9224 5.219739 AGGAGCTTAGACCATAATCTTCCA 58.780 41.667 0.00 0.00 28.11 3.53
4079 9242 0.532862 CAGGGTCACGAGTTGCTGTT 60.533 55.000 0.00 0.00 0.00 3.16
4129 9292 5.991933 TTTGCATTATGGAAGGTGCTTAA 57.008 34.783 0.00 0.00 38.37 1.85
4196 9362 6.012658 TGCCTTTAGTCAAGTGCTTAATTG 57.987 37.500 0.00 0.00 32.63 2.32
4349 9526 1.821216 TTCATGGCGGAGGAAAAGAC 58.179 50.000 0.00 0.00 0.00 3.01
4509 9686 3.007398 CACTATCAGAGATGTAAGGGGGC 59.993 52.174 0.00 0.00 0.00 5.80
4519 9696 2.119495 TGTAAGGGGGCTGAATCTCTC 58.881 52.381 0.00 0.00 0.00 3.20
4529 9706 3.938334 GGCTGAATCTCTCCTTTTCTGTC 59.062 47.826 0.00 0.00 0.00 3.51
4729 10039 9.337396 CTACATTTATCAGGTACTTAATGCCAA 57.663 33.333 0.00 0.00 34.60 4.52
4740 10050 2.645838 TAATGCCAAGATGCTCCCTC 57.354 50.000 0.00 0.00 0.00 4.30
4749 10059 4.141298 CCAAGATGCTCCCTCCTTTTATCT 60.141 45.833 0.00 0.00 0.00 1.98
4753 10063 3.724478 TGCTCCCTCCTTTTATCTGAGA 58.276 45.455 0.00 0.00 0.00 3.27
4844 10156 6.264744 TCTGAAGAGGTTATATCCTTGTACCG 59.735 42.308 3.81 0.00 38.02 4.02
4944 10256 2.785713 TGTCGAACGATCTTCACACA 57.214 45.000 0.00 0.00 0.00 3.72
4965 10277 2.899339 GGCGCCCTTGATGAGCTC 60.899 66.667 18.11 6.82 0.00 4.09
5025 10337 3.521560 TCTGAAGGTATTTACGCTGCAG 58.478 45.455 10.11 10.11 34.29 4.41
5041 10353 1.066002 TGCAGCTTGAGTTTTGCAGTC 59.934 47.619 0.00 0.00 41.23 3.51
5096 10416 7.766278 TGAAAGGAAAGTAACTCATCTGATAGC 59.234 37.037 0.00 0.00 0.00 2.97
5244 10573 4.579869 GAGGAGAAACAGCAGGAACATTA 58.420 43.478 0.00 0.00 0.00 1.90
5245 10574 4.583871 AGGAGAAACAGCAGGAACATTAG 58.416 43.478 0.00 0.00 0.00 1.73
5246 10575 3.127721 GGAGAAACAGCAGGAACATTAGC 59.872 47.826 0.00 0.00 0.00 3.09
5247 10576 3.084786 AGAAACAGCAGGAACATTAGCC 58.915 45.455 0.00 0.00 0.00 3.93
5248 10577 1.839424 AACAGCAGGAACATTAGCCC 58.161 50.000 0.00 0.00 0.00 5.19
5249 10578 0.034089 ACAGCAGGAACATTAGCCCC 60.034 55.000 0.00 0.00 0.00 5.80
5250 10579 0.257039 CAGCAGGAACATTAGCCCCT 59.743 55.000 0.00 0.00 0.00 4.79
5251 10580 1.002857 AGCAGGAACATTAGCCCCTT 58.997 50.000 0.00 0.00 0.00 3.95
5252 10581 1.064389 AGCAGGAACATTAGCCCCTTC 60.064 52.381 0.00 0.00 0.00 3.46
5253 10582 2.024306 GCAGGAACATTAGCCCCTTCC 61.024 57.143 0.00 0.00 33.57 3.46
5254 10583 0.927029 AGGAACATTAGCCCCTTCCC 59.073 55.000 0.00 0.00 33.83 3.97
5255 10584 0.629058 GGAACATTAGCCCCTTCCCA 59.371 55.000 0.00 0.00 0.00 4.37
5256 10585 1.410224 GGAACATTAGCCCCTTCCCAG 60.410 57.143 0.00 0.00 0.00 4.45
5257 10586 1.285078 GAACATTAGCCCCTTCCCAGT 59.715 52.381 0.00 0.00 0.00 4.00
5258 10587 0.625849 ACATTAGCCCCTTCCCAGTG 59.374 55.000 0.00 0.00 0.00 3.66
5259 10588 0.753111 CATTAGCCCCTTCCCAGTGC 60.753 60.000 0.00 0.00 0.00 4.40
5260 10589 0.921256 ATTAGCCCCTTCCCAGTGCT 60.921 55.000 0.00 0.00 36.11 4.40
5261 10590 1.140134 TTAGCCCCTTCCCAGTGCTT 61.140 55.000 0.00 0.00 33.63 3.91
5262 10591 1.562672 TAGCCCCTTCCCAGTGCTTC 61.563 60.000 0.00 0.00 33.63 3.86
5263 10592 3.170362 CCCCTTCCCAGTGCTTCA 58.830 61.111 0.00 0.00 0.00 3.02
5264 10593 1.460255 CCCCTTCCCAGTGCTTCAA 59.540 57.895 0.00 0.00 0.00 2.69
5265 10594 0.610232 CCCCTTCCCAGTGCTTCAAG 60.610 60.000 0.00 0.00 0.00 3.02
5266 10595 0.610232 CCCTTCCCAGTGCTTCAAGG 60.610 60.000 0.00 0.00 34.47 3.61
5267 10596 0.111253 CCTTCCCAGTGCTTCAAGGT 59.889 55.000 0.00 0.00 30.69 3.50
5268 10597 1.242076 CTTCCCAGTGCTTCAAGGTG 58.758 55.000 0.00 0.00 0.00 4.00
5269 10598 0.550914 TTCCCAGTGCTTCAAGGTGT 59.449 50.000 0.00 0.00 0.00 4.16
5270 10599 1.429930 TCCCAGTGCTTCAAGGTGTA 58.570 50.000 0.00 0.00 0.00 2.90
5271 10600 1.071699 TCCCAGTGCTTCAAGGTGTAC 59.928 52.381 0.00 0.00 0.00 2.90
5272 10601 1.202758 CCCAGTGCTTCAAGGTGTACA 60.203 52.381 0.00 0.00 0.00 2.90
5273 10602 2.146342 CCAGTGCTTCAAGGTGTACAG 58.854 52.381 0.00 0.00 0.00 2.74
5274 10603 2.146342 CAGTGCTTCAAGGTGTACAGG 58.854 52.381 0.00 0.00 0.00 4.00
5275 10604 1.768870 AGTGCTTCAAGGTGTACAGGT 59.231 47.619 0.00 0.00 0.00 4.00
5276 10605 1.873591 GTGCTTCAAGGTGTACAGGTG 59.126 52.381 0.00 0.00 0.00 4.00
5277 10606 1.488812 TGCTTCAAGGTGTACAGGTGT 59.511 47.619 0.00 0.00 0.00 4.16
5278 10607 2.092646 TGCTTCAAGGTGTACAGGTGTT 60.093 45.455 0.00 0.00 0.00 3.32
5279 10608 3.134985 TGCTTCAAGGTGTACAGGTGTTA 59.865 43.478 0.00 0.00 0.00 2.41
5280 10609 4.131596 GCTTCAAGGTGTACAGGTGTTAA 58.868 43.478 0.00 0.00 0.00 2.01
5281 10610 4.213482 GCTTCAAGGTGTACAGGTGTTAAG 59.787 45.833 0.00 0.00 0.00 1.85
5282 10611 4.345859 TCAAGGTGTACAGGTGTTAAGG 57.654 45.455 0.00 0.00 0.00 2.69
5283 10612 3.071892 TCAAGGTGTACAGGTGTTAAGGG 59.928 47.826 0.00 0.00 0.00 3.95
5284 10613 1.350019 AGGTGTACAGGTGTTAAGGGC 59.650 52.381 0.00 0.00 0.00 5.19
5285 10614 1.435577 GTGTACAGGTGTTAAGGGCG 58.564 55.000 0.00 0.00 0.00 6.13
5286 10615 0.320946 TGTACAGGTGTTAAGGGCGC 60.321 55.000 0.00 0.00 0.00 6.53
5287 10616 1.022982 GTACAGGTGTTAAGGGCGCC 61.023 60.000 21.18 21.18 36.81 6.53
5288 10617 1.481901 TACAGGTGTTAAGGGCGCCA 61.482 55.000 30.85 4.32 38.87 5.69
5289 10618 2.033602 AGGTGTTAAGGGCGCCAC 59.966 61.111 30.85 18.57 38.87 5.01
5290 10619 2.281900 GGTGTTAAGGGCGCCACA 60.282 61.111 30.85 21.25 36.58 4.17
5291 10620 1.677633 GGTGTTAAGGGCGCCACAT 60.678 57.895 30.85 16.04 36.58 3.21
5292 10621 0.393267 GGTGTTAAGGGCGCCACATA 60.393 55.000 30.85 14.90 36.58 2.29
5293 10622 1.455248 GTGTTAAGGGCGCCACATAA 58.545 50.000 30.85 19.98 0.00 1.90
5294 10623 1.813786 GTGTTAAGGGCGCCACATAAA 59.186 47.619 30.85 11.75 0.00 1.40
5295 10624 1.813786 TGTTAAGGGCGCCACATAAAC 59.186 47.619 30.85 22.50 0.00 2.01
5296 10625 1.813786 GTTAAGGGCGCCACATAAACA 59.186 47.619 30.85 0.00 0.00 2.83
5297 10626 2.201921 TAAGGGCGCCACATAAACAA 57.798 45.000 30.85 0.00 0.00 2.83
5298 10627 1.333177 AAGGGCGCCACATAAACAAA 58.667 45.000 30.85 0.00 0.00 2.83
5299 10628 1.333177 AGGGCGCCACATAAACAAAA 58.667 45.000 30.85 0.00 0.00 2.44
5300 10629 1.689273 AGGGCGCCACATAAACAAAAA 59.311 42.857 30.85 0.00 0.00 1.94
5322 10651 7.507733 AAAAATGATGTGGCAAAGCAATTAA 57.492 28.000 0.00 0.00 0.00 1.40
5323 10652 7.507733 AAAATGATGTGGCAAAGCAATTAAA 57.492 28.000 0.00 0.00 0.00 1.52
5324 10653 6.730960 AATGATGTGGCAAAGCAATTAAAG 57.269 33.333 0.00 0.00 0.00 1.85
5325 10654 5.465532 TGATGTGGCAAAGCAATTAAAGA 57.534 34.783 0.00 0.00 0.00 2.52
5326 10655 5.472148 TGATGTGGCAAAGCAATTAAAGAG 58.528 37.500 0.00 0.00 0.00 2.85
5327 10656 4.255833 TGTGGCAAAGCAATTAAAGAGG 57.744 40.909 0.00 0.00 0.00 3.69
5328 10657 3.894427 TGTGGCAAAGCAATTAAAGAGGA 59.106 39.130 0.00 0.00 0.00 3.71
5329 10658 4.022068 TGTGGCAAAGCAATTAAAGAGGAG 60.022 41.667 0.00 0.00 0.00 3.69
5330 10659 4.218417 GTGGCAAAGCAATTAAAGAGGAGA 59.782 41.667 0.00 0.00 0.00 3.71
5331 10660 4.460382 TGGCAAAGCAATTAAAGAGGAGAG 59.540 41.667 0.00 0.00 0.00 3.20
5332 10661 4.702131 GGCAAAGCAATTAAAGAGGAGAGA 59.298 41.667 0.00 0.00 0.00 3.10
5333 10662 5.163673 GGCAAAGCAATTAAAGAGGAGAGAG 60.164 44.000 0.00 0.00 0.00 3.20
5334 10663 5.163673 GCAAAGCAATTAAAGAGGAGAGAGG 60.164 44.000 0.00 0.00 0.00 3.69
5335 10664 4.769345 AGCAATTAAAGAGGAGAGAGGG 57.231 45.455 0.00 0.00 0.00 4.30
5336 10665 3.118075 AGCAATTAAAGAGGAGAGAGGGC 60.118 47.826 0.00 0.00 0.00 5.19
5337 10666 3.370953 GCAATTAAAGAGGAGAGAGGGCA 60.371 47.826 0.00 0.00 0.00 5.36
5338 10667 4.688321 GCAATTAAAGAGGAGAGAGGGCAT 60.688 45.833 0.00 0.00 0.00 4.40
5339 10668 5.444176 CAATTAAAGAGGAGAGAGGGCATT 58.556 41.667 0.00 0.00 0.00 3.56
5340 10669 6.595682 CAATTAAAGAGGAGAGAGGGCATTA 58.404 40.000 0.00 0.00 0.00 1.90
5341 10670 7.230027 CAATTAAAGAGGAGAGAGGGCATTAT 58.770 38.462 0.00 0.00 0.00 1.28
5342 10671 4.703379 AAAGAGGAGAGAGGGCATTATG 57.297 45.455 0.00 0.00 0.00 1.90
5343 10672 2.618794 AGAGGAGAGAGGGCATTATGG 58.381 52.381 0.00 0.00 0.00 2.74
5344 10673 2.090267 AGAGGAGAGAGGGCATTATGGT 60.090 50.000 0.00 0.00 0.00 3.55
5345 10674 2.038295 GAGGAGAGAGGGCATTATGGTG 59.962 54.545 0.00 0.00 0.00 4.17
5346 10675 2.050144 GGAGAGAGGGCATTATGGTGA 58.950 52.381 0.00 0.00 0.00 4.02
5347 10676 2.224402 GGAGAGAGGGCATTATGGTGAC 60.224 54.545 0.00 0.00 0.00 3.67
5353 10682 1.392589 GGCATTATGGTGACCACAGG 58.607 55.000 6.40 0.00 35.80 4.00
5354 10683 1.064758 GGCATTATGGTGACCACAGGA 60.065 52.381 6.40 0.00 35.80 3.86
5355 10684 2.620367 GGCATTATGGTGACCACAGGAA 60.620 50.000 6.40 0.00 35.80 3.36
5356 10685 2.684881 GCATTATGGTGACCACAGGAAG 59.315 50.000 6.40 0.00 35.80 3.46
5357 10686 3.622206 GCATTATGGTGACCACAGGAAGA 60.622 47.826 6.40 0.00 35.80 2.87
5358 10687 4.588899 CATTATGGTGACCACAGGAAGAA 58.411 43.478 6.40 0.00 35.80 2.52
5359 10688 4.715534 TTATGGTGACCACAGGAAGAAA 57.284 40.909 6.40 0.00 35.80 2.52
5360 10689 2.341846 TGGTGACCACAGGAAGAAAC 57.658 50.000 0.00 0.00 0.00 2.78
5361 10690 1.226746 GGTGACCACAGGAAGAAACG 58.773 55.000 0.00 0.00 0.00 3.60
5362 10691 1.226746 GTGACCACAGGAAGAAACGG 58.773 55.000 0.00 0.00 0.00 4.44
5363 10692 0.834612 TGACCACAGGAAGAAACGGT 59.165 50.000 0.00 0.00 0.00 4.83
5364 10693 1.226746 GACCACAGGAAGAAACGGTG 58.773 55.000 0.00 0.00 0.00 4.94
5365 10694 0.818040 ACCACAGGAAGAAACGGTGC 60.818 55.000 0.00 0.00 0.00 5.01
5366 10695 0.535102 CCACAGGAAGAAACGGTGCT 60.535 55.000 0.00 0.00 0.00 4.40
5367 10696 1.270625 CCACAGGAAGAAACGGTGCTA 60.271 52.381 0.00 0.00 0.00 3.49
5368 10697 2.489971 CACAGGAAGAAACGGTGCTAA 58.510 47.619 0.00 0.00 0.00 3.09
5369 10698 2.480419 CACAGGAAGAAACGGTGCTAAG 59.520 50.000 0.00 0.00 0.00 2.18
5370 10699 1.464997 CAGGAAGAAACGGTGCTAAGC 59.535 52.381 0.00 0.00 0.00 3.09
5371 10700 1.071699 AGGAAGAAACGGTGCTAAGCA 59.928 47.619 0.00 0.00 35.60 3.91
5380 10709 3.691342 TGCTAAGCACGCGGACCT 61.691 61.111 12.47 0.00 31.71 3.85
5381 10710 2.344981 TGCTAAGCACGCGGACCTA 61.345 57.895 12.47 0.00 31.71 3.08
5382 10711 1.067582 GCTAAGCACGCGGACCTAT 59.932 57.895 12.47 0.00 0.00 2.57
5383 10712 1.215655 GCTAAGCACGCGGACCTATG 61.216 60.000 12.47 0.00 0.00 2.23
5384 10713 0.102481 CTAAGCACGCGGACCTATGT 59.898 55.000 12.47 0.00 0.00 2.29
5385 10714 1.335810 CTAAGCACGCGGACCTATGTA 59.664 52.381 12.47 0.00 0.00 2.29
5386 10715 0.533491 AAGCACGCGGACCTATGTAA 59.467 50.000 12.47 0.00 0.00 2.41
5387 10716 0.102481 AGCACGCGGACCTATGTAAG 59.898 55.000 12.47 0.00 0.00 2.34
5388 10717 0.101759 GCACGCGGACCTATGTAAGA 59.898 55.000 12.47 0.00 0.00 2.10
5389 10718 1.470285 GCACGCGGACCTATGTAAGAA 60.470 52.381 12.47 0.00 0.00 2.52
5390 10719 2.460918 CACGCGGACCTATGTAAGAAG 58.539 52.381 12.47 0.00 0.00 2.85
5391 10720 1.407979 ACGCGGACCTATGTAAGAAGG 59.592 52.381 12.47 0.00 38.93 3.46
5392 10721 1.867166 GCGGACCTATGTAAGAAGGC 58.133 55.000 0.00 0.00 36.24 4.35
5393 10722 1.413077 GCGGACCTATGTAAGAAGGCT 59.587 52.381 0.00 0.00 36.24 4.58
5394 10723 2.626743 GCGGACCTATGTAAGAAGGCTA 59.373 50.000 0.00 0.00 36.24 3.93
5395 10724 3.552478 GCGGACCTATGTAAGAAGGCTAC 60.552 52.174 0.00 0.00 36.24 3.58
5396 10725 3.005578 CGGACCTATGTAAGAAGGCTACC 59.994 52.174 0.00 0.00 36.24 3.18
5397 10726 3.965347 GGACCTATGTAAGAAGGCTACCA 59.035 47.826 0.00 0.00 36.24 3.25
5398 10727 4.407945 GGACCTATGTAAGAAGGCTACCAA 59.592 45.833 0.00 0.00 36.24 3.67
5399 10728 5.354842 ACCTATGTAAGAAGGCTACCAAC 57.645 43.478 0.00 0.00 36.24 3.77
5400 10729 4.163649 ACCTATGTAAGAAGGCTACCAACC 59.836 45.833 0.00 0.00 36.24 3.77
5401 10730 4.163458 CCTATGTAAGAAGGCTACCAACCA 59.837 45.833 0.00 0.00 0.00 3.67
5402 10731 4.650972 ATGTAAGAAGGCTACCAACCAA 57.349 40.909 0.00 0.00 0.00 3.67
5403 10732 4.650972 TGTAAGAAGGCTACCAACCAAT 57.349 40.909 0.00 0.00 0.00 3.16
5404 10733 5.765576 TGTAAGAAGGCTACCAACCAATA 57.234 39.130 0.00 0.00 0.00 1.90
5405 10734 5.493809 TGTAAGAAGGCTACCAACCAATAC 58.506 41.667 0.00 0.00 0.00 1.89
5406 10735 4.650972 AAGAAGGCTACCAACCAATACA 57.349 40.909 0.00 0.00 0.00 2.29
5407 10736 4.862641 AGAAGGCTACCAACCAATACAT 57.137 40.909 0.00 0.00 0.00 2.29
5408 10737 4.526970 AGAAGGCTACCAACCAATACATG 58.473 43.478 0.00 0.00 0.00 3.21
5409 10738 4.227300 AGAAGGCTACCAACCAATACATGA 59.773 41.667 0.00 0.00 0.00 3.07
5410 10739 4.156455 AGGCTACCAACCAATACATGAG 57.844 45.455 0.00 0.00 0.00 2.90
5411 10740 3.780294 AGGCTACCAACCAATACATGAGA 59.220 43.478 0.00 0.00 0.00 3.27
5412 10741 4.130118 GGCTACCAACCAATACATGAGAG 58.870 47.826 0.00 0.00 0.00 3.20
5413 10742 4.141711 GGCTACCAACCAATACATGAGAGA 60.142 45.833 0.00 0.00 0.00 3.10
5414 10743 5.053145 GCTACCAACCAATACATGAGAGAG 58.947 45.833 0.00 0.00 0.00 3.20
5415 10744 5.395768 GCTACCAACCAATACATGAGAGAGT 60.396 44.000 0.00 0.00 0.00 3.24
5416 10745 5.505181 ACCAACCAATACATGAGAGAGTT 57.495 39.130 0.00 0.00 0.00 3.01
5417 10746 5.880901 ACCAACCAATACATGAGAGAGTTT 58.119 37.500 0.00 0.00 0.00 2.66
5418 10747 7.016153 ACCAACCAATACATGAGAGAGTTTA 57.984 36.000 0.00 0.00 0.00 2.01
5419 10748 7.458397 ACCAACCAATACATGAGAGAGTTTAA 58.542 34.615 0.00 0.00 0.00 1.52
5420 10749 8.109634 ACCAACCAATACATGAGAGAGTTTAAT 58.890 33.333 0.00 0.00 0.00 1.40
5421 10750 8.960591 CCAACCAATACATGAGAGAGTTTAATT 58.039 33.333 0.00 0.00 0.00 1.40
5450 10779 3.226884 TCCACGTGGAAAGCTTAGC 57.773 52.632 34.60 0.00 42.18 3.09
5451 10780 0.685097 TCCACGTGGAAAGCTTAGCT 59.315 50.000 34.60 0.00 42.18 3.32
5452 10781 1.897133 TCCACGTGGAAAGCTTAGCTA 59.103 47.619 34.60 7.51 42.18 3.32
5453 10782 2.000447 CCACGTGGAAAGCTTAGCTAC 59.000 52.381 31.31 4.96 35.76 3.58
5454 10783 2.000447 CACGTGGAAAGCTTAGCTACC 59.000 52.381 18.55 18.55 38.25 3.18
5455 10784 1.066358 ACGTGGAAAGCTTAGCTACCC 60.066 52.381 21.09 18.20 38.25 3.69
5456 10785 1.066430 CGTGGAAAGCTTAGCTACCCA 60.066 52.381 18.96 18.96 38.25 4.51
5457 10786 2.614481 CGTGGAAAGCTTAGCTACCCAA 60.614 50.000 22.68 9.65 40.18 4.12
5458 10787 3.010420 GTGGAAAGCTTAGCTACCCAAG 58.990 50.000 22.68 0.00 40.18 3.61
5467 10796 4.625800 CTACCCAAGCTCAGCACC 57.374 61.111 0.00 0.00 0.00 5.01
5468 10797 1.986413 CTACCCAAGCTCAGCACCT 59.014 57.895 0.00 0.00 0.00 4.00
5469 10798 1.195115 CTACCCAAGCTCAGCACCTA 58.805 55.000 0.00 0.00 0.00 3.08
5470 10799 1.765314 CTACCCAAGCTCAGCACCTAT 59.235 52.381 0.00 0.00 0.00 2.57
5471 10800 0.254178 ACCCAAGCTCAGCACCTATG 59.746 55.000 0.00 0.00 0.00 2.23
5483 10812 1.972872 CACCTATGCATTGGGGAGAC 58.027 55.000 27.42 0.00 0.00 3.36
5484 10813 1.492176 CACCTATGCATTGGGGAGACT 59.508 52.381 27.42 6.06 0.00 3.24
5485 10814 2.705658 CACCTATGCATTGGGGAGACTA 59.294 50.000 27.42 0.00 0.00 2.59
5486 10815 2.975489 ACCTATGCATTGGGGAGACTAG 59.025 50.000 27.42 5.56 0.00 2.57
5487 10816 2.975489 CCTATGCATTGGGGAGACTAGT 59.025 50.000 18.33 0.00 0.00 2.57
5488 10817 3.392616 CCTATGCATTGGGGAGACTAGTT 59.607 47.826 18.33 0.00 0.00 2.24
5489 10818 2.787473 TGCATTGGGGAGACTAGTTG 57.213 50.000 0.00 0.00 0.00 3.16
5490 10819 1.340017 TGCATTGGGGAGACTAGTTGC 60.340 52.381 0.00 0.42 0.00 4.17
5491 10820 1.065126 GCATTGGGGAGACTAGTTGCT 60.065 52.381 0.00 0.00 0.00 3.91
5492 10821 2.170607 GCATTGGGGAGACTAGTTGCTA 59.829 50.000 0.00 0.00 0.00 3.49
5493 10822 3.370527 GCATTGGGGAGACTAGTTGCTAA 60.371 47.826 0.00 0.00 0.00 3.09
5494 10823 4.446371 CATTGGGGAGACTAGTTGCTAAG 58.554 47.826 0.00 0.00 0.00 2.18
5495 10824 3.468071 TGGGGAGACTAGTTGCTAAGA 57.532 47.619 0.00 0.00 0.00 2.10
5496 10825 3.995636 TGGGGAGACTAGTTGCTAAGAT 58.004 45.455 0.00 0.00 0.00 2.40
5497 10826 4.362677 TGGGGAGACTAGTTGCTAAGATT 58.637 43.478 0.00 0.00 0.00 2.40
5498 10827 4.783227 TGGGGAGACTAGTTGCTAAGATTT 59.217 41.667 0.00 0.00 0.00 2.17
5499 10828 5.250774 TGGGGAGACTAGTTGCTAAGATTTT 59.749 40.000 0.00 0.00 0.00 1.82
5500 10829 6.442564 TGGGGAGACTAGTTGCTAAGATTTTA 59.557 38.462 0.00 0.00 0.00 1.52
5501 10830 7.037873 TGGGGAGACTAGTTGCTAAGATTTTAA 60.038 37.037 0.00 0.00 0.00 1.52
5542 10871 2.844146 CACGGCGAAGTCACGAAC 59.156 61.111 16.62 0.00 35.09 3.95
5745 11075 2.106683 CAAGAGTTTAGGCCGGGCG 61.107 63.158 23.81 0.14 0.00 6.13
6047 11379 3.637273 GACGGCCCAGGTCAAGGT 61.637 66.667 0.00 0.00 34.56 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.778534 ATTTCAGAAATCAGCACACAGG 57.221 40.909 2.20 0.00 0.00 4.00
51 52 2.485479 CCCTTCTACGCCTGCATTACAT 60.485 50.000 0.00 0.00 0.00 2.29
54 55 0.468226 CCCCTTCTACGCCTGCATTA 59.532 55.000 0.00 0.00 0.00 1.90
152 153 1.615392 AGGACAAGACCAAGCAAATGC 59.385 47.619 0.00 0.00 42.49 3.56
220 221 5.428457 ACCATGTCCACATATTCACCTAGAA 59.572 40.000 0.00 0.00 36.01 2.10
251 252 3.054434 CCTTCAGTGGGTCAATGATACCA 60.054 47.826 5.67 5.67 38.25 3.25
319 320 5.316167 TCAACTATCATGAGCACAAGGTTT 58.684 37.500 0.09 0.00 0.00 3.27
326 327 6.385843 AGATACGATCAACTATCATGAGCAC 58.614 40.000 0.09 0.00 32.91 4.40
360 371 4.337555 AGTGCTGGTGCTCATCAAATATTC 59.662 41.667 0.00 0.00 40.48 1.75
433 444 0.605589 CCTCTACGATGATGGCCTCC 59.394 60.000 3.32 0.00 0.00 4.30
487 498 1.000233 GTCCATTCCACCCATGCCA 60.000 57.895 0.00 0.00 0.00 4.92
505 516 3.425525 CGTGCGTATTCATGGCTTAGTAG 59.574 47.826 0.00 0.00 0.00 2.57
520 531 0.109039 TGCTTCACATAGCGTGCGTA 60.109 50.000 0.00 0.00 45.92 4.42
528 539 5.633830 ATGTTCCAGTTTGCTTCACATAG 57.366 39.130 0.00 0.00 0.00 2.23
532 543 5.163513 CCAATATGTTCCAGTTTGCTTCAC 58.836 41.667 0.00 0.00 0.00 3.18
585 596 9.579768 CCCATCGACAATAAAATTACATCAAAA 57.420 29.630 0.00 0.00 0.00 2.44
643 654 2.613506 CCCAACGCTGGTTCCGTTC 61.614 63.158 3.77 0.00 45.99 3.95
670 681 2.352034 CAGCTCTCGCGACTACTCTTTA 59.648 50.000 3.71 0.00 42.32 1.85
671 682 1.131504 CAGCTCTCGCGACTACTCTTT 59.868 52.381 3.71 0.00 42.32 2.52
673 684 0.108089 TCAGCTCTCGCGACTACTCT 60.108 55.000 3.71 0.00 42.32 3.24
674 685 0.727970 TTCAGCTCTCGCGACTACTC 59.272 55.000 3.71 0.00 42.32 2.59
678 689 0.664767 GTGTTTCAGCTCTCGCGACT 60.665 55.000 3.71 0.00 42.32 4.18
681 692 0.162507 CAAGTGTTTCAGCTCTCGCG 59.837 55.000 0.00 0.00 42.32 5.87
682 693 1.502231 TCAAGTGTTTCAGCTCTCGC 58.498 50.000 0.00 0.00 0.00 5.03
700 711 4.318831 GGCGTCATTAATCAGTTTCCGATC 60.319 45.833 0.00 0.00 0.00 3.69
701 712 3.560068 GGCGTCATTAATCAGTTTCCGAT 59.440 43.478 0.00 0.00 0.00 4.18
702 713 2.933906 GGCGTCATTAATCAGTTTCCGA 59.066 45.455 0.00 0.00 0.00 4.55
703 714 2.936498 AGGCGTCATTAATCAGTTTCCG 59.064 45.455 0.00 0.00 0.00 4.30
704 715 3.487544 GCAGGCGTCATTAATCAGTTTCC 60.488 47.826 0.00 0.00 0.00 3.13
706 717 3.127548 CAGCAGGCGTCATTAATCAGTTT 59.872 43.478 0.00 0.00 0.00 2.66
771 782 5.063438 CGAGAGAACAAACAAGTGAAGTGAA 59.937 40.000 0.00 0.00 0.00 3.18
772 783 4.566759 CGAGAGAACAAACAAGTGAAGTGA 59.433 41.667 0.00 0.00 0.00 3.41
773 784 4.330074 ACGAGAGAACAAACAAGTGAAGTG 59.670 41.667 0.00 0.00 0.00 3.16
774 785 4.504858 ACGAGAGAACAAACAAGTGAAGT 58.495 39.130 0.00 0.00 0.00 3.01
775 786 4.806247 AGACGAGAGAACAAACAAGTGAAG 59.194 41.667 0.00 0.00 0.00 3.02
776 787 4.755411 AGACGAGAGAACAAACAAGTGAA 58.245 39.130 0.00 0.00 0.00 3.18
777 788 4.386867 AGACGAGAGAACAAACAAGTGA 57.613 40.909 0.00 0.00 0.00 3.41
779 790 5.844004 ACATAGACGAGAGAACAAACAAGT 58.156 37.500 0.00 0.00 0.00 3.16
780 791 6.771188 AACATAGACGAGAGAACAAACAAG 57.229 37.500 0.00 0.00 0.00 3.16
782 793 5.854866 CGTAACATAGACGAGAGAACAAACA 59.145 40.000 0.00 0.00 42.98 2.83
783 794 6.082338 TCGTAACATAGACGAGAGAACAAAC 58.918 40.000 0.00 0.00 43.99 2.93
784 795 6.245115 TCGTAACATAGACGAGAGAACAAA 57.755 37.500 0.00 0.00 43.99 2.83
785 796 5.868043 TCGTAACATAGACGAGAGAACAA 57.132 39.130 0.00 0.00 43.99 2.83
812 823 1.523758 GTGCAGAACAAGGGACGATT 58.476 50.000 0.00 0.00 0.00 3.34
849 860 5.667466 ACGACCGGACAAATACTTCATTAT 58.333 37.500 9.46 0.00 0.00 1.28
853 864 3.061322 CAACGACCGGACAAATACTTCA 58.939 45.455 9.46 0.00 0.00 3.02
854 865 2.414138 CCAACGACCGGACAAATACTTC 59.586 50.000 9.46 0.00 0.00 3.01
855 866 2.037511 TCCAACGACCGGACAAATACTT 59.962 45.455 9.46 0.00 0.00 2.24
856 867 1.619827 TCCAACGACCGGACAAATACT 59.380 47.619 9.46 0.00 0.00 2.12
857 868 1.997606 CTCCAACGACCGGACAAATAC 59.002 52.381 9.46 0.00 0.00 1.89
858 869 1.673626 GCTCCAACGACCGGACAAATA 60.674 52.381 9.46 0.00 0.00 1.40
859 870 0.953960 GCTCCAACGACCGGACAAAT 60.954 55.000 9.46 0.00 0.00 2.32
899 912 0.040692 GAAACGGAAACTTGGTCGCC 60.041 55.000 0.00 0.00 0.00 5.54
939 952 1.338674 CCGTGCTTATGTTCTCCCACA 60.339 52.381 0.00 0.00 0.00 4.17
949 962 1.873591 GCCAACTATCCCGTGCTTATG 59.126 52.381 0.00 0.00 0.00 1.90
956 969 1.338136 CCAGGAGCCAACTATCCCGT 61.338 60.000 0.00 0.00 36.14 5.28
973 986 4.532126 TCTCAATCTCAACTCTTAAGGCCA 59.468 41.667 5.01 0.00 0.00 5.36
974 987 5.091261 TCTCAATCTCAACTCTTAAGGCC 57.909 43.478 1.85 0.00 0.00 5.19
975 988 5.971763 TCTCTCAATCTCAACTCTTAAGGC 58.028 41.667 1.85 0.00 0.00 4.35
978 991 7.632462 GCCATCTCTCTCAATCTCAACTCTTAA 60.632 40.741 0.00 0.00 0.00 1.85
979 992 6.183360 GCCATCTCTCTCAATCTCAACTCTTA 60.183 42.308 0.00 0.00 0.00 2.10
980 993 5.395546 GCCATCTCTCTCAATCTCAACTCTT 60.396 44.000 0.00 0.00 0.00 2.85
981 994 4.099881 GCCATCTCTCTCAATCTCAACTCT 59.900 45.833 0.00 0.00 0.00 3.24
984 1000 3.122297 CGCCATCTCTCTCAATCTCAAC 58.878 50.000 0.00 0.00 0.00 3.18
991 1007 1.306141 ACCCCGCCATCTCTCTCAA 60.306 57.895 0.00 0.00 0.00 3.02
992 1010 1.758514 GACCCCGCCATCTCTCTCA 60.759 63.158 0.00 0.00 0.00 3.27
993 1011 2.851071 CGACCCCGCCATCTCTCTC 61.851 68.421 0.00 0.00 0.00 3.20
994 1012 2.835431 CGACCCCGCCATCTCTCT 60.835 66.667 0.00 0.00 0.00 3.10
1032 1053 3.056179 TCATCCTCGTGTCAAACAGCATA 60.056 43.478 0.00 0.00 0.00 3.14
1041 1062 1.066858 GCCTTCTTCATCCTCGTGTCA 60.067 52.381 0.00 0.00 0.00 3.58
1052 1073 1.066143 GGAACATCTCCGCCTTCTTCA 60.066 52.381 0.00 0.00 33.37 3.02
1053 1074 1.657822 GGAACATCTCCGCCTTCTTC 58.342 55.000 0.00 0.00 33.37 2.87
1080 1101 2.877097 TGCTCACTTTGCCCTCAATA 57.123 45.000 0.00 0.00 31.33 1.90
1081 1102 1.822990 CATGCTCACTTTGCCCTCAAT 59.177 47.619 0.00 0.00 31.33 2.57
1083 1104 0.111061 ACATGCTCACTTTGCCCTCA 59.889 50.000 0.00 0.00 0.00 3.86
1186 1216 6.016610 GTCTCCAGCCAAACAGTTAAAATGTA 60.017 38.462 0.00 0.00 0.00 2.29
1187 1217 4.892934 TCTCCAGCCAAACAGTTAAAATGT 59.107 37.500 0.00 0.00 0.00 2.71
1189 1219 4.280929 GGTCTCCAGCCAAACAGTTAAAAT 59.719 41.667 0.00 0.00 0.00 1.82
1190 1220 3.634910 GGTCTCCAGCCAAACAGTTAAAA 59.365 43.478 0.00 0.00 0.00 1.52
1191 1221 3.219281 GGTCTCCAGCCAAACAGTTAAA 58.781 45.455 0.00 0.00 0.00 1.52
1193 1223 1.073284 GGGTCTCCAGCCAAACAGTTA 59.927 52.381 0.00 0.00 40.30 2.24
1194 1224 0.178990 GGGTCTCCAGCCAAACAGTT 60.179 55.000 0.00 0.00 40.30 3.16
1195 1225 1.456287 GGGTCTCCAGCCAAACAGT 59.544 57.895 0.00 0.00 40.30 3.55
1197 1227 2.391724 GACGGGTCTCCAGCCAAACA 62.392 60.000 0.00 0.00 40.64 2.83
1198 1228 1.671379 GACGGGTCTCCAGCCAAAC 60.671 63.158 0.00 0.00 40.64 2.93
1204 1252 1.519455 GCAATCGACGGGTCTCCAG 60.519 63.158 0.00 0.00 0.00 3.86
1222 1276 1.098050 CCCTCTGGCGAAATTTCAGG 58.902 55.000 17.99 14.94 0.00 3.86
1236 1290 1.558294 GTTTTGACCGTATCCCCCTCT 59.442 52.381 0.00 0.00 0.00 3.69
1239 1293 0.394762 GGGTTTTGACCGTATCCCCC 60.395 60.000 0.00 0.00 0.00 5.40
1240 1294 0.745486 CGGGTTTTGACCGTATCCCC 60.745 60.000 0.00 0.00 46.03 4.81
1284 1364 0.170339 GGAAAACGGCCACATAGTGC 59.830 55.000 2.24 0.00 31.34 4.40
1324 1418 9.841880 AGAGACGAAAAATAAAAATAGGAAAGC 57.158 29.630 0.00 0.00 0.00 3.51
1338 1528 5.377478 ACCTGAAGGAAAGAGACGAAAAAT 58.623 37.500 2.62 0.00 38.94 1.82
1340 1530 4.417426 ACCTGAAGGAAAGAGACGAAAA 57.583 40.909 2.62 0.00 38.94 2.29
1353 1543 1.000274 CCCGCTTGAAAAACCTGAAGG 60.000 52.381 0.00 0.00 42.17 3.46
1432 1622 4.079970 AGCGCTCTGGTTAGCAGTATATA 58.920 43.478 2.64 0.00 42.91 0.86
1435 1625 1.115467 AGCGCTCTGGTTAGCAGTAT 58.885 50.000 2.64 0.00 42.91 2.12
1436 1626 0.895530 AAGCGCTCTGGTTAGCAGTA 59.104 50.000 12.06 0.00 42.91 2.74
1437 1627 0.390472 GAAGCGCTCTGGTTAGCAGT 60.390 55.000 12.06 0.00 42.91 4.40
1438 1628 0.108424 AGAAGCGCTCTGGTTAGCAG 60.108 55.000 12.06 4.89 42.91 4.24
1439 1629 0.321671 AAGAAGCGCTCTGGTTAGCA 59.678 50.000 12.06 0.00 42.91 3.49
1440 1630 1.003108 GAAGAAGCGCTCTGGTTAGC 58.997 55.000 12.06 0.00 38.70 3.09
1441 1631 2.266554 CTGAAGAAGCGCTCTGGTTAG 58.733 52.381 12.06 1.41 38.70 2.34
1442 1632 1.066858 CCTGAAGAAGCGCTCTGGTTA 60.067 52.381 12.06 0.00 38.70 2.85
1443 1633 0.321122 CCTGAAGAAGCGCTCTGGTT 60.321 55.000 12.06 1.11 42.02 3.67
1444 1634 1.188219 TCCTGAAGAAGCGCTCTGGT 61.188 55.000 12.06 0.00 33.37 4.00
1445 1635 0.036952 TTCCTGAAGAAGCGCTCTGG 60.037 55.000 12.06 12.26 33.37 3.86
1446 1636 1.074752 GTTCCTGAAGAAGCGCTCTG 58.925 55.000 12.06 1.88 34.29 3.35
1460 1650 1.994507 CTGATCGTCGCGAGGTTCCT 61.995 60.000 27.55 13.89 39.91 3.36
1464 1654 3.440415 TGCTGATCGTCGCGAGGT 61.440 61.111 26.11 14.83 39.91 3.85
1483 1673 0.243907 GACTGAGAGCACGCCAAGTA 59.756 55.000 0.00 0.00 0.00 2.24
1574 1808 6.244999 GTGAAAAACCAAAACATCGGAAAAC 58.755 36.000 0.00 0.00 0.00 2.43
1766 2374 1.378762 CTCTTGCGGAAGGGGGAAA 59.621 57.895 17.16 0.00 0.00 3.13
1771 2379 2.747855 GTGCCTCTTGCGGAAGGG 60.748 66.667 17.16 13.76 45.60 3.95
1772 2380 3.121030 CGTGCCTCTTGCGGAAGG 61.121 66.667 17.16 3.26 45.60 3.46
1970 5611 1.338973 AGCAAAACCGTGACTCTCGTA 59.661 47.619 0.24 0.00 0.00 3.43
2216 6135 7.947890 TCAAAACTAGATCCCATGTAGGTTTTT 59.052 33.333 0.00 0.00 41.56 1.94
2253 6178 0.682852 TTCACCGTTGGATTCCTCGT 59.317 50.000 15.51 1.12 0.00 4.18
2391 6331 6.350277 CCGAAATCACTAGTTGAGGAGTACTT 60.350 42.308 0.00 0.00 37.77 2.24
2393 6333 5.341617 CCGAAATCACTAGTTGAGGAGTAC 58.658 45.833 0.00 0.00 37.77 2.73
2404 6344 3.458189 CCTGGTTAGCCGAAATCACTAG 58.542 50.000 0.00 0.00 37.67 2.57
2434 6376 6.173339 TCTTGGGTTAAAAATGCAACACAAA 58.827 32.000 3.45 0.00 44.90 2.83
2457 6399 5.959527 CACACGATACACTGCATTGTTATTC 59.040 40.000 15.41 9.16 0.00 1.75
2466 6408 4.991687 TCAAATAACACACGATACACTGCA 59.008 37.500 0.00 0.00 0.00 4.41
2468 6410 8.407457 AGTATCAAATAACACACGATACACTG 57.593 34.615 9.72 0.00 40.46 3.66
2665 7771 5.275067 TGCAAAAAGGCTCAACTGTTTAT 57.725 34.783 0.00 0.00 34.04 1.40
2672 7778 1.868469 TGCATGCAAAAAGGCTCAAC 58.132 45.000 20.30 0.00 34.04 3.18
2801 7907 4.744795 ACCAAAACAAAAGGCATGTACA 57.255 36.364 0.00 0.00 0.00 2.90
2831 7937 6.840780 ACCCTTAGAAATCTTGACAATTGG 57.159 37.500 10.83 0.00 0.00 3.16
2869 7975 8.859156 CATCTTGTTCAAAAAGAAAGAAAACGA 58.141 29.630 0.00 0.00 38.13 3.85
2870 7976 7.632132 GCATCTTGTTCAAAAAGAAAGAAAACG 59.368 33.333 0.00 0.00 38.13 3.60
2936 8056 4.142708 CCATATGAAGCGTTGTTACAAGCA 60.143 41.667 17.00 5.19 0.00 3.91
2940 8060 4.827692 AGACCATATGAAGCGTTGTTACA 58.172 39.130 3.65 0.00 0.00 2.41
2941 8061 6.564125 GCATAGACCATATGAAGCGTTGTTAC 60.564 42.308 3.65 0.00 0.00 2.50
3032 8163 4.224370 TCAACCTCATACCCCAAGTACTTC 59.776 45.833 4.77 0.00 32.46 3.01
3047 8178 1.372499 GCGCACGTACTCAACCTCA 60.372 57.895 0.30 0.00 0.00 3.86
3128 8259 8.985922 AGTTCCTATTATTTTACTCGGTACCTT 58.014 33.333 10.90 0.00 0.00 3.50
3129 8260 8.419442 CAGTTCCTATTATTTTACTCGGTACCT 58.581 37.037 10.90 0.00 0.00 3.08
3130 8261 8.200120 ACAGTTCCTATTATTTTACTCGGTACC 58.800 37.037 0.16 0.16 0.00 3.34
3133 8264 7.618137 ACACAGTTCCTATTATTTTACTCGGT 58.382 34.615 0.00 0.00 0.00 4.69
3134 8265 9.590451 TTACACAGTTCCTATTATTTTACTCGG 57.410 33.333 0.00 0.00 0.00 4.63
3149 8280 6.989759 ACCAAAATTTTCCATTACACAGTTCC 59.010 34.615 0.00 0.00 0.00 3.62
3157 8288 7.659390 TCCAACATGACCAAAATTTTCCATTAC 59.341 33.333 0.00 0.00 0.00 1.89
3167 8298 4.383335 GCATCCATCCAACATGACCAAAAT 60.383 41.667 0.00 0.00 0.00 1.82
3220 8351 7.602265 CAGGAATTCCTAGAGAATAAGCTAAGC 59.398 40.741 26.61 0.00 46.65 3.09
3229 8360 7.741554 AACAGTACAGGAATTCCTAGAGAAT 57.258 36.000 26.61 8.93 46.65 2.40
3263 8394 7.309770 ACAGGGAATTAGGCAAATACAAAAA 57.690 32.000 0.00 0.00 0.00 1.94
3264 8395 6.926630 ACAGGGAATTAGGCAAATACAAAA 57.073 33.333 0.00 0.00 0.00 2.44
3358 8510 9.981114 CAGAAGTTAGTTCAAAACCCATTAAAT 57.019 29.630 2.45 0.00 37.67 1.40
3371 8523 9.457436 GGGTAATTTAATCCAGAAGTTAGTTCA 57.543 33.333 2.45 0.00 37.67 3.18
3372 8524 9.457436 TGGGTAATTTAATCCAGAAGTTAGTTC 57.543 33.333 0.00 0.00 35.08 3.01
3421 8573 9.186837 AGTGAGATGCATTTCAGAAGATAATTT 57.813 29.630 19.47 0.00 0.00 1.82
3424 8576 7.333323 TCAGTGAGATGCATTTCAGAAGATAA 58.667 34.615 19.47 0.29 0.00 1.75
3428 8580 5.874895 TTCAGTGAGATGCATTTCAGAAG 57.125 39.130 19.47 12.31 0.00 2.85
3453 8605 4.142182 ACGCACCCAAGATATTGAAAATGG 60.142 41.667 0.54 0.00 0.00 3.16
3483 8637 5.105023 AGCAGCTCAGAATTTGACTATCTCA 60.105 40.000 0.00 0.00 0.00 3.27
3514 8668 3.372060 CTCGTCTAATAATCTGCGCACA 58.628 45.455 5.66 0.00 0.00 4.57
3516 8670 2.223711 TGCTCGTCTAATAATCTGCGCA 60.224 45.455 10.98 10.98 0.00 6.09
3517 8671 2.394708 TGCTCGTCTAATAATCTGCGC 58.605 47.619 0.00 0.00 0.00 6.09
3518 8672 5.175673 TCATTTGCTCGTCTAATAATCTGCG 59.824 40.000 0.00 0.00 0.00 5.18
3718 8880 7.425224 TTTTCTTTTCCCTTATTGTGGTTGA 57.575 32.000 0.00 0.00 0.00 3.18
3723 8885 8.675705 ATTGGTTTTTCTTTTCCCTTATTGTG 57.324 30.769 0.00 0.00 0.00 3.33
3777 8939 2.289444 CGGAATGGGTGACAAGTACAGT 60.289 50.000 0.00 0.00 0.00 3.55
3782 8944 0.762418 TCACGGAATGGGTGACAAGT 59.238 50.000 0.00 0.00 39.36 3.16
3798 8960 4.510038 ACTGCTGATGGTTTGATTTCAC 57.490 40.909 0.00 0.00 0.00 3.18
3846 9008 3.025978 CAGCTTGGATTTTATGCCCTCA 58.974 45.455 0.00 0.00 0.00 3.86
3861 9023 7.254852 TGAAACCAGTAAAAGTAAACAGCTTG 58.745 34.615 0.00 0.00 0.00 4.01
3879 9041 7.125507 AGCCAAATGGTATGAATTATGAAACCA 59.874 33.333 0.71 0.00 40.99 3.67
3884 9046 7.341512 TGTGAAGCCAAATGGTATGAATTATGA 59.658 33.333 0.71 0.00 37.57 2.15
4061 9224 0.532862 CAACAGCAACTCGTGACCCT 60.533 55.000 0.00 0.00 0.00 4.34
4079 9242 3.374988 CAGGATTGCGCTTTCTTGTATCA 59.625 43.478 9.73 0.00 0.00 2.15
4106 9269 4.888326 AAGCACCTTCCATAATGCAAAA 57.112 36.364 0.00 0.00 40.63 2.44
4196 9362 6.909357 CAGACTGAACAGAAAATGTGAAGAAC 59.091 38.462 8.87 0.00 43.00 3.01
4349 9526 6.456584 CGTTCTCATGATGTGGAAAGATCAAG 60.457 42.308 0.00 0.00 32.43 3.02
4509 9686 5.792741 ACTGACAGAAAAGGAGAGATTCAG 58.207 41.667 10.08 0.00 35.21 3.02
4541 9828 4.666237 GCCTCAGCTACAAACAAATGATC 58.334 43.478 0.00 0.00 35.50 2.92
4726 10036 2.521547 AAAAGGAGGGAGCATCTTGG 57.478 50.000 0.00 0.00 33.73 3.61
4729 10039 4.302067 TCAGATAAAAGGAGGGAGCATCT 58.698 43.478 0.00 0.00 33.73 2.90
4749 10059 8.940952 CACGACAGTTCAGATCTATATATCTCA 58.059 37.037 0.00 0.00 33.87 3.27
4753 10063 8.851145 ACAACACGACAGTTCAGATCTATATAT 58.149 33.333 0.00 0.00 0.00 0.86
4763 10073 4.750098 AGGAATTACAACACGACAGTTCAG 59.250 41.667 0.00 0.00 0.00 3.02
4844 10156 2.271800 GGACGTCCAACTCATCATCAC 58.728 52.381 29.75 0.00 35.64 3.06
4944 10256 1.377725 CTCATCAAGGGCGCCTGTT 60.378 57.895 28.56 17.60 32.13 3.16
4965 10277 1.817357 TTGCTCTCACTGGCTTCATG 58.183 50.000 0.00 0.00 0.00 3.07
5025 10337 2.224079 TCATCGACTGCAAAACTCAAGC 59.776 45.455 0.00 0.00 0.00 4.01
5041 10353 3.818961 AGCACAGTTCAATGTTCATCG 57.181 42.857 0.00 0.00 0.00 3.84
5244 10573 2.860971 AAGCACTGGGAAGGGGCT 60.861 61.111 0.00 0.00 36.13 5.19
5245 10574 2.361737 GAAGCACTGGGAAGGGGC 60.362 66.667 0.00 0.00 0.00 5.80
5246 10575 0.610232 CTTGAAGCACTGGGAAGGGG 60.610 60.000 0.00 0.00 0.00 4.79
5247 10576 0.610232 CCTTGAAGCACTGGGAAGGG 60.610 60.000 0.00 0.00 31.24 3.95
5248 10577 0.111253 ACCTTGAAGCACTGGGAAGG 59.889 55.000 0.00 0.00 39.35 3.46
5249 10578 1.242076 CACCTTGAAGCACTGGGAAG 58.758 55.000 0.00 0.00 0.00 3.46
5250 10579 0.550914 ACACCTTGAAGCACTGGGAA 59.449 50.000 0.00 0.00 0.00 3.97
5251 10580 1.071699 GTACACCTTGAAGCACTGGGA 59.928 52.381 0.00 0.00 0.00 4.37
5252 10581 1.202758 TGTACACCTTGAAGCACTGGG 60.203 52.381 0.00 0.00 0.00 4.45
5253 10582 2.146342 CTGTACACCTTGAAGCACTGG 58.854 52.381 0.00 0.00 0.00 4.00
5254 10583 2.146342 CCTGTACACCTTGAAGCACTG 58.854 52.381 0.00 0.00 0.00 3.66
5255 10584 1.768870 ACCTGTACACCTTGAAGCACT 59.231 47.619 0.00 0.00 0.00 4.40
5256 10585 1.873591 CACCTGTACACCTTGAAGCAC 59.126 52.381 0.00 0.00 0.00 4.40
5257 10586 1.488812 ACACCTGTACACCTTGAAGCA 59.511 47.619 0.00 0.00 0.00 3.91
5258 10587 2.256117 ACACCTGTACACCTTGAAGC 57.744 50.000 0.00 0.00 0.00 3.86
5259 10588 4.755123 CCTTAACACCTGTACACCTTGAAG 59.245 45.833 0.00 0.00 0.00 3.02
5260 10589 4.445162 CCCTTAACACCTGTACACCTTGAA 60.445 45.833 0.00 0.00 0.00 2.69
5261 10590 3.071892 CCCTTAACACCTGTACACCTTGA 59.928 47.826 0.00 0.00 0.00 3.02
5262 10591 3.408634 CCCTTAACACCTGTACACCTTG 58.591 50.000 0.00 0.00 0.00 3.61
5263 10592 2.224695 GCCCTTAACACCTGTACACCTT 60.225 50.000 0.00 0.00 0.00 3.50
5264 10593 1.350019 GCCCTTAACACCTGTACACCT 59.650 52.381 0.00 0.00 0.00 4.00
5265 10594 1.817357 GCCCTTAACACCTGTACACC 58.183 55.000 0.00 0.00 0.00 4.16
5266 10595 1.435577 CGCCCTTAACACCTGTACAC 58.564 55.000 0.00 0.00 0.00 2.90
5267 10596 0.320946 GCGCCCTTAACACCTGTACA 60.321 55.000 0.00 0.00 0.00 2.90
5268 10597 1.022982 GGCGCCCTTAACACCTGTAC 61.023 60.000 18.11 0.00 0.00 2.90
5269 10598 1.297364 GGCGCCCTTAACACCTGTA 59.703 57.895 18.11 0.00 0.00 2.74
5270 10599 2.033602 GGCGCCCTTAACACCTGT 59.966 61.111 18.11 0.00 0.00 4.00
5271 10600 2.033448 TGGCGCCCTTAACACCTG 59.967 61.111 26.77 0.00 0.00 4.00
5272 10601 2.033602 GTGGCGCCCTTAACACCT 59.966 61.111 26.77 0.00 0.00 4.00
5273 10602 0.393267 TATGTGGCGCCCTTAACACC 60.393 55.000 26.77 1.72 33.07 4.16
5274 10603 1.455248 TTATGTGGCGCCCTTAACAC 58.545 50.000 26.77 15.11 0.00 3.32
5275 10604 1.813786 GTTTATGTGGCGCCCTTAACA 59.186 47.619 26.77 22.05 0.00 2.41
5276 10605 1.813786 TGTTTATGTGGCGCCCTTAAC 59.186 47.619 26.77 19.74 0.00 2.01
5277 10606 2.201921 TGTTTATGTGGCGCCCTTAA 57.798 45.000 26.77 19.18 0.00 1.85
5278 10607 2.201921 TTGTTTATGTGGCGCCCTTA 57.798 45.000 26.77 14.47 0.00 2.69
5279 10608 1.333177 TTTGTTTATGTGGCGCCCTT 58.667 45.000 26.77 15.51 0.00 3.95
5280 10609 1.333177 TTTTGTTTATGTGGCGCCCT 58.667 45.000 26.77 11.49 0.00 5.19
5281 10610 2.156343 TTTTTGTTTATGTGGCGCCC 57.844 45.000 26.77 16.24 0.00 6.13
5298 10627 7.507733 TTAATTGCTTTGCCACATCATTTTT 57.492 28.000 0.00 0.00 0.00 1.94
5299 10628 7.444792 TCTTTAATTGCTTTGCCACATCATTTT 59.555 29.630 0.00 0.00 0.00 1.82
5300 10629 6.935771 TCTTTAATTGCTTTGCCACATCATTT 59.064 30.769 0.00 0.00 0.00 2.32
5301 10630 6.465948 TCTTTAATTGCTTTGCCACATCATT 58.534 32.000 0.00 0.00 0.00 2.57
5302 10631 6.040209 TCTTTAATTGCTTTGCCACATCAT 57.960 33.333 0.00 0.00 0.00 2.45
5303 10632 5.465532 TCTTTAATTGCTTTGCCACATCA 57.534 34.783 0.00 0.00 0.00 3.07
5304 10633 4.866486 CCTCTTTAATTGCTTTGCCACATC 59.134 41.667 0.00 0.00 0.00 3.06
5305 10634 4.527816 TCCTCTTTAATTGCTTTGCCACAT 59.472 37.500 0.00 0.00 0.00 3.21
5306 10635 3.894427 TCCTCTTTAATTGCTTTGCCACA 59.106 39.130 0.00 0.00 0.00 4.17
5307 10636 4.218417 TCTCCTCTTTAATTGCTTTGCCAC 59.782 41.667 0.00 0.00 0.00 5.01
5308 10637 4.406456 TCTCCTCTTTAATTGCTTTGCCA 58.594 39.130 0.00 0.00 0.00 4.92
5309 10638 4.702131 TCTCTCCTCTTTAATTGCTTTGCC 59.298 41.667 0.00 0.00 0.00 4.52
5310 10639 5.163673 CCTCTCTCCTCTTTAATTGCTTTGC 60.164 44.000 0.00 0.00 0.00 3.68
5311 10640 5.356470 CCCTCTCTCCTCTTTAATTGCTTTG 59.644 44.000 0.00 0.00 0.00 2.77
5312 10641 5.504853 CCCTCTCTCCTCTTTAATTGCTTT 58.495 41.667 0.00 0.00 0.00 3.51
5313 10642 4.627498 GCCCTCTCTCCTCTTTAATTGCTT 60.627 45.833 0.00 0.00 0.00 3.91
5314 10643 3.118075 GCCCTCTCTCCTCTTTAATTGCT 60.118 47.826 0.00 0.00 0.00 3.91
5315 10644 3.210227 GCCCTCTCTCCTCTTTAATTGC 58.790 50.000 0.00 0.00 0.00 3.56
5316 10645 4.494091 TGCCCTCTCTCCTCTTTAATTG 57.506 45.455 0.00 0.00 0.00 2.32
5317 10646 5.723860 AATGCCCTCTCTCCTCTTTAATT 57.276 39.130 0.00 0.00 0.00 1.40
5318 10647 6.240118 CCATAATGCCCTCTCTCCTCTTTAAT 60.240 42.308 0.00 0.00 0.00 1.40
5319 10648 5.072329 CCATAATGCCCTCTCTCCTCTTTAA 59.928 44.000 0.00 0.00 0.00 1.52
5320 10649 4.594920 CCATAATGCCCTCTCTCCTCTTTA 59.405 45.833 0.00 0.00 0.00 1.85
5321 10650 3.393941 CCATAATGCCCTCTCTCCTCTTT 59.606 47.826 0.00 0.00 0.00 2.52
5322 10651 2.978278 CCATAATGCCCTCTCTCCTCTT 59.022 50.000 0.00 0.00 0.00 2.85
5323 10652 2.090267 ACCATAATGCCCTCTCTCCTCT 60.090 50.000 0.00 0.00 0.00 3.69
5324 10653 2.038295 CACCATAATGCCCTCTCTCCTC 59.962 54.545 0.00 0.00 0.00 3.71
5325 10654 2.053244 CACCATAATGCCCTCTCTCCT 58.947 52.381 0.00 0.00 0.00 3.69
5326 10655 2.050144 TCACCATAATGCCCTCTCTCC 58.950 52.381 0.00 0.00 0.00 3.71
5327 10656 2.224402 GGTCACCATAATGCCCTCTCTC 60.224 54.545 0.00 0.00 0.00 3.20
5328 10657 1.771255 GGTCACCATAATGCCCTCTCT 59.229 52.381 0.00 0.00 0.00 3.10
5329 10658 1.490490 TGGTCACCATAATGCCCTCTC 59.510 52.381 0.00 0.00 0.00 3.20
5330 10659 1.212935 GTGGTCACCATAATGCCCTCT 59.787 52.381 0.00 0.00 35.28 3.69
5331 10660 1.064758 TGTGGTCACCATAATGCCCTC 60.065 52.381 0.00 0.00 35.28 4.30
5332 10661 0.998928 TGTGGTCACCATAATGCCCT 59.001 50.000 0.00 0.00 35.28 5.19
5333 10662 1.392589 CTGTGGTCACCATAATGCCC 58.607 55.000 0.00 0.00 35.28 5.36
5334 10663 1.064758 TCCTGTGGTCACCATAATGCC 60.065 52.381 0.00 0.00 35.28 4.40
5335 10664 2.418368 TCCTGTGGTCACCATAATGC 57.582 50.000 0.00 0.00 35.28 3.56
5336 10665 4.220693 TCTTCCTGTGGTCACCATAATG 57.779 45.455 0.00 0.00 35.28 1.90
5337 10666 4.927267 TTCTTCCTGTGGTCACCATAAT 57.073 40.909 0.00 0.00 35.28 1.28
5338 10667 4.394729 GTTTCTTCCTGTGGTCACCATAA 58.605 43.478 0.00 0.00 35.28 1.90
5339 10668 3.556213 CGTTTCTTCCTGTGGTCACCATA 60.556 47.826 0.00 0.00 35.28 2.74
5340 10669 2.810400 CGTTTCTTCCTGTGGTCACCAT 60.810 50.000 0.00 0.00 35.28 3.55
5341 10670 1.474320 CGTTTCTTCCTGTGGTCACCA 60.474 52.381 0.00 0.00 0.00 4.17
5342 10671 1.226746 CGTTTCTTCCTGTGGTCACC 58.773 55.000 0.00 0.00 0.00 4.02
5343 10672 1.226746 CCGTTTCTTCCTGTGGTCAC 58.773 55.000 0.00 0.00 0.00 3.67
5344 10673 0.834612 ACCGTTTCTTCCTGTGGTCA 59.165 50.000 0.00 0.00 0.00 4.02
5345 10674 1.226746 CACCGTTTCTTCCTGTGGTC 58.773 55.000 0.00 0.00 0.00 4.02
5346 10675 0.818040 GCACCGTTTCTTCCTGTGGT 60.818 55.000 0.00 0.00 0.00 4.16
5347 10676 0.535102 AGCACCGTTTCTTCCTGTGG 60.535 55.000 0.00 0.00 0.00 4.17
5348 10677 2.163818 TAGCACCGTTTCTTCCTGTG 57.836 50.000 0.00 0.00 0.00 3.66
5349 10678 2.767505 CTTAGCACCGTTTCTTCCTGT 58.232 47.619 0.00 0.00 0.00 4.00
5350 10679 1.464997 GCTTAGCACCGTTTCTTCCTG 59.535 52.381 0.00 0.00 0.00 3.86
5351 10680 1.071699 TGCTTAGCACCGTTTCTTCCT 59.928 47.619 1.39 0.00 31.71 3.36
5352 10681 1.519408 TGCTTAGCACCGTTTCTTCC 58.481 50.000 1.39 0.00 31.71 3.46
5363 10692 1.672854 ATAGGTCCGCGTGCTTAGCA 61.673 55.000 1.39 1.39 35.60 3.49
5364 10693 1.067582 ATAGGTCCGCGTGCTTAGC 59.932 57.895 4.92 0.00 0.00 3.09
5365 10694 0.102481 ACATAGGTCCGCGTGCTTAG 59.898 55.000 4.92 0.00 0.00 2.18
5366 10695 1.391577 TACATAGGTCCGCGTGCTTA 58.608 50.000 4.92 0.00 0.00 3.09
5367 10696 0.533491 TTACATAGGTCCGCGTGCTT 59.467 50.000 4.92 0.00 0.00 3.91
5368 10697 0.102481 CTTACATAGGTCCGCGTGCT 59.898 55.000 4.92 0.00 0.00 4.40
5369 10698 0.101759 TCTTACATAGGTCCGCGTGC 59.898 55.000 4.92 0.00 0.00 5.34
5370 10699 2.460918 CTTCTTACATAGGTCCGCGTG 58.539 52.381 4.92 0.00 0.00 5.34
5371 10700 1.407979 CCTTCTTACATAGGTCCGCGT 59.592 52.381 4.92 0.00 0.00 6.01
5372 10701 1.868519 GCCTTCTTACATAGGTCCGCG 60.869 57.143 0.00 0.00 33.91 6.46
5373 10702 1.413077 AGCCTTCTTACATAGGTCCGC 59.587 52.381 0.00 0.00 33.91 5.54
5374 10703 3.005578 GGTAGCCTTCTTACATAGGTCCG 59.994 52.174 0.00 0.00 33.91 4.79
5375 10704 3.965347 TGGTAGCCTTCTTACATAGGTCC 59.035 47.826 0.00 0.00 33.91 4.46
5376 10705 5.358090 GTTGGTAGCCTTCTTACATAGGTC 58.642 45.833 0.00 0.00 33.91 3.85
5377 10706 4.163649 GGTTGGTAGCCTTCTTACATAGGT 59.836 45.833 0.00 0.00 33.91 3.08
5378 10707 4.163458 TGGTTGGTAGCCTTCTTACATAGG 59.837 45.833 0.00 0.00 34.54 2.57
5379 10708 5.353394 TGGTTGGTAGCCTTCTTACATAG 57.647 43.478 0.00 0.00 0.00 2.23
5380 10709 5.765576 TTGGTTGGTAGCCTTCTTACATA 57.234 39.130 0.00 0.00 0.00 2.29
5381 10710 4.650972 TTGGTTGGTAGCCTTCTTACAT 57.349 40.909 0.00 0.00 0.00 2.29
5382 10711 4.650972 ATTGGTTGGTAGCCTTCTTACA 57.349 40.909 0.00 0.00 0.00 2.41
5383 10712 5.493809 TGTATTGGTTGGTAGCCTTCTTAC 58.506 41.667 0.00 0.00 0.00 2.34
5384 10713 5.765576 TGTATTGGTTGGTAGCCTTCTTA 57.234 39.130 0.00 0.00 0.00 2.10
5385 10714 4.650972 TGTATTGGTTGGTAGCCTTCTT 57.349 40.909 0.00 0.00 0.00 2.52
5386 10715 4.227300 TCATGTATTGGTTGGTAGCCTTCT 59.773 41.667 0.00 0.00 0.00 2.85
5387 10716 4.523083 TCATGTATTGGTTGGTAGCCTTC 58.477 43.478 0.00 0.00 0.00 3.46
5388 10717 4.227300 TCTCATGTATTGGTTGGTAGCCTT 59.773 41.667 0.00 0.00 0.00 4.35
5389 10718 3.780294 TCTCATGTATTGGTTGGTAGCCT 59.220 43.478 0.00 0.00 0.00 4.58
5390 10719 4.130118 CTCTCATGTATTGGTTGGTAGCC 58.870 47.826 0.00 0.00 0.00 3.93
5391 10720 5.023533 TCTCTCATGTATTGGTTGGTAGC 57.976 43.478 0.00 0.00 0.00 3.58
5392 10721 6.227298 ACTCTCTCATGTATTGGTTGGTAG 57.773 41.667 0.00 0.00 0.00 3.18
5393 10722 6.620877 AACTCTCTCATGTATTGGTTGGTA 57.379 37.500 0.00 0.00 0.00 3.25
5394 10723 5.505181 AACTCTCTCATGTATTGGTTGGT 57.495 39.130 0.00 0.00 0.00 3.67
5395 10724 7.921786 TTAAACTCTCTCATGTATTGGTTGG 57.078 36.000 0.00 0.00 0.00 3.77
5432 10761 0.685097 AGCTAAGCTTTCCACGTGGA 59.315 50.000 33.23 33.23 43.73 4.02
5433 10762 2.000447 GTAGCTAAGCTTTCCACGTGG 59.000 52.381 29.26 29.26 40.44 4.94
5434 10763 2.000447 GGTAGCTAAGCTTTCCACGTG 59.000 52.381 9.08 9.08 40.44 4.49
5435 10764 1.066358 GGGTAGCTAAGCTTTCCACGT 60.066 52.381 3.20 0.00 40.44 4.49
5436 10765 1.066430 TGGGTAGCTAAGCTTTCCACG 60.066 52.381 3.20 0.00 40.44 4.94
5437 10766 2.781681 TGGGTAGCTAAGCTTTCCAC 57.218 50.000 3.20 0.00 40.44 4.02
5438 10767 2.618045 GCTTGGGTAGCTAAGCTTTCCA 60.618 50.000 29.12 4.52 46.77 3.53
5439 10768 2.017782 GCTTGGGTAGCTAAGCTTTCC 58.982 52.381 29.12 6.35 46.77 3.13
5450 10779 1.195115 TAGGTGCTGAGCTTGGGTAG 58.805 55.000 5.83 0.00 0.00 3.18
5451 10780 1.486310 CATAGGTGCTGAGCTTGGGTA 59.514 52.381 5.83 0.00 0.00 3.69
5452 10781 0.254178 CATAGGTGCTGAGCTTGGGT 59.746 55.000 5.83 0.00 0.00 4.51
5453 10782 3.091318 CATAGGTGCTGAGCTTGGG 57.909 57.895 5.83 0.00 0.00 4.12
5464 10793 1.492176 AGTCTCCCCAATGCATAGGTG 59.508 52.381 13.23 9.58 0.00 4.00
5465 10794 1.898863 AGTCTCCCCAATGCATAGGT 58.101 50.000 13.23 0.00 0.00 3.08
5466 10795 2.975489 ACTAGTCTCCCCAATGCATAGG 59.025 50.000 0.00 3.90 0.00 2.57
5467 10796 4.384056 CAACTAGTCTCCCCAATGCATAG 58.616 47.826 0.00 0.00 0.00 2.23
5468 10797 3.433598 GCAACTAGTCTCCCCAATGCATA 60.434 47.826 0.00 0.00 33.00 3.14
5469 10798 2.684927 GCAACTAGTCTCCCCAATGCAT 60.685 50.000 0.00 0.00 33.00 3.96
5470 10799 1.340017 GCAACTAGTCTCCCCAATGCA 60.340 52.381 0.00 0.00 33.00 3.96
5471 10800 1.065126 AGCAACTAGTCTCCCCAATGC 60.065 52.381 0.00 0.00 0.00 3.56
5472 10801 4.162320 TCTTAGCAACTAGTCTCCCCAATG 59.838 45.833 0.00 0.00 0.00 2.82
5473 10802 4.362677 TCTTAGCAACTAGTCTCCCCAAT 58.637 43.478 0.00 0.00 0.00 3.16
5474 10803 3.786553 TCTTAGCAACTAGTCTCCCCAA 58.213 45.455 0.00 0.00 0.00 4.12
5475 10804 3.468071 TCTTAGCAACTAGTCTCCCCA 57.532 47.619 0.00 0.00 0.00 4.96
5476 10805 5.360649 AAATCTTAGCAACTAGTCTCCCC 57.639 43.478 0.00 0.00 0.00 4.81
5477 10806 8.788325 TTTAAAATCTTAGCAACTAGTCTCCC 57.212 34.615 0.00 0.00 0.00 4.30
5485 10814 9.626045 GCTTGTACATTTAAAATCTTAGCAACT 57.374 29.630 0.00 0.00 0.00 3.16
5486 10815 9.626045 AGCTTGTACATTTAAAATCTTAGCAAC 57.374 29.630 9.64 0.00 0.00 4.17
5487 10816 9.840427 GAGCTTGTACATTTAAAATCTTAGCAA 57.160 29.630 9.64 0.00 0.00 3.91
5488 10817 9.231297 AGAGCTTGTACATTTAAAATCTTAGCA 57.769 29.630 9.64 0.00 0.00 3.49
5489 10818 9.495754 CAGAGCTTGTACATTTAAAATCTTAGC 57.504 33.333 0.00 0.00 0.00 3.09
5490 10819 9.994432 CCAGAGCTTGTACATTTAAAATCTTAG 57.006 33.333 0.00 0.00 0.00 2.18
5491 10820 9.515226 ACCAGAGCTTGTACATTTAAAATCTTA 57.485 29.630 0.00 0.00 0.00 2.10
5492 10821 8.409358 ACCAGAGCTTGTACATTTAAAATCTT 57.591 30.769 0.00 0.00 0.00 2.40
5493 10822 8.299570 CAACCAGAGCTTGTACATTTAAAATCT 58.700 33.333 0.00 0.00 0.00 2.40
5494 10823 7.062255 GCAACCAGAGCTTGTACATTTAAAATC 59.938 37.037 0.00 0.00 0.00 2.17
5495 10824 6.868339 GCAACCAGAGCTTGTACATTTAAAAT 59.132 34.615 0.00 0.00 0.00 1.82
5496 10825 6.212955 GCAACCAGAGCTTGTACATTTAAAA 58.787 36.000 0.00 0.00 0.00 1.52
5497 10826 5.278758 GGCAACCAGAGCTTGTACATTTAAA 60.279 40.000 0.00 0.00 0.00 1.52
5498 10827 4.217550 GGCAACCAGAGCTTGTACATTTAA 59.782 41.667 0.00 0.00 0.00 1.52
5499 10828 3.756434 GGCAACCAGAGCTTGTACATTTA 59.244 43.478 0.00 0.00 0.00 1.40
5500 10829 2.558359 GGCAACCAGAGCTTGTACATTT 59.442 45.455 0.00 0.00 0.00 2.32
5501 10830 2.162681 GGCAACCAGAGCTTGTACATT 58.837 47.619 0.00 0.00 0.00 2.71
5542 10871 5.947228 TCAAGCCAAGAATAGACAGTTTG 57.053 39.130 0.00 0.00 0.00 2.93
5745 11075 0.588252 ATTGCTGCGTGTGTCTGTTC 59.412 50.000 0.00 0.00 0.00 3.18
6050 11382 1.028868 GGTGCTCTGGAGTTGCATCC 61.029 60.000 0.00 0.00 39.00 3.51
6211 11771 0.111832 ACCGAGGACACAGTCACCTA 59.888 55.000 0.00 0.00 33.68 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.