Multiple sequence alignment - TraesCS1D01G143800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G143800 chr1D 100.000 3103 0 0 2521 5623 199363113 199366215 0.000000e+00 5731.0
1 TraesCS1D01G143800 chr1D 100.000 2168 0 0 1 2168 199360593 199362760 0.000000e+00 4004.0
2 TraesCS1D01G143800 chr1D 79.681 251 47 4 137 385 491407872 491407624 1.610000e-40 178.0
3 TraesCS1D01G143800 chr1D 96.970 66 2 0 4103 4168 199364631 199364696 1.660000e-20 111.0
4 TraesCS1D01G143800 chr1D 96.970 66 2 0 4039 4104 199364695 199364760 1.660000e-20 111.0
5 TraesCS1D01G143800 chr1A 96.281 1452 41 6 2521 3961 250551966 250553415 0.000000e+00 2370.0
6 TraesCS1D01G143800 chr1A 94.972 1233 29 9 302 1505 250550162 250551390 0.000000e+00 1903.0
7 TraesCS1D01G143800 chr1A 98.433 638 9 1 4007 4643 250553419 250554056 0.000000e+00 1122.0
8 TraesCS1D01G143800 chr1A 92.823 627 33 9 4817 5435 250554052 250554674 0.000000e+00 898.0
9 TraesCS1D01G143800 chr1A 94.771 306 16 0 1 306 250549077 250549382 1.420000e-130 477.0
10 TraesCS1D01G143800 chr1A 87.470 423 13 13 1532 1952 250551391 250551775 8.590000e-123 451.0
11 TraesCS1D01G143800 chr1A 91.071 168 4 3 2003 2168 250551772 250551930 3.410000e-52 217.0
12 TraesCS1D01G143800 chr1A 98.485 66 1 0 4039 4104 250553515 250553580 3.560000e-22 117.0
13 TraesCS1D01G143800 chr1A 95.455 66 3 0 4103 4168 250553451 250553516 7.700000e-19 106.0
14 TraesCS1D01G143800 chr1A 86.792 53 5 2 1504 1554 267797097 267797045 2.190000e-04 58.4
15 TraesCS1D01G143800 chr1B 94.558 1470 48 10 2521 3961 279774614 279776080 0.000000e+00 2242.0
16 TraesCS1D01G143800 chr1B 95.293 1041 36 4 477 1504 279772969 279774009 0.000000e+00 1639.0
17 TraesCS1D01G143800 chr1B 93.931 758 33 7 4870 5616 279776763 279777518 0.000000e+00 1133.0
18 TraesCS1D01G143800 chr1B 97.786 542 11 1 4103 4643 279776116 279776657 0.000000e+00 933.0
19 TraesCS1D01G143800 chr1B 84.722 432 36 15 1530 1949 279774006 279774419 6.780000e-109 405.0
20 TraesCS1D01G143800 chr1B 90.909 165 5 2 2006 2168 279774422 279774578 4.410000e-51 213.0
21 TraesCS1D01G143800 chr1B 80.800 250 42 5 141 385 37688872 37688624 2.070000e-44 191.0
22 TraesCS1D01G143800 chr1B 97.980 99 2 0 4006 4104 279776083 279776181 7.490000e-39 172.0
23 TraesCS1D01G143800 chr1B 98.246 57 1 0 1953 2009 175413139 175413083 3.580000e-17 100.0
24 TraesCS1D01G143800 chr1B 100.000 54 0 0 4817 4870 279776653 279776706 3.580000e-17 100.0
25 TraesCS1D01G143800 chr7D 93.158 190 5 1 4640 4821 412100509 412100698 7.180000e-69 272.0
26 TraesCS1D01G143800 chr7D 91.837 196 8 1 4637 4824 433896374 433896569 3.340000e-67 267.0
27 TraesCS1D01G143800 chr7D 96.226 106 4 0 4715 4820 296502597 296502702 2.080000e-39 174.0
28 TraesCS1D01G143800 chr3A 85.496 262 34 4 141 399 91026755 91026495 2.580000e-68 270.0
29 TraesCS1D01G143800 chr3A 96.610 59 1 1 1953 2011 124928327 124928384 4.640000e-16 97.1
30 TraesCS1D01G143800 chr3D 91.579 190 6 3 4644 4825 25460479 25460292 2.600000e-63 254.0
31 TraesCS1D01G143800 chr2B 89.706 204 10 4 4641 4836 70184443 70184243 3.360000e-62 250.0
32 TraesCS1D01G143800 chr2B 88.725 204 13 3 4641 4836 69788343 69788142 2.020000e-59 241.0
33 TraesCS1D01G143800 chr4B 89.950 199 8 5 4646 4836 26626934 26626740 4.350000e-61 246.0
34 TraesCS1D01G143800 chr5D 91.160 181 12 2 4640 4820 423336991 423336815 5.630000e-60 243.0
35 TraesCS1D01G143800 chr5D 79.924 264 42 7 143 403 231362253 231362508 3.460000e-42 183.0
36 TraesCS1D01G143800 chr5D 93.182 44 1 2 1504 1545 330709214 330709171 4.700000e-06 63.9
37 TraesCS1D01G143800 chr5A 90.761 184 10 5 4642 4818 36013230 36013413 7.280000e-59 239.0
38 TraesCS1D01G143800 chr5A 81.784 269 43 5 140 403 115095122 115095389 2.640000e-53 220.0
39 TraesCS1D01G143800 chr2D 90.503 179 11 1 4645 4817 440320517 440320339 1.220000e-56 231.0
40 TraesCS1D01G143800 chr5B 82.463 268 42 4 140 403 121249499 121249765 4.380000e-56 230.0
41 TraesCS1D01G143800 chr5B 98.246 57 1 0 1951 2007 181486638 181486582 3.580000e-17 100.0
42 TraesCS1D01G143800 chr5B 96.364 55 2 0 1953 2007 11085779 11085725 2.160000e-14 91.6
43 TraesCS1D01G143800 chr5B 94.737 57 3 0 1951 2007 690316709 690316765 7.760000e-14 89.8
44 TraesCS1D01G143800 chr5B 93.023 43 2 1 1504 1546 439652102 439652061 1.690000e-05 62.1
45 TraesCS1D01G143800 chr6D 81.985 272 40 6 142 406 446549550 446549281 7.330000e-54 222.0
46 TraesCS1D01G143800 chr6D 98.113 53 1 0 1953 2005 34007323 34007271 6.000000e-15 93.5
47 TraesCS1D01G143800 chr6D 92.857 42 1 2 1497 1538 26814946 26814985 6.080000e-05 60.2
48 TraesCS1D01G143800 chr6D 92.857 42 1 2 1497 1538 26858694 26858733 6.080000e-05 60.2
49 TraesCS1D01G143800 chr6D 92.857 42 1 2 1497 1538 26895034 26895073 6.080000e-05 60.2
50 TraesCS1D01G143800 chr6A 80.321 249 41 6 157 400 60159614 60159859 1.240000e-41 182.0
51 TraesCS1D01G143800 chr6A 100.000 54 0 0 1954 2007 573134099 573134152 3.580000e-17 100.0
52 TraesCS1D01G143800 chr6A 96.491 57 2 0 1951 2007 602816787 602816731 1.670000e-15 95.3
53 TraesCS1D01G143800 chr3B 98.246 57 1 0 1951 2007 82630873 82630929 3.580000e-17 100.0
54 TraesCS1D01G143800 chr2A 92.857 42 3 0 1504 1545 96074965 96075006 1.690000e-05 62.1
55 TraesCS1D01G143800 chr6B 92.857 42 1 2 1497 1538 49236872 49236911 6.080000e-05 60.2
56 TraesCS1D01G143800 chr6B 92.857 42 1 2 1497 1538 49553336 49553297 6.080000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G143800 chr1D 199360593 199366215 5622 False 2489.250000 5731 98.485000 1 5623 4 chr1D.!!$F1 5622
1 TraesCS1D01G143800 chr1A 250549077 250554674 5597 False 851.222222 2370 94.417889 1 5435 9 chr1A.!!$F1 5434
2 TraesCS1D01G143800 chr1B 279772969 279777518 4549 False 854.625000 2242 94.397375 477 5616 8 chr1B.!!$F1 5139

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 1527 0.526211 TCTCCACAGATCGACAACGG 59.474 55.0 0.0 0.0 40.21 4.44 F
1966 2816 1.045911 GCCAGGGAACGAGATCCTCT 61.046 60.0 0.0 0.0 39.57 3.69 F
3810 4692 0.321298 TCTTAGCTTCCAACCGCACC 60.321 55.0 0.0 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2046 2896 0.039074 ACTTGAGACTCGAAGCACCG 60.039 55.0 12.02 0.0 0.0 4.94 R
3961 4843 0.178929 ATAGGGGCGGAGGGTCTAAG 60.179 60.0 0.00 0.0 0.0 2.18 R
4644 5527 0.114364 ATCCCTGGAACCAAACACCC 59.886 55.0 0.00 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.138365 TCAGTGTTGTTTGTTACTCATTAGAC 57.862 34.615 0.00 0.00 0.00 2.59
62 63 0.586802 GTGGTTCGCTTTGAGGTGTC 59.413 55.000 0.00 0.00 0.00 3.67
127 128 0.609151 TTTGGTAATCCACTCGGCGA 59.391 50.000 10.14 10.14 44.22 5.54
139 140 5.607477 TCCACTCGGCGAATTTATTCTAAT 58.393 37.500 12.13 0.00 34.69 1.73
150 151 9.315525 GCGAATTTATTCTAATATACTCCCTCC 57.684 37.037 0.00 0.00 34.69 4.30
166 167 2.404215 CCTCCGTTCCATAATGTAGCG 58.596 52.381 0.00 0.00 0.00 4.26
170 171 5.106038 CCTCCGTTCCATAATGTAGCGTATA 60.106 44.000 0.00 0.00 0.00 1.47
209 210 7.873739 GTCAAACCTCATAAATTTTGACCAG 57.126 36.000 12.84 0.00 46.37 4.00
210 211 6.366061 GTCAAACCTCATAAATTTTGACCAGC 59.634 38.462 12.84 0.00 46.37 4.85
463 1252 3.132467 GGGGTACGATAAAAGAGCTCTGT 59.868 47.826 19.06 9.37 0.00 3.41
488 1277 1.061905 AGCCCGAATGGATCCATGGA 61.062 55.000 27.97 18.88 36.68 3.41
524 1313 5.803552 AGCATTTCTAGAAGCTGAAGAAGT 58.196 37.500 16.17 0.00 35.72 3.01
591 1388 1.405661 CCCTGACTTCCGAGTTAAGCC 60.406 57.143 0.00 0.00 35.88 4.35
686 1490 0.869730 TTGCGAGTTAAGGTTTCCGC 59.130 50.000 0.00 0.00 42.52 5.54
723 1527 0.526211 TCTCCACAGATCGACAACGG 59.474 55.000 0.00 0.00 40.21 4.44
809 1613 3.360340 GCACCAGCCACTGACTGC 61.360 66.667 0.00 0.00 32.44 4.40
1126 1937 3.341629 AGGTGATGGGGCTGGTGG 61.342 66.667 0.00 0.00 0.00 4.61
1392 2208 4.215613 GGGTTTCAGACTTTGTGTGGTATC 59.784 45.833 0.00 0.00 0.00 2.24
1497 2316 4.808558 ACGTTCACATGCTGCAAAAATAT 58.191 34.783 6.36 0.00 0.00 1.28
1505 2324 8.495148 TCACATGCTGCAAAAATATATAGTACG 58.505 33.333 6.36 0.00 0.00 3.67
1506 2325 7.269084 CACATGCTGCAAAAATATATAGTACGC 59.731 37.037 6.36 0.00 0.00 4.42
1507 2326 7.173218 ACATGCTGCAAAAATATATAGTACGCT 59.827 33.333 6.36 0.00 0.00 5.07
1508 2327 7.117241 TGCTGCAAAAATATATAGTACGCTC 57.883 36.000 0.00 0.00 0.00 5.03
1509 2328 6.929049 TGCTGCAAAAATATATAGTACGCTCT 59.071 34.615 0.00 0.00 0.00 4.09
1510 2329 7.441157 TGCTGCAAAAATATATAGTACGCTCTT 59.559 33.333 0.00 0.00 0.00 2.85
1511 2330 8.922676 GCTGCAAAAATATATAGTACGCTCTTA 58.077 33.333 0.00 0.00 0.00 2.10
1526 2345 9.915629 AGTACGCTCTTATATTTCTTTATGGAG 57.084 33.333 0.00 0.00 0.00 3.86
1527 2346 9.141400 GTACGCTCTTATATTTCTTTATGGAGG 57.859 37.037 0.00 0.00 0.00 4.30
1528 2347 7.162082 ACGCTCTTATATTTCTTTATGGAGGG 58.838 38.462 0.00 0.00 35.06 4.30
1539 2358 8.752005 TTTCTTTATGGAGGGAGTATCATTTG 57.248 34.615 0.00 0.00 36.25 2.32
1884 2733 3.257393 TCAAACACAAAAGCATTGCGTT 58.743 36.364 3.87 3.87 0.00 4.84
1885 2734 3.681897 TCAAACACAAAAGCATTGCGTTT 59.318 34.783 15.43 15.43 40.43 3.60
1886 2735 4.864806 TCAAACACAAAAGCATTGCGTTTA 59.135 33.333 19.65 2.90 38.06 2.01
1887 2736 5.005203 TCAAACACAAAAGCATTGCGTTTAG 59.995 36.000 19.65 17.05 38.06 1.85
1888 2737 4.300189 ACACAAAAGCATTGCGTTTAGA 57.700 36.364 19.65 0.00 38.06 2.10
1889 2738 4.677584 ACACAAAAGCATTGCGTTTAGAA 58.322 34.783 19.65 0.00 38.06 2.10
1890 2739 4.502645 ACACAAAAGCATTGCGTTTAGAAC 59.497 37.500 19.65 0.00 38.06 3.01
1891 2740 4.739716 CACAAAAGCATTGCGTTTAGAACT 59.260 37.500 19.65 0.00 38.06 3.01
1952 2802 3.901797 GAGGACCAACGGTGCCAGG 62.902 68.421 0.00 0.00 45.38 4.45
1954 2804 3.948719 GACCAACGGTGCCAGGGA 61.949 66.667 0.00 0.00 35.25 4.20
1955 2805 3.485346 GACCAACGGTGCCAGGGAA 62.485 63.158 0.00 0.00 35.25 3.97
1956 2806 2.983592 CCAACGGTGCCAGGGAAC 60.984 66.667 0.00 0.00 0.00 3.62
1957 2807 3.353836 CAACGGTGCCAGGGAACG 61.354 66.667 18.28 18.28 0.00 3.95
1958 2808 3.552384 AACGGTGCCAGGGAACGA 61.552 61.111 27.24 0.00 0.00 3.85
1959 2809 3.530910 AACGGTGCCAGGGAACGAG 62.531 63.158 27.24 7.37 0.00 4.18
1960 2810 3.691342 CGGTGCCAGGGAACGAGA 61.691 66.667 14.38 0.00 0.00 4.04
1961 2811 2.990479 GGTGCCAGGGAACGAGAT 59.010 61.111 0.00 0.00 0.00 2.75
1962 2812 1.153349 GGTGCCAGGGAACGAGATC 60.153 63.158 0.00 0.00 0.00 2.75
1963 2813 1.153349 GTGCCAGGGAACGAGATCC 60.153 63.158 0.00 0.00 38.86 3.36
1964 2814 1.306141 TGCCAGGGAACGAGATCCT 60.306 57.895 0.00 0.00 39.57 3.24
1965 2815 1.330655 TGCCAGGGAACGAGATCCTC 61.331 60.000 0.00 0.00 39.57 3.71
1966 2816 1.045911 GCCAGGGAACGAGATCCTCT 61.046 60.000 0.00 0.00 39.57 3.69
1967 2817 1.754555 GCCAGGGAACGAGATCCTCTA 60.755 57.143 0.00 0.00 39.57 2.43
1968 2818 2.667470 CCAGGGAACGAGATCCTCTAA 58.333 52.381 0.00 0.00 39.57 2.10
1969 2819 2.362717 CCAGGGAACGAGATCCTCTAAC 59.637 54.545 0.00 0.00 39.57 2.34
1970 2820 3.024547 CAGGGAACGAGATCCTCTAACA 58.975 50.000 0.00 0.00 39.57 2.41
1971 2821 3.639094 CAGGGAACGAGATCCTCTAACAT 59.361 47.826 0.00 0.00 39.57 2.71
1972 2822 3.892588 AGGGAACGAGATCCTCTAACATC 59.107 47.826 0.00 0.00 39.57 3.06
1973 2823 3.637229 GGGAACGAGATCCTCTAACATCA 59.363 47.826 0.00 0.00 39.57 3.07
1974 2824 4.500035 GGGAACGAGATCCTCTAACATCAC 60.500 50.000 0.00 0.00 39.57 3.06
1975 2825 3.972950 ACGAGATCCTCTAACATCACG 57.027 47.619 0.00 0.00 38.56 4.35
1976 2826 3.542648 ACGAGATCCTCTAACATCACGA 58.457 45.455 5.88 0.00 36.82 4.35
1977 2827 3.945921 ACGAGATCCTCTAACATCACGAA 59.054 43.478 5.88 0.00 36.82 3.85
1978 2828 4.035792 ACGAGATCCTCTAACATCACGAAG 59.964 45.833 5.88 0.00 36.82 3.79
1979 2829 4.555708 CGAGATCCTCTAACATCACGAAGG 60.556 50.000 0.00 0.00 35.79 3.46
1980 2830 4.537751 AGATCCTCTAACATCACGAAGGA 58.462 43.478 0.00 0.00 0.00 3.36
1981 2831 4.956700 AGATCCTCTAACATCACGAAGGAA 59.043 41.667 0.00 0.00 0.00 3.36
1982 2832 5.600484 AGATCCTCTAACATCACGAAGGAAT 59.400 40.000 0.00 0.00 0.00 3.01
1983 2833 5.011090 TCCTCTAACATCACGAAGGAATG 57.989 43.478 0.00 0.00 0.00 2.67
1984 2834 4.466370 TCCTCTAACATCACGAAGGAATGT 59.534 41.667 0.00 0.00 0.00 2.71
1985 2835 4.806247 CCTCTAACATCACGAAGGAATGTC 59.194 45.833 0.00 0.00 0.00 3.06
1986 2836 5.400066 TCTAACATCACGAAGGAATGTCA 57.600 39.130 0.00 0.00 0.00 3.58
1987 2837 5.410924 TCTAACATCACGAAGGAATGTCAG 58.589 41.667 0.00 0.00 0.00 3.51
1988 2838 2.977914 ACATCACGAAGGAATGTCAGG 58.022 47.619 0.00 0.00 0.00 3.86
1989 2839 2.283298 CATCACGAAGGAATGTCAGGG 58.717 52.381 0.00 0.00 0.00 4.45
1990 2840 1.639722 TCACGAAGGAATGTCAGGGA 58.360 50.000 0.00 0.00 0.00 4.20
1991 2841 1.974957 TCACGAAGGAATGTCAGGGAA 59.025 47.619 0.00 0.00 0.00 3.97
1992 2842 2.028112 TCACGAAGGAATGTCAGGGAAG 60.028 50.000 0.00 0.00 0.00 3.46
1993 2843 1.339151 ACGAAGGAATGTCAGGGAAGC 60.339 52.381 0.00 0.00 0.00 3.86
1994 2844 1.065854 CGAAGGAATGTCAGGGAAGCT 60.066 52.381 0.00 0.00 0.00 3.74
1995 2845 2.168521 CGAAGGAATGTCAGGGAAGCTA 59.831 50.000 0.00 0.00 0.00 3.32
1996 2846 3.536570 GAAGGAATGTCAGGGAAGCTAC 58.463 50.000 0.00 0.00 0.00 3.58
1997 2847 2.551270 AGGAATGTCAGGGAAGCTACA 58.449 47.619 0.00 0.00 0.00 2.74
1998 2848 2.503356 AGGAATGTCAGGGAAGCTACAG 59.497 50.000 0.00 0.00 0.00 2.74
1999 2849 2.237392 GGAATGTCAGGGAAGCTACAGT 59.763 50.000 0.00 0.00 0.00 3.55
2000 2850 3.451178 GGAATGTCAGGGAAGCTACAGTA 59.549 47.826 0.00 0.00 0.00 2.74
2001 2851 4.434520 GAATGTCAGGGAAGCTACAGTAC 58.565 47.826 0.00 0.00 0.00 2.73
2002 2852 2.176889 TGTCAGGGAAGCTACAGTACC 58.823 52.381 0.00 0.00 0.00 3.34
2003 2853 1.481363 GTCAGGGAAGCTACAGTACCC 59.519 57.143 0.00 0.00 40.71 3.69
2009 2859 3.031736 GGAAGCTACAGTACCCTGATGA 58.968 50.000 0.00 0.00 41.50 2.92
2553 3405 2.030274 GCAAACGGTAACCATGAAAGCT 60.030 45.455 0.00 0.00 0.00 3.74
2597 3449 0.597568 TGATTGCAAAGTGGGAAGCG 59.402 50.000 1.71 0.00 0.00 4.68
2603 3455 2.879233 AAAGTGGGAAGCGCGGAGA 61.879 57.895 8.83 0.00 0.00 3.71
2617 3469 2.289532 GGAGACTGCTGCAGACCCT 61.290 63.158 34.28 25.01 35.18 4.34
2702 3554 1.676746 CAGGATCTCGAGGTAACCGA 58.323 55.000 13.56 0.00 37.62 4.69
2719 3572 1.339055 CCGACCCTCAAAGAAGATGCA 60.339 52.381 0.00 0.00 0.00 3.96
2726 3579 5.184671 ACCCTCAAAGAAGATGCAGAAAATC 59.815 40.000 0.00 0.00 0.00 2.17
2895 3749 7.888021 CCCTCCATTAGCATATGTAATTAACCA 59.112 37.037 4.29 0.00 0.00 3.67
2985 3840 3.710209 AACTGGGGAGACTTGATTGAG 57.290 47.619 0.00 0.00 0.00 3.02
3221 4076 9.846248 GTTAAAAGAATGCAATAGATCAACAGT 57.154 29.630 0.00 0.00 0.00 3.55
3316 4171 7.552687 CCTATCACAATCTGCTGTTAAGGTTTA 59.447 37.037 0.00 0.00 0.00 2.01
3327 4182 9.556030 CTGCTGTTAAGGTTTACTTATTTTAGC 57.444 33.333 0.00 0.00 41.13 3.09
3352 4217 6.544327 TCCCCTCCACAATAATTCCATATT 57.456 37.500 0.00 0.00 0.00 1.28
3423 4288 1.644509 GAACCTGGGGGCATTCTTTT 58.355 50.000 0.00 0.00 35.63 2.27
3630 4496 5.291178 TGTCATCCTTTTGCATGTTTTGAG 58.709 37.500 0.00 0.00 0.00 3.02
3654 4520 9.680315 GAGGTATGAGTTTATACATGACTACAC 57.320 37.037 0.00 0.00 35.67 2.90
3723 4605 5.059404 AGTTTTGAGTTCAACTGGTTGTG 57.941 39.130 12.34 0.00 41.16 3.33
3810 4692 0.321298 TCTTAGCTTCCAACCGCACC 60.321 55.000 0.00 0.00 0.00 5.01
3889 4771 6.788598 TGTGGCAAAAATATATCATGGTGT 57.211 33.333 0.00 0.00 0.00 4.16
3961 4843 9.449719 AAAATCCATAATAACTCCCGACATATC 57.550 33.333 0.00 0.00 0.00 1.63
3962 4844 7.979786 ATCCATAATAACTCCCGACATATCT 57.020 36.000 0.00 0.00 0.00 1.98
3963 4845 7.792364 TCCATAATAACTCCCGACATATCTT 57.208 36.000 0.00 0.00 0.00 2.40
3964 4846 8.888836 TCCATAATAACTCCCGACATATCTTA 57.111 34.615 0.00 0.00 0.00 2.10
3965 4847 8.967918 TCCATAATAACTCCCGACATATCTTAG 58.032 37.037 0.00 0.00 0.00 2.18
3966 4848 8.967918 CCATAATAACTCCCGACATATCTTAGA 58.032 37.037 0.00 0.00 0.00 2.10
3967 4849 9.790389 CATAATAACTCCCGACATATCTTAGAC 57.210 37.037 0.00 0.00 0.00 2.59
3968 4850 6.837471 ATAACTCCCGACATATCTTAGACC 57.163 41.667 0.00 0.00 0.00 3.85
3969 4851 3.498334 ACTCCCGACATATCTTAGACCC 58.502 50.000 0.00 0.00 0.00 4.46
3970 4852 3.140519 ACTCCCGACATATCTTAGACCCT 59.859 47.826 0.00 0.00 0.00 4.34
3971 4853 3.759618 CTCCCGACATATCTTAGACCCTC 59.240 52.174 0.00 0.00 0.00 4.30
3972 4854 2.826725 CCCGACATATCTTAGACCCTCC 59.173 54.545 0.00 0.00 0.00 4.30
3973 4855 2.488545 CCGACATATCTTAGACCCTCCG 59.511 54.545 0.00 0.00 0.00 4.63
3974 4856 2.095161 CGACATATCTTAGACCCTCCGC 60.095 54.545 0.00 0.00 0.00 5.54
3975 4857 2.231721 GACATATCTTAGACCCTCCGCC 59.768 54.545 0.00 0.00 0.00 6.13
3976 4858 1.550976 CATATCTTAGACCCTCCGCCC 59.449 57.143 0.00 0.00 0.00 6.13
3977 4859 0.178941 TATCTTAGACCCTCCGCCCC 60.179 60.000 0.00 0.00 0.00 5.80
3978 4860 1.962570 ATCTTAGACCCTCCGCCCCT 61.963 60.000 0.00 0.00 0.00 4.79
3979 4861 1.232216 CTTAGACCCTCCGCCCCTA 59.768 63.158 0.00 0.00 0.00 3.53
3980 4862 0.178929 CTTAGACCCTCCGCCCCTAT 60.179 60.000 0.00 0.00 0.00 2.57
3981 4863 1.076677 CTTAGACCCTCCGCCCCTATA 59.923 57.143 0.00 0.00 0.00 1.31
3982 4864 0.407139 TAGACCCTCCGCCCCTATAC 59.593 60.000 0.00 0.00 0.00 1.47
3983 4865 1.912264 GACCCTCCGCCCCTATACC 60.912 68.421 0.00 0.00 0.00 2.73
3984 4866 2.995574 CCCTCCGCCCCTATACCG 60.996 72.222 0.00 0.00 0.00 4.02
3985 4867 2.203596 CCTCCGCCCCTATACCGT 60.204 66.667 0.00 0.00 0.00 4.83
3986 4868 1.835712 CCTCCGCCCCTATACCGTT 60.836 63.158 0.00 0.00 0.00 4.44
3987 4869 1.405272 CCTCCGCCCCTATACCGTTT 61.405 60.000 0.00 0.00 0.00 3.60
3988 4870 0.466963 CTCCGCCCCTATACCGTTTT 59.533 55.000 0.00 0.00 0.00 2.43
3989 4871 0.465287 TCCGCCCCTATACCGTTTTC 59.535 55.000 0.00 0.00 0.00 2.29
3990 4872 0.533531 CCGCCCCTATACCGTTTTCC 60.534 60.000 0.00 0.00 0.00 3.13
3991 4873 0.178533 CGCCCCTATACCGTTTTCCA 59.821 55.000 0.00 0.00 0.00 3.53
3992 4874 1.407162 CGCCCCTATACCGTTTTCCAA 60.407 52.381 0.00 0.00 0.00 3.53
3993 4875 2.747135 CGCCCCTATACCGTTTTCCAAT 60.747 50.000 0.00 0.00 0.00 3.16
3994 4876 3.494749 CGCCCCTATACCGTTTTCCAATA 60.495 47.826 0.00 0.00 0.00 1.90
3995 4877 4.463070 GCCCCTATACCGTTTTCCAATAA 58.537 43.478 0.00 0.00 0.00 1.40
3996 4878 4.888823 GCCCCTATACCGTTTTCCAATAAA 59.111 41.667 0.00 0.00 0.00 1.40
3997 4879 5.009310 GCCCCTATACCGTTTTCCAATAAAG 59.991 44.000 0.00 0.00 0.00 1.85
3998 4880 6.358991 CCCCTATACCGTTTTCCAATAAAGA 58.641 40.000 0.00 0.00 0.00 2.52
3999 4881 6.829811 CCCCTATACCGTTTTCCAATAAAGAA 59.170 38.462 0.00 0.00 0.00 2.52
4000 4882 7.504574 CCCCTATACCGTTTTCCAATAAAGAAT 59.495 37.037 0.00 0.00 0.00 2.40
4001 4883 8.909923 CCCTATACCGTTTTCCAATAAAGAATT 58.090 33.333 0.00 0.00 0.00 2.17
4002 4884 9.730420 CCTATACCGTTTTCCAATAAAGAATTG 57.270 33.333 0.00 0.00 43.99 2.32
4373 5255 0.035820 GGTGGCCACCGATGAAAGTA 60.036 55.000 38.35 0.00 42.29 2.24
4502 5384 4.466370 TGGTGAGTTCACTTCTATGGTAGG 59.534 45.833 11.67 0.00 45.73 3.18
4530 5412 1.807226 CGTCTGCGGTGTGATCCTA 59.193 57.895 0.00 0.00 0.00 2.94
4609 5492 2.860136 GGAGACTTTGTTTTGCAGCAAC 59.140 45.455 7.54 0.00 0.00 4.17
4635 5518 9.330063 CTAATGAGCTATGAACTTTTGTGGATA 57.670 33.333 0.00 0.00 0.00 2.59
4645 5528 8.760980 TGAACTTTTGTGGATATATTTAGGGG 57.239 34.615 0.00 0.00 0.00 4.79
4646 5529 7.782644 TGAACTTTTGTGGATATATTTAGGGGG 59.217 37.037 0.00 0.00 0.00 5.40
4647 5530 7.233855 ACTTTTGTGGATATATTTAGGGGGT 57.766 36.000 0.00 0.00 0.00 4.95
4648 5531 7.066781 ACTTTTGTGGATATATTTAGGGGGTG 58.933 38.462 0.00 0.00 0.00 4.61
4649 5532 6.599986 TTTGTGGATATATTTAGGGGGTGT 57.400 37.500 0.00 0.00 0.00 4.16
4650 5533 6.599986 TTGTGGATATATTTAGGGGGTGTT 57.400 37.500 0.00 0.00 0.00 3.32
4651 5534 6.599986 TGTGGATATATTTAGGGGGTGTTT 57.400 37.500 0.00 0.00 0.00 2.83
4652 5535 6.369629 TGTGGATATATTTAGGGGGTGTTTG 58.630 40.000 0.00 0.00 0.00 2.93
4653 5536 5.773176 GTGGATATATTTAGGGGGTGTTTGG 59.227 44.000 0.00 0.00 0.00 3.28
4654 5537 5.437043 TGGATATATTTAGGGGGTGTTTGGT 59.563 40.000 0.00 0.00 0.00 3.67
4655 5538 6.068140 TGGATATATTTAGGGGGTGTTTGGTT 60.068 38.462 0.00 0.00 0.00 3.67
4656 5539 6.492429 GGATATATTTAGGGGGTGTTTGGTTC 59.508 42.308 0.00 0.00 0.00 3.62
4657 5540 2.385135 TTTAGGGGGTGTTTGGTTCC 57.615 50.000 0.00 0.00 0.00 3.62
4658 5541 1.232909 TTAGGGGGTGTTTGGTTCCA 58.767 50.000 0.00 0.00 0.00 3.53
4659 5542 0.774908 TAGGGGGTGTTTGGTTCCAG 59.225 55.000 0.00 0.00 0.00 3.86
4660 5543 1.533033 GGGGGTGTTTGGTTCCAGG 60.533 63.158 0.00 0.00 0.00 4.45
4661 5544 1.533033 GGGGTGTTTGGTTCCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
4662 5545 1.539665 GGGTGTTTGGTTCCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
4663 5546 0.114364 GGGTGTTTGGTTCCAGGGAT 59.886 55.000 0.00 0.00 0.00 3.85
4664 5547 1.482365 GGGTGTTTGGTTCCAGGGATT 60.482 52.381 0.00 0.00 0.00 3.01
4665 5548 2.325484 GGTGTTTGGTTCCAGGGATTT 58.675 47.619 0.00 0.00 0.00 2.17
4666 5549 2.703536 GGTGTTTGGTTCCAGGGATTTT 59.296 45.455 0.00 0.00 0.00 1.82
4667 5550 3.135712 GGTGTTTGGTTCCAGGGATTTTT 59.864 43.478 0.00 0.00 0.00 1.94
4695 5578 2.579410 GGAAGTCCCTAGCAAACCAA 57.421 50.000 0.00 0.00 0.00 3.67
4696 5579 2.871453 GGAAGTCCCTAGCAAACCAAA 58.129 47.619 0.00 0.00 0.00 3.28
4697 5580 2.557056 GGAAGTCCCTAGCAAACCAAAC 59.443 50.000 0.00 0.00 0.00 2.93
4698 5581 3.219281 GAAGTCCCTAGCAAACCAAACA 58.781 45.455 0.00 0.00 0.00 2.83
4699 5582 2.863809 AGTCCCTAGCAAACCAAACAG 58.136 47.619 0.00 0.00 0.00 3.16
4700 5583 1.886542 GTCCCTAGCAAACCAAACAGG 59.113 52.381 0.00 0.00 45.67 4.00
4701 5584 1.203001 TCCCTAGCAAACCAAACAGGG 60.203 52.381 0.00 0.00 43.52 4.45
4702 5585 1.480498 CCCTAGCAAACCAAACAGGGT 60.480 52.381 0.00 0.00 45.04 4.34
4703 5586 1.613437 CCTAGCAAACCAAACAGGGTG 59.387 52.381 0.00 0.00 41.32 4.61
4704 5587 2.582052 CTAGCAAACCAAACAGGGTGA 58.418 47.619 0.00 0.00 41.32 4.02
4705 5588 1.402787 AGCAAACCAAACAGGGTGAG 58.597 50.000 0.00 0.00 41.32 3.51
4706 5589 1.064017 AGCAAACCAAACAGGGTGAGA 60.064 47.619 0.00 0.00 41.32 3.27
4707 5590 1.067060 GCAAACCAAACAGGGTGAGAC 59.933 52.381 0.00 0.00 41.32 3.36
4708 5591 2.654863 CAAACCAAACAGGGTGAGACT 58.345 47.619 0.00 0.00 41.32 3.24
4709 5592 3.023832 CAAACCAAACAGGGTGAGACTT 58.976 45.455 0.00 0.00 41.32 3.01
4710 5593 3.382083 AACCAAACAGGGTGAGACTTT 57.618 42.857 0.00 0.00 41.32 2.66
4711 5594 3.382083 ACCAAACAGGGTGAGACTTTT 57.618 42.857 0.00 0.00 43.89 2.27
4712 5595 3.708451 ACCAAACAGGGTGAGACTTTTT 58.292 40.909 0.00 0.00 43.89 1.94
4742 5625 7.859613 CTTTTTGCTAAAAGTCCTTAGAAGC 57.140 36.000 20.79 0.00 43.34 3.86
4743 5626 6.952773 TTTTGCTAAAAGTCCTTAGAAGCA 57.047 33.333 6.73 6.73 31.59 3.91
4744 5627 5.941948 TTGCTAAAAGTCCTTAGAAGCAC 57.058 39.130 9.21 0.00 31.59 4.40
4745 5628 4.324267 TGCTAAAAGTCCTTAGAAGCACC 58.676 43.478 6.73 0.00 31.59 5.01
4746 5629 4.041691 TGCTAAAAGTCCTTAGAAGCACCT 59.958 41.667 6.73 0.00 31.59 4.00
4747 5630 4.632251 GCTAAAAGTCCTTAGAAGCACCTC 59.368 45.833 0.00 0.00 31.59 3.85
4748 5631 3.704800 AAAGTCCTTAGAAGCACCTCC 57.295 47.619 0.00 0.00 0.00 4.30
4749 5632 2.632763 AGTCCTTAGAAGCACCTCCT 57.367 50.000 0.00 0.00 0.00 3.69
4750 5633 2.909217 AGTCCTTAGAAGCACCTCCTT 58.091 47.619 0.00 0.00 0.00 3.36
4751 5634 4.062490 AGTCCTTAGAAGCACCTCCTTA 57.938 45.455 0.00 0.00 0.00 2.69
4752 5635 4.426704 AGTCCTTAGAAGCACCTCCTTAA 58.573 43.478 0.00 0.00 0.00 1.85
4753 5636 4.844655 AGTCCTTAGAAGCACCTCCTTAAA 59.155 41.667 0.00 0.00 0.00 1.52
4754 5637 5.309806 AGTCCTTAGAAGCACCTCCTTAAAA 59.690 40.000 0.00 0.00 0.00 1.52
4755 5638 5.644206 GTCCTTAGAAGCACCTCCTTAAAAG 59.356 44.000 0.00 0.00 0.00 2.27
4756 5639 5.309806 TCCTTAGAAGCACCTCCTTAAAAGT 59.690 40.000 0.00 0.00 0.00 2.66
4757 5640 5.644206 CCTTAGAAGCACCTCCTTAAAAGTC 59.356 44.000 0.00 0.00 0.00 3.01
4758 5641 4.984146 AGAAGCACCTCCTTAAAAGTCT 57.016 40.909 0.00 0.00 0.00 3.24
4759 5642 5.311844 AGAAGCACCTCCTTAAAAGTCTT 57.688 39.130 0.00 0.00 0.00 3.01
4760 5643 5.696030 AGAAGCACCTCCTTAAAAGTCTTT 58.304 37.500 0.00 0.00 0.00 2.52
4761 5644 6.129874 AGAAGCACCTCCTTAAAAGTCTTTT 58.870 36.000 14.76 14.76 36.67 2.27
4762 5645 6.607600 AGAAGCACCTCCTTAAAAGTCTTTTT 59.392 34.615 15.53 3.15 39.69 1.94
4763 5646 6.392625 AGCACCTCCTTAAAAGTCTTTTTC 57.607 37.500 15.53 0.00 37.64 2.29
4764 5647 5.891551 AGCACCTCCTTAAAAGTCTTTTTCA 59.108 36.000 15.53 3.17 37.64 2.69
4765 5648 6.379988 AGCACCTCCTTAAAAGTCTTTTTCAA 59.620 34.615 15.53 4.74 37.64 2.69
4766 5649 7.039270 GCACCTCCTTAAAAGTCTTTTTCAAA 58.961 34.615 15.53 4.07 37.64 2.69
4767 5650 7.547722 GCACCTCCTTAAAAGTCTTTTTCAAAA 59.452 33.333 15.53 3.74 37.64 2.44
4768 5651 9.430623 CACCTCCTTAAAAGTCTTTTTCAAAAA 57.569 29.630 15.53 3.40 37.64 1.94
4769 5652 9.653287 ACCTCCTTAAAAGTCTTTTTCAAAAAG 57.347 29.630 15.46 15.46 37.64 2.27
4770 5653 9.653287 CCTCCTTAAAAGTCTTTTTCAAAAAGT 57.347 29.630 19.82 5.42 37.64 2.66
4772 5655 9.647797 TCCTTAAAAGTCTTTTTCAAAAAGTCC 57.352 29.630 19.82 12.77 37.64 3.85
4773 5656 9.653287 CCTTAAAAGTCTTTTTCAAAAAGTCCT 57.347 29.630 19.82 14.47 37.64 3.85
4777 5660 8.589701 AAAGTCTTTTTCAAAAAGTCCTAGGA 57.410 30.769 19.82 7.62 0.00 2.94
4778 5661 8.589701 AAGTCTTTTTCAAAAAGTCCTAGGAA 57.410 30.769 19.82 0.00 0.00 3.36
4779 5662 7.997482 AGTCTTTTTCAAAAAGTCCTAGGAAC 58.003 34.615 19.82 8.14 0.00 3.62
4780 5663 7.834681 AGTCTTTTTCAAAAAGTCCTAGGAACT 59.165 33.333 19.82 10.45 46.37 3.01
4781 5664 9.117183 GTCTTTTTCAAAAAGTCCTAGGAACTA 57.883 33.333 19.82 0.00 41.75 2.24
4811 5694 6.282199 GTCATAGGACTAGAGAACCAAACA 57.718 41.667 0.00 0.00 40.99 2.83
4812 5695 6.100668 GTCATAGGACTAGAGAACCAAACAC 58.899 44.000 0.00 0.00 40.99 3.32
4813 5696 5.187186 TCATAGGACTAGAGAACCAAACACC 59.813 44.000 0.00 0.00 0.00 4.16
4814 5697 3.314693 AGGACTAGAGAACCAAACACCA 58.685 45.455 0.00 0.00 0.00 4.17
4815 5698 3.071167 AGGACTAGAGAACCAAACACCAC 59.929 47.826 0.00 0.00 0.00 4.16
4816 5699 3.400255 GACTAGAGAACCAAACACCACC 58.600 50.000 0.00 0.00 0.00 4.61
4817 5700 3.046374 ACTAGAGAACCAAACACCACCT 58.954 45.455 0.00 0.00 0.00 4.00
4818 5701 3.458487 ACTAGAGAACCAAACACCACCTT 59.542 43.478 0.00 0.00 0.00 3.50
4819 5702 4.657039 ACTAGAGAACCAAACACCACCTTA 59.343 41.667 0.00 0.00 0.00 2.69
4820 5703 4.086706 AGAGAACCAAACACCACCTTAG 57.913 45.455 0.00 0.00 0.00 2.18
4956 5896 4.761975 AGTTTGGTCTTTTGTCACGTAGA 58.238 39.130 0.00 0.00 0.00 2.59
4971 5911 6.806739 TGTCACGTAGAATGTGATCTGTAAAG 59.193 38.462 5.33 0.00 44.89 1.85
5448 6401 1.078143 GGTTCTGCTGCGATTCCCT 60.078 57.895 0.00 0.00 0.00 4.20
5472 6425 1.624813 TGGGGAACGGTCGTCTTAAAT 59.375 47.619 0.00 0.00 0.00 1.40
5473 6426 2.038820 TGGGGAACGGTCGTCTTAAATT 59.961 45.455 0.00 0.00 0.00 1.82
5495 6449 1.218316 CGTGGTAGTGCCTTCTCCC 59.782 63.158 0.00 0.00 38.35 4.30
5504 6458 2.581354 CCTTCTCCCACCTCGCAG 59.419 66.667 0.00 0.00 0.00 5.18
5520 6474 1.078214 CAGCATTCCTCTTCGGGCA 60.078 57.895 0.00 0.00 0.00 5.36
5549 6503 2.016393 GATGGACGGCGGTCAGATCA 62.016 60.000 23.82 13.71 45.28 2.92
5550 6504 1.402896 ATGGACGGCGGTCAGATCAT 61.403 55.000 23.82 15.18 45.28 2.45
5559 6513 3.430929 GGCGGTCAGATCATGTAAAGACT 60.431 47.826 0.00 0.00 0.00 3.24
5569 6523 4.367023 TAAAGACTGGCGCGCGGT 62.367 61.111 33.06 25.26 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.113876 CCATTTTTCGTCTAATGAGTAACAAAC 57.886 33.333 0.00 0.00 34.44 2.93
34 35 2.415697 AAGCGAACCACCATTTTTCG 57.584 45.000 0.00 0.00 43.92 3.46
62 63 3.926616 ACTGATTGGTACCACTTTCTCG 58.073 45.455 16.04 9.77 0.00 4.04
139 140 5.399991 ACATTATGGAACGGAGGGAGTATA 58.600 41.667 0.00 0.00 0.00 1.47
150 151 9.731819 AATCTATATACGCTACATTATGGAACG 57.268 33.333 0.00 0.00 0.00 3.95
370 1156 7.448777 TCCCTTTGTTTTATAATGTAGTGCACA 59.551 33.333 21.04 1.84 42.69 4.57
463 1252 0.107214 GATCCATTCGGGCTCCACAA 60.107 55.000 0.00 0.00 36.21 3.33
488 1277 6.698380 TCTAGAAATGCTACCGAAACTTCTT 58.302 36.000 0.00 0.00 0.00 2.52
686 1490 0.652592 GATGTGCGGTGGATCTTTCG 59.347 55.000 0.00 0.00 0.00 3.46
809 1613 4.803426 GCGACCTCCACGGAGCAG 62.803 72.222 7.64 2.43 40.69 4.24
1105 1916 2.593978 CAGCCCCATCACCTCCTG 59.406 66.667 0.00 0.00 0.00 3.86
1126 1937 4.803426 CGCGTCCAGGAGCTCCAC 62.803 72.222 33.90 21.88 38.89 4.02
1503 2322 7.016268 TCCCTCCATAAAGAAATATAAGAGCGT 59.984 37.037 0.00 0.00 0.00 5.07
1504 2323 7.386851 TCCCTCCATAAAGAAATATAAGAGCG 58.613 38.462 0.00 0.00 0.00 5.03
1505 2324 8.379331 ACTCCCTCCATAAAGAAATATAAGAGC 58.621 37.037 0.00 0.00 0.00 4.09
1513 2332 9.359653 CAAATGATACTCCCTCCATAAAGAAAT 57.640 33.333 0.00 0.00 0.00 2.17
1514 2333 8.336235 ACAAATGATACTCCCTCCATAAAGAAA 58.664 33.333 0.00 0.00 0.00 2.52
1515 2334 7.872138 ACAAATGATACTCCCTCCATAAAGAA 58.128 34.615 0.00 0.00 0.00 2.52
1516 2335 7.451731 ACAAATGATACTCCCTCCATAAAGA 57.548 36.000 0.00 0.00 0.00 2.52
1517 2336 8.210946 TGTACAAATGATACTCCCTCCATAAAG 58.789 37.037 0.00 0.00 0.00 1.85
1518 2337 8.096621 TGTACAAATGATACTCCCTCCATAAA 57.903 34.615 0.00 0.00 0.00 1.40
1519 2338 7.684317 TGTACAAATGATACTCCCTCCATAA 57.316 36.000 0.00 0.00 0.00 1.90
1520 2339 7.684317 TTGTACAAATGATACTCCCTCCATA 57.316 36.000 5.64 0.00 0.00 2.74
1521 2340 6.575244 TTGTACAAATGATACTCCCTCCAT 57.425 37.500 5.64 0.00 0.00 3.41
1522 2341 6.381498 TTTGTACAAATGATACTCCCTCCA 57.619 37.500 17.01 0.00 0.00 3.86
1523 2342 5.823045 CCTTTGTACAAATGATACTCCCTCC 59.177 44.000 20.83 0.00 0.00 4.30
1524 2343 6.650120 TCCTTTGTACAAATGATACTCCCTC 58.350 40.000 20.83 0.00 0.00 4.30
1525 2344 6.636454 TCCTTTGTACAAATGATACTCCCT 57.364 37.500 20.83 0.00 0.00 4.20
1526 2345 8.974060 TTATCCTTTGTACAAATGATACTCCC 57.026 34.615 30.21 0.00 37.51 4.30
1539 2358 7.462571 AAGGGAACATGTTTATCCTTTGTAC 57.537 36.000 24.05 6.51 32.02 2.90
1646 2495 4.217118 ACATCACACTGAGAATCCAAAAGC 59.783 41.667 0.00 0.00 0.00 3.51
1650 2499 6.998074 ACTAAAACATCACACTGAGAATCCAA 59.002 34.615 0.00 0.00 0.00 3.53
1707 2556 4.093472 TCCAGAACTGAAAAATCCGGAA 57.907 40.909 9.01 0.00 0.00 4.30
1711 2560 7.511959 AGTACTTTCCAGAACTGAAAAATCC 57.488 36.000 3.19 0.00 0.00 3.01
1712 2561 9.803315 AAAAGTACTTTCCAGAACTGAAAAATC 57.197 29.630 20.78 0.00 31.45 2.17
1766 2615 2.206750 AGAAAACACTAAGAACGCGCA 58.793 42.857 5.73 0.00 0.00 6.09
1767 2616 2.943843 AGAAAACACTAAGAACGCGC 57.056 45.000 5.73 0.00 0.00 6.86
1768 2617 4.898488 CAGAAAGAAAACACTAAGAACGCG 59.102 41.667 3.53 3.53 0.00 6.01
1884 2733 9.733556 TTTCTGCCAACATATCTAAAGTTCTAA 57.266 29.630 0.00 0.00 0.00 2.10
1885 2734 9.733556 TTTTCTGCCAACATATCTAAAGTTCTA 57.266 29.630 0.00 0.00 0.00 2.10
1886 2735 8.635765 TTTTCTGCCAACATATCTAAAGTTCT 57.364 30.769 0.00 0.00 0.00 3.01
1923 2773 3.318017 CGTTGGTCCTCTTAGACTTGTG 58.682 50.000 0.00 0.00 36.95 3.33
1959 2809 4.920640 TCCTTCGTGATGTTAGAGGATC 57.079 45.455 0.00 0.00 0.00 3.36
1960 2810 5.129485 ACATTCCTTCGTGATGTTAGAGGAT 59.871 40.000 0.00 0.00 0.00 3.24
1961 2811 4.466370 ACATTCCTTCGTGATGTTAGAGGA 59.534 41.667 0.00 0.00 0.00 3.71
1962 2812 4.759782 ACATTCCTTCGTGATGTTAGAGG 58.240 43.478 0.00 0.00 0.00 3.69
1963 2813 5.410924 TGACATTCCTTCGTGATGTTAGAG 58.589 41.667 0.00 0.00 0.00 2.43
1964 2814 5.400066 TGACATTCCTTCGTGATGTTAGA 57.600 39.130 0.00 0.00 0.00 2.10
1965 2815 4.568359 CCTGACATTCCTTCGTGATGTTAG 59.432 45.833 0.00 0.00 0.00 2.34
1966 2816 4.503910 CCTGACATTCCTTCGTGATGTTA 58.496 43.478 0.00 0.00 0.00 2.41
1967 2817 3.338249 CCTGACATTCCTTCGTGATGTT 58.662 45.455 0.00 0.00 0.00 2.71
1968 2818 2.355108 CCCTGACATTCCTTCGTGATGT 60.355 50.000 0.00 0.00 0.00 3.06
1969 2819 2.093500 TCCCTGACATTCCTTCGTGATG 60.093 50.000 0.00 0.00 0.00 3.07
1970 2820 2.187958 TCCCTGACATTCCTTCGTGAT 58.812 47.619 0.00 0.00 0.00 3.06
1971 2821 1.639722 TCCCTGACATTCCTTCGTGA 58.360 50.000 0.00 0.00 0.00 4.35
1972 2822 2.350522 CTTCCCTGACATTCCTTCGTG 58.649 52.381 0.00 0.00 0.00 4.35
1973 2823 1.339151 GCTTCCCTGACATTCCTTCGT 60.339 52.381 0.00 0.00 0.00 3.85
1974 2824 1.065854 AGCTTCCCTGACATTCCTTCG 60.066 52.381 0.00 0.00 0.00 3.79
1975 2825 2.797177 AGCTTCCCTGACATTCCTTC 57.203 50.000 0.00 0.00 0.00 3.46
1976 2826 2.912956 TGTAGCTTCCCTGACATTCCTT 59.087 45.455 0.00 0.00 0.00 3.36
1977 2827 2.503356 CTGTAGCTTCCCTGACATTCCT 59.497 50.000 0.00 0.00 0.00 3.36
1978 2828 2.237392 ACTGTAGCTTCCCTGACATTCC 59.763 50.000 0.00 0.00 0.00 3.01
1979 2829 3.618690 ACTGTAGCTTCCCTGACATTC 57.381 47.619 0.00 0.00 0.00 2.67
1980 2830 3.197983 GGTACTGTAGCTTCCCTGACATT 59.802 47.826 9.64 0.00 0.00 2.71
1981 2831 2.766828 GGTACTGTAGCTTCCCTGACAT 59.233 50.000 9.64 0.00 0.00 3.06
1982 2832 2.176889 GGTACTGTAGCTTCCCTGACA 58.823 52.381 9.64 0.00 0.00 3.58
1983 2833 1.481363 GGGTACTGTAGCTTCCCTGAC 59.519 57.143 15.74 0.00 35.63 3.51
1984 2834 1.361543 AGGGTACTGTAGCTTCCCTGA 59.638 52.381 15.74 0.00 45.64 3.86
1985 2835 1.867363 AGGGTACTGTAGCTTCCCTG 58.133 55.000 15.74 0.00 45.64 4.45
1987 2837 1.861982 TCAGGGTACTGTAGCTTCCC 58.138 55.000 15.74 9.60 45.14 3.97
1988 2838 3.031736 TCATCAGGGTACTGTAGCTTCC 58.968 50.000 15.74 0.70 45.14 3.46
1989 2839 4.946478 ATCATCAGGGTACTGTAGCTTC 57.054 45.455 15.74 1.62 45.14 3.86
1990 2840 5.431765 CAAATCATCAGGGTACTGTAGCTT 58.568 41.667 15.74 6.40 45.14 3.74
1991 2841 4.141620 CCAAATCATCAGGGTACTGTAGCT 60.142 45.833 15.74 0.00 45.14 3.32
1992 2842 4.130118 CCAAATCATCAGGGTACTGTAGC 58.870 47.826 8.46 8.46 45.14 3.58
1993 2843 5.359194 ACCAAATCATCAGGGTACTGTAG 57.641 43.478 0.00 0.00 45.14 2.74
1994 2844 5.338871 GGAACCAAATCATCAGGGTACTGTA 60.339 44.000 0.00 0.00 45.14 2.74
1995 2845 4.567747 GGAACCAAATCATCAGGGTACTGT 60.568 45.833 0.00 0.00 45.14 3.55
1996 2846 3.947834 GGAACCAAATCATCAGGGTACTG 59.052 47.826 0.00 0.00 46.30 2.74
1997 2847 3.852578 AGGAACCAAATCATCAGGGTACT 59.147 43.478 0.00 0.00 32.21 2.73
1998 2848 4.236527 AGGAACCAAATCATCAGGGTAC 57.763 45.455 0.00 0.00 32.21 3.34
1999 2849 4.044065 ACAAGGAACCAAATCATCAGGGTA 59.956 41.667 0.00 0.00 32.21 3.69
2000 2850 3.181418 ACAAGGAACCAAATCATCAGGGT 60.181 43.478 0.00 0.00 34.43 4.34
2001 2851 3.194116 CACAAGGAACCAAATCATCAGGG 59.806 47.826 0.00 0.00 0.00 4.45
2002 2852 3.194116 CCACAAGGAACCAAATCATCAGG 59.806 47.826 0.00 0.00 36.89 3.86
2003 2853 3.828451 ACCACAAGGAACCAAATCATCAG 59.172 43.478 0.00 0.00 38.69 2.90
2004 2854 3.573538 CACCACAAGGAACCAAATCATCA 59.426 43.478 0.00 0.00 38.69 3.07
2005 2855 3.056607 CCACCACAAGGAACCAAATCATC 60.057 47.826 0.00 0.00 38.69 2.92
2009 2859 2.765689 TCCACCACAAGGAACCAAAT 57.234 45.000 0.00 0.00 38.69 2.32
2042 2892 1.073768 GAGACTCGAAGCACCGAAGC 61.074 60.000 2.29 0.00 38.17 3.86
2043 2893 0.241213 TGAGACTCGAAGCACCGAAG 59.759 55.000 0.00 0.47 38.17 3.79
2044 2894 0.671796 TTGAGACTCGAAGCACCGAA 59.328 50.000 0.00 0.00 38.17 4.30
2045 2895 0.241213 CTTGAGACTCGAAGCACCGA 59.759 55.000 0.00 0.73 37.03 4.69
2046 2896 0.039074 ACTTGAGACTCGAAGCACCG 60.039 55.000 12.02 0.00 0.00 4.94
2047 2897 1.670380 GGACTTGAGACTCGAAGCACC 60.670 57.143 12.02 11.75 0.00 5.01
2048 2898 1.271102 AGGACTTGAGACTCGAAGCAC 59.729 52.381 12.02 7.38 0.00 4.40
2049 2899 1.621992 AGGACTTGAGACTCGAAGCA 58.378 50.000 12.02 0.00 0.00 3.91
2553 3405 2.335681 TGGAGACCATGAACCACCTA 57.664 50.000 0.00 0.00 0.00 3.08
2597 3449 2.813042 GTCTGCAGCAGTCTCCGC 60.813 66.667 22.10 3.66 32.61 5.54
2617 3469 2.557924 CAACTGAATAACTTGCCAGGCA 59.442 45.455 11.22 11.22 36.47 4.75
2622 3474 3.366374 GCTGGACAACTGAATAACTTGCC 60.366 47.826 0.00 0.00 0.00 4.52
2702 3554 3.795688 TTCTGCATCTTCTTTGAGGGT 57.204 42.857 0.00 0.00 0.00 4.34
2719 3572 9.799106 ATTGGATTCCGATATACAAGATTTTCT 57.201 29.630 3.38 0.00 0.00 2.52
2726 3579 8.383318 AGAAACATTGGATTCCGATATACAAG 57.617 34.615 5.05 0.00 0.00 3.16
2772 3625 3.260632 ACCTTATTTTCATTGGTGGCCAC 59.739 43.478 28.57 28.57 30.78 5.01
2866 3719 3.795688 ACATATGCTAATGGAGGGGTG 57.204 47.619 1.58 0.00 0.00 4.61
2895 3749 5.934781 TGTTTATCAAATTTGTTGGGCCTT 58.065 33.333 17.47 0.00 0.00 4.35
2985 3840 0.687354 TTTCCCTCACACCTCTCTGC 59.313 55.000 0.00 0.00 0.00 4.26
3245 4100 6.479972 TTGTGGTAATAGTACTGCTAGCAT 57.520 37.500 19.72 11.11 32.45 3.79
3316 4171 4.291249 TGTGGAGGGGAAGCTAAAATAAGT 59.709 41.667 0.00 0.00 0.00 2.24
3327 4182 4.249638 TGGAATTATTGTGGAGGGGAAG 57.750 45.455 0.00 0.00 0.00 3.46
3352 4217 9.920946 ACTATATGGAGCAAAAGAAGGAAAATA 57.079 29.630 0.00 0.00 0.00 1.40
3444 4310 9.381033 CTCATGTTTTCTCTATGTCAGAAGATT 57.619 33.333 0.00 0.00 31.48 2.40
3630 4496 9.982651 ATGTGTAGTCATGTATAAACTCATACC 57.017 33.333 0.00 0.00 31.52 2.73
3723 4605 1.450312 CCTCTCGGCATGGTTGACC 60.450 63.158 0.00 0.00 0.00 4.02
3810 4692 6.219417 AGATATATGCCTCAATCTTCCTCG 57.781 41.667 0.00 0.00 0.00 4.63
3889 4771 2.711009 AGATCCTCGGGCATCCAATTAA 59.289 45.455 0.00 0.00 0.00 1.40
3933 4815 8.617290 ATGTCGGGAGTTATTATGGATTTTAC 57.383 34.615 0.00 0.00 0.00 2.01
3961 4843 0.178929 ATAGGGGCGGAGGGTCTAAG 60.179 60.000 0.00 0.00 0.00 2.18
3962 4844 1.160702 TATAGGGGCGGAGGGTCTAA 58.839 55.000 0.00 0.00 0.00 2.10
3963 4845 0.407139 GTATAGGGGCGGAGGGTCTA 59.593 60.000 0.00 0.00 0.00 2.59
3964 4846 1.155624 GTATAGGGGCGGAGGGTCT 59.844 63.158 0.00 0.00 0.00 3.85
3965 4847 1.912264 GGTATAGGGGCGGAGGGTC 60.912 68.421 0.00 0.00 0.00 4.46
3966 4848 2.203466 GGTATAGGGGCGGAGGGT 59.797 66.667 0.00 0.00 0.00 4.34
3967 4849 2.995574 CGGTATAGGGGCGGAGGG 60.996 72.222 0.00 0.00 0.00 4.30
3968 4850 1.405272 AAACGGTATAGGGGCGGAGG 61.405 60.000 0.00 0.00 0.00 4.30
3969 4851 0.466963 AAAACGGTATAGGGGCGGAG 59.533 55.000 0.00 0.00 0.00 4.63
3970 4852 0.465287 GAAAACGGTATAGGGGCGGA 59.535 55.000 0.00 0.00 0.00 5.54
3971 4853 0.533531 GGAAAACGGTATAGGGGCGG 60.534 60.000 0.00 0.00 0.00 6.13
3972 4854 0.178533 TGGAAAACGGTATAGGGGCG 59.821 55.000 0.00 0.00 0.00 6.13
3973 4855 2.423446 TTGGAAAACGGTATAGGGGC 57.577 50.000 0.00 0.00 0.00 5.80
3974 4856 6.358991 TCTTTATTGGAAAACGGTATAGGGG 58.641 40.000 0.00 0.00 0.00 4.79
3975 4857 7.868906 TTCTTTATTGGAAAACGGTATAGGG 57.131 36.000 0.00 0.00 0.00 3.53
3976 4858 9.730420 CAATTCTTTATTGGAAAACGGTATAGG 57.270 33.333 0.00 0.00 40.00 2.57
3981 4863 9.020731 ACTATCAATTCTTTATTGGAAAACGGT 57.979 29.630 0.00 0.00 43.19 4.83
3982 4864 9.289303 CACTATCAATTCTTTATTGGAAAACGG 57.711 33.333 0.00 0.00 43.19 4.44
3983 4865 8.798153 GCACTATCAATTCTTTATTGGAAAACG 58.202 33.333 0.00 0.00 43.19 3.60
3984 4866 9.638239 TGCACTATCAATTCTTTATTGGAAAAC 57.362 29.630 0.00 0.00 43.19 2.43
3985 4867 9.638239 GTGCACTATCAATTCTTTATTGGAAAA 57.362 29.630 10.32 0.00 43.19 2.29
3986 4868 9.023962 AGTGCACTATCAATTCTTTATTGGAAA 57.976 29.630 20.16 0.00 43.19 3.13
3987 4869 8.579850 AGTGCACTATCAATTCTTTATTGGAA 57.420 30.769 20.16 0.00 43.19 3.53
3988 4870 8.579850 AAGTGCACTATCAATTCTTTATTGGA 57.420 30.769 22.01 0.00 43.19 3.53
3989 4871 9.643693 AAAAGTGCACTATCAATTCTTTATTGG 57.356 29.630 22.01 0.00 43.19 3.16
3994 4876 9.768662 ATTTGAAAAGTGCACTATCAATTCTTT 57.231 25.926 31.99 22.06 34.25 2.52
3995 4877 9.199982 CATTTGAAAAGTGCACTATCAATTCTT 57.800 29.630 31.99 20.91 34.25 2.52
3996 4878 8.579006 TCATTTGAAAAGTGCACTATCAATTCT 58.421 29.630 31.99 22.42 33.04 2.40
3997 4879 8.746922 TCATTTGAAAAGTGCACTATCAATTC 57.253 30.769 31.99 24.13 33.04 2.17
3998 4880 9.545105 TTTCATTTGAAAAGTGCACTATCAATT 57.455 25.926 31.99 27.56 40.68 2.32
3999 4881 9.715121 ATTTCATTTGAAAAGTGCACTATCAAT 57.285 25.926 31.99 23.48 45.81 2.57
4139 5021 4.003648 GTGCTGCCTGTGATAGTAAAAGT 58.996 43.478 0.00 0.00 0.00 2.66
4373 5255 3.454082 AGCTCCAATCTTCCTTTCTCGAT 59.546 43.478 0.00 0.00 0.00 3.59
4530 5412 3.056821 TGATTTCGACGACCAGAAGATGT 60.057 43.478 0.00 0.00 0.00 3.06
4609 5492 7.615582 TCCACAAAAGTTCATAGCTCATTAG 57.384 36.000 0.00 0.00 0.00 1.73
4635 5518 4.046103 TGGAACCAAACACCCCCTAAATAT 59.954 41.667 0.00 0.00 0.00 1.28
4638 5521 1.574339 TGGAACCAAACACCCCCTAAA 59.426 47.619 0.00 0.00 0.00 1.85
4643 5526 1.533033 CCCTGGAACCAAACACCCC 60.533 63.158 0.00 0.00 0.00 4.95
4644 5527 0.114364 ATCCCTGGAACCAAACACCC 59.886 55.000 0.00 0.00 0.00 4.61
4645 5528 2.009681 AATCCCTGGAACCAAACACC 57.990 50.000 0.00 0.00 0.00 4.16
4646 5529 4.415881 AAAAATCCCTGGAACCAAACAC 57.584 40.909 0.00 0.00 0.00 3.32
4676 5559 2.557056 GTTTGGTTTGCTAGGGACTTCC 59.443 50.000 0.00 0.00 41.75 3.46
4677 5560 3.219281 TGTTTGGTTTGCTAGGGACTTC 58.781 45.455 0.00 0.00 41.75 3.01
4678 5561 3.222603 CTGTTTGGTTTGCTAGGGACTT 58.777 45.455 0.00 0.00 41.75 3.01
4679 5562 2.489073 CCTGTTTGGTTTGCTAGGGACT 60.489 50.000 0.00 0.00 46.37 3.85
4680 5563 1.886542 CCTGTTTGGTTTGCTAGGGAC 59.113 52.381 0.00 0.00 0.00 4.46
4681 5564 1.203001 CCCTGTTTGGTTTGCTAGGGA 60.203 52.381 0.00 0.00 46.19 4.20
4682 5565 1.256812 CCCTGTTTGGTTTGCTAGGG 58.743 55.000 0.00 0.00 38.96 3.53
4683 5566 1.613437 CACCCTGTTTGGTTTGCTAGG 59.387 52.381 0.00 0.00 36.12 3.02
4684 5567 2.554032 CTCACCCTGTTTGGTTTGCTAG 59.446 50.000 0.00 0.00 36.12 3.42
4685 5568 2.173782 TCTCACCCTGTTTGGTTTGCTA 59.826 45.455 0.00 0.00 36.12 3.49
4686 5569 1.064017 TCTCACCCTGTTTGGTTTGCT 60.064 47.619 0.00 0.00 36.12 3.91
4687 5570 1.067060 GTCTCACCCTGTTTGGTTTGC 59.933 52.381 0.00 0.00 36.12 3.68
4688 5571 2.654863 AGTCTCACCCTGTTTGGTTTG 58.345 47.619 0.00 0.00 36.12 2.93
4689 5572 3.382083 AAGTCTCACCCTGTTTGGTTT 57.618 42.857 0.00 0.00 36.12 3.27
4690 5573 3.382083 AAAGTCTCACCCTGTTTGGTT 57.618 42.857 0.00 0.00 36.12 3.67
4691 5574 3.382083 AAAAGTCTCACCCTGTTTGGT 57.618 42.857 0.00 0.00 39.96 3.67
4719 5602 7.200455 GTGCTTCTAAGGACTTTTAGCAAAAA 58.800 34.615 7.07 0.00 43.15 1.94
4720 5603 6.238925 GGTGCTTCTAAGGACTTTTAGCAAAA 60.239 38.462 13.12 0.00 45.42 2.44
4721 5604 5.240844 GGTGCTTCTAAGGACTTTTAGCAAA 59.759 40.000 13.12 0.00 45.42 3.68
4722 5605 4.760204 GGTGCTTCTAAGGACTTTTAGCAA 59.240 41.667 13.12 1.75 45.42 3.91
4723 5606 4.041691 AGGTGCTTCTAAGGACTTTTAGCA 59.958 41.667 13.12 9.74 45.42 3.49
4724 5607 4.580868 AGGTGCTTCTAAGGACTTTTAGC 58.419 43.478 13.12 0.00 45.42 3.09
4725 5608 5.046231 AGGAGGTGCTTCTAAGGACTTTTAG 60.046 44.000 13.12 0.00 45.42 1.85
4726 5609 4.844655 AGGAGGTGCTTCTAAGGACTTTTA 59.155 41.667 13.12 0.00 45.42 1.52
4727 5610 3.653352 AGGAGGTGCTTCTAAGGACTTTT 59.347 43.478 13.12 1.47 45.42 2.27
4728 5611 3.252351 AGGAGGTGCTTCTAAGGACTTT 58.748 45.455 13.12 3.63 45.42 2.66
4729 5612 2.909217 AGGAGGTGCTTCTAAGGACTT 58.091 47.619 13.12 6.52 45.42 3.01
4730 5613 2.632763 AGGAGGTGCTTCTAAGGACT 57.367 50.000 13.12 1.24 45.42 3.85
4731 5614 4.820894 TTAAGGAGGTGCTTCTAAGGAC 57.179 45.455 5.86 5.86 45.39 3.85
4732 5615 5.309806 ACTTTTAAGGAGGTGCTTCTAAGGA 59.690 40.000 8.88 0.00 0.00 3.36
4733 5616 5.561679 ACTTTTAAGGAGGTGCTTCTAAGG 58.438 41.667 8.88 1.04 0.00 2.69
4734 5617 6.468543 AGACTTTTAAGGAGGTGCTTCTAAG 58.531 40.000 0.00 0.00 0.00 2.18
4735 5618 6.435292 AGACTTTTAAGGAGGTGCTTCTAA 57.565 37.500 0.00 0.00 0.00 2.10
4736 5619 6.435292 AAGACTTTTAAGGAGGTGCTTCTA 57.565 37.500 0.00 0.00 0.00 2.10
4737 5620 4.984146 AGACTTTTAAGGAGGTGCTTCT 57.016 40.909 0.00 0.00 0.00 2.85
4738 5621 6.392625 AAAAGACTTTTAAGGAGGTGCTTC 57.607 37.500 11.51 0.00 0.00 3.86
4739 5622 6.379988 TGAAAAAGACTTTTAAGGAGGTGCTT 59.620 34.615 13.45 0.00 34.83 3.91
4740 5623 5.891551 TGAAAAAGACTTTTAAGGAGGTGCT 59.108 36.000 13.45 0.00 34.83 4.40
4741 5624 6.144078 TGAAAAAGACTTTTAAGGAGGTGC 57.856 37.500 13.45 0.00 34.83 5.01
4742 5625 8.996024 TTTTGAAAAAGACTTTTAAGGAGGTG 57.004 30.769 13.45 0.00 34.83 4.00
4743 5626 9.653287 CTTTTTGAAAAAGACTTTTAAGGAGGT 57.347 29.630 22.34 0.00 34.83 3.85
4744 5627 9.653287 ACTTTTTGAAAAAGACTTTTAAGGAGG 57.347 29.630 30.55 6.26 34.83 4.30
4746 5629 9.647797 GGACTTTTTGAAAAAGACTTTTAAGGA 57.352 29.630 30.55 0.00 34.83 3.36
4747 5630 9.653287 AGGACTTTTTGAAAAAGACTTTTAAGG 57.347 29.630 30.55 7.38 34.83 2.69
4751 5634 9.031537 TCCTAGGACTTTTTGAAAAAGACTTTT 57.968 29.630 30.55 18.00 37.46 2.27
4752 5635 8.589701 TCCTAGGACTTTTTGAAAAAGACTTT 57.410 30.769 30.55 19.85 0.00 2.66
4753 5636 8.467598 GTTCCTAGGACTTTTTGAAAAAGACTT 58.532 33.333 30.55 23.72 0.00 3.01
4754 5637 7.834681 AGTTCCTAGGACTTTTTGAAAAAGACT 59.165 33.333 30.55 26.69 0.00 3.24
4755 5638 7.997482 AGTTCCTAGGACTTTTTGAAAAAGAC 58.003 34.615 30.55 24.86 0.00 3.01
4756 5639 9.338622 CTAGTTCCTAGGACTTTTTGAAAAAGA 57.661 33.333 30.55 12.07 31.03 2.52
4757 5640 9.338622 TCTAGTTCCTAGGACTTTTTGAAAAAG 57.661 33.333 24.36 24.36 35.03 2.27
4758 5641 9.689501 TTCTAGTTCCTAGGACTTTTTGAAAAA 57.310 29.630 12.22 2.83 35.03 1.94
4759 5642 9.689501 TTTCTAGTTCCTAGGACTTTTTGAAAA 57.310 29.630 12.22 2.65 35.03 2.29
4760 5643 9.689501 TTTTCTAGTTCCTAGGACTTTTTGAAA 57.310 29.630 12.22 13.80 35.03 2.69
4761 5644 9.689501 TTTTTCTAGTTCCTAGGACTTTTTGAA 57.310 29.630 12.22 8.74 35.03 2.69
4762 5645 9.338622 CTTTTTCTAGTTCCTAGGACTTTTTGA 57.661 33.333 12.22 2.72 35.03 2.69
4763 5646 9.121658 ACTTTTTCTAGTTCCTAGGACTTTTTG 57.878 33.333 12.22 0.18 35.03 2.44
4764 5647 9.339850 GACTTTTTCTAGTTCCTAGGACTTTTT 57.660 33.333 12.22 0.00 35.03 1.94
4765 5648 8.491958 TGACTTTTTCTAGTTCCTAGGACTTTT 58.508 33.333 12.22 0.00 35.03 2.27
4766 5649 8.030913 TGACTTTTTCTAGTTCCTAGGACTTT 57.969 34.615 12.22 2.37 35.03 2.66
4767 5650 7.613551 TGACTTTTTCTAGTTCCTAGGACTT 57.386 36.000 12.22 5.14 35.03 3.01
4768 5651 7.800300 ATGACTTTTTCTAGTTCCTAGGACT 57.200 36.000 12.22 14.28 35.03 3.85
4769 5652 8.198778 CCTATGACTTTTTCTAGTTCCTAGGAC 58.801 40.741 12.22 7.12 35.03 3.85
4770 5653 8.120538 TCCTATGACTTTTTCTAGTTCCTAGGA 58.879 37.037 7.62 7.62 35.03 2.94
4771 5654 8.198778 GTCCTATGACTTTTTCTAGTTCCTAGG 58.801 40.741 0.82 0.82 38.53 3.02
4788 5671 6.100668 GTGTTTGGTTCTCTAGTCCTATGAC 58.899 44.000 0.00 0.00 42.09 3.06
4789 5672 5.187186 GGTGTTTGGTTCTCTAGTCCTATGA 59.813 44.000 0.00 0.00 0.00 2.15
4790 5673 5.046591 TGGTGTTTGGTTCTCTAGTCCTATG 60.047 44.000 0.00 0.00 0.00 2.23
4791 5674 5.046520 GTGGTGTTTGGTTCTCTAGTCCTAT 60.047 44.000 0.00 0.00 0.00 2.57
4792 5675 4.282703 GTGGTGTTTGGTTCTCTAGTCCTA 59.717 45.833 0.00 0.00 0.00 2.94
4793 5676 3.071167 GTGGTGTTTGGTTCTCTAGTCCT 59.929 47.826 0.00 0.00 0.00 3.85
4794 5677 3.400255 GTGGTGTTTGGTTCTCTAGTCC 58.600 50.000 0.00 0.00 0.00 3.85
4795 5678 3.071167 AGGTGGTGTTTGGTTCTCTAGTC 59.929 47.826 0.00 0.00 0.00 2.59
4796 5679 3.046374 AGGTGGTGTTTGGTTCTCTAGT 58.954 45.455 0.00 0.00 0.00 2.57
4797 5680 3.771577 AGGTGGTGTTTGGTTCTCTAG 57.228 47.619 0.00 0.00 0.00 2.43
4798 5681 4.657039 ACTAAGGTGGTGTTTGGTTCTCTA 59.343 41.667 0.00 0.00 0.00 2.43
4799 5682 3.458487 ACTAAGGTGGTGTTTGGTTCTCT 59.542 43.478 0.00 0.00 0.00 3.10
4800 5683 3.816994 ACTAAGGTGGTGTTTGGTTCTC 58.183 45.455 0.00 0.00 0.00 2.87
4801 5684 3.945640 ACTAAGGTGGTGTTTGGTTCT 57.054 42.857 0.00 0.00 0.00 3.01
4802 5685 4.204799 AGAACTAAGGTGGTGTTTGGTTC 58.795 43.478 5.63 5.63 41.96 3.62
4803 5686 4.245251 AGAACTAAGGTGGTGTTTGGTT 57.755 40.909 0.00 0.00 31.79 3.67
4804 5687 3.945640 AGAACTAAGGTGGTGTTTGGT 57.054 42.857 0.00 0.00 0.00 3.67
4805 5688 5.592104 AAAAGAACTAAGGTGGTGTTTGG 57.408 39.130 0.00 0.00 0.00 3.28
4806 5689 7.497909 TCTCTAAAAGAACTAAGGTGGTGTTTG 59.502 37.037 0.00 0.00 0.00 2.93
4807 5690 7.571025 TCTCTAAAAGAACTAAGGTGGTGTTT 58.429 34.615 0.00 0.00 0.00 2.83
4808 5691 7.070821 TCTCTCTAAAAGAACTAAGGTGGTGTT 59.929 37.037 0.00 0.00 32.23 3.32
4809 5692 6.553852 TCTCTCTAAAAGAACTAAGGTGGTGT 59.446 38.462 0.00 0.00 32.23 4.16
4810 5693 6.994221 TCTCTCTAAAAGAACTAAGGTGGTG 58.006 40.000 0.00 0.00 32.23 4.17
4811 5694 7.613551 TTCTCTCTAAAAGAACTAAGGTGGT 57.386 36.000 0.00 0.00 32.23 4.16
4812 5695 7.550906 CCATTCTCTCTAAAAGAACTAAGGTGG 59.449 40.741 0.00 0.00 35.68 4.61
4813 5696 8.314751 TCCATTCTCTCTAAAAGAACTAAGGTG 58.685 37.037 0.00 0.00 35.68 4.00
4814 5697 8.437274 TCCATTCTCTCTAAAAGAACTAAGGT 57.563 34.615 0.00 0.00 35.68 3.50
4956 5896 6.620877 TCAGGGTACTTTACAGATCACATT 57.379 37.500 0.00 0.00 0.00 2.71
4971 5911 6.541934 ACCATTTCTAGTAGTTCAGGGTAC 57.458 41.667 0.00 0.00 0.00 3.34
5356 6309 1.601419 CGGCGGAGAAGTAGGGTCAA 61.601 60.000 0.00 0.00 0.00 3.18
5364 6317 3.041940 CAAACGCGGCGGAGAAGT 61.042 61.111 27.37 0.41 0.00 3.01
5429 6382 2.115291 GGGAATCGCAGCAGAACCC 61.115 63.158 12.89 12.89 35.14 4.11
5448 6401 0.180878 AGACGACCGTTCCCCAAAAA 59.819 50.000 0.00 0.00 0.00 1.94
5472 6425 1.899814 AGAAGGCACTACCACGATGAA 59.100 47.619 0.00 0.00 43.14 2.57
5473 6426 1.476891 GAGAAGGCACTACCACGATGA 59.523 52.381 0.00 0.00 43.14 2.92
5495 6449 0.392193 AAGAGGAATGCTGCGAGGTG 60.392 55.000 0.00 0.00 0.00 4.00
5504 6458 0.383231 CATTGCCCGAAGAGGAATGC 59.617 55.000 0.00 0.00 45.00 3.56
5520 6474 1.141019 CCGTCCATCCGTCGTCATT 59.859 57.895 0.00 0.00 0.00 2.57
5549 6503 2.452813 CGCGCGCCAGTCTTTACAT 61.453 57.895 27.72 0.00 0.00 2.29
5550 6504 3.109547 CGCGCGCCAGTCTTTACA 61.110 61.111 27.72 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.