Multiple sequence alignment - TraesCS1D01G142000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G142000 | chr1D | 100.000 | 5367 | 0 | 0 | 1 | 5367 | 196490045 | 196484679 | 0.000000e+00 | 9912.0 |
1 | TraesCS1D01G142000 | chr1B | 94.289 | 2031 | 79 | 21 | 3149 | 5151 | 269039093 | 269041114 | 0.000000e+00 | 3073.0 |
2 | TraesCS1D01G142000 | chr1B | 93.967 | 1674 | 51 | 25 | 806 | 2449 | 269036649 | 269038302 | 0.000000e+00 | 2486.0 |
3 | TraesCS1D01G142000 | chr1B | 94.118 | 697 | 30 | 4 | 2489 | 3175 | 269038308 | 269039003 | 0.000000e+00 | 1050.0 |
4 | TraesCS1D01G142000 | chr1B | 91.092 | 595 | 21 | 14 | 162 | 737 | 269035966 | 269036547 | 0.000000e+00 | 776.0 |
5 | TraesCS1D01G142000 | chr1A | 90.405 | 1532 | 52 | 38 | 460 | 1932 | 245537179 | 245535684 | 0.000000e+00 | 1927.0 |
6 | TraesCS1D01G142000 | chr1A | 94.705 | 1171 | 42 | 12 | 3049 | 4211 | 245529375 | 245528217 | 0.000000e+00 | 1801.0 |
7 | TraesCS1D01G142000 | chr1A | 94.918 | 610 | 30 | 1 | 4527 | 5136 | 245527622 | 245527014 | 0.000000e+00 | 953.0 |
8 | TraesCS1D01G142000 | chr1A | 95.767 | 567 | 21 | 2 | 2489 | 3053 | 245535075 | 245534510 | 0.000000e+00 | 911.0 |
9 | TraesCS1D01G142000 | chr1A | 95.164 | 517 | 19 | 4 | 1935 | 2449 | 245535593 | 245535081 | 0.000000e+00 | 811.0 |
10 | TraesCS1D01G142000 | chr1A | 94.294 | 333 | 7 | 3 | 4197 | 4528 | 245528057 | 245527736 | 2.890000e-137 | 499.0 |
11 | TraesCS1D01G142000 | chr1A | 90.734 | 259 | 8 | 6 | 168 | 411 | 245537433 | 245537176 | 1.110000e-86 | 331.0 |
12 | TraesCS1D01G142000 | chr1A | 90.367 | 218 | 16 | 5 | 5152 | 5367 | 429980952 | 429980738 | 1.140000e-71 | 281.0 |
13 | TraesCS1D01G142000 | chr3D | 92.661 | 218 | 12 | 4 | 5152 | 5367 | 482259754 | 482259539 | 1.450000e-80 | 311.0 |
14 | TraesCS1D01G142000 | chr3D | 91.284 | 218 | 17 | 2 | 5152 | 5367 | 39617961 | 39618178 | 4.060000e-76 | 296.0 |
15 | TraesCS1D01G142000 | chr3D | 90.826 | 218 | 18 | 2 | 5152 | 5367 | 39619219 | 39619436 | 1.890000e-74 | 291.0 |
16 | TraesCS1D01G142000 | chr3D | 90.826 | 218 | 16 | 4 | 5152 | 5367 | 39616915 | 39617130 | 6.800000e-74 | 289.0 |
17 | TraesCS1D01G142000 | chr6A | 91.284 | 218 | 15 | 4 | 5152 | 5367 | 74979165 | 74978950 | 1.460000e-75 | 294.0 |
18 | TraesCS1D01G142000 | chr6A | 90.367 | 218 | 17 | 4 | 5152 | 5367 | 74978198 | 74978413 | 3.160000e-72 | 283.0 |
19 | TraesCS1D01G142000 | chr5D | 90.278 | 216 | 19 | 2 | 5153 | 5367 | 190052280 | 190052494 | 1.140000e-71 | 281.0 |
20 | TraesCS1D01G142000 | chr5D | 100.000 | 28 | 0 | 0 | 2459 | 2486 | 393800006 | 393800033 | 1.000000e-02 | 52.8 |
21 | TraesCS1D01G142000 | chr2D | 90.000 | 220 | 16 | 5 | 5151 | 5367 | 466813867 | 466813651 | 4.090000e-71 | 279.0 |
22 | TraesCS1D01G142000 | chr2D | 97.826 | 46 | 1 | 0 | 2445 | 2490 | 17068358 | 17068403 | 4.460000e-11 | 80.5 |
23 | TraesCS1D01G142000 | chr2D | 95.455 | 44 | 2 | 0 | 2445 | 2488 | 246547668 | 246547711 | 2.680000e-08 | 71.3 |
24 | TraesCS1D01G142000 | chr4D | 87.200 | 125 | 15 | 1 | 1029 | 1152 | 476865628 | 476865752 | 2.020000e-29 | 141.0 |
25 | TraesCS1D01G142000 | chr4D | 91.954 | 87 | 5 | 2 | 2721 | 2807 | 476867231 | 476867315 | 2.630000e-23 | 121.0 |
26 | TraesCS1D01G142000 | chr4B | 86.667 | 120 | 16 | 0 | 1029 | 1148 | 600917282 | 600917401 | 3.370000e-27 | 134.0 |
27 | TraesCS1D01G142000 | chr4B | 91.954 | 87 | 5 | 2 | 2721 | 2807 | 600918933 | 600919017 | 2.630000e-23 | 121.0 |
28 | TraesCS1D01G142000 | chr4A | 86.667 | 120 | 16 | 0 | 1029 | 1148 | 683606213 | 683606332 | 3.370000e-27 | 134.0 |
29 | TraesCS1D01G142000 | chr4A | 90.805 | 87 | 6 | 2 | 2721 | 2807 | 683607829 | 683607913 | 1.220000e-21 | 115.0 |
30 | TraesCS1D01G142000 | chr3B | 97.674 | 43 | 1 | 0 | 2446 | 2488 | 181678900 | 181678858 | 2.070000e-09 | 75.0 |
31 | TraesCS1D01G142000 | chr6B | 95.556 | 45 | 2 | 0 | 2446 | 2490 | 716350777 | 716350733 | 7.460000e-09 | 73.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G142000 | chr1D | 196484679 | 196490045 | 5366 | True | 9912.000000 | 9912 | 100.000000 | 1 | 5367 | 1 | chr1D.!!$R1 | 5366 |
1 | TraesCS1D01G142000 | chr1B | 269035966 | 269041114 | 5148 | False | 1846.250000 | 3073 | 93.366500 | 162 | 5151 | 4 | chr1B.!!$F1 | 4989 |
2 | TraesCS1D01G142000 | chr1A | 245527014 | 245529375 | 2361 | True | 1084.333333 | 1801 | 94.639000 | 3049 | 5136 | 3 | chr1A.!!$R2 | 2087 |
3 | TraesCS1D01G142000 | chr1A | 245534510 | 245537433 | 2923 | True | 995.000000 | 1927 | 93.017500 | 168 | 3053 | 4 | chr1A.!!$R3 | 2885 |
4 | TraesCS1D01G142000 | chr3D | 39616915 | 39619436 | 2521 | False | 292.000000 | 296 | 90.978667 | 5152 | 5367 | 3 | chr3D.!!$F1 | 215 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
32 | 33 | 0.031585 | CGGACGGATGCGAAAGGATA | 59.968 | 55.000 | 15.49 | 0.00 | 44.47 | 2.59 | F |
133 | 134 | 0.037790 | AGAAGTCTTCCAGCGAGTGC | 60.038 | 55.000 | 9.04 | 0.00 | 43.24 | 4.40 | F |
1844 | 1986 | 0.242825 | TGGCTCGTACAGTTCGAAGG | 59.757 | 55.000 | 0.00 | 0.00 | 36.89 | 3.46 | F |
1888 | 2030 | 0.469518 | CTACCCCTTAGACCCGGGAG | 60.470 | 65.000 | 32.02 | 14.55 | 43.44 | 4.30 | F |
3359 | 3717 | 1.484653 | TGCTAGTGCATACCGGTCAAT | 59.515 | 47.619 | 12.40 | 4.91 | 45.31 | 2.57 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1880 | 2022 | 1.990060 | CCACTGTGATCTCCCGGGT | 60.990 | 63.158 | 22.86 | 0.0 | 0.00 | 5.28 | R |
1885 | 2027 | 2.939103 | GCATAACACCACTGTGATCTCC | 59.061 | 50.000 | 9.86 | 0.0 | 45.76 | 3.71 | R |
3635 | 3994 | 0.675208 | AGCTCTCTCTCTTCGCGACA | 60.675 | 55.000 | 9.15 | 0.0 | 0.00 | 4.35 | R |
3763 | 4122 | 9.243637 | TCAGGAAAAATAACAATTTCTGTTTCG | 57.756 | 29.630 | 0.00 | 0.0 | 46.49 | 3.46 | R |
4961 | 5636 | 0.250338 | GTCAAGTGAACTCCGGGCTT | 60.250 | 55.000 | 0.00 | 0.0 | 0.00 | 4.35 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 2.577593 | GTCCCACTACCTGCGGAC | 59.422 | 66.667 | 0.00 | 0.00 | 34.79 | 4.79 |
18 | 19 | 3.066190 | TCCCACTACCTGCGGACG | 61.066 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
19 | 20 | 4.143333 | CCCACTACCTGCGGACGG | 62.143 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
20 | 21 | 3.066190 | CCACTACCTGCGGACGGA | 61.066 | 66.667 | 0.00 | 0.00 | 0.00 | 4.69 |
21 | 22 | 2.423898 | CCACTACCTGCGGACGGAT | 61.424 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
22 | 23 | 1.226974 | CACTACCTGCGGACGGATG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
23 | 24 | 2.279517 | CTACCTGCGGACGGATGC | 60.280 | 66.667 | 0.00 | 0.00 | 0.00 | 3.91 |
24 | 25 | 4.201679 | TACCTGCGGACGGATGCG | 62.202 | 66.667 | 4.58 | 4.58 | 43.57 | 4.73 |
26 | 27 | 4.812476 | CCTGCGGACGGATGCGAA | 62.812 | 66.667 | 15.49 | 0.00 | 43.37 | 4.70 |
27 | 28 | 2.813474 | CTGCGGACGGATGCGAAA | 60.813 | 61.111 | 15.49 | 0.00 | 43.37 | 3.46 |
28 | 29 | 2.802667 | CTGCGGACGGATGCGAAAG | 61.803 | 63.158 | 15.49 | 4.58 | 43.37 | 2.62 |
29 | 30 | 3.564027 | GCGGACGGATGCGAAAGG | 61.564 | 66.667 | 15.49 | 0.27 | 43.37 | 3.11 |
30 | 31 | 2.183300 | CGGACGGATGCGAAAGGA | 59.817 | 61.111 | 15.49 | 0.00 | 43.37 | 3.36 |
32 | 33 | 0.031585 | CGGACGGATGCGAAAGGATA | 59.968 | 55.000 | 15.49 | 0.00 | 44.47 | 2.59 |
33 | 34 | 1.336887 | CGGACGGATGCGAAAGGATAT | 60.337 | 52.381 | 15.49 | 0.00 | 44.47 | 1.63 |
34 | 35 | 2.767505 | GGACGGATGCGAAAGGATATT | 58.232 | 47.619 | 15.49 | 0.00 | 44.47 | 1.28 |
35 | 36 | 3.139077 | GGACGGATGCGAAAGGATATTT | 58.861 | 45.455 | 15.49 | 0.00 | 44.47 | 1.40 |
36 | 37 | 3.058914 | GGACGGATGCGAAAGGATATTTG | 60.059 | 47.826 | 15.49 | 0.00 | 44.47 | 2.32 |
37 | 38 | 3.541632 | ACGGATGCGAAAGGATATTTGT | 58.458 | 40.909 | 15.49 | 0.00 | 44.47 | 2.83 |
38 | 39 | 3.312421 | ACGGATGCGAAAGGATATTTGTG | 59.688 | 43.478 | 15.49 | 0.00 | 44.47 | 3.33 |
39 | 40 | 3.559655 | CGGATGCGAAAGGATATTTGTGA | 59.440 | 43.478 | 0.00 | 0.00 | 44.47 | 3.58 |
40 | 41 | 4.319046 | CGGATGCGAAAGGATATTTGTGAG | 60.319 | 45.833 | 0.00 | 0.00 | 44.47 | 3.51 |
41 | 42 | 4.576463 | GGATGCGAAAGGATATTTGTGAGT | 59.424 | 41.667 | 0.00 | 0.00 | 44.47 | 3.41 |
42 | 43 | 5.066505 | GGATGCGAAAGGATATTTGTGAGTT | 59.933 | 40.000 | 0.00 | 0.00 | 44.47 | 3.01 |
43 | 44 | 5.295431 | TGCGAAAGGATATTTGTGAGTTG | 57.705 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
44 | 45 | 4.759693 | TGCGAAAGGATATTTGTGAGTTGT | 59.240 | 37.500 | 0.00 | 0.00 | 0.00 | 3.32 |
45 | 46 | 5.106712 | TGCGAAAGGATATTTGTGAGTTGTC | 60.107 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
46 | 47 | 5.550981 | CGAAAGGATATTTGTGAGTTGTCG | 58.449 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
47 | 48 | 5.120208 | CGAAAGGATATTTGTGAGTTGTCGT | 59.880 | 40.000 | 0.00 | 0.00 | 0.00 | 4.34 |
48 | 49 | 6.347402 | CGAAAGGATATTTGTGAGTTGTCGTT | 60.347 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
49 | 50 | 5.862924 | AGGATATTTGTGAGTTGTCGTTG | 57.137 | 39.130 | 0.00 | 0.00 | 0.00 | 4.10 |
50 | 51 | 4.695455 | AGGATATTTGTGAGTTGTCGTTGG | 59.305 | 41.667 | 0.00 | 0.00 | 0.00 | 3.77 |
51 | 52 | 4.693566 | GGATATTTGTGAGTTGTCGTTGGA | 59.306 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
52 | 53 | 5.163854 | GGATATTTGTGAGTTGTCGTTGGAG | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 3.86 |
53 | 54 | 2.971660 | TTGTGAGTTGTCGTTGGAGA | 57.028 | 45.000 | 0.00 | 0.00 | 0.00 | 3.71 |
54 | 55 | 3.469008 | TTGTGAGTTGTCGTTGGAGAT | 57.531 | 42.857 | 0.00 | 0.00 | 0.00 | 2.75 |
55 | 56 | 2.754472 | TGTGAGTTGTCGTTGGAGATG | 58.246 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
56 | 57 | 1.461127 | GTGAGTTGTCGTTGGAGATGC | 59.539 | 52.381 | 0.00 | 0.00 | 0.00 | 3.91 |
57 | 58 | 1.079503 | GAGTTGTCGTTGGAGATGCC | 58.920 | 55.000 | 0.00 | 0.00 | 37.10 | 4.40 |
58 | 59 | 0.687354 | AGTTGTCGTTGGAGATGCCT | 59.313 | 50.000 | 0.00 | 0.00 | 37.63 | 4.75 |
59 | 60 | 1.072331 | AGTTGTCGTTGGAGATGCCTT | 59.928 | 47.619 | 0.00 | 0.00 | 37.63 | 4.35 |
60 | 61 | 2.301870 | AGTTGTCGTTGGAGATGCCTTA | 59.698 | 45.455 | 0.00 | 0.00 | 37.63 | 2.69 |
61 | 62 | 3.055094 | AGTTGTCGTTGGAGATGCCTTAT | 60.055 | 43.478 | 0.00 | 0.00 | 37.63 | 1.73 |
62 | 63 | 2.905075 | TGTCGTTGGAGATGCCTTATG | 58.095 | 47.619 | 0.00 | 0.00 | 37.63 | 1.90 |
63 | 64 | 2.499693 | TGTCGTTGGAGATGCCTTATGA | 59.500 | 45.455 | 0.00 | 0.00 | 37.63 | 2.15 |
64 | 65 | 3.134623 | TGTCGTTGGAGATGCCTTATGAT | 59.865 | 43.478 | 0.00 | 0.00 | 37.63 | 2.45 |
65 | 66 | 4.343814 | TGTCGTTGGAGATGCCTTATGATA | 59.656 | 41.667 | 0.00 | 0.00 | 37.63 | 2.15 |
66 | 67 | 5.163353 | TGTCGTTGGAGATGCCTTATGATAA | 60.163 | 40.000 | 0.00 | 0.00 | 37.63 | 1.75 |
67 | 68 | 5.406780 | GTCGTTGGAGATGCCTTATGATAAG | 59.593 | 44.000 | 5.23 | 5.23 | 37.63 | 1.73 |
68 | 69 | 5.304357 | TCGTTGGAGATGCCTTATGATAAGA | 59.696 | 40.000 | 13.56 | 0.00 | 37.63 | 2.10 |
69 | 70 | 6.014242 | TCGTTGGAGATGCCTTATGATAAGAT | 60.014 | 38.462 | 13.56 | 0.20 | 37.63 | 2.40 |
70 | 71 | 7.178451 | TCGTTGGAGATGCCTTATGATAAGATA | 59.822 | 37.037 | 13.56 | 2.76 | 37.63 | 1.98 |
71 | 72 | 7.984050 | CGTTGGAGATGCCTTATGATAAGATAT | 59.016 | 37.037 | 13.56 | 7.21 | 37.63 | 1.63 |
86 | 87 | 9.624373 | ATGATAAGATATAATCCCATTGTCAGC | 57.376 | 33.333 | 0.00 | 0.00 | 0.00 | 4.26 |
87 | 88 | 7.765819 | TGATAAGATATAATCCCATTGTCAGCG | 59.234 | 37.037 | 0.00 | 0.00 | 0.00 | 5.18 |
88 | 89 | 5.489792 | AGATATAATCCCATTGTCAGCGT | 57.510 | 39.130 | 0.00 | 0.00 | 0.00 | 5.07 |
89 | 90 | 5.240891 | AGATATAATCCCATTGTCAGCGTG | 58.759 | 41.667 | 0.00 | 0.00 | 0.00 | 5.34 |
90 | 91 | 3.558931 | ATAATCCCATTGTCAGCGTGA | 57.441 | 42.857 | 0.00 | 0.00 | 0.00 | 4.35 |
91 | 92 | 2.198827 | AATCCCATTGTCAGCGTGAA | 57.801 | 45.000 | 0.00 | 0.00 | 0.00 | 3.18 |
92 | 93 | 1.453155 | ATCCCATTGTCAGCGTGAAC | 58.547 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
93 | 94 | 0.107643 | TCCCATTGTCAGCGTGAACA | 59.892 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
94 | 95 | 0.950836 | CCCATTGTCAGCGTGAACAA | 59.049 | 50.000 | 2.05 | 2.05 | 0.00 | 2.83 |
95 | 96 | 1.336440 | CCCATTGTCAGCGTGAACAAA | 59.664 | 47.619 | 3.42 | 0.00 | 0.00 | 2.83 |
96 | 97 | 2.223688 | CCCATTGTCAGCGTGAACAAAA | 60.224 | 45.455 | 3.42 | 0.00 | 0.00 | 2.44 |
97 | 98 | 3.443037 | CCATTGTCAGCGTGAACAAAAA | 58.557 | 40.909 | 3.42 | 0.00 | 0.00 | 1.94 |
98 | 99 | 3.242712 | CCATTGTCAGCGTGAACAAAAAC | 59.757 | 43.478 | 3.42 | 0.00 | 0.00 | 2.43 |
99 | 100 | 2.166741 | TGTCAGCGTGAACAAAAACG | 57.833 | 45.000 | 0.00 | 0.00 | 42.61 | 3.60 |
103 | 104 | 3.207877 | CGTGAACAAAAACGCGCC | 58.792 | 55.556 | 5.73 | 0.00 | 33.62 | 6.53 |
104 | 105 | 1.583967 | CGTGAACAAAAACGCGCCA | 60.584 | 52.632 | 5.73 | 0.00 | 33.62 | 5.69 |
105 | 106 | 1.793480 | CGTGAACAAAAACGCGCCAC | 61.793 | 55.000 | 5.73 | 0.00 | 33.62 | 5.01 |
116 | 117 | 3.637714 | GCGCCACGAGACAAAAGA | 58.362 | 55.556 | 0.00 | 0.00 | 0.00 | 2.52 |
117 | 118 | 1.938861 | GCGCCACGAGACAAAAGAA | 59.061 | 52.632 | 0.00 | 0.00 | 0.00 | 2.52 |
118 | 119 | 0.110644 | GCGCCACGAGACAAAAGAAG | 60.111 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
119 | 120 | 1.217882 | CGCCACGAGACAAAAGAAGT | 58.782 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
120 | 121 | 1.192534 | CGCCACGAGACAAAAGAAGTC | 59.807 | 52.381 | 0.00 | 0.00 | 36.26 | 3.01 |
122 | 123 | 2.872858 | GCCACGAGACAAAAGAAGTCTT | 59.127 | 45.455 | 0.00 | 0.00 | 45.79 | 3.01 |
123 | 124 | 3.059529 | GCCACGAGACAAAAGAAGTCTTC | 60.060 | 47.826 | 4.26 | 4.26 | 45.79 | 2.87 |
124 | 125 | 3.495001 | CCACGAGACAAAAGAAGTCTTCC | 59.505 | 47.826 | 9.04 | 0.00 | 45.79 | 3.46 |
125 | 126 | 4.119862 | CACGAGACAAAAGAAGTCTTCCA | 58.880 | 43.478 | 9.04 | 0.00 | 45.79 | 3.53 |
126 | 127 | 4.210120 | CACGAGACAAAAGAAGTCTTCCAG | 59.790 | 45.833 | 9.04 | 0.03 | 45.79 | 3.86 |
127 | 128 | 3.185391 | CGAGACAAAAGAAGTCTTCCAGC | 59.815 | 47.826 | 9.04 | 0.00 | 45.79 | 4.85 |
128 | 129 | 3.134458 | AGACAAAAGAAGTCTTCCAGCG | 58.866 | 45.455 | 9.04 | 0.00 | 43.47 | 5.18 |
129 | 130 | 3.131396 | GACAAAAGAAGTCTTCCAGCGA | 58.869 | 45.455 | 9.04 | 0.00 | 34.61 | 4.93 |
130 | 131 | 3.134458 | ACAAAAGAAGTCTTCCAGCGAG | 58.866 | 45.455 | 9.04 | 0.00 | 34.61 | 5.03 |
131 | 132 | 3.134458 | CAAAAGAAGTCTTCCAGCGAGT | 58.866 | 45.455 | 9.04 | 0.00 | 34.61 | 4.18 |
132 | 133 | 2.447244 | AAGAAGTCTTCCAGCGAGTG | 57.553 | 50.000 | 9.04 | 0.00 | 0.00 | 3.51 |
133 | 134 | 0.037790 | AGAAGTCTTCCAGCGAGTGC | 60.038 | 55.000 | 9.04 | 0.00 | 43.24 | 4.40 |
134 | 135 | 1.004440 | AAGTCTTCCAGCGAGTGCC | 60.004 | 57.895 | 0.00 | 0.00 | 44.31 | 5.01 |
135 | 136 | 2.771763 | AAGTCTTCCAGCGAGTGCCG | 62.772 | 60.000 | 0.00 | 0.00 | 44.31 | 5.69 |
136 | 137 | 3.303135 | TCTTCCAGCGAGTGCCGT | 61.303 | 61.111 | 0.00 | 0.00 | 44.31 | 5.68 |
137 | 138 | 2.357517 | CTTCCAGCGAGTGCCGTT | 60.358 | 61.111 | 0.00 | 0.00 | 44.31 | 4.44 |
138 | 139 | 1.961277 | CTTCCAGCGAGTGCCGTTT | 60.961 | 57.895 | 0.00 | 0.00 | 44.31 | 3.60 |
139 | 140 | 1.901650 | CTTCCAGCGAGTGCCGTTTC | 61.902 | 60.000 | 0.00 | 0.00 | 44.31 | 2.78 |
140 | 141 | 3.777925 | CCAGCGAGTGCCGTTTCG | 61.778 | 66.667 | 0.00 | 0.00 | 44.31 | 3.46 |
141 | 142 | 3.036084 | CAGCGAGTGCCGTTTCGT | 61.036 | 61.111 | 0.00 | 0.00 | 44.31 | 3.85 |
142 | 143 | 3.036084 | AGCGAGTGCCGTTTCGTG | 61.036 | 61.111 | 0.00 | 0.00 | 44.31 | 4.35 |
143 | 144 | 4.719616 | GCGAGTGCCGTTTCGTGC | 62.720 | 66.667 | 0.00 | 0.00 | 41.15 | 5.34 |
144 | 145 | 3.334751 | CGAGTGCCGTTTCGTGCA | 61.335 | 61.111 | 0.00 | 0.00 | 32.67 | 4.57 |
145 | 146 | 2.248431 | GAGTGCCGTTTCGTGCAC | 59.752 | 61.111 | 19.51 | 19.51 | 46.21 | 4.57 |
147 | 148 | 2.351888 | GTGCCGTTTCGTGCACAC | 60.352 | 61.111 | 18.64 | 6.69 | 45.66 | 3.82 |
148 | 149 | 2.820037 | TGCCGTTTCGTGCACACA | 60.820 | 55.556 | 18.64 | 0.00 | 30.88 | 3.72 |
149 | 150 | 2.052237 | GCCGTTTCGTGCACACAG | 60.052 | 61.111 | 18.64 | 0.04 | 0.00 | 3.66 |
150 | 151 | 2.819552 | GCCGTTTCGTGCACACAGT | 61.820 | 57.895 | 18.64 | 0.00 | 0.00 | 3.55 |
151 | 152 | 1.719117 | CCGTTTCGTGCACACAGTT | 59.281 | 52.632 | 18.64 | 0.00 | 0.00 | 3.16 |
152 | 153 | 0.931702 | CCGTTTCGTGCACACAGTTA | 59.068 | 50.000 | 18.64 | 0.00 | 0.00 | 2.24 |
153 | 154 | 1.332552 | CCGTTTCGTGCACACAGTTAC | 60.333 | 52.381 | 18.64 | 4.72 | 0.00 | 2.50 |
154 | 155 | 1.325037 | CGTTTCGTGCACACAGTTACA | 59.675 | 47.619 | 18.64 | 0.00 | 0.00 | 2.41 |
155 | 156 | 2.700694 | GTTTCGTGCACACAGTTACAC | 58.299 | 47.619 | 18.64 | 0.00 | 0.00 | 2.90 |
160 | 161 | 2.969055 | GTGCACACAGTTACACGAAAG | 58.031 | 47.619 | 13.17 | 0.00 | 0.00 | 2.62 |
161 | 162 | 1.937223 | TGCACACAGTTACACGAAAGG | 59.063 | 47.619 | 0.00 | 0.00 | 0.00 | 3.11 |
162 | 163 | 1.333791 | GCACACAGTTACACGAAAGGC | 60.334 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
163 | 164 | 1.937223 | CACACAGTTACACGAAAGGCA | 59.063 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
164 | 165 | 1.937899 | ACACAGTTACACGAAAGGCAC | 59.062 | 47.619 | 0.00 | 0.00 | 0.00 | 5.01 |
166 | 167 | 2.221055 | CACAGTTACACGAAAGGCACTC | 59.779 | 50.000 | 0.00 | 0.00 | 38.49 | 3.51 |
197 | 198 | 6.088824 | ACAACCGAAAGATACAAGTACGTAG | 58.911 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
215 | 220 | 4.049186 | CGTAGCCGTAATATCATATGCCC | 58.951 | 47.826 | 0.00 | 0.00 | 0.00 | 5.36 |
332 | 344 | 0.451135 | CACGCAGACAAAAGCTACGC | 60.451 | 55.000 | 0.00 | 0.00 | 0.00 | 4.42 |
379 | 391 | 2.550487 | GGTGTTGCATGACGCCTAA | 58.450 | 52.632 | 12.89 | 0.00 | 44.81 | 2.69 |
380 | 392 | 0.447801 | GGTGTTGCATGACGCCTAAG | 59.552 | 55.000 | 12.89 | 0.00 | 44.81 | 2.18 |
384 | 396 | 3.001330 | GTGTTGCATGACGCCTAAGATAC | 59.999 | 47.826 | 0.00 | 0.00 | 41.33 | 2.24 |
385 | 397 | 3.118775 | TGTTGCATGACGCCTAAGATACT | 60.119 | 43.478 | 0.00 | 0.00 | 41.33 | 2.12 |
386 | 398 | 3.097877 | TGCATGACGCCTAAGATACTG | 57.902 | 47.619 | 0.00 | 0.00 | 41.33 | 2.74 |
387 | 399 | 1.795286 | GCATGACGCCTAAGATACTGC | 59.205 | 52.381 | 0.00 | 0.00 | 32.94 | 4.40 |
417 | 434 | 0.618680 | CTGGTCTGGTCTCCCCATCA | 60.619 | 60.000 | 0.00 | 0.00 | 44.15 | 3.07 |
453 | 470 | 5.046529 | ACACATCCTACTACTCTACGTACG | 58.953 | 45.833 | 15.01 | 15.01 | 0.00 | 3.67 |
454 | 471 | 5.046529 | CACATCCTACTACTCTACGTACGT | 58.953 | 45.833 | 25.98 | 25.98 | 0.00 | 3.57 |
455 | 472 | 6.183360 | ACACATCCTACTACTCTACGTACGTA | 60.183 | 42.308 | 25.41 | 25.41 | 0.00 | 3.57 |
456 | 473 | 6.143118 | CACATCCTACTACTCTACGTACGTAC | 59.857 | 46.154 | 23.60 | 15.90 | 0.00 | 3.67 |
947 | 1030 | 0.764752 | CCTCTAAATCCTCCGCCCCT | 60.765 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
963 | 1046 | 3.866582 | CTCCCCGCCTGACCATCC | 61.867 | 72.222 | 0.00 | 0.00 | 0.00 | 3.51 |
1168 | 1260 | 3.220110 | ACGTCTTCTTAGTCTCACACCA | 58.780 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
1298 | 1406 | 2.767394 | TGGCAGTAGGTAGCGGATTAAA | 59.233 | 45.455 | 0.00 | 0.00 | 0.00 | 1.52 |
1378 | 1486 | 1.446966 | GTCCGAGCTGTTCTCTGCC | 60.447 | 63.158 | 0.00 | 0.00 | 39.70 | 4.85 |
1461 | 1584 | 5.525199 | GAGTTAGTCTCCATGCTAAGTAGC | 58.475 | 45.833 | 3.26 | 3.26 | 41.96 | 3.58 |
1602 | 1726 | 2.031157 | ACAAAACCTGATTGCGCACTAC | 60.031 | 45.455 | 11.12 | 5.00 | 0.00 | 2.73 |
1642 | 1766 | 7.170658 | GTGCTACCTTATTTCTATCTCAAGCAG | 59.829 | 40.741 | 0.00 | 0.00 | 35.92 | 4.24 |
1647 | 1771 | 6.489361 | CCTTATTTCTATCTCAAGCAGCCATT | 59.511 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
1712 | 1837 | 1.880027 | GGAATGGTTCAACTCGCTGTT | 59.120 | 47.619 | 0.00 | 0.00 | 39.92 | 3.16 |
1836 | 1978 | 3.181475 | ACAATATGTCCTGGCTCGTACAG | 60.181 | 47.826 | 0.00 | 0.00 | 35.74 | 2.74 |
1844 | 1986 | 0.242825 | TGGCTCGTACAGTTCGAAGG | 59.757 | 55.000 | 0.00 | 0.00 | 36.89 | 3.46 |
1865 | 2007 | 8.290325 | CGAAGGAAAATAATTATAGCCAACTCC | 58.710 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
1880 | 2022 | 3.565890 | CCAACTCCAGTCTACCCCTTAGA | 60.566 | 52.174 | 0.00 | 0.00 | 34.13 | 2.10 |
1888 | 2030 | 0.469518 | CTACCCCTTAGACCCGGGAG | 60.470 | 65.000 | 32.02 | 14.55 | 43.44 | 4.30 |
1911 | 2053 | 4.344359 | TCACAGTGGTGTTATGCTTGTA | 57.656 | 40.909 | 0.00 | 0.00 | 45.45 | 2.41 |
1985 | 2217 | 9.955208 | TCTATAAATTGCATGCTCTTTTGTATG | 57.045 | 29.630 | 20.33 | 11.15 | 0.00 | 2.39 |
1993 | 2225 | 8.625786 | TGCATGCTCTTTTGTATGATATGTAT | 57.374 | 30.769 | 20.33 | 0.00 | 0.00 | 2.29 |
2152 | 2384 | 3.927142 | CCGACTGTTCAAGTATGGTCTTC | 59.073 | 47.826 | 0.00 | 0.00 | 40.07 | 2.87 |
2153 | 2385 | 4.322049 | CCGACTGTTCAAGTATGGTCTTCT | 60.322 | 45.833 | 0.00 | 0.00 | 40.07 | 2.85 |
2260 | 2492 | 4.820173 | TGGAATTTGCTCATAGAGATGCAG | 59.180 | 41.667 | 0.00 | 0.00 | 33.84 | 4.41 |
2296 | 2528 | 2.956333 | GCCAAAAACTACCAGGAGTTGT | 59.044 | 45.455 | 0.00 | 0.00 | 39.62 | 3.32 |
2315 | 2547 | 4.948341 | TGTTACAAGCACCAACTAGAGA | 57.052 | 40.909 | 0.00 | 0.00 | 0.00 | 3.10 |
2433 | 2665 | 4.142609 | TCTCTGCCATCATTACTTCCAC | 57.857 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
2451 | 2683 | 7.746703 | ACTTCCACCATTTATAAGATACTCCC | 58.253 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
2453 | 2685 | 7.554959 | TCCACCATTTATAAGATACTCCCTC | 57.445 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2454 | 2686 | 6.500751 | TCCACCATTTATAAGATACTCCCTCC | 59.499 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
2455 | 2687 | 6.398918 | CACCATTTATAAGATACTCCCTCCG | 58.601 | 44.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2456 | 2688 | 6.014499 | CACCATTTATAAGATACTCCCTCCGT | 60.014 | 42.308 | 0.00 | 0.00 | 0.00 | 4.69 |
2457 | 2689 | 7.177921 | CACCATTTATAAGATACTCCCTCCGTA | 59.822 | 40.741 | 0.00 | 0.00 | 0.00 | 4.02 |
2458 | 2690 | 7.731688 | ACCATTTATAAGATACTCCCTCCGTAA | 59.268 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
2459 | 2691 | 8.591072 | CCATTTATAAGATACTCCCTCCGTAAA | 58.409 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
2460 | 2692 | 9.420551 | CATTTATAAGATACTCCCTCCGTAAAC | 57.579 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
2461 | 2693 | 8.537728 | TTTATAAGATACTCCCTCCGTAAACA | 57.462 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
2462 | 2694 | 8.537728 | TTATAAGATACTCCCTCCGTAAACAA | 57.462 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
2463 | 2695 | 5.750352 | AAGATACTCCCTCCGTAAACAAA | 57.250 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
2464 | 2696 | 5.952347 | AGATACTCCCTCCGTAAACAAAT | 57.048 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
2465 | 2697 | 7.427989 | AAGATACTCCCTCCGTAAACAAATA | 57.572 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2466 | 2698 | 7.613551 | AGATACTCCCTCCGTAAACAAATAT | 57.386 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2467 | 2699 | 8.716674 | AGATACTCCCTCCGTAAACAAATATA | 57.283 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
2468 | 2700 | 8.804204 | AGATACTCCCTCCGTAAACAAATATAG | 58.196 | 37.037 | 0.00 | 0.00 | 0.00 | 1.31 |
2469 | 2701 | 6.170846 | ACTCCCTCCGTAAACAAATATAGG | 57.829 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
2470 | 2702 | 5.901276 | ACTCCCTCCGTAAACAAATATAGGA | 59.099 | 40.000 | 0.00 | 0.00 | 0.00 | 2.94 |
2471 | 2703 | 6.041751 | ACTCCCTCCGTAAACAAATATAGGAG | 59.958 | 42.308 | 0.00 | 0.00 | 42.36 | 3.69 |
2472 | 2704 | 4.995487 | CCCTCCGTAAACAAATATAGGAGC | 59.005 | 45.833 | 3.27 | 0.00 | 41.62 | 4.70 |
2473 | 2705 | 4.684703 | CCTCCGTAAACAAATATAGGAGCG | 59.315 | 45.833 | 3.27 | 0.00 | 41.62 | 5.03 |
2474 | 2706 | 5.266733 | TCCGTAAACAAATATAGGAGCGT | 57.733 | 39.130 | 0.00 | 0.00 | 0.00 | 5.07 |
2475 | 2707 | 5.663456 | TCCGTAAACAAATATAGGAGCGTT | 58.337 | 37.500 | 0.00 | 0.00 | 0.00 | 4.84 |
2476 | 2708 | 6.108015 | TCCGTAAACAAATATAGGAGCGTTT | 58.892 | 36.000 | 0.00 | 0.00 | 0.00 | 3.60 |
2477 | 2709 | 7.264221 | TCCGTAAACAAATATAGGAGCGTTTA | 58.736 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
2478 | 2710 | 7.436080 | TCCGTAAACAAATATAGGAGCGTTTAG | 59.564 | 37.037 | 0.00 | 0.00 | 31.53 | 1.85 |
2479 | 2711 | 7.436080 | CCGTAAACAAATATAGGAGCGTTTAGA | 59.564 | 37.037 | 0.00 | 0.00 | 31.53 | 2.10 |
2480 | 2712 | 8.975439 | CGTAAACAAATATAGGAGCGTTTAGAT | 58.025 | 33.333 | 0.00 | 0.00 | 31.53 | 1.98 |
2482 | 2714 | 8.958119 | AAACAAATATAGGAGCGTTTAGATCA | 57.042 | 30.769 | 0.00 | 0.00 | 36.90 | 2.92 |
2483 | 2715 | 7.948278 | ACAAATATAGGAGCGTTTAGATCAC | 57.052 | 36.000 | 0.00 | 0.00 | 36.90 | 3.06 |
2484 | 2716 | 7.727181 | ACAAATATAGGAGCGTTTAGATCACT | 58.273 | 34.615 | 0.00 | 0.00 | 36.90 | 3.41 |
2485 | 2717 | 8.857098 | ACAAATATAGGAGCGTTTAGATCACTA | 58.143 | 33.333 | 0.00 | 0.00 | 36.90 | 2.74 |
2486 | 2718 | 9.692749 | CAAATATAGGAGCGTTTAGATCACTAA | 57.307 | 33.333 | 0.00 | 0.00 | 36.90 | 2.24 |
2549 | 2781 | 3.365472 | TCATCTCGATCAGAGGTTCCAA | 58.635 | 45.455 | 12.54 | 0.00 | 46.82 | 3.53 |
2621 | 2853 | 4.656112 | AGAGCTGCACCATATTACCTACTT | 59.344 | 41.667 | 1.02 | 0.00 | 0.00 | 2.24 |
2895 | 3131 | 4.373156 | TCACTCGGAGATCAGATATCCA | 57.627 | 45.455 | 21.64 | 9.63 | 40.68 | 3.41 |
3112 | 3354 | 3.358111 | TGAGAAGTTGGTGACCACAAA | 57.642 | 42.857 | 2.46 | 0.00 | 30.78 | 2.83 |
3247 | 3605 | 3.526430 | CCGCTCTGTAGGCTAGCA | 58.474 | 61.111 | 18.24 | 0.00 | 35.98 | 3.49 |
3325 | 3683 | 7.121168 | TGCCTCATGGTTGTTCTTCTAAATAAG | 59.879 | 37.037 | 0.00 | 0.00 | 35.27 | 1.73 |
3333 | 3691 | 9.914131 | GGTTGTTCTTCTAAATAAGAAAATGCT | 57.086 | 29.630 | 0.89 | 0.00 | 44.75 | 3.79 |
3359 | 3717 | 1.484653 | TGCTAGTGCATACCGGTCAAT | 59.515 | 47.619 | 12.40 | 4.91 | 45.31 | 2.57 |
3429 | 3787 | 3.436700 | GTGAAACTGTGGAACCTTTGG | 57.563 | 47.619 | 0.00 | 0.00 | 34.36 | 3.28 |
3821 | 4184 | 8.848474 | TGTTCCAAACTTGTTATTTTCCAAAA | 57.152 | 26.923 | 0.00 | 0.00 | 0.00 | 2.44 |
3903 | 4266 | 7.846066 | AGTAGACATCAATTCAGTTCTTAGCT | 58.154 | 34.615 | 0.00 | 0.00 | 0.00 | 3.32 |
4175 | 4541 | 6.633856 | AGAACTCAGTTGCATTTTCAGTTTT | 58.366 | 32.000 | 0.00 | 0.00 | 0.00 | 2.43 |
4193 | 4559 | 5.639082 | CAGTTTTGTGGTTGCTTTTTCTTCT | 59.361 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
4211 | 4577 | 3.682592 | TCTAGTAGGCAAGCCCTTAGA | 57.317 | 47.619 | 7.62 | 9.62 | 43.06 | 2.10 |
4241 | 4781 | 6.150976 | TGAATCACAAACAGACTCAGTTTTGT | 59.849 | 34.615 | 0.93 | 0.93 | 37.10 | 2.83 |
4369 | 4909 | 5.130975 | TGGTGGTAGATGCTGTCAATAGATT | 59.869 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
4370 | 4910 | 5.698545 | GGTGGTAGATGCTGTCAATAGATTC | 59.301 | 44.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4462 | 5003 | 1.717645 | GTTGTCGCGTTCTCGTTGTAT | 59.282 | 47.619 | 5.77 | 0.00 | 39.49 | 2.29 |
4632 | 5288 | 0.388659 | TGCGCAAATTGCTTTGTCCT | 59.611 | 45.000 | 16.42 | 0.00 | 43.07 | 3.85 |
4635 | 5291 | 1.269726 | CGCAAATTGCTTTGTCCTGGT | 60.270 | 47.619 | 16.42 | 0.00 | 43.07 | 4.00 |
4685 | 5341 | 7.649705 | TCTTGATTCTTGATGTTAGCGACTATC | 59.350 | 37.037 | 0.00 | 0.00 | 0.00 | 2.08 |
4812 | 5468 | 1.064906 | ACACTCCTGGATGATGCAAGG | 60.065 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
4814 | 5470 | 0.822532 | CTCCTGGATGATGCAAGGCC | 60.823 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
4831 | 5487 | 2.036256 | CAAGGGCCAGGGGAAGTG | 59.964 | 66.667 | 6.18 | 0.00 | 0.00 | 3.16 |
4843 | 5499 | 0.106967 | GGGAAGTGAAGAGGCCATCC | 60.107 | 60.000 | 5.01 | 0.00 | 0.00 | 3.51 |
4846 | 5502 | 2.637947 | GAAGTGAAGAGGCCATCCTTC | 58.362 | 52.381 | 19.50 | 19.50 | 44.46 | 3.46 |
4854 | 5510 | 2.272146 | GCCATCCTTCCCTTCGCA | 59.728 | 61.111 | 0.00 | 0.00 | 0.00 | 5.10 |
4921 | 5596 | 5.278266 | CGTTAGTTTTTCAGGATTCAGCCAA | 60.278 | 40.000 | 0.00 | 0.00 | 0.00 | 4.52 |
4961 | 5636 | 6.064060 | CAGGGGCTATAGATCAATGTTTTCA | 58.936 | 40.000 | 3.21 | 0.00 | 0.00 | 2.69 |
4966 | 5641 | 6.442112 | GCTATAGATCAATGTTTTCAAGCCC | 58.558 | 40.000 | 3.21 | 0.00 | 0.00 | 5.19 |
5011 | 5686 | 6.917533 | AGAAATTGGAAGCATTACTTGACTG | 58.082 | 36.000 | 0.00 | 0.00 | 39.29 | 3.51 |
5051 | 5726 | 6.636447 | CGCAAATTGATATCGGATTTTTGCTA | 59.364 | 34.615 | 23.20 | 0.00 | 43.06 | 3.49 |
5055 | 5730 | 3.745975 | TGATATCGGATTTTTGCTAGGCG | 59.254 | 43.478 | 0.00 | 0.00 | 0.00 | 5.52 |
5076 | 5751 | 3.745975 | CGTCTTTGTTCCACTTATGCTGA | 59.254 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
5146 | 5821 | 3.366396 | TGGGTTCAAGTAAGTGCCAAAA | 58.634 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
5175 | 5850 | 4.654262 | GGAAAGTATCAGGTACTCCCATCA | 59.346 | 45.833 | 0.00 | 0.00 | 42.83 | 3.07 |
5199 | 5874 | 0.391263 | GGTACTCCCGGTGCTTCAAG | 60.391 | 60.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5203 | 5878 | 1.418637 | ACTCCCGGTGCTTCAAGTTTA | 59.581 | 47.619 | 0.00 | 0.00 | 0.00 | 2.01 |
5268 | 5944 | 5.895636 | TGAATGTTCGCAAGGAATGTAAT | 57.104 | 34.783 | 0.00 | 0.00 | 36.92 | 1.89 |
5275 | 5951 | 6.205853 | TGTTCGCAAGGAATGTAATTACAACT | 59.794 | 34.615 | 21.57 | 16.27 | 40.60 | 3.16 |
5276 | 5952 | 6.811253 | TCGCAAGGAATGTAATTACAACTT | 57.189 | 33.333 | 21.57 | 20.30 | 40.60 | 2.66 |
5334 | 8316 | 8.918658 | CATAAGAAACAAACATGTGAAATCTGG | 58.081 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
10 | 11 | 2.802667 | CTTTCGCATCCGTCCGCAG | 61.803 | 63.158 | 0.00 | 0.00 | 35.54 | 5.18 |
11 | 12 | 2.813474 | CTTTCGCATCCGTCCGCA | 60.813 | 61.111 | 0.00 | 0.00 | 35.54 | 5.69 |
12 | 13 | 3.564027 | CCTTTCGCATCCGTCCGC | 61.564 | 66.667 | 0.00 | 0.00 | 35.54 | 5.54 |
13 | 14 | 0.031585 | TATCCTTTCGCATCCGTCCG | 59.968 | 55.000 | 0.00 | 0.00 | 35.54 | 4.79 |
14 | 15 | 2.457366 | ATATCCTTTCGCATCCGTCC | 57.543 | 50.000 | 0.00 | 0.00 | 35.54 | 4.79 |
15 | 16 | 3.560068 | ACAAATATCCTTTCGCATCCGTC | 59.440 | 43.478 | 0.00 | 0.00 | 35.54 | 4.79 |
16 | 17 | 3.312421 | CACAAATATCCTTTCGCATCCGT | 59.688 | 43.478 | 0.00 | 0.00 | 35.54 | 4.69 |
17 | 18 | 3.559655 | TCACAAATATCCTTTCGCATCCG | 59.440 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
18 | 19 | 4.576463 | ACTCACAAATATCCTTTCGCATCC | 59.424 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
19 | 20 | 5.741388 | ACTCACAAATATCCTTTCGCATC | 57.259 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
20 | 21 | 5.415701 | ACAACTCACAAATATCCTTTCGCAT | 59.584 | 36.000 | 0.00 | 0.00 | 0.00 | 4.73 |
21 | 22 | 4.759693 | ACAACTCACAAATATCCTTTCGCA | 59.240 | 37.500 | 0.00 | 0.00 | 0.00 | 5.10 |
22 | 23 | 5.296813 | ACAACTCACAAATATCCTTTCGC | 57.703 | 39.130 | 0.00 | 0.00 | 0.00 | 4.70 |
23 | 24 | 5.120208 | ACGACAACTCACAAATATCCTTTCG | 59.880 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
24 | 25 | 6.481954 | ACGACAACTCACAAATATCCTTTC | 57.518 | 37.500 | 0.00 | 0.00 | 0.00 | 2.62 |
25 | 26 | 6.293955 | CCAACGACAACTCACAAATATCCTTT | 60.294 | 38.462 | 0.00 | 0.00 | 0.00 | 3.11 |
26 | 27 | 5.181245 | CCAACGACAACTCACAAATATCCTT | 59.819 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
27 | 28 | 4.695455 | CCAACGACAACTCACAAATATCCT | 59.305 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
28 | 29 | 4.693566 | TCCAACGACAACTCACAAATATCC | 59.306 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
29 | 30 | 5.637810 | TCTCCAACGACAACTCACAAATATC | 59.362 | 40.000 | 0.00 | 0.00 | 0.00 | 1.63 |
30 | 31 | 5.547465 | TCTCCAACGACAACTCACAAATAT | 58.453 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
31 | 32 | 4.951254 | TCTCCAACGACAACTCACAAATA | 58.049 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
32 | 33 | 3.804036 | TCTCCAACGACAACTCACAAAT | 58.196 | 40.909 | 0.00 | 0.00 | 0.00 | 2.32 |
33 | 34 | 3.254470 | TCTCCAACGACAACTCACAAA | 57.746 | 42.857 | 0.00 | 0.00 | 0.00 | 2.83 |
34 | 35 | 2.971660 | TCTCCAACGACAACTCACAA | 57.028 | 45.000 | 0.00 | 0.00 | 0.00 | 3.33 |
35 | 36 | 2.754472 | CATCTCCAACGACAACTCACA | 58.246 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
36 | 37 | 1.461127 | GCATCTCCAACGACAACTCAC | 59.539 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
37 | 38 | 1.608025 | GGCATCTCCAACGACAACTCA | 60.608 | 52.381 | 0.00 | 0.00 | 34.01 | 3.41 |
38 | 39 | 1.079503 | GGCATCTCCAACGACAACTC | 58.920 | 55.000 | 0.00 | 0.00 | 34.01 | 3.01 |
39 | 40 | 0.687354 | AGGCATCTCCAACGACAACT | 59.313 | 50.000 | 0.00 | 0.00 | 37.29 | 3.16 |
40 | 41 | 1.523758 | AAGGCATCTCCAACGACAAC | 58.476 | 50.000 | 0.00 | 0.00 | 37.29 | 3.32 |
41 | 42 | 3.055458 | TCATAAGGCATCTCCAACGACAA | 60.055 | 43.478 | 0.00 | 0.00 | 37.29 | 3.18 |
42 | 43 | 2.499693 | TCATAAGGCATCTCCAACGACA | 59.500 | 45.455 | 0.00 | 0.00 | 37.29 | 4.35 |
43 | 44 | 3.179443 | TCATAAGGCATCTCCAACGAC | 57.821 | 47.619 | 0.00 | 0.00 | 37.29 | 4.34 |
44 | 45 | 5.304357 | TCTTATCATAAGGCATCTCCAACGA | 59.696 | 40.000 | 4.51 | 0.00 | 37.29 | 3.85 |
45 | 46 | 5.541845 | TCTTATCATAAGGCATCTCCAACG | 58.458 | 41.667 | 4.51 | 0.00 | 37.29 | 4.10 |
60 | 61 | 9.624373 | GCTGACAATGGGATTATATCTTATCAT | 57.376 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
61 | 62 | 7.765819 | CGCTGACAATGGGATTATATCTTATCA | 59.234 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
62 | 63 | 7.766278 | ACGCTGACAATGGGATTATATCTTATC | 59.234 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
63 | 64 | 7.550551 | CACGCTGACAATGGGATTATATCTTAT | 59.449 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
64 | 65 | 6.873605 | CACGCTGACAATGGGATTATATCTTA | 59.126 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
65 | 66 | 5.702670 | CACGCTGACAATGGGATTATATCTT | 59.297 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
66 | 67 | 5.012046 | TCACGCTGACAATGGGATTATATCT | 59.988 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
67 | 68 | 5.237815 | TCACGCTGACAATGGGATTATATC | 58.762 | 41.667 | 0.00 | 0.00 | 0.00 | 1.63 |
68 | 69 | 5.227569 | TCACGCTGACAATGGGATTATAT | 57.772 | 39.130 | 0.00 | 0.00 | 0.00 | 0.86 |
69 | 70 | 4.681074 | TCACGCTGACAATGGGATTATA | 57.319 | 40.909 | 0.00 | 0.00 | 0.00 | 0.98 |
70 | 71 | 3.558931 | TCACGCTGACAATGGGATTAT | 57.441 | 42.857 | 0.00 | 0.00 | 0.00 | 1.28 |
71 | 72 | 3.006940 | GTTCACGCTGACAATGGGATTA | 58.993 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
72 | 73 | 1.812571 | GTTCACGCTGACAATGGGATT | 59.187 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
73 | 74 | 1.271325 | TGTTCACGCTGACAATGGGAT | 60.271 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
74 | 75 | 0.107643 | TGTTCACGCTGACAATGGGA | 59.892 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
75 | 76 | 0.950836 | TTGTTCACGCTGACAATGGG | 59.049 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
76 | 77 | 2.772568 | TTTGTTCACGCTGACAATGG | 57.227 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
77 | 78 | 3.061928 | CGTTTTTGTTCACGCTGACAATG | 60.062 | 43.478 | 0.00 | 0.00 | 0.00 | 2.82 |
78 | 79 | 3.105203 | CGTTTTTGTTCACGCTGACAAT | 58.895 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
79 | 80 | 2.510874 | CGTTTTTGTTCACGCTGACAA | 58.489 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
80 | 81 | 2.166741 | CGTTTTTGTTCACGCTGACA | 57.833 | 45.000 | 0.00 | 0.00 | 0.00 | 3.58 |
86 | 87 | 1.583967 | TGGCGCGTTTTTGTTCACG | 60.584 | 52.632 | 8.43 | 0.00 | 39.49 | 4.35 |
87 | 88 | 1.793480 | CGTGGCGCGTTTTTGTTCAC | 61.793 | 55.000 | 13.13 | 0.00 | 35.54 | 3.18 |
88 | 89 | 1.583967 | CGTGGCGCGTTTTTGTTCA | 60.584 | 52.632 | 13.13 | 0.00 | 35.54 | 3.18 |
89 | 90 | 1.259544 | CTCGTGGCGCGTTTTTGTTC | 61.260 | 55.000 | 20.88 | 0.00 | 42.13 | 3.18 |
90 | 91 | 1.298041 | CTCGTGGCGCGTTTTTGTT | 60.298 | 52.632 | 20.88 | 0.00 | 42.13 | 2.83 |
91 | 92 | 2.174969 | TCTCGTGGCGCGTTTTTGT | 61.175 | 52.632 | 20.88 | 0.00 | 42.13 | 2.83 |
92 | 93 | 1.721133 | GTCTCGTGGCGCGTTTTTG | 60.721 | 57.895 | 20.88 | 7.02 | 42.13 | 2.44 |
93 | 94 | 1.707239 | TTGTCTCGTGGCGCGTTTTT | 61.707 | 50.000 | 20.88 | 0.00 | 42.13 | 1.94 |
94 | 95 | 1.707239 | TTTGTCTCGTGGCGCGTTTT | 61.707 | 50.000 | 20.88 | 0.00 | 42.13 | 2.43 |
95 | 96 | 1.707239 | TTTTGTCTCGTGGCGCGTTT | 61.707 | 50.000 | 20.88 | 0.00 | 42.13 | 3.60 |
96 | 97 | 2.101209 | CTTTTGTCTCGTGGCGCGTT | 62.101 | 55.000 | 20.88 | 0.00 | 42.13 | 4.84 |
97 | 98 | 2.586635 | TTTTGTCTCGTGGCGCGT | 60.587 | 55.556 | 20.88 | 0.00 | 42.13 | 6.01 |
98 | 99 | 1.827315 | TTCTTTTGTCTCGTGGCGCG | 61.827 | 55.000 | 15.42 | 15.42 | 43.01 | 6.86 |
99 | 100 | 0.110644 | CTTCTTTTGTCTCGTGGCGC | 60.111 | 55.000 | 0.00 | 0.00 | 0.00 | 6.53 |
100 | 101 | 1.192534 | GACTTCTTTTGTCTCGTGGCG | 59.807 | 52.381 | 0.00 | 0.00 | 0.00 | 5.69 |
101 | 102 | 2.484889 | AGACTTCTTTTGTCTCGTGGC | 58.515 | 47.619 | 0.00 | 0.00 | 40.35 | 5.01 |
102 | 103 | 3.495001 | GGAAGACTTCTTTTGTCTCGTGG | 59.505 | 47.826 | 14.72 | 0.00 | 43.16 | 4.94 |
103 | 104 | 4.119862 | TGGAAGACTTCTTTTGTCTCGTG | 58.880 | 43.478 | 14.72 | 0.00 | 43.16 | 4.35 |
104 | 105 | 4.372656 | CTGGAAGACTTCTTTTGTCTCGT | 58.627 | 43.478 | 14.72 | 0.00 | 43.16 | 4.18 |
105 | 106 | 3.185391 | GCTGGAAGACTTCTTTTGTCTCG | 59.815 | 47.826 | 14.72 | 0.00 | 43.16 | 4.04 |
106 | 107 | 3.185391 | CGCTGGAAGACTTCTTTTGTCTC | 59.815 | 47.826 | 14.72 | 0.00 | 43.16 | 3.36 |
107 | 108 | 3.134458 | CGCTGGAAGACTTCTTTTGTCT | 58.866 | 45.455 | 14.72 | 0.00 | 45.55 | 3.41 |
108 | 109 | 3.131396 | TCGCTGGAAGACTTCTTTTGTC | 58.869 | 45.455 | 14.72 | 0.00 | 36.11 | 3.18 |
109 | 110 | 3.134458 | CTCGCTGGAAGACTTCTTTTGT | 58.866 | 45.455 | 14.72 | 0.00 | 36.11 | 2.83 |
110 | 111 | 3.059325 | CACTCGCTGGAAGACTTCTTTTG | 60.059 | 47.826 | 14.72 | 3.91 | 36.11 | 2.44 |
111 | 112 | 3.134458 | CACTCGCTGGAAGACTTCTTTT | 58.866 | 45.455 | 14.72 | 0.00 | 36.11 | 2.27 |
112 | 113 | 2.760374 | CACTCGCTGGAAGACTTCTTT | 58.240 | 47.619 | 14.72 | 0.00 | 36.11 | 2.52 |
113 | 114 | 1.606737 | GCACTCGCTGGAAGACTTCTT | 60.607 | 52.381 | 14.72 | 0.00 | 34.07 | 2.52 |
114 | 115 | 0.037790 | GCACTCGCTGGAAGACTTCT | 60.038 | 55.000 | 14.72 | 0.00 | 34.07 | 2.85 |
115 | 116 | 1.016653 | GGCACTCGCTGGAAGACTTC | 61.017 | 60.000 | 6.66 | 6.66 | 38.60 | 3.01 |
116 | 117 | 1.004440 | GGCACTCGCTGGAAGACTT | 60.004 | 57.895 | 0.00 | 0.00 | 38.60 | 3.01 |
117 | 118 | 2.659610 | GGCACTCGCTGGAAGACT | 59.340 | 61.111 | 0.00 | 0.00 | 38.60 | 3.24 |
118 | 119 | 2.811317 | CGGCACTCGCTGGAAGAC | 60.811 | 66.667 | 0.00 | 0.00 | 41.16 | 3.01 |
125 | 126 | 3.036084 | CACGAAACGGCACTCGCT | 61.036 | 61.111 | 0.00 | 0.00 | 43.89 | 4.93 |
126 | 127 | 4.719616 | GCACGAAACGGCACTCGC | 62.720 | 66.667 | 0.00 | 0.00 | 43.89 | 5.03 |
127 | 128 | 3.334751 | TGCACGAAACGGCACTCG | 61.335 | 61.111 | 0.00 | 0.00 | 45.88 | 4.18 |
131 | 132 | 2.818487 | CTGTGTGCACGAAACGGCA | 61.818 | 57.895 | 13.13 | 0.00 | 37.77 | 5.69 |
132 | 133 | 2.052237 | CTGTGTGCACGAAACGGC | 60.052 | 61.111 | 13.13 | 0.00 | 0.00 | 5.68 |
133 | 134 | 0.931702 | TAACTGTGTGCACGAAACGG | 59.068 | 50.000 | 13.13 | 12.42 | 0.00 | 4.44 |
134 | 135 | 1.325037 | TGTAACTGTGTGCACGAAACG | 59.675 | 47.619 | 13.13 | 4.52 | 0.00 | 3.60 |
135 | 136 | 2.700694 | GTGTAACTGTGTGCACGAAAC | 58.299 | 47.619 | 13.13 | 5.55 | 0.00 | 2.78 |
140 | 141 | 2.286184 | CCTTTCGTGTAACTGTGTGCAC | 60.286 | 50.000 | 10.75 | 10.75 | 31.75 | 4.57 |
141 | 142 | 1.937223 | CCTTTCGTGTAACTGTGTGCA | 59.063 | 47.619 | 0.00 | 0.00 | 31.75 | 4.57 |
142 | 143 | 1.333791 | GCCTTTCGTGTAACTGTGTGC | 60.334 | 52.381 | 0.00 | 0.00 | 31.75 | 4.57 |
143 | 144 | 1.937223 | TGCCTTTCGTGTAACTGTGTG | 59.063 | 47.619 | 0.00 | 0.00 | 31.75 | 3.82 |
144 | 145 | 1.937899 | GTGCCTTTCGTGTAACTGTGT | 59.062 | 47.619 | 0.00 | 0.00 | 31.75 | 3.72 |
145 | 146 | 2.210116 | AGTGCCTTTCGTGTAACTGTG | 58.790 | 47.619 | 0.00 | 0.00 | 31.75 | 3.66 |
146 | 147 | 2.480845 | GAGTGCCTTTCGTGTAACTGT | 58.519 | 47.619 | 0.00 | 0.00 | 31.75 | 3.55 |
147 | 148 | 1.455786 | CGAGTGCCTTTCGTGTAACTG | 59.544 | 52.381 | 0.00 | 0.00 | 33.57 | 3.16 |
148 | 149 | 1.338973 | TCGAGTGCCTTTCGTGTAACT | 59.661 | 47.619 | 2.28 | 0.00 | 39.05 | 2.24 |
149 | 150 | 1.719780 | CTCGAGTGCCTTTCGTGTAAC | 59.280 | 52.381 | 3.62 | 0.00 | 39.05 | 2.50 |
150 | 151 | 1.610038 | TCTCGAGTGCCTTTCGTGTAA | 59.390 | 47.619 | 13.13 | 0.00 | 39.05 | 2.41 |
151 | 152 | 1.241165 | TCTCGAGTGCCTTTCGTGTA | 58.759 | 50.000 | 13.13 | 0.00 | 39.05 | 2.90 |
152 | 153 | 0.603569 | ATCTCGAGTGCCTTTCGTGT | 59.396 | 50.000 | 13.13 | 0.00 | 39.05 | 4.49 |
153 | 154 | 2.561733 | TATCTCGAGTGCCTTTCGTG | 57.438 | 50.000 | 13.13 | 0.76 | 39.05 | 4.35 |
154 | 155 | 2.230508 | TGTTATCTCGAGTGCCTTTCGT | 59.769 | 45.455 | 13.13 | 0.00 | 39.05 | 3.85 |
155 | 156 | 2.876091 | TGTTATCTCGAGTGCCTTTCG | 58.124 | 47.619 | 13.13 | 0.00 | 39.33 | 3.46 |
156 | 157 | 3.371285 | GGTTGTTATCTCGAGTGCCTTTC | 59.629 | 47.826 | 13.13 | 0.29 | 0.00 | 2.62 |
157 | 158 | 3.335579 | GGTTGTTATCTCGAGTGCCTTT | 58.664 | 45.455 | 13.13 | 0.00 | 0.00 | 3.11 |
158 | 159 | 2.674177 | CGGTTGTTATCTCGAGTGCCTT | 60.674 | 50.000 | 13.13 | 0.00 | 0.00 | 4.35 |
159 | 160 | 1.135083 | CGGTTGTTATCTCGAGTGCCT | 60.135 | 52.381 | 13.13 | 0.00 | 0.00 | 4.75 |
160 | 161 | 1.135199 | TCGGTTGTTATCTCGAGTGCC | 60.135 | 52.381 | 13.13 | 4.74 | 0.00 | 5.01 |
161 | 162 | 2.273370 | TCGGTTGTTATCTCGAGTGC | 57.727 | 50.000 | 13.13 | 2.11 | 0.00 | 4.40 |
162 | 163 | 4.482386 | TCTTTCGGTTGTTATCTCGAGTG | 58.518 | 43.478 | 13.13 | 0.00 | 33.11 | 3.51 |
163 | 164 | 4.778534 | TCTTTCGGTTGTTATCTCGAGT | 57.221 | 40.909 | 13.13 | 2.46 | 33.11 | 4.18 |
164 | 165 | 6.263344 | TGTATCTTTCGGTTGTTATCTCGAG | 58.737 | 40.000 | 5.93 | 5.93 | 33.11 | 4.04 |
165 | 166 | 6.198650 | TGTATCTTTCGGTTGTTATCTCGA | 57.801 | 37.500 | 0.00 | 0.00 | 0.00 | 4.04 |
166 | 167 | 6.530534 | ACTTGTATCTTTCGGTTGTTATCTCG | 59.469 | 38.462 | 0.00 | 0.00 | 0.00 | 4.04 |
197 | 198 | 3.605634 | TGTGGGCATATGATATTACGGC | 58.394 | 45.455 | 6.97 | 0.00 | 0.00 | 5.68 |
215 | 220 | 4.992319 | TGTGTCTAAAACCGTATCCTTGTG | 59.008 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
384 | 396 | 1.945394 | AGACCAGGTATACGTACGCAG | 59.055 | 52.381 | 16.72 | 0.00 | 0.00 | 5.18 |
385 | 397 | 1.672363 | CAGACCAGGTATACGTACGCA | 59.328 | 52.381 | 16.72 | 1.76 | 0.00 | 5.24 |
386 | 398 | 1.002033 | CCAGACCAGGTATACGTACGC | 60.002 | 57.143 | 16.72 | 0.00 | 0.00 | 4.42 |
387 | 399 | 2.289002 | GACCAGACCAGGTATACGTACG | 59.711 | 54.545 | 15.01 | 15.01 | 43.38 | 3.67 |
417 | 434 | 2.237143 | AGGATGTGTGATCGTTGATGGT | 59.763 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
453 | 470 | 1.884926 | GCTGCGGCAGAGATGGTAC | 60.885 | 63.158 | 32.72 | 9.11 | 38.54 | 3.34 |
454 | 471 | 2.358372 | TGCTGCGGCAGAGATGGTA | 61.358 | 57.895 | 32.72 | 2.52 | 44.28 | 3.25 |
455 | 472 | 3.709633 | TGCTGCGGCAGAGATGGT | 61.710 | 61.111 | 32.72 | 0.00 | 44.28 | 3.55 |
524 | 541 | 2.455674 | TGACTTGGAGTGATGAACGG | 57.544 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
526 | 543 | 5.278022 | GGTTTCTTGACTTGGAGTGATGAAC | 60.278 | 44.000 | 0.00 | 0.00 | 28.55 | 3.18 |
588 | 615 | 3.114616 | CTGGCTCGTTGCGGTGAG | 61.115 | 66.667 | 0.00 | 0.00 | 44.05 | 3.51 |
801 | 884 | 0.451783 | GACGGCTGGTTTATGGCAAG | 59.548 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
947 | 1030 | 4.731853 | TGGATGGTCAGGCGGGGA | 62.732 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
1110 | 1202 | 4.394078 | TCGTCGTCGAGGTTGGCG | 62.394 | 66.667 | 14.08 | 4.73 | 41.35 | 5.69 |
1186 | 1294 | 2.170260 | GAGCGAGAGAGCGATCGGAG | 62.170 | 65.000 | 18.30 | 0.00 | 43.00 | 4.63 |
1378 | 1486 | 5.182570 | TGGAGACAATTCAGCAGAATCAAAG | 59.817 | 40.000 | 4.66 | 0.00 | 43.52 | 2.77 |
1479 | 1602 | 8.041143 | ACCTATTAGTGGCATATAAGACCAAA | 57.959 | 34.615 | 0.00 | 0.00 | 34.63 | 3.28 |
1642 | 1766 | 5.406477 | GTCCAAATGACTTTTCTGAAATGGC | 59.594 | 40.000 | 17.12 | 15.34 | 41.03 | 4.40 |
1712 | 1837 | 3.386726 | CGGGAAGGACATACATAAGGACA | 59.613 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
1713 | 1838 | 3.802675 | GCGGGAAGGACATACATAAGGAC | 60.803 | 52.174 | 0.00 | 0.00 | 0.00 | 3.85 |
1714 | 1839 | 2.367567 | GCGGGAAGGACATACATAAGGA | 59.632 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1827 | 1953 | 2.342910 | TTCCTTCGAACTGTACGAGC | 57.657 | 50.000 | 0.00 | 0.00 | 40.72 | 5.03 |
1836 | 1978 | 9.447040 | GTTGGCTATAATTATTTTCCTTCGAAC | 57.553 | 33.333 | 2.68 | 1.02 | 0.00 | 3.95 |
1844 | 1986 | 9.343539 | AGACTGGAGTTGGCTATAATTATTTTC | 57.656 | 33.333 | 2.68 | 0.00 | 0.00 | 2.29 |
1880 | 2022 | 1.990060 | CCACTGTGATCTCCCGGGT | 60.990 | 63.158 | 22.86 | 0.00 | 0.00 | 5.28 |
1885 | 2027 | 2.939103 | GCATAACACCACTGTGATCTCC | 59.061 | 50.000 | 9.86 | 0.00 | 45.76 | 3.71 |
1888 | 2030 | 3.753272 | ACAAGCATAACACCACTGTGATC | 59.247 | 43.478 | 9.86 | 0.00 | 45.76 | 2.92 |
1911 | 2053 | 5.009510 | CAGAGTAGTATACAGAGCTGCATGT | 59.990 | 44.000 | 13.79 | 13.79 | 46.26 | 3.21 |
2152 | 2384 | 3.319137 | TTGTGCTAGTTCCTACTGCAG | 57.681 | 47.619 | 13.48 | 13.48 | 38.32 | 4.41 |
2153 | 2385 | 3.762407 | TTTGTGCTAGTTCCTACTGCA | 57.238 | 42.857 | 0.00 | 0.00 | 36.64 | 4.41 |
2195 | 2427 | 2.831685 | AAGTCTTGCATACACGACCA | 57.168 | 45.000 | 0.00 | 0.00 | 44.08 | 4.02 |
2260 | 2492 | 6.493978 | AGTTTTTGGCACATTAAAACATTGC | 58.506 | 32.000 | 20.99 | 1.52 | 45.86 | 3.56 |
2433 | 2665 | 6.607004 | ACGGAGGGAGTATCTTATAAATGG | 57.393 | 41.667 | 0.00 | 0.00 | 33.73 | 3.16 |
2449 | 2681 | 4.995487 | GCTCCTATATTTGTTTACGGAGGG | 59.005 | 45.833 | 0.00 | 0.00 | 37.59 | 4.30 |
2450 | 2682 | 4.684703 | CGCTCCTATATTTGTTTACGGAGG | 59.315 | 45.833 | 0.00 | 0.00 | 37.59 | 4.30 |
2451 | 2683 | 5.287226 | ACGCTCCTATATTTGTTTACGGAG | 58.713 | 41.667 | 0.00 | 0.00 | 39.55 | 4.63 |
2453 | 2685 | 5.978934 | AACGCTCCTATATTTGTTTACGG | 57.021 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
2454 | 2686 | 8.343974 | TCTAAACGCTCCTATATTTGTTTACG | 57.656 | 34.615 | 0.00 | 0.00 | 32.41 | 3.18 |
2457 | 2689 | 8.827677 | GTGATCTAAACGCTCCTATATTTGTTT | 58.172 | 33.333 | 0.00 | 0.00 | 34.32 | 2.83 |
2458 | 2690 | 8.204836 | AGTGATCTAAACGCTCCTATATTTGTT | 58.795 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2459 | 2691 | 7.727181 | AGTGATCTAAACGCTCCTATATTTGT | 58.273 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
2460 | 2692 | 9.692749 | TTAGTGATCTAAACGCTCCTATATTTG | 57.307 | 33.333 | 0.00 | 0.00 | 33.79 | 2.32 |
2465 | 2697 | 9.614792 | AAATTTTAGTGATCTAAACGCTCCTAT | 57.385 | 29.630 | 0.00 | 0.00 | 43.20 | 2.57 |
2466 | 2698 | 8.879759 | CAAATTTTAGTGATCTAAACGCTCCTA | 58.120 | 33.333 | 0.00 | 0.00 | 43.20 | 2.94 |
2467 | 2699 | 7.148239 | CCAAATTTTAGTGATCTAAACGCTCCT | 60.148 | 37.037 | 0.00 | 0.00 | 43.20 | 3.69 |
2468 | 2700 | 6.967199 | CCAAATTTTAGTGATCTAAACGCTCC | 59.033 | 38.462 | 0.00 | 0.00 | 43.20 | 4.70 |
2469 | 2701 | 6.967199 | CCCAAATTTTAGTGATCTAAACGCTC | 59.033 | 38.462 | 0.00 | 0.00 | 43.20 | 5.03 |
2470 | 2702 | 6.433093 | ACCCAAATTTTAGTGATCTAAACGCT | 59.567 | 34.615 | 0.00 | 0.00 | 43.20 | 5.07 |
2471 | 2703 | 6.526674 | CACCCAAATTTTAGTGATCTAAACGC | 59.473 | 38.462 | 10.54 | 0.00 | 43.20 | 4.84 |
2472 | 2704 | 6.526674 | GCACCCAAATTTTAGTGATCTAAACG | 59.473 | 38.462 | 17.55 | 0.00 | 43.20 | 3.60 |
2473 | 2705 | 7.328493 | GTGCACCCAAATTTTAGTGATCTAAAC | 59.672 | 37.037 | 17.55 | 3.12 | 43.20 | 2.01 |
2474 | 2706 | 7.375053 | GTGCACCCAAATTTTAGTGATCTAAA | 58.625 | 34.615 | 17.55 | 0.00 | 42.24 | 1.85 |
2475 | 2707 | 6.071616 | GGTGCACCCAAATTTTAGTGATCTAA | 60.072 | 38.462 | 26.31 | 0.00 | 34.76 | 2.10 |
2476 | 2708 | 5.417580 | GGTGCACCCAAATTTTAGTGATCTA | 59.582 | 40.000 | 26.31 | 2.47 | 31.79 | 1.98 |
2477 | 2709 | 4.220602 | GGTGCACCCAAATTTTAGTGATCT | 59.779 | 41.667 | 26.31 | 0.00 | 31.79 | 2.75 |
2478 | 2710 | 4.494484 | GGTGCACCCAAATTTTAGTGATC | 58.506 | 43.478 | 26.31 | 10.54 | 31.79 | 2.92 |
2479 | 2711 | 4.535526 | GGTGCACCCAAATTTTAGTGAT | 57.464 | 40.909 | 26.31 | 0.00 | 31.79 | 3.06 |
2549 | 2781 | 7.349859 | TGGAGTGGGGTTATAAACTCATAAGAT | 59.650 | 37.037 | 6.31 | 0.00 | 40.67 | 2.40 |
2748 | 2984 | 5.721232 | AGAACTAGTGATTGTCCTAAACCG | 58.279 | 41.667 | 0.00 | 0.00 | 0.00 | 4.44 |
2886 | 3122 | 6.990908 | TCTATGGCATATCCTGGATATCTG | 57.009 | 41.667 | 23.27 | 16.95 | 33.52 | 2.90 |
2893 | 3129 | 6.966534 | AAAAAGTTCTATGGCATATCCTGG | 57.033 | 37.500 | 7.81 | 0.00 | 35.26 | 4.45 |
2895 | 3131 | 7.816411 | ACCTAAAAAGTTCTATGGCATATCCT | 58.184 | 34.615 | 7.81 | 1.57 | 35.26 | 3.24 |
3325 | 3683 | 3.181506 | GCACTAGCACCTGTAGCATTTTC | 60.182 | 47.826 | 0.00 | 0.00 | 41.58 | 2.29 |
3456 | 3814 | 2.618241 | TCGCCATGACCAAATGATTAGC | 59.382 | 45.455 | 0.00 | 0.00 | 0.00 | 3.09 |
3622 | 3981 | 6.371825 | TCTCTTCGCGACATCATATACTATGT | 59.628 | 38.462 | 9.15 | 2.23 | 39.00 | 2.29 |
3635 | 3994 | 0.675208 | AGCTCTCTCTCTTCGCGACA | 60.675 | 55.000 | 9.15 | 0.00 | 0.00 | 4.35 |
3763 | 4122 | 9.243637 | TCAGGAAAAATAACAATTTCTGTTTCG | 57.756 | 29.630 | 0.00 | 0.00 | 46.49 | 3.46 |
3821 | 4184 | 9.869757 | AAAGTTGTGTAGAAAAAGCAATTTAGT | 57.130 | 25.926 | 0.00 | 0.00 | 0.00 | 2.24 |
3928 | 4292 | 4.081752 | GTGACTGTTCTCTCATCATCCTGT | 60.082 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
3973 | 4337 | 3.244665 | ACAGACATCCAGATTCTTGTGCA | 60.245 | 43.478 | 0.00 | 0.00 | 0.00 | 4.57 |
4117 | 4482 | 6.686126 | GCCCCATGTGTTTGCATCTTAATAAT | 60.686 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
4118 | 4483 | 5.395103 | GCCCCATGTGTTTGCATCTTAATAA | 60.395 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4119 | 4484 | 4.099266 | GCCCCATGTGTTTGCATCTTAATA | 59.901 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
4175 | 4541 | 5.763204 | CCTACTAGAAGAAAAAGCAACCACA | 59.237 | 40.000 | 0.00 | 0.00 | 0.00 | 4.17 |
4193 | 4559 | 4.811498 | TGTATCTAAGGGCTTGCCTACTA | 58.189 | 43.478 | 11.71 | 0.54 | 0.00 | 1.82 |
4207 | 4573 | 9.371136 | GAGTCTGTTTGTGATTCATGTATCTAA | 57.629 | 33.333 | 12.82 | 6.28 | 0.00 | 2.10 |
4211 | 4577 | 7.164122 | ACTGAGTCTGTTTGTGATTCATGTAT | 58.836 | 34.615 | 0.00 | 0.00 | 31.52 | 2.29 |
4241 | 4781 | 1.215382 | CAAGGATCTGCACGACGGA | 59.785 | 57.895 | 0.00 | 0.00 | 38.30 | 4.69 |
4369 | 4909 | 2.541794 | GCGAGCTCAATCATACTCACGA | 60.542 | 50.000 | 15.40 | 0.00 | 0.00 | 4.35 |
4370 | 4910 | 1.783711 | GCGAGCTCAATCATACTCACG | 59.216 | 52.381 | 15.40 | 0.00 | 0.00 | 4.35 |
4489 | 5030 | 4.164204 | CCCAATTTCCCCACCTTTTCTAA | 58.836 | 43.478 | 0.00 | 0.00 | 0.00 | 2.10 |
4632 | 5288 | 1.902508 | GGAAGGTCTGTCTCATCACCA | 59.097 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
4635 | 5291 | 2.630889 | AGGGAAGGTCTGTCTCATCA | 57.369 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
4685 | 5341 | 2.741985 | TTCAGTGCCGTCCATGCG | 60.742 | 61.111 | 0.00 | 0.00 | 0.00 | 4.73 |
4814 | 5470 | 2.036256 | CACTTCCCCTGGCCCTTG | 59.964 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
4831 | 5487 | 0.922626 | AAGGGAAGGATGGCCTCTTC | 59.077 | 55.000 | 19.05 | 19.05 | 46.28 | 2.87 |
4843 | 5499 | 1.885887 | TGGAAAATGTGCGAAGGGAAG | 59.114 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
4846 | 5502 | 1.533625 | TCTGGAAAATGTGCGAAGGG | 58.466 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
4854 | 5510 | 3.509442 | TGCTGGGAAATCTGGAAAATGT | 58.491 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
4921 | 5596 | 3.249189 | TGGGCTCTTCGGCACCTT | 61.249 | 61.111 | 0.00 | 0.00 | 40.61 | 3.50 |
4943 | 5618 | 6.293626 | CCGGGCTTGAAAACATTGATCTATAG | 60.294 | 42.308 | 0.00 | 0.00 | 0.00 | 1.31 |
4961 | 5636 | 0.250338 | GTCAAGTGAACTCCGGGCTT | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
5011 | 5686 | 1.886886 | TTGCGGTTAGGGTTCAGTTC | 58.113 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
5051 | 5726 | 2.922740 | TAAGTGGAACAAAGACGCCT | 57.077 | 45.000 | 0.00 | 0.00 | 44.16 | 5.52 |
5055 | 5730 | 5.182001 | ACATCAGCATAAGTGGAACAAAGAC | 59.818 | 40.000 | 0.00 | 0.00 | 44.16 | 3.01 |
5146 | 5821 | 4.040755 | AGTACCTGATACTTTCCCATGCT | 58.959 | 43.478 | 0.00 | 0.00 | 41.71 | 3.79 |
5268 | 5944 | 9.191479 | TGGACCTGAAATTTTTAGAAGTTGTAA | 57.809 | 29.630 | 2.68 | 0.00 | 0.00 | 2.41 |
5275 | 5951 | 8.754080 | TCAAGTTTGGACCTGAAATTTTTAGAA | 58.246 | 29.630 | 2.68 | 0.00 | 0.00 | 2.10 |
5276 | 5952 | 8.299990 | TCAAGTTTGGACCTGAAATTTTTAGA | 57.700 | 30.769 | 2.68 | 0.00 | 0.00 | 2.10 |
5321 | 8303 | 6.183360 | ACACTATTCATGCCAGATTTCACATG | 60.183 | 38.462 | 0.00 | 0.00 | 40.97 | 3.21 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.