Multiple sequence alignment - TraesCS1D01G143600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G143600 chr1D 100.000 3114 0 0 471 3584 199278628 199275515 0.000000e+00 5751.0
1 TraesCS1D01G143600 chr1D 87.324 426 53 1 3160 3584 109718766 109718341 1.500000e-133 486.0
2 TraesCS1D01G143600 chr1D 71.132 1254 306 41 1359 2581 402294488 402295716 3.550000e-65 259.0
3 TraesCS1D01G143600 chr1D 100.000 132 0 0 1 132 199279098 199278967 9.940000e-61 244.0
4 TraesCS1D01G143600 chr1A 96.097 2024 60 9 742 2750 250444614 250442595 0.000000e+00 3282.0
5 TraesCS1D01G143600 chr1A 93.796 274 14 2 471 741 250444945 250444672 3.330000e-110 409.0
6 TraesCS1D01G143600 chr1A 90.610 213 12 6 2744 2948 250442460 250442248 3.520000e-70 276.0
7 TraesCS1D01G143600 chr1A 89.600 125 9 2 1 121 250445287 250445163 4.790000e-34 156.0
8 TraesCS1D01G143600 chr1B 96.420 1983 58 7 897 2868 279495800 279493820 0.000000e+00 3256.0
9 TraesCS1D01G143600 chr3B 92.701 685 47 3 978 1662 104270397 104271078 0.000000e+00 985.0
10 TraesCS1D01G143600 chr3B 72.568 1028 233 39 1549 2562 10963250 10962258 1.260000e-74 291.0
11 TraesCS1D01G143600 chr3B 75.381 394 82 11 2198 2585 11065990 11065606 3.680000e-40 176.0
12 TraesCS1D01G143600 chr5D 90.762 433 37 3 3154 3584 504089294 504088863 3.100000e-160 575.0
13 TraesCS1D01G143600 chr4A 85.647 425 59 2 3161 3584 541367564 541367987 2.540000e-121 446.0
14 TraesCS1D01G143600 chr3A 71.997 1232 278 51 1353 2562 11948705 11947519 5.820000e-78 302.0
15 TraesCS1D01G143600 chr3A 83.951 81 13 0 3501 3581 556453614 556453534 1.070000e-10 78.7
16 TraesCS1D01G143600 chr7D 80.729 384 73 1 3202 3584 392754786 392755169 7.520000e-77 298.0
17 TraesCS1D01G143600 chr3D 71.080 1231 291 48 1353 2562 8935902 8937088 1.290000e-59 241.0
18 TraesCS1D01G143600 chr3D 75.248 404 85 14 2195 2590 8913062 8913458 1.020000e-40 178.0
19 TraesCS1D01G143600 chr3D 77.778 288 56 7 2198 2481 8928284 8928567 1.710000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G143600 chr1D 199275515 199279098 3583 True 2997.50 5751 100.00000 1 3584 2 chr1D.!!$R2 3583
1 TraesCS1D01G143600 chr1D 402294488 402295716 1228 False 259.00 259 71.13200 1359 2581 1 chr1D.!!$F1 1222
2 TraesCS1D01G143600 chr1A 250442248 250445287 3039 True 1030.75 3282 92.52575 1 2948 4 chr1A.!!$R1 2947
3 TraesCS1D01G143600 chr1B 279493820 279495800 1980 True 3256.00 3256 96.42000 897 2868 1 chr1B.!!$R1 1971
4 TraesCS1D01G143600 chr3B 104270397 104271078 681 False 985.00 985 92.70100 978 1662 1 chr3B.!!$F1 684
5 TraesCS1D01G143600 chr3B 10962258 10963250 992 True 291.00 291 72.56800 1549 2562 1 chr3B.!!$R1 1013
6 TraesCS1D01G143600 chr3A 11947519 11948705 1186 True 302.00 302 71.99700 1353 2562 1 chr3A.!!$R1 1209
7 TraesCS1D01G143600 chr3D 8935902 8937088 1186 False 241.00 241 71.08000 1353 2562 1 chr3D.!!$F3 1209

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
723 731 0.170339 AAGTGCGCGGCCTTATTTTC 59.830 50.0 8.83 0.0 0.00 2.29 F
892 963 0.388294 GCGTATGTCACCTAGGGTCC 59.612 60.0 14.81 0.0 31.02 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2445 2544 3.147595 CTCGGGATGAGCCGGACA 61.148 66.667 5.05 4.62 40.69 4.02 R
2762 3004 1.517242 GCCGATCATTTCCCTAGCAG 58.483 55.000 0.00 0.00 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.032634 TCAAACCGCTGCCATCGAC 61.033 57.895 0.00 0.00 0.00 4.20
60 61 3.444818 AAGGCCAGGGAAAACGCCA 62.445 57.895 5.01 0.00 44.18 5.69
62 63 4.038080 GCCAGGGAAAACGCCACG 62.038 66.667 0.00 0.00 0.00 4.94
83 84 3.842923 CACGGAGATCCAGCGGCT 61.843 66.667 0.00 0.00 35.14 5.52
87 88 1.810606 CGGAGATCCAGCGGCTACAT 61.811 60.000 0.26 0.00 35.14 2.29
92 93 0.394565 ATCCAGCGGCTACATCTTCC 59.605 55.000 0.26 0.00 0.00 3.46
126 131 4.411993 GCAGTCAGCCTAGTTTCTTTTC 57.588 45.455 0.00 0.00 37.23 2.29
127 132 4.068599 GCAGTCAGCCTAGTTTCTTTTCT 58.931 43.478 0.00 0.00 37.23 2.52
128 133 4.517075 GCAGTCAGCCTAGTTTCTTTTCTT 59.483 41.667 0.00 0.00 37.23 2.52
129 134 5.009110 GCAGTCAGCCTAGTTTCTTTTCTTT 59.991 40.000 0.00 0.00 37.23 2.52
130 135 6.433766 CAGTCAGCCTAGTTTCTTTTCTTTG 58.566 40.000 0.00 0.00 0.00 2.77
131 136 5.532779 AGTCAGCCTAGTTTCTTTTCTTTGG 59.467 40.000 0.00 0.00 0.00 3.28
569 574 8.703378 ATCAAAAATATCCTGGAGAGATTTCC 57.297 34.615 1.52 0.00 43.85 3.13
614 619 4.645136 TCAAGCACGGTCTACAAGATATCT 59.355 41.667 0.00 0.00 0.00 1.98
624 629 7.361713 CGGTCTACAAGATATCTGATTCTCCTC 60.362 44.444 5.86 0.00 0.00 3.71
626 631 8.730680 GTCTACAAGATATCTGATTCTCCTCTC 58.269 40.741 5.86 0.00 0.00 3.20
645 650 8.437274 TCCTCTCTTTTTACAGTAGGAAAGAT 57.563 34.615 15.94 0.00 37.46 2.40
687 693 3.057806 CGGTTTATGTGGTTTCCTTGTCC 60.058 47.826 0.00 0.00 0.00 4.02
692 698 1.843851 TGTGGTTTCCTTGTCCAGAGT 59.156 47.619 0.00 0.00 31.54 3.24
694 700 2.123589 TGGTTTCCTTGTCCAGAGTGA 58.876 47.619 0.00 0.00 0.00 3.41
698 704 1.930251 TCCTTGTCCAGAGTGAGAGG 58.070 55.000 0.00 0.00 0.00 3.69
711 719 3.378399 GAGAGGGGGAGAAGTGCGC 62.378 68.421 0.00 0.00 0.00 6.09
719 727 1.521681 GAGAAGTGCGCGGCCTTAT 60.522 57.895 8.83 1.61 0.00 1.73
723 731 0.170339 AAGTGCGCGGCCTTATTTTC 59.830 50.000 8.83 0.00 0.00 2.29
840 909 4.002006 TGGAGGGTCCAAAGTGCT 57.998 55.556 0.00 0.00 45.00 4.40
841 910 1.761174 TGGAGGGTCCAAAGTGCTC 59.239 57.895 0.00 0.00 45.00 4.26
843 912 1.276622 GGAGGGTCCAAAGTGCTCTA 58.723 55.000 0.00 0.00 36.28 2.43
846 915 3.097614 GAGGGTCCAAAGTGCTCTACTA 58.902 50.000 0.00 0.00 39.18 1.82
852 923 5.122396 GGTCCAAAGTGCTCTACTATTTGTG 59.878 44.000 0.00 0.00 39.18 3.33
892 963 0.388294 GCGTATGTCACCTAGGGTCC 59.612 60.000 14.81 0.00 31.02 4.46
1241 1312 2.880879 CAGCGTCACCATCGACCG 60.881 66.667 0.00 0.00 31.91 4.79
1257 1328 4.065281 CGAAACTCCGGACGGGCT 62.065 66.667 11.27 0.00 34.94 5.19
1283 1354 3.785859 GGTGATGCTGGCCGAGGA 61.786 66.667 0.00 0.00 0.00 3.71
1339 1410 2.499205 CCAATCGGAGCACGGCTA 59.501 61.111 0.00 0.00 39.88 3.93
1629 1714 2.366167 AAGGATGCCTCCCTCGCT 60.366 61.111 4.15 0.00 43.21 4.93
2445 2544 2.041265 AGGATGCGGGAGGAGGTT 59.959 61.111 0.00 0.00 0.00 3.50
2741 2840 4.858692 GTCGTAACCGTGTAATCAGCTAAA 59.141 41.667 0.00 0.00 35.01 1.85
2758 3000 3.732721 GCTAAAGCTTTGTTGAGCACAAG 59.267 43.478 22.02 7.84 46.37 3.16
2762 3004 3.774066 AGCTTTGTTGAGCACAAGAAAC 58.226 40.909 13.77 11.17 46.37 2.78
2787 3029 1.153249 GGAAATGATCGGCCGACCA 60.153 57.895 33.75 30.77 34.57 4.02
2889 3136 1.066430 TGTCCCCGCTCATTCTACAAC 60.066 52.381 0.00 0.00 0.00 3.32
2911 3158 9.450807 ACAACTGTTCTTTTGAAATAGATTTCG 57.549 29.630 9.77 0.00 46.92 3.46
2912 3159 8.420189 CAACTGTTCTTTTGAAATAGATTTCGC 58.580 33.333 9.77 0.00 46.92 4.70
2913 3160 7.875971 ACTGTTCTTTTGAAATAGATTTCGCT 58.124 30.769 9.77 0.00 46.92 4.93
2953 3201 9.567848 AAAGCAAAGATTATAAATACACAACCG 57.432 29.630 0.00 0.00 0.00 4.44
2954 3202 8.500753 AGCAAAGATTATAAATACACAACCGA 57.499 30.769 0.00 0.00 0.00 4.69
2955 3203 8.952278 AGCAAAGATTATAAATACACAACCGAA 58.048 29.630 0.00 0.00 0.00 4.30
2956 3204 9.006215 GCAAAGATTATAAATACACAACCGAAC 57.994 33.333 0.00 0.00 0.00 3.95
2967 3215 5.811399 ACACAACCGAACAATATATGTGG 57.189 39.130 7.76 0.00 42.99 4.17
2968 3216 5.250200 ACACAACCGAACAATATATGTGGT 58.750 37.500 7.76 0.00 42.99 4.16
2969 3217 5.123186 ACACAACCGAACAATATATGTGGTG 59.877 40.000 7.76 5.14 42.99 4.17
2970 3218 5.352846 CACAACCGAACAATATATGTGGTGA 59.647 40.000 1.59 0.00 42.99 4.02
2971 3219 5.584649 ACAACCGAACAATATATGTGGTGAG 59.415 40.000 0.00 0.00 42.99 3.51
2972 3220 5.607939 ACCGAACAATATATGTGGTGAGA 57.392 39.130 0.00 0.00 42.99 3.27
2973 3221 5.984725 ACCGAACAATATATGTGGTGAGAA 58.015 37.500 0.00 0.00 42.99 2.87
2974 3222 6.411376 ACCGAACAATATATGTGGTGAGAAA 58.589 36.000 0.00 0.00 42.99 2.52
2975 3223 6.538742 ACCGAACAATATATGTGGTGAGAAAG 59.461 38.462 0.00 0.00 42.99 2.62
2976 3224 6.422223 CGAACAATATATGTGGTGAGAAAGC 58.578 40.000 0.00 0.00 42.99 3.51
2977 3225 6.511767 CGAACAATATATGTGGTGAGAAAGCC 60.512 42.308 0.00 0.00 42.99 4.35
2978 3226 6.006275 ACAATATATGTGGTGAGAAAGCCT 57.994 37.500 0.00 0.00 41.93 4.58
2979 3227 6.058183 ACAATATATGTGGTGAGAAAGCCTC 58.942 40.000 0.00 0.00 41.93 4.70
2980 3228 6.352996 ACAATATATGTGGTGAGAAAGCCTCA 60.353 38.462 0.00 0.00 44.52 3.86
2981 3229 7.800824 ACAATATATGTGGTGAGAAAGCCTCAA 60.801 37.037 0.00 0.00 46.43 3.02
2989 3237 3.715628 GAGAAAGCCTCAAACAAAGCA 57.284 42.857 0.00 0.00 41.58 3.91
2990 3238 3.636381 GAGAAAGCCTCAAACAAAGCAG 58.364 45.455 0.00 0.00 41.58 4.24
2991 3239 2.363359 AGAAAGCCTCAAACAAAGCAGG 59.637 45.455 0.00 0.00 0.00 4.85
2992 3240 1.043022 AAGCCTCAAACAAAGCAGGG 58.957 50.000 0.00 0.00 0.00 4.45
2993 3241 1.005748 GCCTCAAACAAAGCAGGGC 60.006 57.895 0.00 0.00 0.00 5.19
2994 3242 1.466851 GCCTCAAACAAAGCAGGGCT 61.467 55.000 0.00 0.00 42.56 5.19
2995 3243 0.600057 CCTCAAACAAAGCAGGGCTC 59.400 55.000 0.00 0.00 38.25 4.70
2996 3244 0.600057 CTCAAACAAAGCAGGGCTCC 59.400 55.000 0.00 0.00 38.25 4.70
2997 3245 0.106268 TCAAACAAAGCAGGGCTCCA 60.106 50.000 0.00 0.00 38.25 3.86
2998 3246 0.752054 CAAACAAAGCAGGGCTCCAA 59.248 50.000 0.00 0.00 38.25 3.53
2999 3247 1.043022 AAACAAAGCAGGGCTCCAAG 58.957 50.000 0.00 0.00 38.25 3.61
3000 3248 0.185901 AACAAAGCAGGGCTCCAAGA 59.814 50.000 0.00 0.00 38.25 3.02
3001 3249 0.185901 ACAAAGCAGGGCTCCAAGAA 59.814 50.000 0.00 0.00 38.25 2.52
3002 3250 1.331214 CAAAGCAGGGCTCCAAGAAA 58.669 50.000 0.00 0.00 38.25 2.52
3003 3251 1.688197 CAAAGCAGGGCTCCAAGAAAA 59.312 47.619 0.00 0.00 38.25 2.29
3004 3252 2.301009 CAAAGCAGGGCTCCAAGAAAAT 59.699 45.455 0.00 0.00 38.25 1.82
3005 3253 1.553706 AGCAGGGCTCCAAGAAAATG 58.446 50.000 0.00 0.00 30.62 2.32
3006 3254 0.533951 GCAGGGCTCCAAGAAAATGG 59.466 55.000 0.00 0.00 42.12 3.16
3008 3256 1.821136 CAGGGCTCCAAGAAAATGGAC 59.179 52.381 0.00 0.00 44.52 4.02
3009 3257 1.428912 AGGGCTCCAAGAAAATGGACA 59.571 47.619 0.00 0.00 44.52 4.02
3010 3258 2.158325 AGGGCTCCAAGAAAATGGACAA 60.158 45.455 0.00 0.00 44.52 3.18
3011 3259 2.833943 GGGCTCCAAGAAAATGGACAAT 59.166 45.455 0.00 0.00 44.52 2.71
3012 3260 4.023291 GGGCTCCAAGAAAATGGACAATA 58.977 43.478 0.00 0.00 44.52 1.90
3013 3261 4.098501 GGGCTCCAAGAAAATGGACAATAG 59.901 45.833 0.00 0.00 44.52 1.73
3014 3262 4.098501 GGCTCCAAGAAAATGGACAATAGG 59.901 45.833 0.00 0.00 44.52 2.57
3015 3263 4.949856 GCTCCAAGAAAATGGACAATAGGA 59.050 41.667 0.00 0.00 44.52 2.94
3016 3264 5.418840 GCTCCAAGAAAATGGACAATAGGAA 59.581 40.000 0.00 0.00 44.52 3.36
3017 3265 6.405176 GCTCCAAGAAAATGGACAATAGGAAG 60.405 42.308 0.00 0.00 44.52 3.46
3018 3266 6.789268 TCCAAGAAAATGGACAATAGGAAGA 58.211 36.000 0.00 0.00 44.52 2.87
3019 3267 6.659242 TCCAAGAAAATGGACAATAGGAAGAC 59.341 38.462 0.00 0.00 44.52 3.01
3020 3268 6.127619 CCAAGAAAATGGACAATAGGAAGACC 60.128 42.308 0.00 0.00 43.54 3.85
3021 3269 8.235607 CCAAGAAAATGGACAATAGGAAGACCT 61.236 40.741 0.00 0.00 45.31 3.85
3034 3282 4.998051 AGGAAGACCTAAAAGCATTTCCA 58.002 39.130 0.00 0.00 45.83 3.53
3035 3283 5.393866 AGGAAGACCTAAAAGCATTTCCAA 58.606 37.500 0.00 0.00 45.83 3.53
3036 3284 5.243954 AGGAAGACCTAAAAGCATTTCCAAC 59.756 40.000 0.00 0.00 45.83 3.77
3037 3285 5.010617 GGAAGACCTAAAAGCATTTCCAACA 59.989 40.000 0.00 0.00 37.28 3.33
3038 3286 6.295292 GGAAGACCTAAAAGCATTTCCAACAT 60.295 38.462 0.00 0.00 37.28 2.71
3039 3287 7.093945 GGAAGACCTAAAAGCATTTCCAACATA 60.094 37.037 0.00 0.00 37.28 2.29
3040 3288 7.396540 AGACCTAAAAGCATTTCCAACATAG 57.603 36.000 0.00 0.00 37.28 2.23
3041 3289 6.378280 AGACCTAAAAGCATTTCCAACATAGG 59.622 38.462 0.00 0.00 37.28 2.57
3042 3290 5.105351 ACCTAAAAGCATTTCCAACATAGGC 60.105 40.000 0.00 0.00 37.28 3.93
3043 3291 3.508744 AAAGCATTTCCAACATAGGCG 57.491 42.857 0.00 0.00 27.08 5.52
3044 3292 0.740737 AGCATTTCCAACATAGGCGC 59.259 50.000 0.00 0.00 0.00 6.53
3045 3293 0.740737 GCATTTCCAACATAGGCGCT 59.259 50.000 7.64 0.00 0.00 5.92
3046 3294 1.946768 GCATTTCCAACATAGGCGCTA 59.053 47.619 7.64 0.00 0.00 4.26
3047 3295 2.357637 GCATTTCCAACATAGGCGCTAA 59.642 45.455 7.64 0.00 0.00 3.09
3048 3296 3.181491 GCATTTCCAACATAGGCGCTAAA 60.181 43.478 7.64 0.00 0.00 1.85
3049 3297 4.499696 GCATTTCCAACATAGGCGCTAAAT 60.500 41.667 7.64 0.00 0.00 1.40
3050 3298 5.278266 GCATTTCCAACATAGGCGCTAAATA 60.278 40.000 7.64 0.00 0.00 1.40
3051 3299 6.734137 CATTTCCAACATAGGCGCTAAATAA 58.266 36.000 7.64 0.00 0.00 1.40
3052 3300 6.371809 TTTCCAACATAGGCGCTAAATAAG 57.628 37.500 7.64 0.00 0.00 1.73
3060 3308 3.011583 GCTAAATAAGCCGCGCGT 58.988 55.556 29.95 13.36 46.25 6.01
3061 3309 1.083593 GCTAAATAAGCCGCGCGTC 60.084 57.895 29.95 17.96 46.25 5.19
3062 3310 1.488261 GCTAAATAAGCCGCGCGTCT 61.488 55.000 29.95 20.55 46.25 4.18
3063 3311 0.229753 CTAAATAAGCCGCGCGTCTG 59.770 55.000 29.95 14.97 0.00 3.51
3064 3312 0.179132 TAAATAAGCCGCGCGTCTGA 60.179 50.000 29.95 16.26 0.00 3.27
3065 3313 1.017177 AAATAAGCCGCGCGTCTGAA 61.017 50.000 29.95 14.04 0.00 3.02
3066 3314 1.017177 AATAAGCCGCGCGTCTGAAA 61.017 50.000 29.95 11.24 0.00 2.69
3067 3315 1.017177 ATAAGCCGCGCGTCTGAAAA 61.017 50.000 29.95 8.50 0.00 2.29
3068 3316 1.222766 TAAGCCGCGCGTCTGAAAAA 61.223 50.000 29.95 2.40 0.00 1.94
3085 3333 1.971792 AAAACCGGATTTTTAGCGCG 58.028 45.000 9.46 0.00 37.18 6.86
3086 3334 0.455464 AAACCGGATTTTTAGCGCGC 60.455 50.000 26.66 26.66 0.00 6.86
3087 3335 2.350760 CCGGATTTTTAGCGCGCG 60.351 61.111 28.44 28.44 0.00 6.86
3088 3336 3.011240 CGGATTTTTAGCGCGCGC 61.011 61.111 45.10 45.10 42.33 6.86
3107 3355 3.418675 GACCGAATCGACAGCTTCA 57.581 52.632 3.36 0.00 0.00 3.02
3108 3356 1.272781 GACCGAATCGACAGCTTCAG 58.727 55.000 3.36 0.00 0.00 3.02
3109 3357 0.737715 ACCGAATCGACAGCTTCAGC 60.738 55.000 3.36 0.00 42.49 4.26
3110 3358 0.737367 CCGAATCGACAGCTTCAGCA 60.737 55.000 3.36 0.00 45.16 4.41
3111 3359 0.644331 CGAATCGACAGCTTCAGCAG 59.356 55.000 0.00 0.00 45.16 4.24
3112 3360 1.733718 CGAATCGACAGCTTCAGCAGA 60.734 52.381 0.00 0.00 45.16 4.26
3113 3361 1.658095 GAATCGACAGCTTCAGCAGAC 59.342 52.381 0.75 0.00 45.16 3.51
3114 3362 0.605083 ATCGACAGCTTCAGCAGACA 59.395 50.000 0.75 0.00 45.16 3.41
3115 3363 0.605083 TCGACAGCTTCAGCAGACAT 59.395 50.000 0.75 0.00 45.16 3.06
3116 3364 0.720027 CGACAGCTTCAGCAGACATG 59.280 55.000 0.75 0.00 45.16 3.21
3128 3376 0.636733 CAGACATGCAAAAATCGCGC 59.363 50.000 0.00 0.00 0.00 6.86
3129 3377 0.794229 AGACATGCAAAAATCGCGCG 60.794 50.000 26.76 26.76 0.00 6.86
3130 3378 2.314033 CATGCAAAAATCGCGCGC 59.686 55.556 27.95 23.91 0.00 6.86
3131 3379 3.239648 ATGCAAAAATCGCGCGCG 61.240 55.556 44.84 44.84 41.35 6.86
3149 3397 3.485110 CGCTGCTCGCCAAACATA 58.515 55.556 0.00 0.00 34.21 2.29
3150 3398 1.793581 CGCTGCTCGCCAAACATAA 59.206 52.632 0.00 0.00 34.21 1.90
3151 3399 0.521242 CGCTGCTCGCCAAACATAAC 60.521 55.000 0.00 0.00 34.21 1.89
3152 3400 0.521242 GCTGCTCGCCAAACATAACG 60.521 55.000 0.00 0.00 0.00 3.18
3153 3401 0.096976 CTGCTCGCCAAACATAACGG 59.903 55.000 0.00 0.00 0.00 4.44
3154 3402 1.226295 GCTCGCCAAACATAACGGC 60.226 57.895 0.00 0.00 42.64 5.68
3155 3403 1.917782 GCTCGCCAAACATAACGGCA 61.918 55.000 0.00 0.00 46.60 5.69
3156 3404 0.732571 CTCGCCAAACATAACGGCAT 59.267 50.000 0.00 0.00 46.60 4.40
3157 3405 1.132262 CTCGCCAAACATAACGGCATT 59.868 47.619 0.00 0.00 46.60 3.56
3158 3406 1.135546 TCGCCAAACATAACGGCATTG 60.136 47.619 0.00 0.00 46.60 2.82
3159 3407 0.998669 GCCAAACATAACGGCATTGC 59.001 50.000 0.00 0.00 45.52 3.56
3160 3408 1.671261 GCCAAACATAACGGCATTGCA 60.671 47.619 11.39 0.00 45.52 4.08
3161 3409 2.261345 CCAAACATAACGGCATTGCAG 58.739 47.619 11.39 9.27 0.00 4.41
3162 3410 2.094803 CCAAACATAACGGCATTGCAGA 60.095 45.455 15.82 0.00 0.00 4.26
3163 3411 2.916716 CAAACATAACGGCATTGCAGAC 59.083 45.455 15.82 0.00 0.00 3.51
3164 3412 0.726827 ACATAACGGCATTGCAGACG 59.273 50.000 15.82 9.78 0.00 4.18
3165 3413 0.589729 CATAACGGCATTGCAGACGC 60.590 55.000 15.82 0.00 39.24 5.19
3182 3430 3.847602 CAGAGCGCCCCCTGAGAG 61.848 72.222 14.54 0.00 32.37 3.20
3188 3436 4.120755 GCCCCCTGAGAGGCCTTG 62.121 72.222 6.77 0.00 43.76 3.61
3189 3437 2.612115 CCCCCTGAGAGGCCTTGT 60.612 66.667 6.77 0.00 32.73 3.16
3190 3438 2.673523 CCCCTGAGAGGCCTTGTG 59.326 66.667 6.77 0.00 32.73 3.33
3191 3439 2.045536 CCCTGAGAGGCCTTGTGC 60.046 66.667 6.77 0.00 40.16 4.57
3192 3440 2.435586 CCTGAGAGGCCTTGTGCG 60.436 66.667 6.77 0.00 42.61 5.34
3193 3441 2.659016 CTGAGAGGCCTTGTGCGA 59.341 61.111 6.77 0.00 42.61 5.10
3194 3442 1.739562 CTGAGAGGCCTTGTGCGAC 60.740 63.158 6.77 0.00 42.61 5.19
3195 3443 2.164865 CTGAGAGGCCTTGTGCGACT 62.165 60.000 6.77 0.00 42.61 4.18
3196 3444 1.004440 GAGAGGCCTTGTGCGACTT 60.004 57.895 6.77 0.00 42.61 3.01
3197 3445 1.004440 AGAGGCCTTGTGCGACTTC 60.004 57.895 6.77 0.00 42.61 3.01
3198 3446 1.301716 GAGGCCTTGTGCGACTTCA 60.302 57.895 6.77 0.00 42.61 3.02
3199 3447 1.294659 GAGGCCTTGTGCGACTTCAG 61.295 60.000 6.77 0.00 42.61 3.02
3200 3448 1.598130 GGCCTTGTGCGACTTCAGT 60.598 57.895 0.00 0.00 42.61 3.41
3201 3449 1.571460 GCCTTGTGCGACTTCAGTG 59.429 57.895 0.00 0.00 0.00 3.66
3202 3450 1.845809 GCCTTGTGCGACTTCAGTGG 61.846 60.000 0.00 0.00 0.00 4.00
3203 3451 0.532862 CCTTGTGCGACTTCAGTGGT 60.533 55.000 0.00 0.00 0.00 4.16
3204 3452 0.583438 CTTGTGCGACTTCAGTGGTG 59.417 55.000 0.00 0.00 0.00 4.17
3205 3453 0.813610 TTGTGCGACTTCAGTGGTGG 60.814 55.000 0.00 0.00 0.00 4.61
3206 3454 1.227556 GTGCGACTTCAGTGGTGGT 60.228 57.895 0.00 0.00 0.00 4.16
3207 3455 1.227527 TGCGACTTCAGTGGTGGTG 60.228 57.895 0.00 0.00 0.00 4.17
3208 3456 2.607892 GCGACTTCAGTGGTGGTGC 61.608 63.158 0.00 0.00 0.00 5.01
3209 3457 1.227527 CGACTTCAGTGGTGGTGCA 60.228 57.895 0.00 0.00 0.00 4.57
3210 3458 1.224069 CGACTTCAGTGGTGGTGCAG 61.224 60.000 0.00 0.00 0.00 4.41
3211 3459 1.510480 GACTTCAGTGGTGGTGCAGC 61.510 60.000 9.47 9.47 0.00 5.25
3212 3460 2.203337 TTCAGTGGTGGTGCAGCC 60.203 61.111 14.36 5.89 37.90 4.85
3213 3461 2.963928 CTTCAGTGGTGGTGCAGCCA 62.964 60.000 14.36 8.70 46.95 4.75
3249 3497 4.760047 CGGCCGTCAGGGTTGAGG 62.760 72.222 19.50 0.00 38.59 3.86
3250 3498 3.637273 GGCCGTCAGGGTTGAGGT 61.637 66.667 0.00 0.00 37.47 3.85
3251 3499 2.430367 GCCGTCAGGGTTGAGGTT 59.570 61.111 0.00 0.00 37.47 3.50
3252 3500 1.966451 GCCGTCAGGGTTGAGGTTG 60.966 63.158 0.00 0.00 37.47 3.77
3253 3501 1.302511 CCGTCAGGGTTGAGGTTGG 60.303 63.158 0.00 0.00 37.47 3.77
3254 3502 1.752198 CGTCAGGGTTGAGGTTGGA 59.248 57.895 0.00 0.00 35.12 3.53
3255 3503 0.602905 CGTCAGGGTTGAGGTTGGAC 60.603 60.000 0.00 0.00 35.12 4.02
3256 3504 0.765510 GTCAGGGTTGAGGTTGGACT 59.234 55.000 0.00 0.00 32.98 3.85
3257 3505 1.143073 GTCAGGGTTGAGGTTGGACTT 59.857 52.381 0.00 0.00 32.98 3.01
3258 3506 1.142870 TCAGGGTTGAGGTTGGACTTG 59.857 52.381 0.00 0.00 0.00 3.16
3259 3507 1.142870 CAGGGTTGAGGTTGGACTTGA 59.857 52.381 0.00 0.00 0.00 3.02
3260 3508 1.143073 AGGGTTGAGGTTGGACTTGAC 59.857 52.381 0.00 0.00 0.00 3.18
3261 3509 1.133915 GGGTTGAGGTTGGACTTGACA 60.134 52.381 0.00 0.00 0.00 3.58
3262 3510 2.489073 GGGTTGAGGTTGGACTTGACAT 60.489 50.000 0.00 0.00 0.00 3.06
3263 3511 2.814336 GGTTGAGGTTGGACTTGACATC 59.186 50.000 0.00 0.00 0.00 3.06
3264 3512 2.455674 TGAGGTTGGACTTGACATCG 57.544 50.000 0.00 0.00 29.75 3.84
3265 3513 1.691976 TGAGGTTGGACTTGACATCGT 59.308 47.619 0.00 0.00 29.75 3.73
3266 3514 2.104111 TGAGGTTGGACTTGACATCGTT 59.896 45.455 0.00 0.00 29.75 3.85
3267 3515 2.480419 GAGGTTGGACTTGACATCGTTG 59.520 50.000 0.00 0.00 0.00 4.10
3268 3516 1.069227 GGTTGGACTTGACATCGTTGC 60.069 52.381 0.00 0.00 0.00 4.17
3269 3517 1.601903 GTTGGACTTGACATCGTTGCA 59.398 47.619 0.00 0.00 0.00 4.08
3270 3518 1.511850 TGGACTTGACATCGTTGCAG 58.488 50.000 0.00 0.00 0.00 4.41
3271 3519 0.166814 GGACTTGACATCGTTGCAGC 59.833 55.000 0.00 0.00 0.00 5.25
3272 3520 1.151668 GACTTGACATCGTTGCAGCT 58.848 50.000 0.00 0.00 0.00 4.24
3273 3521 1.532868 GACTTGACATCGTTGCAGCTT 59.467 47.619 0.00 0.00 0.00 3.74
3274 3522 1.532868 ACTTGACATCGTTGCAGCTTC 59.467 47.619 0.00 0.00 0.00 3.86
3275 3523 1.532437 CTTGACATCGTTGCAGCTTCA 59.468 47.619 0.00 0.00 0.00 3.02
3276 3524 1.150827 TGACATCGTTGCAGCTTCAG 58.849 50.000 0.00 0.00 0.00 3.02
3277 3525 0.179205 GACATCGTTGCAGCTTCAGC 60.179 55.000 0.00 0.00 42.49 4.26
3278 3526 0.886043 ACATCGTTGCAGCTTCAGCA 60.886 50.000 0.75 0.00 45.16 4.41
3279 3527 0.453950 CATCGTTGCAGCTTCAGCAC 60.454 55.000 0.75 0.00 42.54 4.40
3280 3528 1.904852 ATCGTTGCAGCTTCAGCACG 61.905 55.000 4.48 4.48 42.54 5.34
3281 3529 2.428071 GTTGCAGCTTCAGCACGC 60.428 61.111 0.75 4.01 42.54 5.34
3282 3530 2.592574 TTGCAGCTTCAGCACGCT 60.593 55.556 12.74 0.00 42.54 5.07
3283 3531 2.188829 TTGCAGCTTCAGCACGCTT 61.189 52.632 12.74 0.00 42.54 4.68
3284 3532 2.121564 TTGCAGCTTCAGCACGCTTC 62.122 55.000 12.74 0.00 42.54 3.86
3285 3533 2.323580 GCAGCTTCAGCACGCTTCT 61.324 57.895 0.75 0.00 45.16 2.85
3286 3534 1.849976 GCAGCTTCAGCACGCTTCTT 61.850 55.000 0.75 0.00 45.16 2.52
3287 3535 0.110328 CAGCTTCAGCACGCTTCTTG 60.110 55.000 0.75 0.00 45.16 3.02
3288 3536 1.208614 GCTTCAGCACGCTTCTTGG 59.791 57.895 0.00 0.00 41.59 3.61
3289 3537 1.230635 GCTTCAGCACGCTTCTTGGA 61.231 55.000 0.00 0.00 41.59 3.53
3290 3538 1.229428 CTTCAGCACGCTTCTTGGAA 58.771 50.000 0.00 0.00 0.00 3.53
3291 3539 1.196354 CTTCAGCACGCTTCTTGGAAG 59.804 52.381 3.22 3.22 0.00 3.46
3292 3540 0.603707 TCAGCACGCTTCTTGGAAGG 60.604 55.000 8.98 2.90 0.00 3.46
3293 3541 1.302832 AGCACGCTTCTTGGAAGGG 60.303 57.895 18.31 18.31 36.43 3.95
3294 3542 2.335712 GCACGCTTCTTGGAAGGGG 61.336 63.158 21.95 14.47 34.89 4.79
3295 3543 1.374947 CACGCTTCTTGGAAGGGGA 59.625 57.895 21.95 0.00 34.89 4.81
3296 3544 0.035056 CACGCTTCTTGGAAGGGGAT 60.035 55.000 21.95 5.76 34.89 3.85
3297 3545 0.035056 ACGCTTCTTGGAAGGGGATG 60.035 55.000 21.95 0.00 34.89 3.51
3298 3546 1.379642 CGCTTCTTGGAAGGGGATGC 61.380 60.000 13.99 0.00 0.00 3.91
3299 3547 0.323725 GCTTCTTGGAAGGGGATGCA 60.324 55.000 8.98 0.00 32.70 3.96
3300 3548 1.892329 GCTTCTTGGAAGGGGATGCAA 60.892 52.381 8.98 0.00 32.70 4.08
3301 3549 2.528564 CTTCTTGGAAGGGGATGCAAA 58.471 47.619 0.00 0.00 29.89 3.68
3302 3550 2.220653 TCTTGGAAGGGGATGCAAAG 57.779 50.000 0.00 0.00 29.89 2.77
3303 3551 0.533951 CTTGGAAGGGGATGCAAAGC 59.466 55.000 0.00 0.00 29.89 3.51
3304 3552 0.904394 TTGGAAGGGGATGCAAAGCC 60.904 55.000 0.00 0.00 0.00 4.35
3305 3553 1.000866 GGAAGGGGATGCAAAGCCT 59.999 57.895 0.00 0.00 0.00 4.58
3306 3554 1.039785 GGAAGGGGATGCAAAGCCTC 61.040 60.000 0.00 0.00 0.00 4.70
3307 3555 1.379044 AAGGGGATGCAAAGCCTCG 60.379 57.895 0.00 0.00 0.00 4.63
3308 3556 2.044946 GGGGATGCAAAGCCTCGT 60.045 61.111 0.00 0.00 0.00 4.18
3309 3557 2.409870 GGGGATGCAAAGCCTCGTG 61.410 63.158 0.00 0.00 0.00 4.35
3310 3558 2.486966 GGATGCAAAGCCTCGTGC 59.513 61.111 0.00 0.00 41.29 5.34
3313 3561 2.568935 GATGCAAAGCCTCGTGCGTC 62.569 60.000 6.76 6.76 46.32 5.19
3320 3568 3.458579 CCTCGTGCGTCGTTCGTG 61.459 66.667 9.94 8.09 42.13 4.35
3321 3569 2.426261 CTCGTGCGTCGTTCGTGA 60.426 61.111 9.94 1.50 42.13 4.35
3322 3570 1.796355 CTCGTGCGTCGTTCGTGAT 60.796 57.895 9.94 0.00 42.13 3.06
3323 3571 1.721257 CTCGTGCGTCGTTCGTGATC 61.721 60.000 9.94 0.00 42.13 2.92
3324 3572 1.796355 CGTGCGTCGTTCGTGATCT 60.796 57.895 0.00 0.00 42.13 2.75
3325 3573 1.334992 CGTGCGTCGTTCGTGATCTT 61.335 55.000 0.00 0.00 42.13 2.40
3326 3574 0.362512 GTGCGTCGTTCGTGATCTTC 59.637 55.000 0.00 0.00 42.13 2.87
3327 3575 0.039888 TGCGTCGTTCGTGATCTTCA 60.040 50.000 0.00 0.00 42.13 3.02
3328 3576 0.635731 GCGTCGTTCGTGATCTTCAG 59.364 55.000 0.00 0.00 42.13 3.02
3329 3577 0.635731 CGTCGTTCGTGATCTTCAGC 59.364 55.000 0.00 0.00 34.52 4.26
3330 3578 1.729472 CGTCGTTCGTGATCTTCAGCT 60.729 52.381 0.00 0.00 34.52 4.24
3331 3579 2.329379 GTCGTTCGTGATCTTCAGCTT 58.671 47.619 0.00 0.00 0.00 3.74
3332 3580 2.091277 GTCGTTCGTGATCTTCAGCTTG 59.909 50.000 0.00 0.00 0.00 4.01
3333 3581 1.391485 CGTTCGTGATCTTCAGCTTGG 59.609 52.381 0.00 0.00 0.00 3.61
3334 3582 1.129437 GTTCGTGATCTTCAGCTTGGC 59.871 52.381 0.00 0.00 0.00 4.52
3335 3583 0.391661 TCGTGATCTTCAGCTTGGCC 60.392 55.000 0.00 0.00 0.00 5.36
3336 3584 0.674581 CGTGATCTTCAGCTTGGCCA 60.675 55.000 0.00 0.00 0.00 5.36
3337 3585 1.093159 GTGATCTTCAGCTTGGCCAG 58.907 55.000 5.11 1.08 0.00 4.85
3338 3586 0.034767 TGATCTTCAGCTTGGCCAGG 60.035 55.000 11.24 11.24 0.00 4.45
3339 3587 0.750911 GATCTTCAGCTTGGCCAGGG 60.751 60.000 17.71 10.14 0.00 4.45
3340 3588 1.210204 ATCTTCAGCTTGGCCAGGGA 61.210 55.000 17.71 5.07 0.00 4.20
3341 3589 1.210204 TCTTCAGCTTGGCCAGGGAT 61.210 55.000 17.71 4.77 0.00 3.85
3342 3590 0.324091 CTTCAGCTTGGCCAGGGATT 60.324 55.000 17.71 0.00 0.00 3.01
3343 3591 0.323725 TTCAGCTTGGCCAGGGATTC 60.324 55.000 17.71 0.00 0.00 2.52
3344 3592 1.000521 CAGCTTGGCCAGGGATTCA 60.001 57.895 17.71 0.00 0.00 2.57
3345 3593 1.000396 AGCTTGGCCAGGGATTCAC 60.000 57.895 17.71 0.00 0.00 3.18
3346 3594 2.054453 GCTTGGCCAGGGATTCACC 61.054 63.158 17.71 0.00 38.08 4.02
3347 3595 1.383799 CTTGGCCAGGGATTCACCA 59.616 57.895 7.05 0.00 41.20 4.17
3348 3596 0.682209 CTTGGCCAGGGATTCACCAG 60.682 60.000 7.05 0.00 41.20 4.00
3349 3597 2.440980 GGCCAGGGATTCACCAGC 60.441 66.667 0.00 0.00 41.20 4.85
3350 3598 2.825836 GCCAGGGATTCACCAGCG 60.826 66.667 0.00 0.00 41.20 5.18
3351 3599 2.124570 CCAGGGATTCACCAGCGG 60.125 66.667 0.00 0.00 41.20 5.52
3352 3600 2.124570 CAGGGATTCACCAGCGGG 60.125 66.667 0.00 0.00 41.20 6.13
3353 3601 3.411517 AGGGATTCACCAGCGGGG 61.412 66.667 8.08 1.20 44.81 5.73
3355 3603 4.115199 GGATTCACCAGCGGGGCT 62.115 66.667 8.08 0.00 42.05 5.19
3356 3604 2.044946 GATTCACCAGCGGGGCTT 60.045 61.111 8.08 0.00 42.05 4.35
3357 3605 2.044946 ATTCACCAGCGGGGCTTC 60.045 61.111 8.08 0.00 42.05 3.86
3358 3606 2.819984 GATTCACCAGCGGGGCTTCA 62.820 60.000 8.08 0.00 42.05 3.02
3359 3607 2.826777 ATTCACCAGCGGGGCTTCAG 62.827 60.000 8.08 0.00 42.05 3.02
3363 3611 4.479993 CAGCGGGGCTTCAGGGAG 62.480 72.222 0.00 0.00 36.40 4.30
3370 3618 3.081554 GCTTCAGGGAGCCTCCAA 58.918 61.111 13.90 0.00 38.64 3.53
3371 3619 1.380302 GCTTCAGGGAGCCTCCAAA 59.620 57.895 13.90 2.78 38.64 3.28
3372 3620 0.033699 GCTTCAGGGAGCCTCCAAAT 60.034 55.000 13.90 0.00 38.64 2.32
3373 3621 2.021208 GCTTCAGGGAGCCTCCAAATC 61.021 57.143 13.90 0.00 38.64 2.17
3374 3622 1.283029 CTTCAGGGAGCCTCCAAATCA 59.717 52.381 13.90 0.00 38.64 2.57
3375 3623 0.914644 TCAGGGAGCCTCCAAATCAG 59.085 55.000 13.90 0.00 38.64 2.90
3376 3624 0.750911 CAGGGAGCCTCCAAATCAGC 60.751 60.000 13.90 0.00 38.64 4.26
3377 3625 1.454663 GGGAGCCTCCAAATCAGCC 60.455 63.158 13.90 0.00 38.64 4.85
3378 3626 1.304282 GGAGCCTCCAAATCAGCCA 59.696 57.895 5.69 0.00 36.28 4.75
3379 3627 1.034292 GGAGCCTCCAAATCAGCCAC 61.034 60.000 5.69 0.00 36.28 5.01
3380 3628 0.034670 GAGCCTCCAAATCAGCCACT 60.035 55.000 0.00 0.00 0.00 4.00
3381 3629 0.323178 AGCCTCCAAATCAGCCACTG 60.323 55.000 0.00 0.00 0.00 3.66
3382 3630 0.322816 GCCTCCAAATCAGCCACTGA 60.323 55.000 0.00 0.00 44.99 3.41
3390 3638 1.747709 ATCAGCCACTGATCAACAGC 58.252 50.000 4.26 0.00 46.83 4.40
3391 3639 2.010544 ATCAGCCACTGATCAACAGCG 61.011 52.381 4.26 0.00 46.83 5.18
3396 3644 3.869272 CTGATCAACAGCGGCCGC 61.869 66.667 42.34 42.34 39.86 6.53
3416 3664 2.983229 CCTCAGGAAGGTTGTGAGATG 58.017 52.381 0.10 0.00 40.21 2.90
3417 3665 2.354259 CTCAGGAAGGTTGTGAGATGC 58.646 52.381 0.00 0.00 40.21 3.91
3418 3666 1.081892 CAGGAAGGTTGTGAGATGCG 58.918 55.000 0.00 0.00 0.00 4.73
3419 3667 0.687354 AGGAAGGTTGTGAGATGCGT 59.313 50.000 0.00 0.00 0.00 5.24
3420 3668 1.072331 AGGAAGGTTGTGAGATGCGTT 59.928 47.619 0.00 0.00 0.00 4.84
3421 3669 1.197721 GGAAGGTTGTGAGATGCGTTG 59.802 52.381 0.00 0.00 0.00 4.10
3422 3670 1.873591 GAAGGTTGTGAGATGCGTTGT 59.126 47.619 0.00 0.00 0.00 3.32
3423 3671 1.229428 AGGTTGTGAGATGCGTTGTG 58.771 50.000 0.00 0.00 0.00 3.33
3424 3672 1.202639 AGGTTGTGAGATGCGTTGTGA 60.203 47.619 0.00 0.00 0.00 3.58
3425 3673 1.601903 GGTTGTGAGATGCGTTGTGAA 59.398 47.619 0.00 0.00 0.00 3.18
3426 3674 2.349817 GGTTGTGAGATGCGTTGTGAAG 60.350 50.000 0.00 0.00 0.00 3.02
3427 3675 1.511850 TGTGAGATGCGTTGTGAAGG 58.488 50.000 0.00 0.00 0.00 3.46
3428 3676 0.166814 GTGAGATGCGTTGTGAAGGC 59.833 55.000 0.00 0.00 42.32 4.35
3429 3677 0.955428 TGAGATGCGTTGTGAAGGCC 60.955 55.000 0.00 0.00 41.35 5.19
3430 3678 0.674895 GAGATGCGTTGTGAAGGCCT 60.675 55.000 0.00 0.00 41.35 5.19
3431 3679 0.250901 AGATGCGTTGTGAAGGCCTT 60.251 50.000 20.65 20.65 41.35 4.35
3432 3680 0.169009 GATGCGTTGTGAAGGCCTTC 59.831 55.000 34.48 34.48 41.35 3.46
3433 3681 0.537143 ATGCGTTGTGAAGGCCTTCA 60.537 50.000 38.69 38.69 46.27 3.02
3442 3690 2.436417 TGAAGGCCTTCAATCTTTCCG 58.564 47.619 39.82 0.00 45.56 4.30
3443 3691 1.133216 GAAGGCCTTCAATCTTTCCGC 59.867 52.381 35.71 8.57 39.31 5.54
3444 3692 0.038166 AGGCCTTCAATCTTTCCGCA 59.962 50.000 0.00 0.00 0.00 5.69
3445 3693 0.453390 GGCCTTCAATCTTTCCGCAG 59.547 55.000 0.00 0.00 0.00 5.18
3446 3694 1.168714 GCCTTCAATCTTTCCGCAGT 58.831 50.000 0.00 0.00 0.00 4.40
3447 3695 1.131315 GCCTTCAATCTTTCCGCAGTC 59.869 52.381 0.00 0.00 0.00 3.51
3448 3696 2.704572 CCTTCAATCTTTCCGCAGTCT 58.295 47.619 0.00 0.00 0.00 3.24
3449 3697 2.675348 CCTTCAATCTTTCCGCAGTCTC 59.325 50.000 0.00 0.00 0.00 3.36
3450 3698 1.996292 TCAATCTTTCCGCAGTCTCG 58.004 50.000 0.00 0.00 0.00 4.04
3457 3705 4.180946 CCGCAGTCTCGGTCGAGG 62.181 72.222 18.57 5.79 44.18 4.63
3458 3706 3.125573 CGCAGTCTCGGTCGAGGA 61.126 66.667 18.57 4.83 42.20 3.71
3459 3707 2.486042 GCAGTCTCGGTCGAGGAC 59.514 66.667 18.57 14.75 42.20 3.85
3460 3708 2.333417 GCAGTCTCGGTCGAGGACA 61.333 63.158 18.57 0.00 42.20 4.02
3461 3709 1.797441 CAGTCTCGGTCGAGGACAG 59.203 63.158 18.57 9.66 42.20 3.51
3462 3710 0.956410 CAGTCTCGGTCGAGGACAGT 60.956 60.000 18.57 1.96 42.20 3.55
3463 3711 0.612229 AGTCTCGGTCGAGGACAGTA 59.388 55.000 18.57 0.00 42.20 2.74
3464 3712 1.209990 AGTCTCGGTCGAGGACAGTAT 59.790 52.381 18.57 0.47 42.20 2.12
3465 3713 1.598601 GTCTCGGTCGAGGACAGTATC 59.401 57.143 18.57 0.00 42.20 2.24
3466 3714 1.208776 TCTCGGTCGAGGACAGTATCA 59.791 52.381 18.57 0.00 42.20 2.15
3467 3715 1.331138 CTCGGTCGAGGACAGTATCAC 59.669 57.143 12.09 0.00 38.51 3.06
3468 3716 0.381089 CGGTCGAGGACAGTATCACC 59.619 60.000 0.00 0.00 33.68 4.02
3469 3717 0.745468 GGTCGAGGACAGTATCACCC 59.255 60.000 0.00 0.00 33.68 4.61
3470 3718 1.471119 GTCGAGGACAGTATCACCCA 58.529 55.000 0.00 0.00 32.09 4.51
3471 3719 1.405821 GTCGAGGACAGTATCACCCAG 59.594 57.143 0.00 0.00 32.09 4.45
3472 3720 1.005569 TCGAGGACAGTATCACCCAGT 59.994 52.381 0.00 0.00 0.00 4.00
3473 3721 1.825474 CGAGGACAGTATCACCCAGTT 59.175 52.381 0.00 0.00 0.00 3.16
3474 3722 2.159226 CGAGGACAGTATCACCCAGTTC 60.159 54.545 0.00 0.00 0.00 3.01
3475 3723 3.100671 GAGGACAGTATCACCCAGTTCT 58.899 50.000 0.00 0.00 0.00 3.01
3476 3724 3.515901 GAGGACAGTATCACCCAGTTCTT 59.484 47.826 0.00 0.00 0.00 2.52
3477 3725 3.261897 AGGACAGTATCACCCAGTTCTTG 59.738 47.826 0.00 0.00 0.00 3.02
3478 3726 3.260884 GGACAGTATCACCCAGTTCTTGA 59.739 47.826 0.00 0.00 0.00 3.02
3479 3727 4.246458 GACAGTATCACCCAGTTCTTGAC 58.754 47.826 0.00 0.00 0.00 3.18
3480 3728 3.646162 ACAGTATCACCCAGTTCTTGACA 59.354 43.478 0.00 0.00 0.00 3.58
3481 3729 3.997021 CAGTATCACCCAGTTCTTGACAC 59.003 47.826 0.00 0.00 0.00 3.67
3482 3730 3.904339 AGTATCACCCAGTTCTTGACACT 59.096 43.478 0.00 0.00 0.00 3.55
3483 3731 2.910688 TCACCCAGTTCTTGACACTC 57.089 50.000 0.00 0.00 0.00 3.51
3484 3732 2.398588 TCACCCAGTTCTTGACACTCT 58.601 47.619 0.00 0.00 0.00 3.24
3485 3733 2.771943 TCACCCAGTTCTTGACACTCTT 59.228 45.455 0.00 0.00 0.00 2.85
3486 3734 3.199946 TCACCCAGTTCTTGACACTCTTT 59.800 43.478 0.00 0.00 0.00 2.52
3487 3735 4.407621 TCACCCAGTTCTTGACACTCTTTA 59.592 41.667 0.00 0.00 0.00 1.85
3488 3736 5.104693 TCACCCAGTTCTTGACACTCTTTAA 60.105 40.000 0.00 0.00 0.00 1.52
3489 3737 5.237344 CACCCAGTTCTTGACACTCTTTAAG 59.763 44.000 0.00 0.00 0.00 1.85
3490 3738 5.130477 ACCCAGTTCTTGACACTCTTTAAGA 59.870 40.000 0.00 0.00 0.00 2.10
3491 3739 5.467063 CCCAGTTCTTGACACTCTTTAAGAC 59.533 44.000 0.00 0.00 0.00 3.01
3492 3740 5.467063 CCAGTTCTTGACACTCTTTAAGACC 59.533 44.000 0.00 0.00 0.00 3.85
3493 3741 6.049149 CAGTTCTTGACACTCTTTAAGACCA 58.951 40.000 0.00 0.00 0.00 4.02
3494 3742 6.201806 CAGTTCTTGACACTCTTTAAGACCAG 59.798 42.308 0.00 0.00 0.00 4.00
3495 3743 5.871396 TCTTGACACTCTTTAAGACCAGT 57.129 39.130 0.00 0.00 0.00 4.00
3496 3744 5.601662 TCTTGACACTCTTTAAGACCAGTG 58.398 41.667 10.12 10.12 0.00 3.66
3497 3745 5.128827 TCTTGACACTCTTTAAGACCAGTGT 59.871 40.000 15.25 15.25 42.25 3.55
3500 3748 5.353394 ACACTCTTTAAGACCAGTGTCAA 57.647 39.130 11.17 0.00 44.33 3.18
3501 3749 5.116882 ACACTCTTTAAGACCAGTGTCAAC 58.883 41.667 11.17 0.00 44.33 3.18
3502 3750 5.116180 CACTCTTTAAGACCAGTGTCAACA 58.884 41.667 5.12 0.00 44.33 3.33
3503 3751 5.006746 CACTCTTTAAGACCAGTGTCAACAC 59.993 44.000 5.11 5.11 44.33 3.32
3514 3762 3.455619 GTGTCAACACCTGCTTAATCG 57.544 47.619 1.72 0.00 40.85 3.34
3515 3763 3.064207 GTGTCAACACCTGCTTAATCGA 58.936 45.455 1.72 0.00 40.85 3.59
3516 3764 3.684788 GTGTCAACACCTGCTTAATCGAT 59.315 43.478 1.72 0.00 40.85 3.59
3517 3765 3.684305 TGTCAACACCTGCTTAATCGATG 59.316 43.478 0.00 0.00 0.00 3.84
3518 3766 3.684788 GTCAACACCTGCTTAATCGATGT 59.315 43.478 0.00 0.00 0.00 3.06
3519 3767 3.932710 TCAACACCTGCTTAATCGATGTC 59.067 43.478 0.00 0.00 0.00 3.06
3520 3768 2.906354 ACACCTGCTTAATCGATGTCC 58.094 47.619 0.00 0.00 0.00 4.02
3521 3769 2.236146 ACACCTGCTTAATCGATGTCCA 59.764 45.455 0.00 0.00 0.00 4.02
3522 3770 2.609459 CACCTGCTTAATCGATGTCCAC 59.391 50.000 0.00 0.00 0.00 4.02
3523 3771 2.236146 ACCTGCTTAATCGATGTCCACA 59.764 45.455 0.00 0.00 0.00 4.17
3524 3772 2.609459 CCTGCTTAATCGATGTCCACAC 59.391 50.000 0.00 0.00 0.00 3.82
3525 3773 2.267426 TGCTTAATCGATGTCCACACG 58.733 47.619 0.00 0.00 0.00 4.49
3526 3774 1.593006 GCTTAATCGATGTCCACACGG 59.407 52.381 0.00 0.00 0.00 4.94
3527 3775 1.593006 CTTAATCGATGTCCACACGGC 59.407 52.381 0.00 0.00 0.00 5.68
3528 3776 0.526739 TAATCGATGTCCACACGGCG 60.527 55.000 4.80 4.80 0.00 6.46
3529 3777 2.501223 AATCGATGTCCACACGGCGT 62.501 55.000 6.77 6.77 0.00 5.68
3530 3778 2.501223 ATCGATGTCCACACGGCGTT 62.501 55.000 11.19 0.00 0.00 4.84
3531 3779 1.444724 CGATGTCCACACGGCGTTA 60.445 57.895 11.19 0.00 0.00 3.18
3532 3780 0.804544 CGATGTCCACACGGCGTTAT 60.805 55.000 11.19 0.00 0.00 1.89
3533 3781 1.365699 GATGTCCACACGGCGTTATT 58.634 50.000 11.19 0.00 0.00 1.40
3534 3782 1.062002 GATGTCCACACGGCGTTATTG 59.938 52.381 11.19 8.02 0.00 1.90
3535 3783 0.033642 TGTCCACACGGCGTTATTGA 59.966 50.000 11.19 1.48 0.00 2.57
3536 3784 1.149987 GTCCACACGGCGTTATTGAA 58.850 50.000 11.19 0.00 0.00 2.69
3537 3785 1.532007 GTCCACACGGCGTTATTGAAA 59.468 47.619 11.19 0.00 0.00 2.69
3538 3786 2.031857 GTCCACACGGCGTTATTGAAAA 60.032 45.455 11.19 0.00 0.00 2.29
3539 3787 2.814919 TCCACACGGCGTTATTGAAAAT 59.185 40.909 11.19 0.00 0.00 1.82
3540 3788 3.253677 TCCACACGGCGTTATTGAAAATT 59.746 39.130 11.19 0.00 0.00 1.82
3541 3789 4.454847 TCCACACGGCGTTATTGAAAATTA 59.545 37.500 11.19 0.00 0.00 1.40
3542 3790 5.124138 TCCACACGGCGTTATTGAAAATTAT 59.876 36.000 11.19 0.00 0.00 1.28
3543 3791 6.315642 TCCACACGGCGTTATTGAAAATTATA 59.684 34.615 11.19 0.00 0.00 0.98
3544 3792 6.631238 CCACACGGCGTTATTGAAAATTATAG 59.369 38.462 11.19 0.00 0.00 1.31
3545 3793 7.403421 CACACGGCGTTATTGAAAATTATAGA 58.597 34.615 11.19 0.00 0.00 1.98
3546 3794 7.582679 CACACGGCGTTATTGAAAATTATAGAG 59.417 37.037 11.19 0.00 0.00 2.43
3547 3795 7.279313 ACACGGCGTTATTGAAAATTATAGAGT 59.721 33.333 11.19 0.00 0.00 3.24
3548 3796 8.120465 CACGGCGTTATTGAAAATTATAGAGTT 58.880 33.333 11.19 0.00 0.00 3.01
3549 3797 8.333186 ACGGCGTTATTGAAAATTATAGAGTTC 58.667 33.333 6.77 0.00 0.00 3.01
3550 3798 7.797123 CGGCGTTATTGAAAATTATAGAGTTCC 59.203 37.037 0.00 0.00 0.00 3.62
3551 3799 8.837389 GGCGTTATTGAAAATTATAGAGTTCCT 58.163 33.333 0.00 0.00 0.00 3.36
3568 3816 8.196378 AGAGTTCCTATATTTCCAGATACACC 57.804 38.462 0.00 0.00 0.00 4.16
3569 3817 7.789831 AGAGTTCCTATATTTCCAGATACACCA 59.210 37.037 0.00 0.00 0.00 4.17
3570 3818 8.511748 AGTTCCTATATTTCCAGATACACCAT 57.488 34.615 0.00 0.00 0.00 3.55
3571 3819 9.615660 AGTTCCTATATTTCCAGATACACCATA 57.384 33.333 0.00 0.00 0.00 2.74
3572 3820 9.877178 GTTCCTATATTTCCAGATACACCATAG 57.123 37.037 0.00 0.00 0.00 2.23
3573 3821 9.837681 TTCCTATATTTCCAGATACACCATAGA 57.162 33.333 0.00 0.00 0.00 1.98
3574 3822 9.837681 TCCTATATTTCCAGATACACCATAGAA 57.162 33.333 0.00 0.00 0.00 2.10
3575 3823 9.877178 CCTATATTTCCAGATACACCATAGAAC 57.123 37.037 0.00 0.00 0.00 3.01
3578 3826 7.865706 ATTTCCAGATACACCATAGAACAAC 57.134 36.000 0.00 0.00 0.00 3.32
3579 3827 6.367374 TTCCAGATACACCATAGAACAACA 57.633 37.500 0.00 0.00 0.00 3.33
3580 3828 5.977635 TCCAGATACACCATAGAACAACAG 58.022 41.667 0.00 0.00 0.00 3.16
3581 3829 4.572389 CCAGATACACCATAGAACAACAGC 59.428 45.833 0.00 0.00 0.00 4.40
3582 3830 5.178061 CAGATACACCATAGAACAACAGCA 58.822 41.667 0.00 0.00 0.00 4.41
3583 3831 5.819379 CAGATACACCATAGAACAACAGCAT 59.181 40.000 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.209315 CCCAGGGTTTGCCACAAGG 61.209 63.158 0.00 0.00 36.17 3.61
106 111 6.433766 CAAAGAAAAGAAACTAGGCTGACTG 58.566 40.000 0.00 0.00 0.00 3.51
521 526 8.147704 TGATATGGACAGCGTTTGATATTAGAA 58.852 33.333 0.00 0.00 0.00 2.10
538 543 8.378565 TCTCTCCAGGATATTTTTGATATGGAC 58.621 37.037 0.00 0.00 32.40 4.02
592 597 4.742167 CAGATATCTTGTAGACCGTGCTTG 59.258 45.833 1.33 0.00 0.00 4.01
614 619 7.674348 TCCTACTGTAAAAAGAGAGGAGAATCA 59.326 37.037 0.00 0.00 36.25 2.57
645 650 3.562141 CCGGCACCAAACGAATTATCATA 59.438 43.478 0.00 0.00 0.00 2.15
687 693 1.272985 ACTTCTCCCCCTCTCACTCTG 60.273 57.143 0.00 0.00 0.00 3.35
692 698 1.984570 CGCACTTCTCCCCCTCTCA 60.985 63.158 0.00 0.00 0.00 3.27
694 700 3.394836 GCGCACTTCTCCCCCTCT 61.395 66.667 0.30 0.00 0.00 3.69
711 719 0.179468 TCCTCCCGAAAATAAGGCCG 59.821 55.000 0.00 0.00 0.00 6.13
769 838 2.023741 GATCGGCTGCGCACAATG 59.976 61.111 5.66 0.00 0.00 2.82
782 851 1.375396 TGGACCAAACAGCCGATCG 60.375 57.895 8.51 8.51 0.00 3.69
833 902 4.152402 CGCACACAAATAGTAGAGCACTTT 59.848 41.667 0.00 0.00 38.80 2.66
834 903 3.679980 CGCACACAAATAGTAGAGCACTT 59.320 43.478 0.00 0.00 38.80 3.16
836 905 3.250744 TCGCACACAAATAGTAGAGCAC 58.749 45.455 0.00 0.00 0.00 4.40
839 908 2.860735 GGCTCGCACACAAATAGTAGAG 59.139 50.000 0.00 0.00 0.00 2.43
840 909 2.232696 TGGCTCGCACACAAATAGTAGA 59.767 45.455 0.00 0.00 0.00 2.59
841 910 2.616960 TGGCTCGCACACAAATAGTAG 58.383 47.619 0.00 0.00 0.00 2.57
843 912 1.890876 TTGGCTCGCACACAAATAGT 58.109 45.000 0.00 0.00 0.00 2.12
846 915 1.246649 TGATTGGCTCGCACACAAAT 58.753 45.000 0.00 0.00 0.00 2.32
870 941 1.657487 CCTAGGTGACATACGCGCG 60.657 63.158 30.96 30.96 0.00 6.86
872 943 0.030369 GACCCTAGGTGACATACGCG 59.970 60.000 3.53 3.53 35.25 6.01
906 977 7.772332 AATAACGGATTAGTCAGTTGATCAC 57.228 36.000 12.78 0.00 41.75 3.06
1086 1157 2.123251 AGATGGCGGACCCGAGAT 60.123 61.111 13.24 2.53 42.83 2.75
1228 1299 1.347320 GAGTTTCGGTCGATGGTGAC 58.653 55.000 0.00 0.00 38.17 3.67
1241 1312 2.434359 CAGCCCGTCCGGAGTTTC 60.434 66.667 3.06 0.00 37.50 2.78
1257 1328 3.709633 AGCATCACCGGCTGCTCA 61.710 61.111 18.18 0.00 45.30 4.26
1276 1347 3.499737 CGGTGCATGTTCCTCGGC 61.500 66.667 0.00 0.00 0.00 5.54
1277 1348 3.499737 GCGGTGCATGTTCCTCGG 61.500 66.667 0.00 0.00 0.00 4.63
1278 1349 2.434884 AGCGGTGCATGTTCCTCG 60.435 61.111 0.00 0.00 0.00 4.63
1283 1354 1.672356 GGAGTGAGCGGTGCATGTT 60.672 57.895 0.00 0.00 0.00 2.71
1317 1388 2.514824 GTGCTCCGATTGGCCTCC 60.515 66.667 3.32 0.00 34.14 4.30
1455 1534 1.678635 CGGGCACATGTCCAACCAT 60.679 57.895 13.95 0.00 40.62 3.55
2445 2544 3.147595 CTCGGGATGAGCCGGACA 61.148 66.667 5.05 4.62 40.69 4.02
2758 3000 3.561725 CCGATCATTTCCCTAGCAGTTTC 59.438 47.826 0.00 0.00 0.00 2.78
2762 3004 1.517242 GCCGATCATTTCCCTAGCAG 58.483 55.000 0.00 0.00 0.00 4.24
2889 3136 8.733857 AAGCGAAATCTATTTCAAAAGAACAG 57.266 30.769 14.12 0.00 44.83 3.16
2948 3196 5.815222 TCTCACCACATATATTGTTCGGTTG 59.185 40.000 0.00 0.00 33.49 3.77
2949 3197 5.984725 TCTCACCACATATATTGTTCGGTT 58.015 37.500 0.00 0.00 33.49 4.44
2950 3198 5.607939 TCTCACCACATATATTGTTCGGT 57.392 39.130 0.00 0.00 35.54 4.69
2951 3199 6.511767 GCTTTCTCACCACATATATTGTTCGG 60.512 42.308 0.00 0.00 36.00 4.30
2952 3200 6.422223 GCTTTCTCACCACATATATTGTTCG 58.578 40.000 0.00 0.00 36.00 3.95
2953 3201 6.543831 AGGCTTTCTCACCACATATATTGTTC 59.456 38.462 0.00 0.00 36.00 3.18
2954 3202 6.426587 AGGCTTTCTCACCACATATATTGTT 58.573 36.000 0.00 0.00 36.00 2.83
2955 3203 6.006275 AGGCTTTCTCACCACATATATTGT 57.994 37.500 0.00 0.00 39.91 2.71
2956 3204 6.057533 TGAGGCTTTCTCACCACATATATTG 58.942 40.000 0.00 0.00 46.71 1.90
2957 3205 6.252599 TGAGGCTTTCTCACCACATATATT 57.747 37.500 0.00 0.00 46.71 1.28
2958 3206 5.894298 TGAGGCTTTCTCACCACATATAT 57.106 39.130 0.00 0.00 46.71 0.86
2969 3217 3.551659 CCTGCTTTGTTTGAGGCTTTCTC 60.552 47.826 0.00 0.00 42.74 2.87
2970 3218 2.363359 CCTGCTTTGTTTGAGGCTTTCT 59.637 45.455 0.00 0.00 0.00 2.52
2971 3219 2.546584 CCCTGCTTTGTTTGAGGCTTTC 60.547 50.000 0.00 0.00 0.00 2.62
2972 3220 1.413812 CCCTGCTTTGTTTGAGGCTTT 59.586 47.619 0.00 0.00 0.00 3.51
2973 3221 1.043022 CCCTGCTTTGTTTGAGGCTT 58.957 50.000 0.00 0.00 0.00 4.35
2974 3222 1.466851 GCCCTGCTTTGTTTGAGGCT 61.467 55.000 0.00 0.00 36.00 4.58
2975 3223 1.005748 GCCCTGCTTTGTTTGAGGC 60.006 57.895 0.00 0.00 0.00 4.70
2976 3224 0.600057 GAGCCCTGCTTTGTTTGAGG 59.400 55.000 0.00 0.00 39.88 3.86
2977 3225 0.600057 GGAGCCCTGCTTTGTTTGAG 59.400 55.000 0.00 0.00 39.88 3.02
2978 3226 0.106268 TGGAGCCCTGCTTTGTTTGA 60.106 50.000 0.00 0.00 39.88 2.69
2979 3227 0.752054 TTGGAGCCCTGCTTTGTTTG 59.248 50.000 0.00 0.00 39.88 2.93
2980 3228 1.043022 CTTGGAGCCCTGCTTTGTTT 58.957 50.000 0.00 0.00 39.88 2.83
2981 3229 0.185901 TCTTGGAGCCCTGCTTTGTT 59.814 50.000 0.00 0.00 39.88 2.83
2982 3230 0.185901 TTCTTGGAGCCCTGCTTTGT 59.814 50.000 0.00 0.00 39.88 2.83
2983 3231 1.331214 TTTCTTGGAGCCCTGCTTTG 58.669 50.000 0.00 0.00 39.88 2.77
2984 3232 2.086610 TTTTCTTGGAGCCCTGCTTT 57.913 45.000 0.00 0.00 39.88 3.51
2985 3233 1.897802 CATTTTCTTGGAGCCCTGCTT 59.102 47.619 0.00 0.00 39.88 3.91
2986 3234 1.553706 CATTTTCTTGGAGCCCTGCT 58.446 50.000 0.00 0.00 43.88 4.24
2987 3235 0.533951 CCATTTTCTTGGAGCCCTGC 59.466 55.000 0.00 0.00 39.25 4.85
2988 3236 1.821136 GTCCATTTTCTTGGAGCCCTG 59.179 52.381 0.00 0.00 46.31 4.45
2989 3237 1.428912 TGTCCATTTTCTTGGAGCCCT 59.571 47.619 0.00 0.00 46.31 5.19
2990 3238 1.923356 TGTCCATTTTCTTGGAGCCC 58.077 50.000 0.00 0.00 46.31 5.19
2991 3239 4.098501 CCTATTGTCCATTTTCTTGGAGCC 59.901 45.833 0.00 0.00 46.31 4.70
2992 3240 4.949856 TCCTATTGTCCATTTTCTTGGAGC 59.050 41.667 0.00 0.00 46.31 4.70
2993 3241 6.886459 TCTTCCTATTGTCCATTTTCTTGGAG 59.114 38.462 0.00 0.00 46.31 3.86
2994 3242 6.659242 GTCTTCCTATTGTCCATTTTCTTGGA 59.341 38.462 0.00 0.00 43.56 3.53
2995 3243 6.127619 GGTCTTCCTATTGTCCATTTTCTTGG 60.128 42.308 0.00 0.00 38.18 3.61
2996 3244 6.660949 AGGTCTTCCTATTGTCCATTTTCTTG 59.339 38.462 0.00 0.00 43.12 3.02
2997 3245 6.794534 AGGTCTTCCTATTGTCCATTTTCTT 58.205 36.000 0.00 0.00 43.12 2.52
2998 3246 6.394345 AGGTCTTCCTATTGTCCATTTTCT 57.606 37.500 0.00 0.00 43.12 2.52
2999 3247 8.575649 TTTAGGTCTTCCTATTGTCCATTTTC 57.424 34.615 0.00 0.00 44.68 2.29
3000 3248 8.950007 TTTTAGGTCTTCCTATTGTCCATTTT 57.050 30.769 0.00 0.00 44.68 1.82
3001 3249 7.122799 GCTTTTAGGTCTTCCTATTGTCCATTT 59.877 37.037 0.00 0.00 44.68 2.32
3002 3250 6.603599 GCTTTTAGGTCTTCCTATTGTCCATT 59.396 38.462 0.00 0.00 44.68 3.16
3003 3251 6.122964 GCTTTTAGGTCTTCCTATTGTCCAT 58.877 40.000 0.00 0.00 44.68 3.41
3004 3252 5.013704 TGCTTTTAGGTCTTCCTATTGTCCA 59.986 40.000 0.00 0.00 44.68 4.02
3005 3253 5.497474 TGCTTTTAGGTCTTCCTATTGTCC 58.503 41.667 0.00 0.00 44.68 4.02
3006 3254 7.631717 AATGCTTTTAGGTCTTCCTATTGTC 57.368 36.000 0.00 0.00 44.68 3.18
3007 3255 7.122799 GGAAATGCTTTTAGGTCTTCCTATTGT 59.877 37.037 0.00 0.00 44.68 2.71
3008 3256 7.122650 TGGAAATGCTTTTAGGTCTTCCTATTG 59.877 37.037 0.00 0.00 44.68 1.90
3009 3257 7.182060 TGGAAATGCTTTTAGGTCTTCCTATT 58.818 34.615 0.00 0.00 44.68 1.73
3010 3258 6.731467 TGGAAATGCTTTTAGGTCTTCCTAT 58.269 36.000 0.00 0.00 44.68 2.57
3011 3259 6.134535 TGGAAATGCTTTTAGGTCTTCCTA 57.865 37.500 0.00 0.00 44.58 2.94
3013 3261 5.010617 TGTTGGAAATGCTTTTAGGTCTTCC 59.989 40.000 0.00 0.00 33.06 3.46
3014 3262 6.084326 TGTTGGAAATGCTTTTAGGTCTTC 57.916 37.500 0.00 0.00 0.00 2.87
3015 3263 6.670695 ATGTTGGAAATGCTTTTAGGTCTT 57.329 33.333 0.00 0.00 0.00 3.01
3016 3264 6.378280 CCTATGTTGGAAATGCTTTTAGGTCT 59.622 38.462 0.00 0.00 0.00 3.85
3017 3265 6.564328 CCTATGTTGGAAATGCTTTTAGGTC 58.436 40.000 0.00 0.00 0.00 3.85
3018 3266 5.105351 GCCTATGTTGGAAATGCTTTTAGGT 60.105 40.000 0.00 0.00 0.00 3.08
3019 3267 5.351458 GCCTATGTTGGAAATGCTTTTAGG 58.649 41.667 0.00 1.18 0.00 2.69
3020 3268 5.036737 CGCCTATGTTGGAAATGCTTTTAG 58.963 41.667 0.00 0.00 0.00 1.85
3021 3269 4.676723 GCGCCTATGTTGGAAATGCTTTTA 60.677 41.667 0.00 0.00 0.00 1.52
3022 3270 3.848726 CGCCTATGTTGGAAATGCTTTT 58.151 40.909 0.00 0.00 0.00 2.27
3023 3271 2.417243 GCGCCTATGTTGGAAATGCTTT 60.417 45.455 0.00 0.00 0.00 3.51
3024 3272 1.134946 GCGCCTATGTTGGAAATGCTT 59.865 47.619 0.00 0.00 0.00 3.91
3025 3273 0.740737 GCGCCTATGTTGGAAATGCT 59.259 50.000 0.00 0.00 0.00 3.79
3026 3274 0.740737 AGCGCCTATGTTGGAAATGC 59.259 50.000 2.29 0.00 0.00 3.56
3027 3275 4.630894 TTTAGCGCCTATGTTGGAAATG 57.369 40.909 2.29 0.00 0.00 2.32
3028 3276 6.515035 GCTTATTTAGCGCCTATGTTGGAAAT 60.515 38.462 2.29 0.00 40.71 2.17
3029 3277 5.220970 GCTTATTTAGCGCCTATGTTGGAAA 60.221 40.000 2.29 0.00 40.71 3.13
3030 3278 4.274950 GCTTATTTAGCGCCTATGTTGGAA 59.725 41.667 2.29 0.00 40.71 3.53
3031 3279 3.813166 GCTTATTTAGCGCCTATGTTGGA 59.187 43.478 2.29 0.00 40.71 3.53
3032 3280 4.147219 GCTTATTTAGCGCCTATGTTGG 57.853 45.455 2.29 0.00 40.71 3.77
3044 3292 0.229753 CAGACGCGCGGCTTATTTAG 59.770 55.000 39.88 21.00 0.00 1.85
3045 3293 0.179132 TCAGACGCGCGGCTTATTTA 60.179 50.000 39.88 16.65 0.00 1.40
3046 3294 1.017177 TTCAGACGCGCGGCTTATTT 61.017 50.000 39.88 13.42 0.00 1.40
3047 3295 1.017177 TTTCAGACGCGCGGCTTATT 61.017 50.000 39.88 13.93 0.00 1.40
3048 3296 1.017177 TTTTCAGACGCGCGGCTTAT 61.017 50.000 39.88 14.42 0.00 1.73
3049 3297 1.222766 TTTTTCAGACGCGCGGCTTA 61.223 50.000 39.88 28.55 0.00 3.09
3050 3298 2.539338 TTTTTCAGACGCGCGGCTT 61.539 52.632 39.88 19.71 0.00 4.35
3051 3299 2.970324 TTTTTCAGACGCGCGGCT 60.970 55.556 36.67 36.67 0.00 5.52
3066 3314 1.971792 CGCGCTAAAAATCCGGTTTT 58.028 45.000 5.56 2.22 41.69 2.43
3067 3315 0.455464 GCGCGCTAAAAATCCGGTTT 60.455 50.000 26.67 0.00 0.00 3.27
3068 3316 1.135939 GCGCGCTAAAAATCCGGTT 59.864 52.632 26.67 0.00 0.00 4.44
3069 3317 2.789249 GCGCGCTAAAAATCCGGT 59.211 55.556 26.67 0.00 0.00 5.28
3070 3318 2.350760 CGCGCGCTAAAAATCCGG 60.351 61.111 30.48 5.07 0.00 5.14
3071 3319 3.011240 GCGCGCGCTAAAAATCCG 61.011 61.111 44.38 11.16 38.26 4.18
3072 3320 3.011240 CGCGCGCGCTAAAAATCC 61.011 61.111 45.97 19.75 39.32 3.01
3073 3321 2.020832 TCGCGCGCGCTAAAAATC 59.979 55.556 45.97 20.49 39.59 2.17
3074 3322 2.276430 GTCGCGCGCGCTAAAAAT 60.276 55.556 45.97 0.00 39.59 1.82
3075 3323 4.433431 GGTCGCGCGCGCTAAAAA 62.433 61.111 45.97 27.06 39.59 1.94
3089 3337 1.272781 CTGAAGCTGTCGATTCGGTC 58.727 55.000 6.18 1.06 38.35 4.79
3090 3338 0.737715 GCTGAAGCTGTCGATTCGGT 60.738 55.000 6.18 0.00 42.47 4.69
3091 3339 0.737367 TGCTGAAGCTGTCGATTCGG 60.737 55.000 6.18 1.66 43.16 4.30
3092 3340 0.644331 CTGCTGAAGCTGTCGATTCG 59.356 55.000 3.61 0.00 38.35 3.34
3093 3341 1.658095 GTCTGCTGAAGCTGTCGATTC 59.342 52.381 3.61 0.00 42.66 2.52
3094 3342 1.001293 TGTCTGCTGAAGCTGTCGATT 59.999 47.619 3.61 0.00 42.66 3.34
3095 3343 0.605083 TGTCTGCTGAAGCTGTCGAT 59.395 50.000 3.61 0.00 42.66 3.59
3096 3344 0.605083 ATGTCTGCTGAAGCTGTCGA 59.395 50.000 3.61 0.00 42.66 4.20
3097 3345 0.720027 CATGTCTGCTGAAGCTGTCG 59.280 55.000 3.61 0.00 42.66 4.35
3098 3346 0.447011 GCATGTCTGCTGAAGCTGTC 59.553 55.000 3.61 1.98 45.32 3.51
3099 3347 2.552802 GCATGTCTGCTGAAGCTGT 58.447 52.632 3.61 0.00 45.32 4.40
3109 3357 0.636733 GCGCGATTTTTGCATGTCTG 59.363 50.000 12.10 0.00 0.00 3.51
3110 3358 0.794229 CGCGCGATTTTTGCATGTCT 60.794 50.000 28.94 0.00 0.00 3.41
3111 3359 1.620225 CGCGCGATTTTTGCATGTC 59.380 52.632 28.94 0.00 0.00 3.06
3112 3360 2.435737 GCGCGCGATTTTTGCATGT 61.436 52.632 37.18 0.00 0.00 3.21
3113 3361 2.314033 GCGCGCGATTTTTGCATG 59.686 55.556 37.18 0.00 0.00 4.06
3134 3382 0.096976 CCGTTATGTTTGGCGAGCAG 59.903 55.000 0.00 0.00 0.00 4.24
3135 3383 1.917782 GCCGTTATGTTTGGCGAGCA 61.918 55.000 0.00 0.00 39.30 4.26
3136 3384 1.226295 GCCGTTATGTTTGGCGAGC 60.226 57.895 0.00 0.00 39.30 5.03
3141 3389 2.094803 TCTGCAATGCCGTTATGTTTGG 60.095 45.455 1.53 0.00 0.00 3.28
3142 3390 2.916716 GTCTGCAATGCCGTTATGTTTG 59.083 45.455 1.53 0.00 0.00 2.93
3143 3391 2.414029 CGTCTGCAATGCCGTTATGTTT 60.414 45.455 1.53 0.00 0.00 2.83
3144 3392 1.130373 CGTCTGCAATGCCGTTATGTT 59.870 47.619 1.53 0.00 0.00 2.71
3145 3393 0.726827 CGTCTGCAATGCCGTTATGT 59.273 50.000 1.53 0.00 0.00 2.29
3146 3394 0.589729 GCGTCTGCAATGCCGTTATG 60.590 55.000 1.53 0.00 42.15 1.90
3147 3395 1.721487 GCGTCTGCAATGCCGTTAT 59.279 52.632 1.53 0.00 42.15 1.89
3148 3396 3.173853 GCGTCTGCAATGCCGTTA 58.826 55.556 1.53 0.00 42.15 3.18
3165 3413 3.847602 CTCTCAGGGGGCGCTCTG 61.848 72.222 24.10 24.10 0.00 3.35
3172 3420 2.612115 ACAAGGCCTCTCAGGGGG 60.612 66.667 5.23 0.00 35.37 5.40
3173 3421 2.673523 CACAAGGCCTCTCAGGGG 59.326 66.667 5.23 0.00 35.37 4.79
3174 3422 2.045536 GCACAAGGCCTCTCAGGG 60.046 66.667 5.23 0.00 35.37 4.45
3175 3423 2.435586 CGCACAAGGCCTCTCAGG 60.436 66.667 5.23 0.00 40.31 3.86
3176 3424 1.739562 GTCGCACAAGGCCTCTCAG 60.740 63.158 5.23 0.00 40.31 3.35
3177 3425 1.758440 AAGTCGCACAAGGCCTCTCA 61.758 55.000 5.23 0.00 40.31 3.27
3178 3426 1.004440 AAGTCGCACAAGGCCTCTC 60.004 57.895 5.23 0.00 40.31 3.20
3179 3427 1.004440 GAAGTCGCACAAGGCCTCT 60.004 57.895 5.23 0.00 40.31 3.69
3180 3428 1.294659 CTGAAGTCGCACAAGGCCTC 61.295 60.000 5.23 0.00 40.31 4.70
3181 3429 1.302033 CTGAAGTCGCACAAGGCCT 60.302 57.895 0.00 0.00 40.31 5.19
3182 3430 1.598130 ACTGAAGTCGCACAAGGCC 60.598 57.895 0.00 0.00 40.31 5.19
3183 3431 1.571460 CACTGAAGTCGCACAAGGC 59.429 57.895 0.00 0.00 39.90 4.35
3184 3432 0.532862 ACCACTGAAGTCGCACAAGG 60.533 55.000 0.00 0.00 0.00 3.61
3185 3433 0.583438 CACCACTGAAGTCGCACAAG 59.417 55.000 0.00 0.00 0.00 3.16
3186 3434 0.813610 CCACCACTGAAGTCGCACAA 60.814 55.000 0.00 0.00 0.00 3.33
3187 3435 1.227527 CCACCACTGAAGTCGCACA 60.228 57.895 0.00 0.00 0.00 4.57
3188 3436 1.227556 ACCACCACTGAAGTCGCAC 60.228 57.895 0.00 0.00 0.00 5.34
3189 3437 1.227527 CACCACCACTGAAGTCGCA 60.228 57.895 0.00 0.00 0.00 5.10
3190 3438 2.607892 GCACCACCACTGAAGTCGC 61.608 63.158 0.00 0.00 0.00 5.19
3191 3439 1.224069 CTGCACCACCACTGAAGTCG 61.224 60.000 0.00 0.00 0.00 4.18
3192 3440 1.510480 GCTGCACCACCACTGAAGTC 61.510 60.000 0.00 0.00 0.00 3.01
3193 3441 1.526917 GCTGCACCACCACTGAAGT 60.527 57.895 0.00 0.00 0.00 3.01
3194 3442 2.263741 GGCTGCACCACCACTGAAG 61.264 63.158 0.50 0.00 38.86 3.02
3195 3443 2.203337 GGCTGCACCACCACTGAA 60.203 61.111 0.50 0.00 38.86 3.02
3196 3444 3.480679 CTGGCTGCACCACCACTGA 62.481 63.158 0.50 0.00 46.36 3.41
3197 3445 2.981909 CTGGCTGCACCACCACTG 60.982 66.667 0.50 0.00 46.36 3.66
3198 3446 4.275508 CCTGGCTGCACCACCACT 62.276 66.667 0.50 0.00 46.36 4.00
3211 3459 4.785453 GGTCTCCGCAAGCCCTGG 62.785 72.222 0.00 0.00 0.00 4.45
3212 3460 3.965539 CTGGTCTCCGCAAGCCCTG 62.966 68.421 0.00 0.00 0.00 4.45
3213 3461 3.710722 CTGGTCTCCGCAAGCCCT 61.711 66.667 0.00 0.00 0.00 5.19
3214 3462 4.785453 CCTGGTCTCCGCAAGCCC 62.785 72.222 0.00 0.00 0.00 5.19
3232 3480 4.760047 CCTCAACCCTGACGGCCG 62.760 72.222 26.86 26.86 33.26 6.13
3233 3481 3.192103 AACCTCAACCCTGACGGCC 62.192 63.158 0.00 0.00 33.26 6.13
3234 3482 1.966451 CAACCTCAACCCTGACGGC 60.966 63.158 0.00 0.00 33.26 5.68
3235 3483 1.302511 CCAACCTCAACCCTGACGG 60.303 63.158 0.00 0.00 37.81 4.79
3236 3484 0.602905 GTCCAACCTCAACCCTGACG 60.603 60.000 0.00 0.00 0.00 4.35
3237 3485 0.765510 AGTCCAACCTCAACCCTGAC 59.234 55.000 0.00 0.00 0.00 3.51
3238 3486 1.142870 CAAGTCCAACCTCAACCCTGA 59.857 52.381 0.00 0.00 0.00 3.86
3239 3487 1.142870 TCAAGTCCAACCTCAACCCTG 59.857 52.381 0.00 0.00 0.00 4.45
3240 3488 1.143073 GTCAAGTCCAACCTCAACCCT 59.857 52.381 0.00 0.00 0.00 4.34
3241 3489 1.133915 TGTCAAGTCCAACCTCAACCC 60.134 52.381 0.00 0.00 0.00 4.11
3242 3490 2.341846 TGTCAAGTCCAACCTCAACC 57.658 50.000 0.00 0.00 0.00 3.77
3243 3491 2.480419 CGATGTCAAGTCCAACCTCAAC 59.520 50.000 0.00 0.00 0.00 3.18
3244 3492 2.104111 ACGATGTCAAGTCCAACCTCAA 59.896 45.455 0.00 0.00 0.00 3.02
3245 3493 1.691976 ACGATGTCAAGTCCAACCTCA 59.308 47.619 0.00 0.00 0.00 3.86
3246 3494 2.457366 ACGATGTCAAGTCCAACCTC 57.543 50.000 0.00 0.00 0.00 3.85
3247 3495 2.494059 CAACGATGTCAAGTCCAACCT 58.506 47.619 0.00 0.00 0.00 3.50
3248 3496 1.069227 GCAACGATGTCAAGTCCAACC 60.069 52.381 0.00 0.00 0.00 3.77
3249 3497 1.601903 TGCAACGATGTCAAGTCCAAC 59.398 47.619 0.00 0.00 0.00 3.77
3250 3498 1.872952 CTGCAACGATGTCAAGTCCAA 59.127 47.619 0.00 0.00 0.00 3.53
3251 3499 1.511850 CTGCAACGATGTCAAGTCCA 58.488 50.000 0.00 0.00 0.00 4.02
3252 3500 0.166814 GCTGCAACGATGTCAAGTCC 59.833 55.000 0.00 0.00 0.00 3.85
3253 3501 1.151668 AGCTGCAACGATGTCAAGTC 58.848 50.000 1.02 0.00 0.00 3.01
3254 3502 1.532868 GAAGCTGCAACGATGTCAAGT 59.467 47.619 1.02 0.00 0.00 3.16
3255 3503 1.532437 TGAAGCTGCAACGATGTCAAG 59.468 47.619 1.02 0.00 0.00 3.02
3256 3504 1.532437 CTGAAGCTGCAACGATGTCAA 59.468 47.619 1.02 0.00 0.00 3.18
3257 3505 1.150827 CTGAAGCTGCAACGATGTCA 58.849 50.000 1.02 0.00 0.00 3.58
3258 3506 0.179205 GCTGAAGCTGCAACGATGTC 60.179 55.000 1.02 0.00 38.21 3.06
3259 3507 0.886043 TGCTGAAGCTGCAACGATGT 60.886 50.000 1.02 0.00 42.66 3.06
3260 3508 0.453950 GTGCTGAAGCTGCAACGATG 60.454 55.000 1.02 0.00 39.78 3.84
3261 3509 1.871772 GTGCTGAAGCTGCAACGAT 59.128 52.632 1.02 0.00 39.78 3.73
3262 3510 2.597713 CGTGCTGAAGCTGCAACGA 61.598 57.895 12.78 0.00 39.78 3.85
3263 3511 2.127496 CGTGCTGAAGCTGCAACG 60.127 61.111 4.56 4.56 39.78 4.10
3264 3512 2.398128 AAGCGTGCTGAAGCTGCAAC 62.398 55.000 17.97 0.00 43.78 4.17
3265 3513 2.121564 GAAGCGTGCTGAAGCTGCAA 62.122 55.000 17.97 0.00 43.78 4.08
3266 3514 2.592574 AAGCGTGCTGAAGCTGCA 60.593 55.556 17.97 0.00 43.78 4.41
3267 3515 1.849976 AAGAAGCGTGCTGAAGCTGC 61.850 55.000 10.78 10.78 43.78 5.25
3268 3516 0.110328 CAAGAAGCGTGCTGAAGCTG 60.110 55.000 3.61 0.00 43.78 4.24
3269 3517 1.233285 CCAAGAAGCGTGCTGAAGCT 61.233 55.000 3.61 0.00 46.97 3.74
3270 3518 1.208614 CCAAGAAGCGTGCTGAAGC 59.791 57.895 0.00 0.00 42.50 3.86
3271 3519 1.196354 CTTCCAAGAAGCGTGCTGAAG 59.804 52.381 0.00 0.00 0.00 3.02
3272 3520 1.229428 CTTCCAAGAAGCGTGCTGAA 58.771 50.000 0.00 0.00 0.00 3.02
3273 3521 0.603707 CCTTCCAAGAAGCGTGCTGA 60.604 55.000 0.00 0.00 0.00 4.26
3274 3522 1.580845 CCCTTCCAAGAAGCGTGCTG 61.581 60.000 0.00 0.00 0.00 4.41
3275 3523 1.302832 CCCTTCCAAGAAGCGTGCT 60.303 57.895 0.00 0.00 0.00 4.40
3276 3524 2.335712 CCCCTTCCAAGAAGCGTGC 61.336 63.158 0.00 0.00 0.00 5.34
3277 3525 0.035056 ATCCCCTTCCAAGAAGCGTG 60.035 55.000 0.00 0.00 0.00 5.34
3278 3526 0.035056 CATCCCCTTCCAAGAAGCGT 60.035 55.000 0.00 0.00 0.00 5.07
3279 3527 1.379642 GCATCCCCTTCCAAGAAGCG 61.380 60.000 0.00 0.00 0.00 4.68
3280 3528 0.323725 TGCATCCCCTTCCAAGAAGC 60.324 55.000 0.00 0.00 0.00 3.86
3281 3529 2.220653 TTGCATCCCCTTCCAAGAAG 57.779 50.000 0.00 0.00 0.00 2.85
3282 3530 2.528564 CTTTGCATCCCCTTCCAAGAA 58.471 47.619 0.00 0.00 0.00 2.52
3283 3531 1.892329 GCTTTGCATCCCCTTCCAAGA 60.892 52.381 0.00 0.00 0.00 3.02
3284 3532 0.533951 GCTTTGCATCCCCTTCCAAG 59.466 55.000 0.00 0.00 0.00 3.61
3285 3533 0.904394 GGCTTTGCATCCCCTTCCAA 60.904 55.000 0.00 0.00 0.00 3.53
3286 3534 1.305213 GGCTTTGCATCCCCTTCCA 60.305 57.895 0.00 0.00 0.00 3.53
3287 3535 1.000866 AGGCTTTGCATCCCCTTCC 59.999 57.895 0.00 0.00 0.00 3.46
3288 3536 1.379642 CGAGGCTTTGCATCCCCTTC 61.380 60.000 0.00 0.00 35.86 3.46
3289 3537 1.379044 CGAGGCTTTGCATCCCCTT 60.379 57.895 0.00 0.00 35.86 3.95
3290 3538 2.273449 CGAGGCTTTGCATCCCCT 59.727 61.111 0.00 0.00 35.86 4.79
3291 3539 2.044946 ACGAGGCTTTGCATCCCC 60.045 61.111 0.00 0.00 35.86 4.81
3292 3540 3.056313 GCACGAGGCTTTGCATCCC 62.056 63.158 15.08 0.00 35.86 3.85
3293 3541 2.486966 GCACGAGGCTTTGCATCC 59.513 61.111 15.08 0.00 35.86 3.51
3294 3542 2.099062 CGCACGAGGCTTTGCATC 59.901 61.111 18.67 0.00 41.67 3.91
3295 3543 2.669569 ACGCACGAGGCTTTGCAT 60.670 55.556 18.67 4.13 41.67 3.96
3296 3544 3.345808 GACGCACGAGGCTTTGCA 61.346 61.111 18.67 0.00 41.67 4.08
3297 3545 4.430423 CGACGCACGAGGCTTTGC 62.430 66.667 11.05 11.05 45.77 3.68
3298 3546 2.480426 GAACGACGCACGAGGCTTTG 62.480 60.000 9.43 0.00 45.77 2.77
3299 3547 2.279918 AACGACGCACGAGGCTTT 60.280 55.556 9.43 0.00 45.77 3.51
3300 3548 2.733593 GAACGACGCACGAGGCTT 60.734 61.111 9.43 0.00 45.77 4.35
3303 3551 3.458579 CACGAACGACGCACGAGG 61.459 66.667 18.18 8.21 46.94 4.63
3304 3552 1.721257 GATCACGAACGACGCACGAG 61.721 60.000 18.18 11.82 46.94 4.18
3305 3553 1.794785 GATCACGAACGACGCACGA 60.795 57.895 18.18 0.00 46.94 4.35
3306 3554 1.334992 AAGATCACGAACGACGCACG 61.335 55.000 11.56 11.56 46.94 5.34
3307 3555 0.362512 GAAGATCACGAACGACGCAC 59.637 55.000 0.14 0.00 46.94 5.34
3308 3556 0.039888 TGAAGATCACGAACGACGCA 60.040 50.000 0.14 0.00 46.94 5.24
3309 3557 0.635731 CTGAAGATCACGAACGACGC 59.364 55.000 0.14 0.00 46.94 5.19
3311 3559 1.983972 AGCTGAAGATCACGAACGAC 58.016 50.000 0.14 0.00 0.00 4.34
3312 3560 2.328473 CAAGCTGAAGATCACGAACGA 58.672 47.619 0.14 0.00 0.00 3.85
3313 3561 1.391485 CCAAGCTGAAGATCACGAACG 59.609 52.381 0.00 0.00 0.00 3.95
3314 3562 1.129437 GCCAAGCTGAAGATCACGAAC 59.871 52.381 0.00 0.00 0.00 3.95
3315 3563 1.442769 GCCAAGCTGAAGATCACGAA 58.557 50.000 0.00 0.00 0.00 3.85
3316 3564 0.391661 GGCCAAGCTGAAGATCACGA 60.392 55.000 0.00 0.00 0.00 4.35
3317 3565 0.674581 TGGCCAAGCTGAAGATCACG 60.675 55.000 0.61 0.00 0.00 4.35
3318 3566 1.093159 CTGGCCAAGCTGAAGATCAC 58.907 55.000 7.01 0.00 0.00 3.06
3319 3567 0.034767 CCTGGCCAAGCTGAAGATCA 60.035 55.000 7.01 0.00 0.00 2.92
3320 3568 0.750911 CCCTGGCCAAGCTGAAGATC 60.751 60.000 7.01 0.00 0.00 2.75
3321 3569 1.210204 TCCCTGGCCAAGCTGAAGAT 61.210 55.000 7.01 0.00 0.00 2.40
3322 3570 1.210204 ATCCCTGGCCAAGCTGAAGA 61.210 55.000 7.01 0.00 0.00 2.87
3323 3571 0.324091 AATCCCTGGCCAAGCTGAAG 60.324 55.000 7.01 0.00 0.00 3.02
3324 3572 0.323725 GAATCCCTGGCCAAGCTGAA 60.324 55.000 7.01 0.00 0.00 3.02
3325 3573 1.304282 GAATCCCTGGCCAAGCTGA 59.696 57.895 7.01 0.72 0.00 4.26
3326 3574 1.000521 TGAATCCCTGGCCAAGCTG 60.001 57.895 7.01 0.00 0.00 4.24
3327 3575 1.000396 GTGAATCCCTGGCCAAGCT 60.000 57.895 7.01 0.00 0.00 3.74
3328 3576 2.054453 GGTGAATCCCTGGCCAAGC 61.054 63.158 7.01 0.00 0.00 4.01
3329 3577 0.682209 CTGGTGAATCCCTGGCCAAG 60.682 60.000 7.01 0.00 34.77 3.61
3330 3578 1.383799 CTGGTGAATCCCTGGCCAA 59.616 57.895 7.01 0.00 34.77 4.52
3331 3579 3.089838 CTGGTGAATCCCTGGCCA 58.910 61.111 4.71 4.71 34.77 5.36
3332 3580 2.440980 GCTGGTGAATCCCTGGCC 60.441 66.667 0.00 0.00 34.77 5.36
3333 3581 2.825836 CGCTGGTGAATCCCTGGC 60.826 66.667 0.00 0.00 34.77 4.85
3334 3582 2.124570 CCGCTGGTGAATCCCTGG 60.125 66.667 0.00 0.00 34.77 4.45
3335 3583 2.124570 CCCGCTGGTGAATCCCTG 60.125 66.667 0.00 0.00 34.77 4.45
3336 3584 3.411517 CCCCGCTGGTGAATCCCT 61.412 66.667 0.00 0.00 34.77 4.20
3338 3586 3.645268 AAGCCCCGCTGGTGAATCC 62.645 63.158 0.00 0.00 39.62 3.01
3339 3587 2.044946 AAGCCCCGCTGGTGAATC 60.045 61.111 0.00 0.00 39.62 2.52
3340 3588 2.044946 GAAGCCCCGCTGGTGAAT 60.045 61.111 0.00 0.00 39.62 2.57
3341 3589 3.551496 CTGAAGCCCCGCTGGTGAA 62.551 63.158 0.00 0.00 39.62 3.18
3342 3590 4.020617 CTGAAGCCCCGCTGGTGA 62.021 66.667 0.00 0.00 39.62 4.02
3346 3594 4.479993 CTCCCTGAAGCCCCGCTG 62.480 72.222 0.00 0.00 39.62 5.18
3353 3601 0.033699 ATTTGGAGGCTCCCTGAAGC 60.034 55.000 30.03 4.36 41.73 3.86
3354 3602 1.283029 TGATTTGGAGGCTCCCTGAAG 59.717 52.381 30.03 0.00 35.03 3.02
3355 3603 1.283029 CTGATTTGGAGGCTCCCTGAA 59.717 52.381 30.03 21.06 35.03 3.02
3356 3604 0.914644 CTGATTTGGAGGCTCCCTGA 59.085 55.000 30.03 16.16 35.03 3.86
3357 3605 0.750911 GCTGATTTGGAGGCTCCCTG 60.751 60.000 30.03 18.26 35.03 4.45
3358 3606 1.611965 GCTGATTTGGAGGCTCCCT 59.388 57.895 30.03 15.12 35.03 4.20
3359 3607 1.454663 GGCTGATTTGGAGGCTCCC 60.455 63.158 30.03 15.31 35.03 4.30
3360 3608 1.034292 GTGGCTGATTTGGAGGCTCC 61.034 60.000 26.95 26.95 36.94 4.70
3361 3609 0.034670 AGTGGCTGATTTGGAGGCTC 60.035 55.000 5.78 5.78 36.94 4.70
3362 3610 0.323178 CAGTGGCTGATTTGGAGGCT 60.323 55.000 0.00 0.00 36.94 4.58
3363 3611 0.322816 TCAGTGGCTGATTTGGAGGC 60.323 55.000 0.00 0.00 35.39 4.70
3364 3612 3.963733 TCAGTGGCTGATTTGGAGG 57.036 52.632 0.00 0.00 35.39 4.30
3372 3620 3.238232 GCTGTTGATCAGTGGCTGA 57.762 52.632 1.06 1.06 44.99 4.26
3378 3626 2.434884 CGGCCGCTGTTGATCAGT 60.435 61.111 14.67 0.00 45.23 3.41
3379 3627 3.869272 GCGGCCGCTGTTGATCAG 61.869 66.667 41.71 1.52 46.12 2.90
3397 3645 2.354259 GCATCTCACAACCTTCCTGAG 58.646 52.381 0.00 0.00 33.94 3.35
3398 3646 1.338105 CGCATCTCACAACCTTCCTGA 60.338 52.381 0.00 0.00 0.00 3.86
3399 3647 1.081892 CGCATCTCACAACCTTCCTG 58.918 55.000 0.00 0.00 0.00 3.86
3400 3648 0.687354 ACGCATCTCACAACCTTCCT 59.313 50.000 0.00 0.00 0.00 3.36
3401 3649 1.197721 CAACGCATCTCACAACCTTCC 59.802 52.381 0.00 0.00 0.00 3.46
3402 3650 1.873591 ACAACGCATCTCACAACCTTC 59.126 47.619 0.00 0.00 0.00 3.46
3403 3651 1.603802 CACAACGCATCTCACAACCTT 59.396 47.619 0.00 0.00 0.00 3.50
3404 3652 1.202639 TCACAACGCATCTCACAACCT 60.203 47.619 0.00 0.00 0.00 3.50
3405 3653 1.225855 TCACAACGCATCTCACAACC 58.774 50.000 0.00 0.00 0.00 3.77
3406 3654 2.349817 CCTTCACAACGCATCTCACAAC 60.350 50.000 0.00 0.00 0.00 3.32
3407 3655 1.872952 CCTTCACAACGCATCTCACAA 59.127 47.619 0.00 0.00 0.00 3.33
3408 3656 1.511850 CCTTCACAACGCATCTCACA 58.488 50.000 0.00 0.00 0.00 3.58
3409 3657 0.166814 GCCTTCACAACGCATCTCAC 59.833 55.000 0.00 0.00 0.00 3.51
3410 3658 0.955428 GGCCTTCACAACGCATCTCA 60.955 55.000 0.00 0.00 0.00 3.27
3411 3659 0.674895 AGGCCTTCACAACGCATCTC 60.675 55.000 0.00 0.00 0.00 2.75
3412 3660 0.250901 AAGGCCTTCACAACGCATCT 60.251 50.000 13.78 0.00 0.00 2.90
3413 3661 0.169009 GAAGGCCTTCACAACGCATC 59.831 55.000 35.71 9.30 39.31 3.91
3414 3662 0.537143 TGAAGGCCTTCACAACGCAT 60.537 50.000 38.69 4.82 43.90 4.73
3415 3663 1.153066 TGAAGGCCTTCACAACGCA 60.153 52.632 38.69 19.19 43.90 5.24
3416 3664 3.744559 TGAAGGCCTTCACAACGC 58.255 55.556 38.69 16.76 43.90 4.84
3422 3670 2.436417 CGGAAAGATTGAAGGCCTTCA 58.564 47.619 38.69 38.69 46.72 3.02
3423 3671 1.133216 GCGGAAAGATTGAAGGCCTTC 59.867 52.381 34.48 34.48 39.91 3.46
3424 3672 1.177401 GCGGAAAGATTGAAGGCCTT 58.823 50.000 20.65 20.65 0.00 4.35
3425 3673 0.038166 TGCGGAAAGATTGAAGGCCT 59.962 50.000 0.00 0.00 0.00 5.19
3426 3674 0.453390 CTGCGGAAAGATTGAAGGCC 59.547 55.000 0.00 0.00 0.00 5.19
3427 3675 1.131315 GACTGCGGAAAGATTGAAGGC 59.869 52.381 0.00 0.00 0.00 4.35
3428 3676 2.675348 GAGACTGCGGAAAGATTGAAGG 59.325 50.000 0.00 0.00 0.00 3.46
3429 3677 2.346847 CGAGACTGCGGAAAGATTGAAG 59.653 50.000 0.00 0.00 0.00 3.02
3430 3678 2.337583 CGAGACTGCGGAAAGATTGAA 58.662 47.619 0.00 0.00 0.00 2.69
3431 3679 1.996292 CGAGACTGCGGAAAGATTGA 58.004 50.000 0.00 0.00 0.00 2.57
3441 3689 3.125573 TCCTCGACCGAGACTGCG 61.126 66.667 19.70 3.97 44.53 5.18
3442 3690 2.259875 CTGTCCTCGACCGAGACTGC 62.260 65.000 19.70 7.90 44.53 4.40
3443 3691 0.956410 ACTGTCCTCGACCGAGACTG 60.956 60.000 19.70 18.41 44.53 3.51
3444 3692 0.612229 TACTGTCCTCGACCGAGACT 59.388 55.000 19.70 5.41 44.53 3.24
3445 3693 1.598601 GATACTGTCCTCGACCGAGAC 59.401 57.143 19.70 15.15 44.53 3.36
3446 3694 1.208776 TGATACTGTCCTCGACCGAGA 59.791 52.381 19.70 4.55 44.53 4.04
3447 3695 1.331138 GTGATACTGTCCTCGACCGAG 59.669 57.143 12.09 12.09 41.63 4.63
3448 3696 1.376543 GTGATACTGTCCTCGACCGA 58.623 55.000 0.00 0.00 0.00 4.69
3449 3697 0.381089 GGTGATACTGTCCTCGACCG 59.619 60.000 0.00 0.00 0.00 4.79
3450 3698 0.745468 GGGTGATACTGTCCTCGACC 59.255 60.000 0.00 0.00 0.00 4.79
3451 3699 1.405821 CTGGGTGATACTGTCCTCGAC 59.594 57.143 0.00 0.00 0.00 4.20
3452 3700 1.005569 ACTGGGTGATACTGTCCTCGA 59.994 52.381 0.00 0.00 0.00 4.04
3453 3701 1.475403 ACTGGGTGATACTGTCCTCG 58.525 55.000 0.00 0.00 0.00 4.63
3454 3702 3.100671 AGAACTGGGTGATACTGTCCTC 58.899 50.000 0.00 0.00 0.00 3.71
3455 3703 3.191888 AGAACTGGGTGATACTGTCCT 57.808 47.619 0.00 0.00 0.00 3.85
3456 3704 3.260884 TCAAGAACTGGGTGATACTGTCC 59.739 47.826 0.00 0.00 0.00 4.02
3457 3705 4.246458 GTCAAGAACTGGGTGATACTGTC 58.754 47.826 0.00 0.00 0.00 3.51
3458 3706 3.646162 TGTCAAGAACTGGGTGATACTGT 59.354 43.478 0.00 0.00 0.00 3.55
3459 3707 3.997021 GTGTCAAGAACTGGGTGATACTG 59.003 47.826 0.00 0.00 32.48 2.74
3460 3708 3.904339 AGTGTCAAGAACTGGGTGATACT 59.096 43.478 0.00 0.00 38.46 2.12
3461 3709 4.021016 AGAGTGTCAAGAACTGGGTGATAC 60.021 45.833 0.00 0.00 34.62 2.24
3462 3710 4.160329 AGAGTGTCAAGAACTGGGTGATA 58.840 43.478 0.00 0.00 0.00 2.15
3463 3711 2.975489 AGAGTGTCAAGAACTGGGTGAT 59.025 45.455 0.00 0.00 0.00 3.06
3464 3712 2.398588 AGAGTGTCAAGAACTGGGTGA 58.601 47.619 0.00 0.00 0.00 4.02
3465 3713 2.918712 AGAGTGTCAAGAACTGGGTG 57.081 50.000 0.00 0.00 0.00 4.61
3466 3714 3.933861 AAAGAGTGTCAAGAACTGGGT 57.066 42.857 0.00 0.00 0.00 4.51
3467 3715 5.467063 GTCTTAAAGAGTGTCAAGAACTGGG 59.533 44.000 0.00 0.00 0.00 4.45
3468 3716 5.467063 GGTCTTAAAGAGTGTCAAGAACTGG 59.533 44.000 0.00 0.00 32.99 4.00
3469 3717 6.049149 TGGTCTTAAAGAGTGTCAAGAACTG 58.951 40.000 0.00 0.00 36.03 3.16
3470 3718 6.127026 ACTGGTCTTAAAGAGTGTCAAGAACT 60.127 38.462 0.00 0.00 36.03 3.01
3471 3719 6.018669 CACTGGTCTTAAAGAGTGTCAAGAAC 60.019 42.308 0.00 0.00 35.68 3.01
3472 3720 6.049149 CACTGGTCTTAAAGAGTGTCAAGAA 58.951 40.000 0.00 0.00 32.74 2.52
3473 3721 5.128827 ACACTGGTCTTAAAGAGTGTCAAGA 59.871 40.000 0.00 0.00 44.48 3.02
3474 3722 5.360591 ACACTGGTCTTAAAGAGTGTCAAG 58.639 41.667 0.00 0.00 44.48 3.02
3475 3723 5.353394 ACACTGGTCTTAAAGAGTGTCAA 57.647 39.130 0.00 0.00 44.48 3.18
3479 3727 5.006746 GTGTTGACACTGGTCTTAAAGAGTG 59.993 44.000 7.01 0.00 44.61 3.51
3480 3728 5.116882 GTGTTGACACTGGTCTTAAAGAGT 58.883 41.667 7.01 0.00 44.61 3.24
3481 3729 4.511826 GGTGTTGACACTGGTCTTAAAGAG 59.488 45.833 13.40 0.00 45.73 2.85
3482 3730 4.163458 AGGTGTTGACACTGGTCTTAAAGA 59.837 41.667 13.40 0.00 45.73 2.52
3483 3731 4.273480 CAGGTGTTGACACTGGTCTTAAAG 59.727 45.833 13.40 0.00 45.73 1.85
3484 3732 4.196193 CAGGTGTTGACACTGGTCTTAAA 58.804 43.478 13.40 0.00 45.73 1.52
3485 3733 3.804036 CAGGTGTTGACACTGGTCTTAA 58.196 45.455 13.40 0.00 45.73 1.85
3486 3734 2.484770 GCAGGTGTTGACACTGGTCTTA 60.485 50.000 13.40 0.00 45.73 2.10
3487 3735 1.747206 GCAGGTGTTGACACTGGTCTT 60.747 52.381 13.40 0.00 45.73 3.01
3488 3736 0.179045 GCAGGTGTTGACACTGGTCT 60.179 55.000 13.40 0.34 45.73 3.85
3489 3737 0.179045 AGCAGGTGTTGACACTGGTC 60.179 55.000 13.40 0.00 45.73 4.02
3490 3738 0.255890 AAGCAGGTGTTGACACTGGT 59.744 50.000 13.40 11.70 45.73 4.00
3491 3739 2.254546 TAAGCAGGTGTTGACACTGG 57.745 50.000 13.40 7.56 45.73 4.00
3492 3740 3.120546 CGATTAAGCAGGTGTTGACACTG 60.121 47.826 13.40 10.55 45.73 3.66
3493 3741 3.067106 CGATTAAGCAGGTGTTGACACT 58.933 45.455 13.40 0.00 45.73 3.55
3494 3742 3.064207 TCGATTAAGCAGGTGTTGACAC 58.936 45.455 5.72 5.72 45.72 3.67
3495 3743 3.394674 TCGATTAAGCAGGTGTTGACA 57.605 42.857 0.00 0.00 0.00 3.58
3496 3744 3.684788 ACATCGATTAAGCAGGTGTTGAC 59.315 43.478 0.00 0.00 0.00 3.18
3497 3745 3.932710 GACATCGATTAAGCAGGTGTTGA 59.067 43.478 0.00 0.00 0.00 3.18
3498 3746 3.063997 GGACATCGATTAAGCAGGTGTTG 59.936 47.826 0.00 0.00 0.00 3.33
3499 3747 3.270877 GGACATCGATTAAGCAGGTGTT 58.729 45.455 0.00 0.00 0.00 3.32
3500 3748 2.236146 TGGACATCGATTAAGCAGGTGT 59.764 45.455 0.00 2.00 0.00 4.16
3501 3749 2.609459 GTGGACATCGATTAAGCAGGTG 59.391 50.000 0.00 0.00 0.00 4.00
3502 3750 2.236146 TGTGGACATCGATTAAGCAGGT 59.764 45.455 0.00 0.00 0.00 4.00
3503 3751 2.609459 GTGTGGACATCGATTAAGCAGG 59.391 50.000 0.00 0.00 0.00 4.85
3504 3752 2.282555 CGTGTGGACATCGATTAAGCAG 59.717 50.000 0.00 0.00 0.00 4.24
3505 3753 2.267426 CGTGTGGACATCGATTAAGCA 58.733 47.619 0.00 0.00 0.00 3.91
3506 3754 1.593006 CCGTGTGGACATCGATTAAGC 59.407 52.381 0.00 0.00 37.49 3.09
3507 3755 1.593006 GCCGTGTGGACATCGATTAAG 59.407 52.381 0.00 0.00 37.49 1.85
3508 3756 1.647346 GCCGTGTGGACATCGATTAA 58.353 50.000 0.00 0.00 37.49 1.40
3509 3757 0.526739 CGCCGTGTGGACATCGATTA 60.527 55.000 0.00 0.00 37.49 1.75
3510 3758 1.809619 CGCCGTGTGGACATCGATT 60.810 57.895 0.00 0.00 37.49 3.34
3511 3759 2.202743 CGCCGTGTGGACATCGAT 60.203 61.111 0.00 0.00 37.49 3.59
3512 3760 1.864725 TAACGCCGTGTGGACATCGA 61.865 55.000 0.00 0.00 37.49 3.59
3513 3761 0.804544 ATAACGCCGTGTGGACATCG 60.805 55.000 0.00 0.00 37.49 3.84
3514 3762 1.062002 CAATAACGCCGTGTGGACATC 59.938 52.381 0.00 0.00 37.49 3.06
3515 3763 1.083489 CAATAACGCCGTGTGGACAT 58.917 50.000 0.00 0.00 37.49 3.06
3516 3764 0.033642 TCAATAACGCCGTGTGGACA 59.966 50.000 0.00 0.00 37.49 4.02
3517 3765 1.149987 TTCAATAACGCCGTGTGGAC 58.850 50.000 0.00 0.00 37.49 4.02
3518 3766 1.880271 TTTCAATAACGCCGTGTGGA 58.120 45.000 0.00 0.00 37.49 4.02
3519 3767 2.690173 TTTTCAATAACGCCGTGTGG 57.310 45.000 0.00 0.00 38.77 4.17
3520 3768 7.403421 TCTATAATTTTCAATAACGCCGTGTG 58.597 34.615 0.00 0.00 0.00 3.82
3521 3769 7.279313 ACTCTATAATTTTCAATAACGCCGTGT 59.721 33.333 0.00 0.00 0.00 4.49
3522 3770 7.627340 ACTCTATAATTTTCAATAACGCCGTG 58.373 34.615 0.00 0.00 0.00 4.94
3523 3771 7.781548 ACTCTATAATTTTCAATAACGCCGT 57.218 32.000 0.00 0.00 0.00 5.68
3524 3772 7.797123 GGAACTCTATAATTTTCAATAACGCCG 59.203 37.037 0.00 0.00 0.00 6.46
3525 3773 8.837389 AGGAACTCTATAATTTTCAATAACGCC 58.163 33.333 0.00 0.00 0.00 5.68
3542 3790 9.310449 GGTGTATCTGGAAATATAGGAACTCTA 57.690 37.037 0.00 0.00 41.75 2.43
3543 3791 7.789831 TGGTGTATCTGGAAATATAGGAACTCT 59.210 37.037 0.00 0.00 41.75 3.24
3544 3792 7.963532 TGGTGTATCTGGAAATATAGGAACTC 58.036 38.462 0.00 0.00 41.75 3.01
3545 3793 7.931015 TGGTGTATCTGGAAATATAGGAACT 57.069 36.000 0.00 0.00 46.37 3.01
3546 3794 9.877178 CTATGGTGTATCTGGAAATATAGGAAC 57.123 37.037 0.00 0.00 0.00 3.62
3547 3795 9.837681 TCTATGGTGTATCTGGAAATATAGGAA 57.162 33.333 0.00 0.00 0.00 3.36
3548 3796 9.837681 TTCTATGGTGTATCTGGAAATATAGGA 57.162 33.333 0.00 0.00 0.00 2.94
3549 3797 9.877178 GTTCTATGGTGTATCTGGAAATATAGG 57.123 37.037 0.00 0.00 0.00 2.57
3552 3800 9.561069 GTTGTTCTATGGTGTATCTGGAAATAT 57.439 33.333 0.00 0.00 0.00 1.28
3553 3801 8.544622 TGTTGTTCTATGGTGTATCTGGAAATA 58.455 33.333 0.00 0.00 0.00 1.40
3554 3802 7.402054 TGTTGTTCTATGGTGTATCTGGAAAT 58.598 34.615 0.00 0.00 0.00 2.17
3555 3803 6.774673 TGTTGTTCTATGGTGTATCTGGAAA 58.225 36.000 0.00 0.00 0.00 3.13
3556 3804 6.367374 TGTTGTTCTATGGTGTATCTGGAA 57.633 37.500 0.00 0.00 0.00 3.53
3557 3805 5.626809 GCTGTTGTTCTATGGTGTATCTGGA 60.627 44.000 0.00 0.00 0.00 3.86
3558 3806 4.572389 GCTGTTGTTCTATGGTGTATCTGG 59.428 45.833 0.00 0.00 0.00 3.86
3559 3807 5.178061 TGCTGTTGTTCTATGGTGTATCTG 58.822 41.667 0.00 0.00 0.00 2.90
3560 3808 5.420725 TGCTGTTGTTCTATGGTGTATCT 57.579 39.130 0.00 0.00 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.