Multiple sequence alignment - TraesCS1D01G140600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G140600 chr1D 100.000 9833 0 0 1 9833 193499510 193509342 0.000000e+00 18159.0
1 TraesCS1D01G140600 chr1D 94.872 39 2 0 8405 8443 193507830 193507868 2.970000e-05 62.1
2 TraesCS1D01G140600 chr1D 94.872 39 2 0 8321 8359 193507914 193507952 2.970000e-05 62.1
3 TraesCS1D01G140600 chr1B 94.904 3552 119 22 788 4304 268395906 268399430 0.000000e+00 5500.0
4 TraesCS1D01G140600 chr1B 96.151 2910 76 14 4609 7490 268399748 268402649 0.000000e+00 4721.0
5 TraesCS1D01G140600 chr1B 94.057 1750 54 17 8027 9747 268403575 268405303 0.000000e+00 2610.0
6 TraesCS1D01G140600 chr1B 93.394 545 20 7 7500 8040 268402862 268403394 0.000000e+00 793.0
7 TraesCS1D01G140600 chr1B 87.229 462 38 6 1 445 268394152 268394609 3.170000e-139 507.0
8 TraesCS1D01G140600 chr1B 91.053 190 15 2 602 790 268394616 268394804 1.270000e-63 255.0
9 TraesCS1D01G140600 chr1B 94.326 141 6 1 4305 4443 268399552 268399692 2.150000e-51 215.0
10 TraesCS1D01G140600 chr1B 100.000 73 0 0 9761 9833 268405627 268405699 1.720000e-27 135.0
11 TraesCS1D01G140600 chr1B 94.872 39 2 0 8321 8359 268403951 268403989 2.970000e-05 62.1
12 TraesCS1D01G140600 chr1A 94.667 3488 129 25 853 4304 240306065 240309531 0.000000e+00 5358.0
13 TraesCS1D01G140600 chr1A 94.383 1887 73 12 6813 8673 240311969 240313848 0.000000e+00 2867.0
14 TraesCS1D01G140600 chr1A 96.140 1632 51 7 4609 6232 240309865 240311492 0.000000e+00 2654.0
15 TraesCS1D01G140600 chr1A 90.859 1083 34 22 8674 9747 240313881 240314907 0.000000e+00 1391.0
16 TraesCS1D01G140600 chr1A 97.737 486 10 1 6385 6870 240311497 240311981 0.000000e+00 835.0
17 TraesCS1D01G140600 chr1A 88.616 448 38 8 1 445 240305283 240305720 5.230000e-147 532.0
18 TraesCS1D01G140600 chr1A 95.633 229 7 3 4305 4532 240309653 240309879 2.020000e-96 364.0
19 TraesCS1D01G140600 chr1A 89.305 187 18 2 605 790 240305730 240305915 5.940000e-57 233.0
20 TraesCS1D01G140600 chr1A 86.885 183 23 1 9241 9422 240555846 240556028 4.660000e-48 204.0
21 TraesCS1D01G140600 chr1A 97.727 88 2 0 9746 9833 240314948 240315035 1.710000e-32 152.0
22 TraesCS1D01G140600 chr1A 85.714 63 9 0 9747 9809 240558424 240558486 6.370000e-07 67.6
23 TraesCS1D01G140600 chr1A 94.872 39 2 0 8321 8359 240313581 240313619 2.970000e-05 62.1
24 TraesCS1D01G140600 chr3B 78.337 457 75 6 4 443 706695178 706695627 3.500000e-69 274.0
25 TraesCS1D01G140600 chr3B 94.545 165 9 0 3081 3245 177086526 177086362 1.270000e-63 255.0
26 TraesCS1D01G140600 chr3B 93.333 165 11 0 445 609 503028652 503028488 2.740000e-60 244.0
27 TraesCS1D01G140600 chr3B 93.333 165 7 3 445 605 749075744 749075908 3.550000e-59 241.0
28 TraesCS1D01G140600 chr3B 92.727 165 11 1 4864 5027 328715434 328715598 4.590000e-58 237.0
29 TraesCS1D01G140600 chr3B 91.743 109 9 0 4511 4619 118309519 118309411 1.710000e-32 152.0
30 TraesCS1D01G140600 chr3B 94.845 97 4 1 4515 4610 261980620 261980716 6.150000e-32 150.0
31 TraesCS1D01G140600 chr5B 94.545 165 9 0 3081 3245 93221576 93221412 1.270000e-63 255.0
32 TraesCS1D01G140600 chr2D 95.062 162 8 0 3084 3245 639533856 639533695 1.270000e-63 255.0
33 TraesCS1D01G140600 chr2D 90.909 44 2 1 8179 8220 580191373 580191330 3.840000e-04 58.4
34 TraesCS1D01G140600 chrUn 95.031 161 8 0 445 605 60959833 60959673 4.560000e-63 254.0
35 TraesCS1D01G140600 chr7A 93.567 171 10 1 3079 3249 628830837 628831006 4.560000e-63 254.0
36 TraesCS1D01G140600 chr6A 94.012 167 8 2 3081 3246 15552855 15552690 1.640000e-62 252.0
37 TraesCS1D01G140600 chr2A 93.976 166 10 0 3081 3246 11897717 11897882 1.640000e-62 252.0
38 TraesCS1D01G140600 chr2A 94.194 155 8 1 4873 5027 141506471 141506318 1.650000e-57 235.0
39 TraesCS1D01G140600 chr2A 96.842 95 3 0 4516 4610 438726438 438726344 1.020000e-34 159.0
40 TraesCS1D01G140600 chr2A 91.743 109 7 2 4519 4625 622029580 622029688 6.150000e-32 150.0
41 TraesCS1D01G140600 chr7D 93.491 169 9 2 3080 3247 11122706 11122873 5.900000e-62 250.0
42 TraesCS1D01G140600 chr7D 92.442 172 11 1 445 614 137021241 137021070 2.740000e-60 244.0
43 TraesCS1D01G140600 chr7D 93.865 163 9 1 445 607 516058688 516058849 2.740000e-60 244.0
44 TraesCS1D01G140600 chr7D 91.716 169 12 2 4863 5030 454079066 454079233 5.940000e-57 233.0
45 TraesCS1D01G140600 chr7D 92.121 165 12 1 4870 5033 535326656 535326820 2.140000e-56 231.0
46 TraesCS1D01G140600 chr5D 93.827 162 10 0 445 606 464931285 464931446 2.740000e-60 244.0
47 TraesCS1D01G140600 chr5D 92.899 169 9 3 445 613 9077564 9077729 9.870000e-60 243.0
48 TraesCS1D01G140600 chr5D 89.796 49 3 1 8174 8220 478954529 478954577 2.970000e-05 62.1
49 TraesCS1D01G140600 chr4D 93.827 162 9 1 4867 5027 74079343 74079504 9.870000e-60 243.0
50 TraesCS1D01G140600 chr3D 92.857 168 10 2 445 612 5040043 5039878 9.870000e-60 243.0
51 TraesCS1D01G140600 chr3D 94.231 104 5 1 4525 4627 439870529 439870632 3.680000e-34 158.0
52 TraesCS1D01G140600 chr3D 96.629 89 3 0 4525 4613 322016789 322016701 2.210000e-31 148.0
53 TraesCS1D01G140600 chr4A 92.353 170 12 1 445 613 649423748 649423579 3.550000e-59 241.0
54 TraesCS1D01G140600 chr6D 93.082 159 9 2 4873 5030 410398432 410398275 2.140000e-56 231.0
55 TraesCS1D01G140600 chr6D 96.875 32 1 0 8181 8212 445416979 445417010 5.000000e-03 54.7
56 TraesCS1D01G140600 chr3A 91.566 166 12 1 4864 5027 310692098 310691933 2.760000e-55 228.0
57 TraesCS1D01G140600 chr2B 98.913 92 1 0 4522 4613 40437955 40438046 2.200000e-36 165.0
58 TraesCS1D01G140600 chr2B 93.269 104 5 2 4518 4621 496962187 496962086 1.710000e-32 152.0
59 TraesCS1D01G140600 chr5A 90.351 114 8 3 4525 4636 155555894 155556006 7.960000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G140600 chr1D 193499510 193509342 9832 False 6094.400000 18159 96.581333 1 9833 3 chr1D.!!$F1 9832
1 TraesCS1D01G140600 chr1B 268394152 268405699 11547 False 1644.233333 5500 93.998444 1 9833 9 chr1B.!!$F1 9832
2 TraesCS1D01G140600 chr1A 240305283 240315035 9752 False 1444.810000 5358 93.993900 1 9833 10 chr1A.!!$F1 9832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
657 675 0.029167 TGCGAAGTGTGTCGACGTAA 59.971 50.000 11.62 0.0 43.86 3.18 F
1577 2787 0.520412 CGCGCCTTTTCCATGTTACG 60.520 55.000 0.00 0.0 0.00 3.18 F
1863 3074 0.675633 CTTTTGCAGTGGGTTCTGGG 59.324 55.000 0.00 0.0 36.12 4.45 F
3690 4932 1.405463 GCCCACATTGCCTTTAGCTAC 59.595 52.381 0.00 0.0 44.23 3.58 F
4108 5370 0.895530 CGGAAGTACTCCAAGCCTCA 59.104 55.000 0.00 0.0 45.74 3.86 F
5781 7174 0.038744 AGGCCCAGATGTTTGTGAGG 59.961 55.000 0.00 0.0 0.00 3.86 F
5782 7175 0.251341 GGCCCAGATGTTTGTGAGGT 60.251 55.000 0.00 0.0 0.00 3.85 F
6826 8230 1.131315 GGCGATTGAAGCTCTGGTTTC 59.869 52.381 0.00 0.0 34.05 2.78 F
7174 8636 0.531090 CCTCGGTCGGTTCAACAACA 60.531 55.000 0.00 0.0 33.70 3.33 F
7579 9244 1.019673 CGTTCAGGAATGGGATGCAG 58.980 55.000 0.00 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 3009 0.040067 GTAAGCAAGCACACTGGCAC 60.040 55.000 0.00 0.0 46.28 5.01 R
2449 3676 3.739209 GCCAATTCAAAAGGAGGCATAGC 60.739 47.826 0.00 0.0 41.63 2.97 R
3828 5080 0.329261 CAGGCATGAACCTTCTCCCA 59.671 55.000 0.00 0.0 38.26 4.37 R
5178 6570 1.807814 ACCCTATGCCCGATTTCTCT 58.192 50.000 0.00 0.0 0.00 3.10 R
6022 7416 0.326238 TAAGAAGGATGACCGGGGCT 60.326 55.000 6.32 0.0 41.83 5.19 R
6826 8230 0.035439 AACAGGGTTCACCATAGGCG 60.035 55.000 0.00 0.0 43.89 5.52 R
7133 8595 0.612732 CCACATGCCCATCAACACCT 60.613 55.000 0.00 0.0 0.00 4.00 R
8719 10626 1.955778 CTTCATCCCTGCAAACACACA 59.044 47.619 0.00 0.0 0.00 3.72 R
8720 10627 1.956477 ACTTCATCCCTGCAAACACAC 59.044 47.619 0.00 0.0 0.00 3.82 R
9527 11448 1.079127 AGAACCCATTCCTCGTGCG 60.079 57.895 0.00 0.0 35.18 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.839191 GCAGGTGCCTATGATGGGA 59.161 57.895 0.00 0.00 34.31 4.37
66 67 7.627311 CCTATGATGGGATGTTGATATCTTCA 58.373 38.462 3.98 3.80 0.00 3.02
77 78 7.290110 TGTTGATATCTTCAGTGGATACGAT 57.710 36.000 3.98 0.00 35.51 3.73
104 105 3.827008 TCACCCACAATGAGCTCTATC 57.173 47.619 16.19 0.00 0.00 2.08
117 118 2.440627 AGCTCTATCCACCAATCATGCA 59.559 45.455 0.00 0.00 0.00 3.96
121 122 2.902705 ATCCACCAATCATGCAATGC 57.097 45.000 0.00 0.00 46.21 3.56
134 135 1.430632 CAATGCCCGATGTCAGCAC 59.569 57.895 0.00 0.00 39.77 4.40
135 136 1.028330 CAATGCCCGATGTCAGCACT 61.028 55.000 0.00 0.00 39.77 4.40
136 137 0.322816 AATGCCCGATGTCAGCACTT 60.323 50.000 0.00 0.00 39.77 3.16
137 138 1.028330 ATGCCCGATGTCAGCACTTG 61.028 55.000 0.00 0.00 39.77 3.16
178 179 4.397481 TTCATATGGCTGACTCTCAGTG 57.603 45.455 2.13 0.00 45.94 3.66
212 213 3.515602 AGAGCAAAGATGGACCAAGTT 57.484 42.857 0.00 0.00 0.00 2.66
266 267 3.181465 GCAACCTATTTCGAGGATGAGGA 60.181 47.826 4.09 0.00 40.87 3.71
276 277 1.450312 GGATGAGGAAGGTGGTGCG 60.450 63.158 0.00 0.00 0.00 5.34
305 306 8.116651 TCATCGTTTTTGAGGGATGAAAAATA 57.883 30.769 0.45 0.00 41.50 1.40
348 365 0.811219 CGCGGATGCTCTTTCCATGA 60.811 55.000 0.00 0.00 39.65 3.07
352 369 2.611292 CGGATGCTCTTTCCATGAAGAC 59.389 50.000 0.00 0.00 32.50 3.01
355 372 4.096081 GGATGCTCTTTCCATGAAGACAAG 59.904 45.833 0.00 0.00 32.50 3.16
426 444 8.777865 TCGAATTAAAGTTGAATCTGACTCAT 57.222 30.769 0.00 0.00 0.00 2.90
445 463 7.862372 TGACTCATTTAATGTGCTTGAGTTTTC 59.138 33.333 4.77 0.00 45.13 2.29
447 465 6.148948 TCATTTAATGTGCTTGAGTTTTCCG 58.851 36.000 4.77 0.00 0.00 4.30
448 466 4.497473 TTAATGTGCTTGAGTTTTCCGG 57.503 40.909 0.00 0.00 0.00 5.14
449 467 0.598065 ATGTGCTTGAGTTTTCCGGC 59.402 50.000 0.00 0.00 0.00 6.13
451 469 1.227704 TGCTTGAGTTTTCCGGCGA 60.228 52.632 9.30 0.00 0.00 5.54
452 470 0.605319 TGCTTGAGTTTTCCGGCGAT 60.605 50.000 9.30 0.00 0.00 4.58
454 472 0.447801 CTTGAGTTTTCCGGCGATGG 59.552 55.000 9.30 0.00 0.00 3.51
455 473 0.035598 TTGAGTTTTCCGGCGATGGA 59.964 50.000 9.30 0.00 35.83 3.41
456 474 0.391130 TGAGTTTTCCGGCGATGGAG 60.391 55.000 9.30 0.00 39.72 3.86
457 475 1.078426 AGTTTTCCGGCGATGGAGG 60.078 57.895 9.30 0.00 39.72 4.30
458 476 2.112815 GTTTTCCGGCGATGGAGGG 61.113 63.158 9.30 0.00 39.72 4.30
459 477 3.338275 TTTTCCGGCGATGGAGGGG 62.338 63.158 9.30 0.00 39.72 4.79
464 482 4.996434 GGCGATGGAGGGGCGATG 62.996 72.222 0.00 0.00 0.00 3.84
465 483 3.928779 GCGATGGAGGGGCGATGA 61.929 66.667 0.00 0.00 0.00 2.92
466 484 2.029666 CGATGGAGGGGCGATGAC 59.970 66.667 0.00 0.00 0.00 3.06
467 485 2.796193 CGATGGAGGGGCGATGACA 61.796 63.158 0.00 0.00 0.00 3.58
468 486 1.070445 GATGGAGGGGCGATGACAG 59.930 63.158 0.00 0.00 0.00 3.51
469 487 3.112205 ATGGAGGGGCGATGACAGC 62.112 63.158 0.00 0.00 0.00 4.40
470 488 4.899239 GGAGGGGCGATGACAGCG 62.899 72.222 9.11 9.11 35.00 5.18
471 489 4.899239 GAGGGGCGATGACAGCGG 62.899 72.222 15.74 0.00 35.00 5.52
492 510 2.742372 GCCTTCGGCTCGCTTCAA 60.742 61.111 0.00 0.00 46.69 2.69
493 511 2.109126 GCCTTCGGCTCGCTTCAAT 61.109 57.895 0.00 0.00 46.69 2.57
494 512 1.717937 CCTTCGGCTCGCTTCAATG 59.282 57.895 0.00 0.00 0.00 2.82
495 513 1.061570 CTTCGGCTCGCTTCAATGC 59.938 57.895 0.00 0.00 0.00 3.56
496 514 1.364626 CTTCGGCTCGCTTCAATGCT 61.365 55.000 0.00 0.00 0.00 3.79
497 515 0.955428 TTCGGCTCGCTTCAATGCTT 60.955 50.000 0.00 0.00 0.00 3.91
498 516 1.226211 CGGCTCGCTTCAATGCTTG 60.226 57.895 0.00 0.00 0.00 4.01
499 517 1.878775 GGCTCGCTTCAATGCTTGT 59.121 52.632 0.00 0.00 0.00 3.16
500 518 1.086696 GGCTCGCTTCAATGCTTGTA 58.913 50.000 0.00 0.00 0.00 2.41
501 519 1.063174 GGCTCGCTTCAATGCTTGTAG 59.937 52.381 0.00 0.00 0.00 2.74
502 520 1.734465 GCTCGCTTCAATGCTTGTAGT 59.266 47.619 0.00 0.00 31.53 2.73
503 521 2.222908 GCTCGCTTCAATGCTTGTAGTC 60.223 50.000 0.00 0.00 31.53 2.59
504 522 1.992667 TCGCTTCAATGCTTGTAGTCG 59.007 47.619 0.00 0.44 33.03 4.18
505 523 1.726791 CGCTTCAATGCTTGTAGTCGT 59.273 47.619 0.00 0.00 31.53 4.34
506 524 2.222596 CGCTTCAATGCTTGTAGTCGTC 60.223 50.000 0.00 0.00 31.53 4.20
507 525 2.222596 GCTTCAATGCTTGTAGTCGTCG 60.223 50.000 0.00 0.00 31.53 5.12
508 526 1.346365 TCAATGCTTGTAGTCGTCGC 58.654 50.000 0.00 0.00 0.00 5.19
509 527 1.067846 TCAATGCTTGTAGTCGTCGCT 60.068 47.619 0.00 0.00 0.00 4.93
510 528 1.059692 CAATGCTTGTAGTCGTCGCTG 59.940 52.381 0.00 0.00 0.00 5.18
511 529 0.458543 ATGCTTGTAGTCGTCGCTGG 60.459 55.000 0.00 0.00 0.00 4.85
512 530 1.211969 GCTTGTAGTCGTCGCTGGA 59.788 57.895 0.00 0.00 0.00 3.86
513 531 0.179134 GCTTGTAGTCGTCGCTGGAT 60.179 55.000 0.00 0.00 0.00 3.41
514 532 1.550065 CTTGTAGTCGTCGCTGGATG 58.450 55.000 0.00 0.00 0.00 3.51
515 533 0.172578 TTGTAGTCGTCGCTGGATGG 59.827 55.000 0.00 0.00 0.00 3.51
516 534 0.963856 TGTAGTCGTCGCTGGATGGT 60.964 55.000 0.00 0.00 0.00 3.55
517 535 0.248539 GTAGTCGTCGCTGGATGGTC 60.249 60.000 0.00 0.00 0.00 4.02
518 536 0.393944 TAGTCGTCGCTGGATGGTCT 60.394 55.000 0.00 0.00 0.00 3.85
519 537 0.393944 AGTCGTCGCTGGATGGTCTA 60.394 55.000 0.00 0.00 0.00 2.59
520 538 0.248539 GTCGTCGCTGGATGGTCTAC 60.249 60.000 0.00 0.00 0.00 2.59
521 539 0.678684 TCGTCGCTGGATGGTCTACA 60.679 55.000 0.00 0.00 0.00 2.74
522 540 0.248661 CGTCGCTGGATGGTCTACAG 60.249 60.000 0.00 0.00 35.40 2.74
523 541 1.103803 GTCGCTGGATGGTCTACAGA 58.896 55.000 0.00 0.00 34.21 3.41
524 542 1.683917 GTCGCTGGATGGTCTACAGAT 59.316 52.381 0.00 0.00 34.21 2.90
525 543 1.957177 TCGCTGGATGGTCTACAGATC 59.043 52.381 0.00 0.00 34.21 2.75
526 544 1.959985 CGCTGGATGGTCTACAGATCT 59.040 52.381 0.00 0.00 34.21 2.75
527 545 3.149981 CGCTGGATGGTCTACAGATCTA 58.850 50.000 0.00 0.00 34.21 1.98
528 546 3.190327 CGCTGGATGGTCTACAGATCTAG 59.810 52.174 0.00 0.00 34.21 2.43
529 547 4.402829 GCTGGATGGTCTACAGATCTAGA 58.597 47.826 0.00 0.00 34.21 2.43
530 548 5.016173 GCTGGATGGTCTACAGATCTAGAT 58.984 45.833 4.47 4.47 34.21 1.98
531 549 5.105797 GCTGGATGGTCTACAGATCTAGATG 60.106 48.000 10.74 0.14 34.21 2.90
532 550 5.958321 TGGATGGTCTACAGATCTAGATGT 58.042 41.667 10.74 7.11 0.00 3.06
533 551 7.091533 TGGATGGTCTACAGATCTAGATGTA 57.908 40.000 10.74 7.96 0.00 2.29
534 552 7.526918 TGGATGGTCTACAGATCTAGATGTAA 58.473 38.462 10.74 0.00 31.81 2.41
535 553 8.173412 TGGATGGTCTACAGATCTAGATGTAAT 58.827 37.037 10.74 0.47 31.81 1.89
536 554 9.030452 GGATGGTCTACAGATCTAGATGTAATT 57.970 37.037 10.74 0.00 31.81 1.40
560 578 8.983307 TTTTTATTTTTGGTGTTCGTTGTACT 57.017 26.923 0.00 0.00 0.00 2.73
561 579 7.972623 TTTATTTTTGGTGTTCGTTGTACTG 57.027 32.000 0.00 0.00 0.00 2.74
562 580 3.408288 TTTTGGTGTTCGTTGTACTGC 57.592 42.857 0.00 0.00 0.00 4.40
563 581 1.301423 TTGGTGTTCGTTGTACTGCC 58.699 50.000 0.00 0.00 0.00 4.85
564 582 0.178301 TGGTGTTCGTTGTACTGCCA 59.822 50.000 0.00 0.00 0.00 4.92
565 583 1.202710 TGGTGTTCGTTGTACTGCCAT 60.203 47.619 0.00 0.00 0.00 4.40
566 584 1.196808 GGTGTTCGTTGTACTGCCATG 59.803 52.381 0.00 0.00 0.00 3.66
567 585 2.139917 GTGTTCGTTGTACTGCCATGA 58.860 47.619 0.00 0.00 0.00 3.07
568 586 2.742053 GTGTTCGTTGTACTGCCATGAT 59.258 45.455 0.00 0.00 0.00 2.45
569 587 3.188460 GTGTTCGTTGTACTGCCATGATT 59.812 43.478 0.00 0.00 0.00 2.57
570 588 3.188254 TGTTCGTTGTACTGCCATGATTG 59.812 43.478 0.00 0.00 0.00 2.67
571 589 3.326836 TCGTTGTACTGCCATGATTGA 57.673 42.857 0.00 0.00 0.00 2.57
572 590 3.669536 TCGTTGTACTGCCATGATTGAA 58.330 40.909 0.00 0.00 0.00 2.69
573 591 3.684305 TCGTTGTACTGCCATGATTGAAG 59.316 43.478 0.00 0.00 0.00 3.02
574 592 3.684305 CGTTGTACTGCCATGATTGAAGA 59.316 43.478 0.00 0.00 0.00 2.87
575 593 4.333649 CGTTGTACTGCCATGATTGAAGAT 59.666 41.667 0.00 0.00 0.00 2.40
576 594 5.575957 GTTGTACTGCCATGATTGAAGATG 58.424 41.667 0.00 0.00 0.00 2.90
577 595 5.101648 TGTACTGCCATGATTGAAGATGA 57.898 39.130 0.00 0.00 0.00 2.92
578 596 5.499313 TGTACTGCCATGATTGAAGATGAA 58.501 37.500 0.00 0.00 0.00 2.57
579 597 6.124340 TGTACTGCCATGATTGAAGATGAAT 58.876 36.000 0.00 0.00 0.00 2.57
580 598 7.281841 TGTACTGCCATGATTGAAGATGAATA 58.718 34.615 0.00 0.00 0.00 1.75
581 599 6.879276 ACTGCCATGATTGAAGATGAATAG 57.121 37.500 0.00 0.00 0.00 1.73
582 600 6.598503 ACTGCCATGATTGAAGATGAATAGA 58.401 36.000 0.00 0.00 0.00 1.98
583 601 7.232188 ACTGCCATGATTGAAGATGAATAGAT 58.768 34.615 0.00 0.00 0.00 1.98
584 602 7.724506 ACTGCCATGATTGAAGATGAATAGATT 59.275 33.333 0.00 0.00 0.00 2.40
585 603 7.882179 TGCCATGATTGAAGATGAATAGATTG 58.118 34.615 0.00 0.00 0.00 2.67
586 604 7.039993 TGCCATGATTGAAGATGAATAGATTGG 60.040 37.037 0.00 0.00 0.00 3.16
587 605 7.176165 GCCATGATTGAAGATGAATAGATTGGA 59.824 37.037 0.00 0.00 0.00 3.53
588 606 9.074576 CCATGATTGAAGATGAATAGATTGGAA 57.925 33.333 0.00 0.00 0.00 3.53
590 608 9.863650 ATGATTGAAGATGAATAGATTGGAAGT 57.136 29.630 0.00 0.00 0.00 3.01
591 609 9.690913 TGATTGAAGATGAATAGATTGGAAGTT 57.309 29.630 0.00 0.00 0.00 2.66
595 613 9.745018 TGAAGATGAATAGATTGGAAGTTTTCT 57.255 29.630 0.00 0.00 0.00 2.52
597 615 8.430801 AGATGAATAGATTGGAAGTTTTCTCG 57.569 34.615 0.00 0.00 0.00 4.04
598 616 8.260818 AGATGAATAGATTGGAAGTTTTCTCGA 58.739 33.333 0.00 0.00 0.00 4.04
599 617 8.792830 ATGAATAGATTGGAAGTTTTCTCGAA 57.207 30.769 0.00 0.00 0.00 3.71
600 618 8.615878 TGAATAGATTGGAAGTTTTCTCGAAA 57.384 30.769 0.00 0.00 0.00 3.46
654 672 0.111704 CTTTGCGAAGTGTGTCGACG 60.112 55.000 11.62 0.00 43.86 5.12
657 675 0.029167 TGCGAAGTGTGTCGACGTAA 59.971 50.000 11.62 0.00 43.86 3.18
692 710 6.709281 TGGGAACGACACCTAATTATTGTTA 58.291 36.000 0.00 0.00 0.00 2.41
693 711 6.594937 TGGGAACGACACCTAATTATTGTTAC 59.405 38.462 0.00 0.00 0.00 2.50
694 712 6.820152 GGGAACGACACCTAATTATTGTTACT 59.180 38.462 0.00 0.00 0.00 2.24
695 713 7.981225 GGGAACGACACCTAATTATTGTTACTA 59.019 37.037 0.00 0.00 0.00 1.82
696 714 9.369904 GGAACGACACCTAATTATTGTTACTAA 57.630 33.333 0.00 0.00 0.00 2.24
985 2194 4.422057 TCCCTAAAATCTTCCCCAAAACC 58.578 43.478 0.00 0.00 0.00 3.27
986 2195 3.517901 CCCTAAAATCTTCCCCAAAACCC 59.482 47.826 0.00 0.00 0.00 4.11
1577 2787 0.520412 CGCGCCTTTTCCATGTTACG 60.520 55.000 0.00 0.00 0.00 3.18
1606 2816 3.243636 GGGCTATGTGGAAATTGCTCATG 60.244 47.826 11.37 4.26 30.28 3.07
1798 3009 9.025020 CATTAGTTGTCTTGTAGTAGCATACAG 57.975 37.037 0.00 0.00 46.26 2.74
1837 3048 4.616181 ACGAAGCTAAATATGTTGTGCC 57.384 40.909 0.00 0.00 0.00 5.01
1863 3074 0.675633 CTTTTGCAGTGGGTTCTGGG 59.324 55.000 0.00 0.00 36.12 4.45
1915 3126 6.146184 CCTGACTGGTTCGTTATATGCATTAG 59.854 42.308 3.54 0.00 0.00 1.73
1916 3127 6.578944 TGACTGGTTCGTTATATGCATTAGT 58.421 36.000 3.54 0.00 0.00 2.24
1928 3139 9.657121 GTTATATGCATTAGTTTCTCTGCTTTC 57.343 33.333 3.54 0.00 35.66 2.62
1937 3148 5.380043 AGTTTCTCTGCTTTCTGAATTGGA 58.620 37.500 0.00 0.00 0.00 3.53
2013 3228 2.453521 GGGGAATGTAGTTTTGACCCC 58.546 52.381 0.00 0.00 46.75 4.95
2082 3299 9.872721 ATATCATAGCATTGACATCAGAACTAG 57.127 33.333 0.00 0.00 0.00 2.57
2084 3301 8.237811 TCATAGCATTGACATCAGAACTAGTA 57.762 34.615 0.00 0.00 0.00 1.82
2140 3357 8.675705 AAGGTTTAGCATGCTTTTGTTTTATT 57.324 26.923 28.02 6.89 0.00 1.40
2230 3447 8.815141 TTCATGTCCAATGATTTTGTAAGTTG 57.185 30.769 0.00 0.00 0.00 3.16
2236 3453 5.352016 CCAATGATTTTGTAAGTTGCCCATG 59.648 40.000 0.00 0.00 0.00 3.66
2275 3492 7.886629 AATTTGATTACATGCACAGTATCCT 57.113 32.000 0.00 0.00 0.00 3.24
2327 3544 7.682459 TCCTAGCCCCTATAATGAACATTCATA 59.318 37.037 7.52 0.00 46.60 2.15
2449 3676 5.067674 CCCTACAAACACCACATTCATATGG 59.932 44.000 2.13 0.00 42.13 2.74
2629 3856 8.043710 TCTCTTCCTCATTCCTATTTCAGTTTC 58.956 37.037 0.00 0.00 0.00 2.78
2659 3886 6.677920 GCACGGATGTTAGTTCATGCTTTATT 60.678 38.462 0.00 0.00 34.73 1.40
2673 3900 8.109705 TCATGCTTTATTGGCGTATCATTAAT 57.890 30.769 0.00 0.00 0.00 1.40
2958 4186 6.354622 GTCGAATCGCTACTTTAATTGATTGC 59.645 38.462 0.00 0.00 0.00 3.56
2965 4193 6.682863 CGCTACTTTAATTGATTGCACACTAC 59.317 38.462 0.00 0.00 0.00 2.73
3037 4265 6.350629 AGCCAGCTAAAATTCTGTTTTCAT 57.649 33.333 0.00 0.00 0.00 2.57
3398 4626 8.795842 TTATTGGTTGATCCTAAACGTGTTAT 57.204 30.769 0.00 0.00 37.07 1.89
3399 4627 6.489127 TTGGTTGATCCTAAACGTGTTATG 57.511 37.500 0.00 0.00 37.07 1.90
3475 4711 9.836864 TTAGATTGTTTGTATCATATGCACTCT 57.163 29.630 0.00 0.83 0.00 3.24
3609 4845 6.030228 GTGGCTAAATTTGCAGTATCACTTC 58.970 40.000 0.00 0.00 0.00 3.01
3690 4932 1.405463 GCCCACATTGCCTTTAGCTAC 59.595 52.381 0.00 0.00 44.23 3.58
3733 4975 8.223769 GGTTGCATTATGTCTATGTTAATCTCG 58.776 37.037 0.00 0.00 0.00 4.04
3778 5020 5.105146 GCCTCTCTTTCTTCTCATTAGGTCA 60.105 44.000 0.00 0.00 0.00 4.02
3828 5080 3.062889 TCTCTCTCTCTCTCCATGGGAT 58.937 50.000 13.02 0.00 0.00 3.85
3878 5131 1.409427 CCGCACCCCTTGTTTGTTTTA 59.591 47.619 0.00 0.00 0.00 1.52
3955 5212 0.968405 ATGACGGCAAAATGGCTTGT 59.032 45.000 0.00 0.00 41.25 3.16
4106 5368 3.068562 ACGGAAGTACTCCAAGCCT 57.931 52.632 0.00 0.00 45.74 4.58
4107 5369 0.896226 ACGGAAGTACTCCAAGCCTC 59.104 55.000 0.00 0.00 45.74 4.70
4108 5370 0.895530 CGGAAGTACTCCAAGCCTCA 59.104 55.000 0.00 0.00 45.74 3.86
4109 5371 1.134965 CGGAAGTACTCCAAGCCTCAG 60.135 57.143 0.00 0.00 45.74 3.35
4110 5372 2.180276 GGAAGTACTCCAAGCCTCAGA 58.820 52.381 0.00 0.00 44.67 3.27
4111 5373 2.167487 GGAAGTACTCCAAGCCTCAGAG 59.833 54.545 0.00 0.00 44.67 3.35
4112 5374 2.614134 AGTACTCCAAGCCTCAGAGT 57.386 50.000 0.00 2.58 43.17 3.24
4234 5496 2.094417 GGACTTGCTACATTCGCAGTTC 59.906 50.000 0.00 0.00 38.80 3.01
4311 5694 1.065491 CCAGTGTGGCTAGGTGCATTA 60.065 52.381 0.00 0.00 45.15 1.90
4338 5721 6.392354 TGATGACAGAAGGATTGCATTTTTC 58.608 36.000 0.00 0.00 0.00 2.29
4339 5722 5.138125 TGACAGAAGGATTGCATTTTTCC 57.862 39.130 0.00 0.00 0.00 3.13
4340 5723 4.021192 TGACAGAAGGATTGCATTTTTCCC 60.021 41.667 0.00 0.00 0.00 3.97
4342 5725 3.261390 CAGAAGGATTGCATTTTTCCCCA 59.739 43.478 0.00 0.00 0.00 4.96
4343 5726 4.080751 CAGAAGGATTGCATTTTTCCCCAT 60.081 41.667 0.00 0.00 0.00 4.00
4344 5727 4.162888 AGAAGGATTGCATTTTTCCCCATC 59.837 41.667 0.00 0.00 0.00 3.51
4345 5728 3.452878 AGGATTGCATTTTTCCCCATCA 58.547 40.909 0.00 0.00 0.00 3.07
4346 5729 4.042174 AGGATTGCATTTTTCCCCATCAT 58.958 39.130 0.00 0.00 0.00 2.45
4430 5815 9.895138 ATAGGTACAATTACAAAAATAGACCGT 57.105 29.630 0.00 0.00 0.00 4.83
4534 5919 8.118976 TGTGATTTTAGTATATACTCCCTCCG 57.881 38.462 18.68 0.00 37.73 4.63
4535 5920 7.727186 TGTGATTTTAGTATATACTCCCTCCGT 59.273 37.037 18.68 0.96 37.73 4.69
4536 5921 8.583296 GTGATTTTAGTATATACTCCCTCCGTT 58.417 37.037 18.68 0.00 37.73 4.44
4537 5922 8.800332 TGATTTTAGTATATACTCCCTCCGTTC 58.200 37.037 18.68 7.41 37.73 3.95
4538 5923 7.530426 TTTTAGTATATACTCCCTCCGTTCC 57.470 40.000 18.68 0.00 37.73 3.62
4539 5924 4.736611 AGTATATACTCCCTCCGTTCCA 57.263 45.455 9.71 0.00 0.00 3.53
4540 5925 5.070823 AGTATATACTCCCTCCGTTCCAA 57.929 43.478 9.71 0.00 0.00 3.53
4541 5926 5.461327 AGTATATACTCCCTCCGTTCCAAA 58.539 41.667 9.71 0.00 0.00 3.28
4542 5927 5.901276 AGTATATACTCCCTCCGTTCCAAAA 59.099 40.000 9.71 0.00 0.00 2.44
4543 5928 5.906772 ATATACTCCCTCCGTTCCAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
4544 5929 7.731688 AGTATATACTCCCTCCGTTCCAAAATA 59.268 37.037 9.71 0.00 0.00 1.40
4545 5930 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4546 5931 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4547 5932 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4548 5933 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4549 5934 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4550 5935 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4551 5936 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
4552 5937 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
4553 5938 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
4554 5939 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
4555 5940 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
4556 5941 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
4557 5942 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
4558 5943 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
4559 5944 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
4560 5945 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
4561 5946 6.015519 TCCAAAATAGATGACCCAACTTTGTG 60.016 38.462 0.00 0.00 0.00 3.33
4562 5947 5.391312 AAATAGATGACCCAACTTTGTGC 57.609 39.130 0.00 0.00 0.00 4.57
4563 5948 2.664402 AGATGACCCAACTTTGTGCT 57.336 45.000 0.00 0.00 0.00 4.40
4564 5949 3.788227 AGATGACCCAACTTTGTGCTA 57.212 42.857 0.00 0.00 0.00 3.49
4565 5950 4.098914 AGATGACCCAACTTTGTGCTAA 57.901 40.909 0.00 0.00 0.00 3.09
4566 5951 3.821033 AGATGACCCAACTTTGTGCTAAC 59.179 43.478 0.00 0.00 0.00 2.34
4567 5952 3.290948 TGACCCAACTTTGTGCTAACT 57.709 42.857 0.00 0.00 0.00 2.24
4568 5953 3.626930 TGACCCAACTTTGTGCTAACTT 58.373 40.909 0.00 0.00 0.00 2.66
4569 5954 4.020543 TGACCCAACTTTGTGCTAACTTT 58.979 39.130 0.00 0.00 0.00 2.66
4570 5955 5.194432 TGACCCAACTTTGTGCTAACTTTA 58.806 37.500 0.00 0.00 0.00 1.85
4571 5956 5.298276 TGACCCAACTTTGTGCTAACTTTAG 59.702 40.000 0.00 0.00 0.00 1.85
4572 5957 5.198207 ACCCAACTTTGTGCTAACTTTAGT 58.802 37.500 0.00 0.00 33.32 2.24
4573 5958 6.358991 ACCCAACTTTGTGCTAACTTTAGTA 58.641 36.000 0.00 0.00 33.32 1.82
4574 5959 6.261603 ACCCAACTTTGTGCTAACTTTAGTAC 59.738 38.462 9.56 9.56 43.76 2.73
4583 5968 6.665465 GTGCTAACTTTAGTACAAAGTTGGG 58.335 40.000 27.85 23.13 46.41 4.12
4584 5969 6.261603 GTGCTAACTTTAGTACAAAGTTGGGT 59.738 38.462 27.85 15.55 46.41 4.51
4585 5970 6.484308 TGCTAACTTTAGTACAAAGTTGGGTC 59.516 38.462 27.85 19.67 46.41 4.46
4586 5971 6.484308 GCTAACTTTAGTACAAAGTTGGGTCA 59.516 38.462 27.85 16.53 46.41 4.02
4587 5972 7.174426 GCTAACTTTAGTACAAAGTTGGGTCAT 59.826 37.037 27.85 14.43 46.41 3.06
4588 5973 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
4589 5974 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
4590 5975 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
4591 5976 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
4592 5977 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
4593 5978 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
4594 5979 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
4595 5980 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
4596 5981 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
4597 5982 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
4598 5983 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
4599 5984 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
4600 5985 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
4601 5986 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
4602 5987 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
4603 5988 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
4604 5989 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
4605 5990 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4606 5991 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4607 5992 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4908 6296 8.450964 CGTTCACAAATATAAGATGTTCCAACT 58.549 33.333 0.00 0.00 0.00 3.16
5109 6497 6.183360 GCATACACTTGTTAGCAACAGTCTAG 60.183 42.308 0.00 0.00 43.27 2.43
5173 6565 2.166459 CTGAAGAGAACCAGATGCGGTA 59.834 50.000 0.00 0.00 38.76 4.02
5178 6570 2.429610 GAGAACCAGATGCGGTAGGTTA 59.570 50.000 3.80 0.00 43.94 2.85
5211 6603 5.221925 GGGCATAGGGTTGAGATGATAGAAA 60.222 44.000 0.00 0.00 0.00 2.52
5212 6604 6.479884 GGCATAGGGTTGAGATGATAGAAAT 58.520 40.000 0.00 0.00 0.00 2.17
5597 6990 1.881973 GCCACATGACAGTGACACATT 59.118 47.619 8.59 0.00 42.05 2.71
5743 7136 8.760569 GTGGTTTTGTTTATTTGGAAGTGTATG 58.239 33.333 0.00 0.00 0.00 2.39
5781 7174 0.038744 AGGCCCAGATGTTTGTGAGG 59.961 55.000 0.00 0.00 0.00 3.86
5782 7175 0.251341 GGCCCAGATGTTTGTGAGGT 60.251 55.000 0.00 0.00 0.00 3.85
6022 7416 2.099652 CTCCTCCGCAGTTCACCACA 62.100 60.000 0.00 0.00 0.00 4.17
6073 7467 2.139118 CTAGCTTCTTATTCAGCGCCC 58.861 52.381 2.29 0.00 41.24 6.13
6170 7564 1.416401 TGACCCTGGTTCAGTGTCTTC 59.584 52.381 10.76 0.00 39.10 2.87
6203 7597 2.665000 CCAGCGATGTCCACCACT 59.335 61.111 0.00 0.00 0.00 4.00
6236 7637 2.283532 AGCCGCTGTGGAGTCTCT 60.284 61.111 12.29 0.00 42.00 3.10
6262 7666 5.769662 ACACACACATGTTATCCTTCAATGT 59.230 36.000 0.00 0.00 36.72 2.71
6280 7684 5.528690 TCAATGTATTTGGTCAGCAGATAGC 59.471 40.000 0.00 0.00 38.62 2.97
6281 7685 7.669244 TCAATGTATTTGGTCAGCAGATAGCG 61.669 42.308 0.00 0.00 41.28 4.26
6291 7695 1.961180 GCAGATAGCGGGTGGTGTCT 61.961 60.000 0.00 0.00 43.71 3.41
6393 7797 2.379005 TCTCTGGCGATCTATGTGTGT 58.621 47.619 0.00 0.00 0.00 3.72
6511 7915 5.065218 CGGTGATGGTTTTCTTTATCTCCTG 59.935 44.000 0.00 0.00 33.33 3.86
6749 8153 3.006967 TCAGTAACTTCCTCAACCTCTGC 59.993 47.826 0.00 0.00 0.00 4.26
6826 8230 1.131315 GGCGATTGAAGCTCTGGTTTC 59.869 52.381 0.00 0.00 34.05 2.78
6884 8332 2.325082 GGTTCGCGTGGCATTCTGT 61.325 57.895 5.77 0.00 0.00 3.41
6892 8340 2.632377 CGTGGCATTCTGTATGGTTCT 58.368 47.619 0.00 0.00 34.66 3.01
7133 8595 2.375509 TGGCGTAGATATCTCCTGAGGA 59.624 50.000 8.95 0.00 0.00 3.71
7174 8636 0.531090 CCTCGGTCGGTTCAACAACA 60.531 55.000 0.00 0.00 33.70 3.33
7560 9225 6.437928 TGTAGATTGTTTTCAACATGTGAGC 58.562 36.000 0.00 0.00 42.94 4.26
7571 9236 2.079158 ACATGTGAGCGTTCAGGAATG 58.921 47.619 0.73 9.71 32.98 2.67
7579 9244 1.019673 CGTTCAGGAATGGGATGCAG 58.980 55.000 0.00 0.00 0.00 4.41
7682 9347 2.959507 ACTTTTGGTTGGTGTTCAGC 57.040 45.000 0.00 0.00 0.00 4.26
7992 9671 7.776969 ACATAATACCATCTGCATTCTGAACTT 59.223 33.333 0.00 0.00 0.00 2.66
8080 9952 3.832490 AGCTAATGAGTGGTACAGTGACA 59.168 43.478 0.00 0.00 45.14 3.58
8089 9961 1.151668 GTACAGTGACAGCTTGCTGG 58.848 55.000 23.98 10.18 33.62 4.85
8151 10024 3.529533 CAATTCTCTACAGCCAGTGAGG 58.470 50.000 0.00 0.00 41.84 3.86
8239 10114 6.560253 ACAACTCCGATCCATATTAATTGC 57.440 37.500 0.00 0.00 0.00 3.56
8303 10178 2.490115 ACGAAAGTGCTCAACAACCAAA 59.510 40.909 0.00 0.00 46.97 3.28
8333 10208 4.168922 TGAGTGATTGCTTGCTGAATTG 57.831 40.909 0.00 0.00 0.00 2.32
8374 10249 8.175716 GTGTACTGAATAGAAAACTGTAATGCC 58.824 37.037 0.00 0.00 0.00 4.40
8376 10251 6.485171 ACTGAATAGAAAACTGTAATGCCCT 58.515 36.000 0.00 0.00 0.00 5.19
8377 10252 7.630082 ACTGAATAGAAAACTGTAATGCCCTA 58.370 34.615 0.00 0.00 0.00 3.53
8378 10253 7.770897 ACTGAATAGAAAACTGTAATGCCCTAG 59.229 37.037 0.00 0.00 0.00 3.02
8641 10516 4.805719 GCTTTTGGCAGTATTATTTCAGCC 59.194 41.667 0.00 0.00 42.32 4.85
8645 10520 5.630415 TGGCAGTATTATTTCAGCCTACT 57.370 39.130 0.00 0.00 42.46 2.57
8814 10721 1.001641 CCCTGGGGAGTCAAAGCAG 60.002 63.158 4.27 0.00 37.50 4.24
8896 10804 1.123576 CATGTGTTGTCGTCGTTACCG 59.876 52.381 0.00 0.00 0.00 4.02
8915 10823 3.945285 ACCGATGATGTTTATGTTGGACC 59.055 43.478 0.00 0.00 0.00 4.46
9051 10959 6.499234 TTATTCTGTTGTCATGTCATGTGG 57.501 37.500 12.54 0.00 0.00 4.17
9061 10969 5.779771 TGTCATGTCATGTGGCCTATATCTA 59.220 40.000 12.54 0.00 0.00 1.98
9171 11079 1.004862 TCCGTCCCATGTTAATTGCCA 59.995 47.619 0.00 0.00 0.00 4.92
9179 11087 6.204882 GTCCCATGTTAATTGCCACTAGATAC 59.795 42.308 0.00 0.00 0.00 2.24
9385 11297 0.886490 AAAGCACCTGAGAAGCCGTG 60.886 55.000 0.00 0.00 0.00 4.94
9442 11354 6.715344 TCAATTTAACTAATTCTCGCGTGT 57.285 33.333 5.77 0.00 34.19 4.49
9518 11430 3.111853 GTGAGTTCACATCTCCACACA 57.888 47.619 7.37 0.00 45.75 3.72
9568 11489 2.428071 GTGGTCGTGGTCGTCGTC 60.428 66.667 0.00 0.00 38.33 4.20
9569 11490 4.016629 TGGTCGTGGTCGTCGTCG 62.017 66.667 0.00 0.00 38.33 5.12
9570 11491 3.716006 GGTCGTGGTCGTCGTCGA 61.716 66.667 0.00 0.00 44.12 4.20
9571 11492 2.202146 GTCGTGGTCGTCGTCGAG 60.202 66.667 4.68 0.00 46.96 4.04
9572 11493 2.356194 TCGTGGTCGTCGTCGAGA 60.356 61.111 4.68 0.00 46.96 4.04
9573 11494 1.955663 TCGTGGTCGTCGTCGAGAA 60.956 57.895 4.68 0.00 46.96 2.87
9574 11495 1.082561 CGTGGTCGTCGTCGAGAAA 60.083 57.895 4.68 0.00 46.96 2.52
9575 11496 0.453950 CGTGGTCGTCGTCGAGAAAT 60.454 55.000 4.68 0.00 46.96 2.17
9576 11497 0.982673 GTGGTCGTCGTCGAGAAATG 59.017 55.000 4.68 0.00 46.96 2.32
9577 11498 0.876399 TGGTCGTCGTCGAGAAATGA 59.124 50.000 4.68 0.00 46.96 2.57
9632 11553 1.886313 CCAGCCGCTGTGCATCTAG 60.886 63.158 18.98 0.00 0.00 2.43
9749 11716 1.749665 CAACCCGTGTAGGTGGTCA 59.250 57.895 0.00 0.00 40.05 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.067106 TGCCTTCGATCAAGACTTGTTC 58.933 45.455 14.75 14.32 33.29 3.18
47 48 5.370584 TCCACTGAAGATATCAACATCCCAT 59.629 40.000 5.32 0.00 37.67 4.00
52 53 7.290110 TCGTATCCACTGAAGATATCAACAT 57.710 36.000 5.32 0.00 37.67 2.71
66 67 3.319405 GGTGATCTGACATCGTATCCACT 59.681 47.826 0.00 0.00 0.00 4.00
77 78 2.616256 GCTCATTGTGGGTGATCTGACA 60.616 50.000 0.00 0.00 0.00 3.58
104 105 0.179067 GGGCATTGCATGATTGGTGG 60.179 55.000 11.39 0.00 0.00 4.61
117 118 0.322816 AAGTGCTGACATCGGGCATT 60.323 50.000 3.35 0.00 38.27 3.56
121 122 3.181367 GCAAGTGCTGACATCGGG 58.819 61.111 0.00 0.00 38.21 5.14
178 179 1.604604 TGCTCTTTGTTGGGTGTAGC 58.395 50.000 0.00 0.00 0.00 3.58
266 267 2.154854 CGATGATATCGCACCACCTT 57.845 50.000 0.00 0.00 46.55 3.50
276 277 7.496529 TTCATCCCTCAAAAACGATGATATC 57.503 36.000 0.00 0.00 40.45 1.63
305 306 3.004734 GCACCTTACTGCAAGAAACACAT 59.995 43.478 0.00 0.00 36.22 3.21
339 356 2.517959 TGCCCTTGTCTTCATGGAAAG 58.482 47.619 0.00 0.00 40.11 2.62
348 365 2.363306 TCACACATTGCCCTTGTCTT 57.637 45.000 0.00 0.00 0.00 3.01
352 369 0.108520 GCCATCACACATTGCCCTTG 60.109 55.000 0.00 0.00 0.00 3.61
355 372 1.473258 TAAGCCATCACACATTGCCC 58.527 50.000 0.00 0.00 0.00 5.36
426 444 4.794655 GCCGGAAAACTCAAGCACATTAAA 60.795 41.667 5.05 0.00 0.00 1.52
447 465 4.996434 CATCGCCCCTCCATCGCC 62.996 72.222 0.00 0.00 0.00 5.54
448 466 3.928779 TCATCGCCCCTCCATCGC 61.929 66.667 0.00 0.00 0.00 4.58
449 467 2.029666 GTCATCGCCCCTCCATCG 59.970 66.667 0.00 0.00 0.00 3.84
451 469 3.112205 GCTGTCATCGCCCCTCCAT 62.112 63.158 0.00 0.00 0.00 3.41
452 470 3.785859 GCTGTCATCGCCCCTCCA 61.786 66.667 0.00 0.00 0.00 3.86
454 472 4.899239 CCGCTGTCATCGCCCCTC 62.899 72.222 0.00 0.00 0.00 4.30
477 495 1.061570 GCATTGAAGCGAGCCGAAG 59.938 57.895 0.00 0.00 0.00 3.79
478 496 0.955428 AAGCATTGAAGCGAGCCGAA 60.955 50.000 0.00 0.00 40.15 4.30
479 497 1.375908 AAGCATTGAAGCGAGCCGA 60.376 52.632 0.00 0.00 40.15 5.54
480 498 3.181367 AAGCATTGAAGCGAGCCG 58.819 55.556 0.00 0.00 40.15 5.52
491 509 1.350193 CAGCGACGACTACAAGCATT 58.650 50.000 0.00 0.00 0.00 3.56
492 510 0.458543 CCAGCGACGACTACAAGCAT 60.459 55.000 0.00 0.00 0.00 3.79
493 511 1.080772 CCAGCGACGACTACAAGCA 60.081 57.895 0.00 0.00 0.00 3.91
494 512 0.179134 ATCCAGCGACGACTACAAGC 60.179 55.000 0.00 0.00 0.00 4.01
495 513 1.550065 CATCCAGCGACGACTACAAG 58.450 55.000 0.00 0.00 0.00 3.16
496 514 0.172578 CCATCCAGCGACGACTACAA 59.827 55.000 0.00 0.00 0.00 2.41
497 515 0.963856 ACCATCCAGCGACGACTACA 60.964 55.000 0.00 0.00 0.00 2.74
498 516 0.248539 GACCATCCAGCGACGACTAC 60.249 60.000 0.00 0.00 0.00 2.73
499 517 0.393944 AGACCATCCAGCGACGACTA 60.394 55.000 0.00 0.00 0.00 2.59
500 518 0.393944 TAGACCATCCAGCGACGACT 60.394 55.000 0.00 0.00 0.00 4.18
501 519 0.248539 GTAGACCATCCAGCGACGAC 60.249 60.000 0.00 0.00 0.00 4.34
502 520 0.678684 TGTAGACCATCCAGCGACGA 60.679 55.000 0.00 0.00 0.00 4.20
503 521 0.248661 CTGTAGACCATCCAGCGACG 60.249 60.000 0.00 0.00 0.00 5.12
504 522 1.103803 TCTGTAGACCATCCAGCGAC 58.896 55.000 0.00 0.00 0.00 5.19
505 523 1.957177 GATCTGTAGACCATCCAGCGA 59.043 52.381 0.00 0.00 0.00 4.93
506 524 1.959985 AGATCTGTAGACCATCCAGCG 59.040 52.381 0.00 0.00 0.00 5.18
507 525 4.402829 TCTAGATCTGTAGACCATCCAGC 58.597 47.826 5.18 0.00 0.00 4.85
508 526 6.009589 ACATCTAGATCTGTAGACCATCCAG 58.990 44.000 5.18 0.00 31.75 3.86
509 527 5.958321 ACATCTAGATCTGTAGACCATCCA 58.042 41.667 5.18 0.00 31.75 3.41
510 528 8.588290 ATTACATCTAGATCTGTAGACCATCC 57.412 38.462 5.18 0.00 31.75 3.51
534 552 9.589111 AGTACAACGAACACCAAAAATAAAAAT 57.411 25.926 0.00 0.00 0.00 1.82
535 553 8.861101 CAGTACAACGAACACCAAAAATAAAAA 58.139 29.630 0.00 0.00 0.00 1.94
536 554 7.009357 GCAGTACAACGAACACCAAAAATAAAA 59.991 33.333 0.00 0.00 0.00 1.52
537 555 6.472808 GCAGTACAACGAACACCAAAAATAAA 59.527 34.615 0.00 0.00 0.00 1.40
538 556 5.972382 GCAGTACAACGAACACCAAAAATAA 59.028 36.000 0.00 0.00 0.00 1.40
539 557 5.505985 GGCAGTACAACGAACACCAAAAATA 60.506 40.000 0.00 0.00 0.00 1.40
540 558 4.356289 GCAGTACAACGAACACCAAAAAT 58.644 39.130 0.00 0.00 0.00 1.82
541 559 3.427773 GGCAGTACAACGAACACCAAAAA 60.428 43.478 0.00 0.00 0.00 1.94
542 560 2.097791 GGCAGTACAACGAACACCAAAA 59.902 45.455 0.00 0.00 0.00 2.44
543 561 1.671845 GGCAGTACAACGAACACCAAA 59.328 47.619 0.00 0.00 0.00 3.28
544 562 1.301423 GGCAGTACAACGAACACCAA 58.699 50.000 0.00 0.00 0.00 3.67
545 563 0.178301 TGGCAGTACAACGAACACCA 59.822 50.000 0.00 0.00 0.00 4.17
546 564 1.196808 CATGGCAGTACAACGAACACC 59.803 52.381 0.00 0.00 0.00 4.16
547 565 2.139917 TCATGGCAGTACAACGAACAC 58.860 47.619 0.00 0.00 0.00 3.32
548 566 2.535012 TCATGGCAGTACAACGAACA 57.465 45.000 0.00 0.00 0.00 3.18
549 567 3.435327 TCAATCATGGCAGTACAACGAAC 59.565 43.478 0.00 0.00 0.00 3.95
550 568 3.669536 TCAATCATGGCAGTACAACGAA 58.330 40.909 0.00 0.00 0.00 3.85
551 569 3.326836 TCAATCATGGCAGTACAACGA 57.673 42.857 0.00 0.00 0.00 3.85
552 570 3.684305 TCTTCAATCATGGCAGTACAACG 59.316 43.478 0.00 0.00 0.00 4.10
553 571 5.355071 TCATCTTCAATCATGGCAGTACAAC 59.645 40.000 0.00 0.00 0.00 3.32
554 572 5.499313 TCATCTTCAATCATGGCAGTACAA 58.501 37.500 0.00 0.00 0.00 2.41
555 573 5.101648 TCATCTTCAATCATGGCAGTACA 57.898 39.130 0.00 0.00 0.00 2.90
556 574 6.630444 ATTCATCTTCAATCATGGCAGTAC 57.370 37.500 0.00 0.00 0.00 2.73
557 575 7.738847 TCTATTCATCTTCAATCATGGCAGTA 58.261 34.615 0.00 0.00 0.00 2.74
558 576 6.598503 TCTATTCATCTTCAATCATGGCAGT 58.401 36.000 0.00 0.00 0.00 4.40
559 577 7.689446 ATCTATTCATCTTCAATCATGGCAG 57.311 36.000 0.00 0.00 0.00 4.85
560 578 7.039993 CCAATCTATTCATCTTCAATCATGGCA 60.040 37.037 0.00 0.00 0.00 4.92
561 579 7.176165 TCCAATCTATTCATCTTCAATCATGGC 59.824 37.037 0.00 0.00 0.00 4.40
562 580 8.631480 TCCAATCTATTCATCTTCAATCATGG 57.369 34.615 0.00 0.00 0.00 3.66
564 582 9.863650 ACTTCCAATCTATTCATCTTCAATCAT 57.136 29.630 0.00 0.00 0.00 2.45
565 583 9.690913 AACTTCCAATCTATTCATCTTCAATCA 57.309 29.630 0.00 0.00 0.00 2.57
569 587 9.745018 AGAAAACTTCCAATCTATTCATCTTCA 57.255 29.630 0.00 0.00 0.00 3.02
571 589 8.887717 CGAGAAAACTTCCAATCTATTCATCTT 58.112 33.333 0.00 0.00 0.00 2.40
572 590 8.260818 TCGAGAAAACTTCCAATCTATTCATCT 58.739 33.333 0.00 0.00 0.00 2.90
573 591 8.425577 TCGAGAAAACTTCCAATCTATTCATC 57.574 34.615 0.00 0.00 0.00 2.92
574 592 8.792830 TTCGAGAAAACTTCCAATCTATTCAT 57.207 30.769 0.00 0.00 0.00 2.57
575 593 8.615878 TTTCGAGAAAACTTCCAATCTATTCA 57.384 30.769 0.00 0.00 0.00 2.57
576 594 9.893305 TTTTTCGAGAAAACTTCCAATCTATTC 57.107 29.630 10.18 0.00 39.70 1.75
600 618 6.282930 CAACATTCCACCATCTTGTCTTTTT 58.717 36.000 0.00 0.00 0.00 1.94
603 621 3.256631 GCAACATTCCACCATCTTGTCTT 59.743 43.478 0.00 0.00 0.00 3.01
642 660 4.558538 AAGTAGTTACGTCGACACACTT 57.441 40.909 17.16 14.01 0.00 3.16
654 672 7.360353 GGTGTCGTTCCCAAATAAAGTAGTTAC 60.360 40.741 0.00 0.00 0.00 2.50
657 675 4.999311 GGTGTCGTTCCCAAATAAAGTAGT 59.001 41.667 0.00 0.00 0.00 2.73
692 710 9.650539 CTAGCATATGCACTATCTGATTTTAGT 57.349 33.333 28.62 5.03 45.16 2.24
693 711 8.602328 GCTAGCATATGCACTATCTGATTTTAG 58.398 37.037 28.62 16.47 45.16 1.85
694 712 7.550551 GGCTAGCATATGCACTATCTGATTTTA 59.449 37.037 28.62 7.29 45.16 1.52
695 713 6.373774 GGCTAGCATATGCACTATCTGATTTT 59.626 38.462 28.62 6.48 45.16 1.82
696 714 5.879223 GGCTAGCATATGCACTATCTGATTT 59.121 40.000 28.62 6.68 45.16 2.17
707 725 5.748402 AGCTATAATTGGCTAGCATATGCA 58.252 37.500 28.62 13.96 42.25 3.96
819 2004 1.273327 GAGGCCTGTTTTGGTTGATGG 59.727 52.381 12.00 0.00 0.00 3.51
889 2098 0.314302 CGTATCTTAGACCAGGCCGG 59.686 60.000 11.48 11.48 42.50 6.13
1577 2787 0.623723 TTCCACATAGCCCAACCTCC 59.376 55.000 0.00 0.00 0.00 4.30
1606 2816 8.007405 ACCTAATAAGCAACAAATCCCAATAC 57.993 34.615 0.00 0.00 0.00 1.89
1798 3009 0.040067 GTAAGCAAGCACACTGGCAC 60.040 55.000 0.00 0.00 46.28 5.01
1837 3048 2.576832 CCACTGCAAAAGGCCAGGG 61.577 63.158 5.01 0.00 43.89 4.45
1863 3074 1.228154 AACGTCCAGGCCAAACTCC 60.228 57.895 5.01 0.00 0.00 3.85
1915 3126 5.695851 TCCAATTCAGAAAGCAGAGAAAC 57.304 39.130 0.00 0.00 0.00 2.78
1916 3127 5.771666 ACATCCAATTCAGAAAGCAGAGAAA 59.228 36.000 0.00 0.00 0.00 2.52
1964 3179 9.352784 TGACTGTTCTTGAACAAAACATTTAAG 57.647 29.630 15.70 4.65 32.85 1.85
1989 3204 3.509967 GGTCAAAACTACATTCCCCCTTG 59.490 47.826 0.00 0.00 0.00 3.61
2024 3239 6.662755 TGTGCCCAGATAATCAGTATCTTTT 58.337 36.000 0.00 0.00 45.71 2.27
2060 3275 7.922811 TGTACTAGTTCTGATGTCAATGCTATG 59.077 37.037 0.00 0.00 0.00 2.23
2069 3286 9.646427 AAAAAGAGATGTACTAGTTCTGATGTC 57.354 33.333 0.00 0.00 0.00 3.06
2140 3357 8.508062 AGCAATGTCATTTACGTACAACATTAA 58.492 29.630 16.98 1.28 36.02 1.40
2230 3447 9.683069 CAAATTAATATTGAGTAGTTCATGGGC 57.317 33.333 0.00 0.00 35.27 5.36
2300 3517 6.013379 TGAATGTTCATTATAGGGGCTAGGAG 60.013 42.308 0.00 0.00 31.01 3.69
2351 3568 8.536175 ACAAAGGAAAATTTCTTGACAAAGGTA 58.464 29.630 12.64 0.00 33.90 3.08
2353 3570 7.848223 ACAAAGGAAAATTTCTTGACAAAGG 57.152 32.000 12.64 0.00 33.90 3.11
2401 3628 4.065088 GCTGCCTTGGATATGACGAATAA 58.935 43.478 0.00 0.00 0.00 1.40
2449 3676 3.739209 GCCAATTCAAAAGGAGGCATAGC 60.739 47.826 0.00 0.00 41.63 2.97
2577 3804 6.993079 ACATACTGTGATGTAAGTGAAGACA 58.007 36.000 0.00 0.00 38.29 3.41
2629 3856 3.792401 TGAACTAACATCCGTGCTATGG 58.208 45.455 0.00 0.00 0.00 2.74
2659 3886 9.201989 AGAAGAGGATATATTAATGATACGCCA 57.798 33.333 0.00 0.00 0.00 5.69
2700 3927 8.788325 AGAAAACACTATTGGTAGAATGGTAC 57.212 34.615 0.00 0.00 0.00 3.34
2823 4050 9.140286 GTGTATACATACTATGGTGCACTTATG 57.860 37.037 17.98 16.18 34.94 1.90
2958 4186 7.099764 ACACTTAAGGATCAATCAGTAGTGTG 58.900 38.462 7.53 0.00 34.84 3.82
3037 4265 6.126863 AGGAGAGTGGTTGACATAAAATCA 57.873 37.500 0.00 0.00 0.00 2.57
3338 4566 8.043710 CAGTTGAGGTGAGTAATTCCTAGATTT 58.956 37.037 0.00 0.00 0.00 2.17
3464 4700 9.920133 AAATAGATAGTACACAGAGTGCATATG 57.080 33.333 0.00 0.00 36.98 1.78
3690 4932 6.721571 TGCAACCTAGATTTTCTTAACTCG 57.278 37.500 0.00 0.00 0.00 4.18
3723 4965 2.093658 GGGAGCAGGAACGAGATTAACA 60.094 50.000 0.00 0.00 0.00 2.41
3733 4975 1.302832 CACACCTGGGAGCAGGAAC 60.303 63.158 0.00 0.00 45.00 3.62
3778 5020 2.154462 CGTGCAGACAAAGAAGGGATT 58.846 47.619 0.00 0.00 0.00 3.01
3828 5080 0.329261 CAGGCATGAACCTTCTCCCA 59.671 55.000 0.00 0.00 38.26 4.37
3878 5131 2.045524 CCATACTGGAGCATGAGAGGT 58.954 52.381 0.00 0.00 40.96 3.85
3955 5212 1.918293 CTGTGGTGCCCCTCCAGTA 60.918 63.158 0.00 0.00 35.49 2.74
4080 5342 1.145803 GAGTACTTCCGTTGCACCAC 58.854 55.000 0.00 0.00 0.00 4.16
4103 5365 3.199290 TCTGAGGCTACTCTGAGGC 57.801 57.895 9.85 3.51 43.89 4.70
4106 5368 5.510430 TCAAATACTCTGAGGCTACTCTGA 58.490 41.667 9.85 4.62 45.73 3.27
4107 5369 5.843673 TCAAATACTCTGAGGCTACTCTG 57.156 43.478 9.85 0.00 44.29 3.35
4108 5370 7.782644 ACTTATCAAATACTCTGAGGCTACTCT 59.217 37.037 9.85 0.00 44.29 3.24
4109 5371 7.947282 ACTTATCAAATACTCTGAGGCTACTC 58.053 38.462 9.85 0.00 44.23 2.59
4110 5372 7.906199 ACTTATCAAATACTCTGAGGCTACT 57.094 36.000 9.85 0.00 0.00 2.57
4111 5373 8.417884 AGAACTTATCAAATACTCTGAGGCTAC 58.582 37.037 9.85 0.00 0.00 3.58
4112 5374 8.540507 AGAACTTATCAAATACTCTGAGGCTA 57.459 34.615 9.85 0.00 0.00 3.93
4234 5496 2.028190 CGATCCAGGTAGCAGCGG 59.972 66.667 0.00 0.00 0.00 5.52
4311 5694 4.498894 TGCAATCCTTCTGTCATCATCT 57.501 40.909 0.00 0.00 0.00 2.90
4338 5721 9.128404 CATAAACATTATATCCTCATGATGGGG 57.872 37.037 4.55 4.55 40.17 4.96
4339 5722 9.910267 TCATAAACATTATATCCTCATGATGGG 57.090 33.333 0.00 0.00 34.76 4.00
4430 5815 9.528489 ACCCTCTTTTAATTAGCAAAGTATGAA 57.472 29.630 8.72 0.00 32.67 2.57
4524 5909 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
4525 5910 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4526 5911 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4527 5912 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4528 5913 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4529 5914 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
4530 5915 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
4531 5916 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
4532 5917 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
4533 5918 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
4534 5919 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
4535 5920 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
4536 5921 6.015519 CACAAAGTTGGGTCATCTATTTTGGA 60.016 38.462 0.00 0.00 0.00 3.53
4537 5922 6.158598 CACAAAGTTGGGTCATCTATTTTGG 58.841 40.000 0.00 0.00 0.00 3.28
4538 5923 5.634859 GCACAAAGTTGGGTCATCTATTTTG 59.365 40.000 0.00 0.00 33.05 2.44
4539 5924 5.539955 AGCACAAAGTTGGGTCATCTATTTT 59.460 36.000 0.00 0.00 33.05 1.82
4540 5925 5.079643 AGCACAAAGTTGGGTCATCTATTT 58.920 37.500 0.00 0.00 33.05 1.40
4541 5926 4.666512 AGCACAAAGTTGGGTCATCTATT 58.333 39.130 0.00 0.00 33.05 1.73
4542 5927 4.307032 AGCACAAAGTTGGGTCATCTAT 57.693 40.909 0.00 0.00 33.05 1.98
4543 5928 3.788227 AGCACAAAGTTGGGTCATCTA 57.212 42.857 0.00 0.00 33.05 1.98
4544 5929 2.664402 AGCACAAAGTTGGGTCATCT 57.336 45.000 0.00 0.00 33.05 2.90
4545 5930 3.821033 AGTTAGCACAAAGTTGGGTCATC 59.179 43.478 0.00 0.00 33.05 2.92
4546 5931 3.832527 AGTTAGCACAAAGTTGGGTCAT 58.167 40.909 0.00 0.00 33.05 3.06
4547 5932 3.290948 AGTTAGCACAAAGTTGGGTCA 57.709 42.857 0.00 0.00 33.05 4.02
4548 5933 4.649088 AAAGTTAGCACAAAGTTGGGTC 57.351 40.909 0.00 0.00 33.05 4.46
4549 5934 5.198207 ACTAAAGTTAGCACAAAGTTGGGT 58.802 37.500 0.00 0.00 34.09 4.51
4550 5935 5.767816 ACTAAAGTTAGCACAAAGTTGGG 57.232 39.130 0.00 0.00 34.09 4.12
4551 5936 7.254227 TGTACTAAAGTTAGCACAAAGTTGG 57.746 36.000 2.29 0.00 34.88 3.77
4556 5941 8.185505 CCAACTTTGTACTAAAGTTAGCACAAA 58.814 33.333 23.56 20.59 46.64 2.83
4557 5942 7.201750 CCCAACTTTGTACTAAAGTTAGCACAA 60.202 37.037 23.56 11.25 45.57 3.33
4558 5943 6.261381 CCCAACTTTGTACTAAAGTTAGCACA 59.739 38.462 23.56 0.82 45.57 4.57
4559 5944 6.261603 ACCCAACTTTGTACTAAAGTTAGCAC 59.738 38.462 23.56 0.00 45.57 4.40
4560 5945 6.358991 ACCCAACTTTGTACTAAAGTTAGCA 58.641 36.000 23.56 0.00 45.57 3.49
4561 5946 6.484308 TGACCCAACTTTGTACTAAAGTTAGC 59.516 38.462 23.56 16.95 45.57 3.09
4562 5947 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
4563 5948 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
4565 5950 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
4566 5951 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
4567 5952 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
4568 5953 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
4569 5954 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
4570 5955 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
4571 5956 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
4572 5957 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
4573 5958 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
4574 5959 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
4575 5960 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
4576 5961 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
4577 5962 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
4578 5963 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
4579 5964 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
4580 5965 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
4581 5966 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
4582 5967 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
4583 5968 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4584 5969 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4585 5970 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4586 5971 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4587 5972 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4588 5973 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4589 5974 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
4590 5975 4.586306 ATTACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
4591 5976 4.778958 TCTATTACTCCCTCCGTTCCAAAA 59.221 41.667 0.00 0.00 0.00 2.44
4592 5977 4.161001 GTCTATTACTCCCTCCGTTCCAAA 59.839 45.833 0.00 0.00 0.00 3.28
4593 5978 3.703052 GTCTATTACTCCCTCCGTTCCAA 59.297 47.826 0.00 0.00 0.00 3.53
4594 5979 3.294214 GTCTATTACTCCCTCCGTTCCA 58.706 50.000 0.00 0.00 0.00 3.53
4595 5980 3.067883 GTGTCTATTACTCCCTCCGTTCC 59.932 52.174 0.00 0.00 0.00 3.62
4596 5981 3.952967 AGTGTCTATTACTCCCTCCGTTC 59.047 47.826 0.00 0.00 0.00 3.95
4597 5982 3.700038 CAGTGTCTATTACTCCCTCCGTT 59.300 47.826 0.00 0.00 0.00 4.44
4598 5983 3.288964 CAGTGTCTATTACTCCCTCCGT 58.711 50.000 0.00 0.00 0.00 4.69
4599 5984 2.034812 GCAGTGTCTATTACTCCCTCCG 59.965 54.545 0.00 0.00 0.00 4.63
4600 5985 2.365941 GGCAGTGTCTATTACTCCCTCC 59.634 54.545 0.00 0.00 0.00 4.30
4601 5986 3.301274 AGGCAGTGTCTATTACTCCCTC 58.699 50.000 0.00 0.00 0.00 4.30
4602 5987 3.406512 AGGCAGTGTCTATTACTCCCT 57.593 47.619 0.00 0.00 0.00 4.20
4603 5988 6.494146 AGTTATAGGCAGTGTCTATTACTCCC 59.506 42.308 23.98 5.97 35.96 4.30
4604 5989 7.527568 AGTTATAGGCAGTGTCTATTACTCC 57.472 40.000 23.98 9.50 35.96 3.85
4605 5990 9.465985 GAAAGTTATAGGCAGTGTCTATTACTC 57.534 37.037 27.63 17.26 38.55 2.59
4606 5991 8.978472 TGAAAGTTATAGGCAGTGTCTATTACT 58.022 33.333 23.98 23.98 40.33 2.24
4607 5992 9.765795 ATGAAAGTTATAGGCAGTGTCTATTAC 57.234 33.333 21.79 21.31 32.38 1.89
5109 6497 4.460948 TCAAGGTTAATGGTACCGAGAC 57.539 45.455 7.57 3.31 40.69 3.36
5173 6565 3.325135 CCTATGCCCGATTTCTCTAACCT 59.675 47.826 0.00 0.00 0.00 3.50
5178 6570 1.807814 ACCCTATGCCCGATTTCTCT 58.192 50.000 0.00 0.00 0.00 3.10
5211 6603 7.915930 AGAATCAATCCATTCTCTCCGAATAT 58.084 34.615 0.00 0.00 38.53 1.28
5212 6604 7.308450 AGAATCAATCCATTCTCTCCGAATA 57.692 36.000 0.00 0.00 38.53 1.75
5299 6691 5.199982 TGGCAAAATGGGATAAAGGAGTA 57.800 39.130 0.00 0.00 0.00 2.59
5597 6990 5.476599 CACTCAAGTTGGAAAATGGGTATCA 59.523 40.000 2.34 0.00 28.68 2.15
5649 7042 7.914346 GTCTAGAGCTAAAAAGTATCACGCTTA 59.086 37.037 0.00 0.00 0.00 3.09
5840 7234 3.431912 CGATGATCGTCACTGGAAAAACA 59.568 43.478 15.14 0.00 34.72 2.83
6022 7416 0.326238 TAAGAAGGATGACCGGGGCT 60.326 55.000 6.32 0.00 41.83 5.19
6073 7467 2.436646 GGAGTGTGGGGACATGCG 60.437 66.667 0.00 0.00 46.14 4.73
6203 7597 3.385384 CTGAGCAGGGACGAGGCA 61.385 66.667 0.00 0.00 0.00 4.75
6236 7637 4.967036 TGAAGGATAACATGTGTGTGTGA 58.033 39.130 0.00 0.00 38.92 3.58
6262 7666 2.224281 CCCGCTATCTGCTGACCAAATA 60.224 50.000 0.00 0.00 40.11 1.40
6280 7684 0.393077 AAGAGTTGAGACACCACCCG 59.607 55.000 0.00 0.00 0.00 5.28
6281 7685 1.694696 AGAAGAGTTGAGACACCACCC 59.305 52.381 0.00 0.00 0.00 4.61
6291 7695 6.732896 AGTTGAAACCTAGAGAAGAGTTGA 57.267 37.500 0.00 0.00 0.00 3.18
6393 7797 1.404181 CGGAGAACGGAGATGAAGCAA 60.404 52.381 0.00 0.00 39.42 3.91
6511 7915 0.877071 CAGTCTCACACCCATGCAAC 59.123 55.000 0.00 0.00 0.00 4.17
6670 8074 1.383456 AAAGCTGCACCGCAAGAACA 61.383 50.000 1.02 0.00 38.41 3.18
6749 8153 1.153745 CTCGGAACCGCAGAGGAAG 60.154 63.158 8.48 0.00 45.00 3.46
6826 8230 0.035439 AACAGGGTTCACCATAGGCG 60.035 55.000 0.00 0.00 43.89 5.52
6892 8340 1.404449 CGTGCACATACGGGTCCTTAA 60.404 52.381 18.64 0.00 40.22 1.85
7133 8595 0.612732 CCACATGCCCATCAACACCT 60.613 55.000 0.00 0.00 0.00 4.00
7174 8636 1.548719 TCTCGTGATCCACCATTTCGT 59.451 47.619 0.00 0.00 0.00 3.85
7508 9173 1.896220 TGCATTGACTTCGGCTCTTT 58.104 45.000 0.00 0.00 0.00 2.52
7560 9225 1.019673 CTGCATCCCATTCCTGAACG 58.980 55.000 0.00 0.00 0.00 3.95
7571 9236 7.124448 GGGGTATATATAGTATAGCTGCATCCC 59.876 44.444 1.02 0.00 0.00 3.85
7664 9329 2.541588 CGAGCTGAACACCAACCAAAAG 60.542 50.000 0.00 0.00 0.00 2.27
7682 9347 3.543680 AAGATACAACATGGGTCCGAG 57.456 47.619 0.00 0.00 0.00 4.63
7794 9467 3.925379 TGCTCGACACTTGTACATGAAT 58.075 40.909 15.13 2.95 0.00 2.57
7862 9537 7.119116 CAGGTTTATATGCTTGACACTTGTACA 59.881 37.037 0.00 0.00 0.00 2.90
8097 9970 4.493547 CACTAAGCATCTATCTAGGCTGC 58.506 47.826 0.00 0.00 36.58 5.25
8151 10024 2.423538 CCACAAGCAGCAATTAGTACCC 59.576 50.000 0.00 0.00 0.00 3.69
8303 10178 7.664318 TCAGCAAGCAATCACTCATATCAATAT 59.336 33.333 0.00 0.00 0.00 1.28
8319 10194 4.754372 CTGTAGACAATTCAGCAAGCAA 57.246 40.909 0.00 0.00 0.00 3.91
8333 10208 4.882427 TCAGTACACATCTAGGCTGTAGAC 59.118 45.833 0.00 0.00 0.00 2.59
8669 10544 4.515191 GCTGAGTCAACACAGATTACCAAA 59.485 41.667 11.13 0.00 36.82 3.28
8687 10594 4.404691 GGGGGAAACACAGCTGAG 57.595 61.111 23.35 16.23 32.66 3.35
8719 10626 1.955778 CTTCATCCCTGCAAACACACA 59.044 47.619 0.00 0.00 0.00 3.72
8720 10627 1.956477 ACTTCATCCCTGCAAACACAC 59.044 47.619 0.00 0.00 0.00 3.82
8814 10721 2.480416 CGTCTATGACTGAGCAACCTCC 60.480 54.545 0.00 0.00 37.29 4.30
8896 10804 5.277974 CCATCGGTCCAACATAAACATCATC 60.278 44.000 0.00 0.00 0.00 2.92
8915 10823 4.253685 TGAGCTTTTTCTAGGAACCATCG 58.746 43.478 0.00 0.00 0.00 3.84
9051 10959 4.457834 AATGCAGGACGTAGATATAGGC 57.542 45.455 0.00 0.00 0.00 3.93
9171 11079 8.404000 CGTCCTATATTAATTGCCGTATCTAGT 58.596 37.037 0.00 0.00 0.00 2.57
9179 11087 3.617263 GCTCCGTCCTATATTAATTGCCG 59.383 47.826 0.00 0.00 0.00 5.69
9526 11447 2.746277 AACCCATTCCTCGTGCGC 60.746 61.111 0.00 0.00 0.00 6.09
9527 11448 1.079127 AGAACCCATTCCTCGTGCG 60.079 57.895 0.00 0.00 35.18 5.34
9568 11489 5.346011 TGATTCTGTTTCTCGTCATTTCTCG 59.654 40.000 0.00 0.00 0.00 4.04
9569 11490 6.183360 CCTGATTCTGTTTCTCGTCATTTCTC 60.183 42.308 0.00 0.00 0.00 2.87
9570 11491 5.641209 CCTGATTCTGTTTCTCGTCATTTCT 59.359 40.000 0.00 0.00 0.00 2.52
9571 11492 5.163814 CCCTGATTCTGTTTCTCGTCATTTC 60.164 44.000 0.00 0.00 0.00 2.17
9572 11493 4.697352 CCCTGATTCTGTTTCTCGTCATTT 59.303 41.667 0.00 0.00 0.00 2.32
9573 11494 4.256920 CCCTGATTCTGTTTCTCGTCATT 58.743 43.478 0.00 0.00 0.00 2.57
9574 11495 3.866651 CCCTGATTCTGTTTCTCGTCAT 58.133 45.455 0.00 0.00 0.00 3.06
9575 11496 2.612972 GCCCTGATTCTGTTTCTCGTCA 60.613 50.000 0.00 0.00 0.00 4.35
9576 11497 2.003301 GCCCTGATTCTGTTTCTCGTC 58.997 52.381 0.00 0.00 0.00 4.20
9577 11498 1.347707 TGCCCTGATTCTGTTTCTCGT 59.652 47.619 0.00 0.00 0.00 4.18
9632 11553 1.021390 CCTCGTGTCCCAAGCATGTC 61.021 60.000 0.00 0.00 0.00 3.06
9749 11716 0.598065 GCCTTGTTCCGAAACTGCAT 59.402 50.000 0.00 0.00 36.30 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.