Multiple sequence alignment - TraesCS1D01G140100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G140100 chr1D 100.000 4324 0 0 1 4324 192916177 192920500 0.000000e+00 7986.0
1 TraesCS1D01G140100 chr1D 87.870 676 76 5 7 677 81063841 81063167 0.000000e+00 789.0
2 TraesCS1D01G140100 chr1D 82.822 163 25 3 3886 4045 26414939 26415101 4.510000e-30 143.0
3 TraesCS1D01G140100 chr1D 90.291 103 7 2 4048 4149 193083022 193083122 9.760000e-27 132.0
4 TraesCS1D01G140100 chr1D 80.392 153 25 5 4151 4301 426920958 426920809 1.270000e-20 111.0
5 TraesCS1D01G140100 chr1D 89.091 55 5 1 4245 4299 420084234 420084181 2.790000e-07 67.6
6 TraesCS1D01G140100 chr1A 92.773 3390 103 47 700 4045 238999681 239002972 0.000000e+00 4772.0
7 TraesCS1D01G140100 chr1A 93.923 181 8 3 4147 4324 239002938 239003118 1.980000e-68 270.0
8 TraesCS1D01G140100 chr1A 94.118 51 3 0 4249 4299 516691897 516691847 1.290000e-10 78.7
9 TraesCS1D01G140100 chr1B 94.380 3114 97 23 746 3805 267877041 267880130 0.000000e+00 4710.0
10 TraesCS1D01G140100 chr1B 94.615 260 8 4 3788 4045 267880152 267880407 8.710000e-107 398.0
11 TraesCS1D01G140100 chr1B 93.820 178 11 0 4147 4324 267880373 267880550 7.130000e-68 268.0
12 TraesCS1D01G140100 chr1B 90.588 170 16 0 3082 3251 22889413 22889244 4.350000e-55 226.0
13 TraesCS1D01G140100 chr4D 92.422 607 43 2 1 607 476861501 476862104 0.000000e+00 863.0
14 TraesCS1D01G140100 chr4D 88.416 682 69 5 7 678 53526133 53525452 0.000000e+00 813.0
15 TraesCS1D01G140100 chr4D 83.333 174 25 3 3877 4046 449742769 449742596 1.610000e-34 158.0
16 TraesCS1D01G140100 chr3D 89.676 678 69 1 1 677 520860437 520861114 0.000000e+00 863.0
17 TraesCS1D01G140100 chr5D 90.184 652 63 1 7 657 358212458 358211807 0.000000e+00 848.0
18 TraesCS1D01G140100 chr5D 88.253 681 70 7 1 677 515238470 515237796 0.000000e+00 806.0
19 TraesCS1D01G140100 chr7D 91.115 619 51 4 68 683 494674756 494674139 0.000000e+00 835.0
20 TraesCS1D01G140100 chr7D 89.037 675 69 4 8 678 638408949 638409622 0.000000e+00 832.0
21 TraesCS1D01G140100 chr7D 82.857 175 25 4 3876 4045 87234457 87234631 7.490000e-33 152.0
22 TraesCS1D01G140100 chr7D 78.808 151 22 8 4151 4299 563764589 563764731 4.600000e-15 93.5
23 TraesCS1D01G140100 chr2D 88.759 685 69 4 1 677 180335791 180336475 0.000000e+00 832.0
24 TraesCS1D01G140100 chr6D 84.393 173 24 3 3877 4046 356800634 356800462 2.670000e-37 167.0
25 TraesCS1D01G140100 chr6D 80.986 142 13 6 4151 4292 97571120 97571247 2.750000e-17 100.0
26 TraesCS1D01G140100 chr6D 83.099 71 7 4 4229 4294 86650956 86651026 4.670000e-05 60.2
27 TraesCS1D01G140100 chr2B 82.778 180 22 5 3876 4046 18316181 18316002 7.490000e-33 152.0
28 TraesCS1D01G140100 chr3B 82.514 183 20 7 3876 4046 112433968 112434150 2.690000e-32 150.0
29 TraesCS1D01G140100 chr4A 81.818 176 25 5 3876 4044 706640248 706640423 1.620000e-29 141.0
30 TraesCS1D01G140100 chr5A 82.353 153 21 4 4147 4299 536862049 536861903 1.260000e-25 128.0
31 TraesCS1D01G140100 chr4B 86.076 79 9 2 4147 4225 127690868 127690792 2.770000e-12 84.2
32 TraesCS1D01G140100 chrUn 92.857 42 3 0 4258 4299 43579596 43579637 1.300000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G140100 chr1D 192916177 192920500 4323 False 7986 7986 100.000000 1 4324 1 chr1D.!!$F2 4323
1 TraesCS1D01G140100 chr1D 81063167 81063841 674 True 789 789 87.870000 7 677 1 chr1D.!!$R1 670
2 TraesCS1D01G140100 chr1A 238999681 239003118 3437 False 2521 4772 93.348000 700 4324 2 chr1A.!!$F1 3624
3 TraesCS1D01G140100 chr1B 267877041 267880550 3509 False 1792 4710 94.271667 746 4324 3 chr1B.!!$F1 3578
4 TraesCS1D01G140100 chr4D 476861501 476862104 603 False 863 863 92.422000 1 607 1 chr4D.!!$F1 606
5 TraesCS1D01G140100 chr4D 53525452 53526133 681 True 813 813 88.416000 7 678 1 chr4D.!!$R1 671
6 TraesCS1D01G140100 chr3D 520860437 520861114 677 False 863 863 89.676000 1 677 1 chr3D.!!$F1 676
7 TraesCS1D01G140100 chr5D 358211807 358212458 651 True 848 848 90.184000 7 657 1 chr5D.!!$R1 650
8 TraesCS1D01G140100 chr5D 515237796 515238470 674 True 806 806 88.253000 1 677 1 chr5D.!!$R2 676
9 TraesCS1D01G140100 chr7D 494674139 494674756 617 True 835 835 91.115000 68 683 1 chr7D.!!$R1 615
10 TraesCS1D01G140100 chr7D 638408949 638409622 673 False 832 832 89.037000 8 678 1 chr7D.!!$F3 670
11 TraesCS1D01G140100 chr2D 180335791 180336475 684 False 832 832 88.759000 1 677 1 chr2D.!!$F1 676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
811 835 0.037975 GTCCACCGTCGGTTGTACAT 60.038 55.000 15.97 0.0 31.02 2.29 F
868 892 0.893270 CCGGATGTGGGAAAACTGCA 60.893 55.000 0.00 0.0 0.00 4.41 F
2286 2335 1.667724 CATCCAGAAAGCATCGACCAC 59.332 52.381 0.00 0.0 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 1986 0.966920 TATTTCCGATCGGAGGGAGC 59.033 55.000 33.67 0.0 46.06 4.70 R
2599 2671 1.522580 GACAGAGCGAATCCTGGGC 60.523 63.158 0.00 0.0 34.85 5.36 R
4069 4217 0.322277 CAGTTGCTGGGTGATGAGCT 60.322 55.000 0.00 0.0 36.11 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 1.513586 CTTACGACGGCGGAGACAC 60.514 63.158 18.49 0.00 43.17 3.67
160 161 1.746615 GCTCTTCGGCTTGCCATCA 60.747 57.895 12.45 0.00 0.00 3.07
189 190 2.584608 CGGGAGGCGTTGGAGAAT 59.415 61.111 0.00 0.00 0.00 2.40
202 203 1.153549 GAGAATGCGAAGGAGGCGT 60.154 57.895 0.00 0.00 0.00 5.68
282 283 1.993956 CCATCATCGACTCCTCCTCT 58.006 55.000 0.00 0.00 0.00 3.69
292 302 0.673956 CTCCTCCTCTGACGACGACA 60.674 60.000 0.00 0.00 0.00 4.35
349 362 1.638388 CGACGACGGGTACAGCTACA 61.638 60.000 0.00 0.00 35.72 2.74
465 479 5.888724 TGTGTGAACTTTGGTGGATCTTTTA 59.111 36.000 0.00 0.00 0.00 1.52
472 486 6.004574 ACTTTGGTGGATCTTTTAGAGAACC 58.995 40.000 0.00 0.00 45.18 3.62
678 698 2.567615 AGTCCGGTTGTAGATGCTCTTT 59.432 45.455 0.00 0.00 0.00 2.52
679 699 3.767673 AGTCCGGTTGTAGATGCTCTTTA 59.232 43.478 0.00 0.00 0.00 1.85
680 700 4.406003 AGTCCGGTTGTAGATGCTCTTTAT 59.594 41.667 0.00 0.00 0.00 1.40
681 701 4.508124 GTCCGGTTGTAGATGCTCTTTATG 59.492 45.833 0.00 0.00 0.00 1.90
682 702 4.161565 TCCGGTTGTAGATGCTCTTTATGT 59.838 41.667 0.00 0.00 0.00 2.29
683 703 4.271049 CCGGTTGTAGATGCTCTTTATGTG 59.729 45.833 0.00 0.00 0.00 3.21
684 704 5.109210 CGGTTGTAGATGCTCTTTATGTGA 58.891 41.667 0.00 0.00 0.00 3.58
685 705 5.755375 CGGTTGTAGATGCTCTTTATGTGAT 59.245 40.000 0.00 0.00 0.00 3.06
686 706 6.258727 CGGTTGTAGATGCTCTTTATGTGATT 59.741 38.462 0.00 0.00 0.00 2.57
687 707 7.201644 CGGTTGTAGATGCTCTTTATGTGATTT 60.202 37.037 0.00 0.00 0.00 2.17
688 708 9.109393 GGTTGTAGATGCTCTTTATGTGATTTA 57.891 33.333 0.00 0.00 0.00 1.40
691 711 9.890629 TGTAGATGCTCTTTATGTGATTTAAGT 57.109 29.630 0.00 0.00 0.00 2.24
694 714 8.887717 AGATGCTCTTTATGTGATTTAAGTCAC 58.112 33.333 20.80 20.80 46.75 3.67
695 715 8.798859 ATGCTCTTTATGTGATTTAAGTCACT 57.201 30.769 25.72 16.22 46.70 3.41
696 716 8.032952 TGCTCTTTATGTGATTTAAGTCACTG 57.967 34.615 25.72 13.81 46.70 3.66
697 717 7.119699 TGCTCTTTATGTGATTTAAGTCACTGG 59.880 37.037 25.72 14.02 46.70 4.00
698 718 7.377766 TCTTTATGTGATTTAAGTCACTGGC 57.622 36.000 25.72 6.12 46.70 4.85
714 734 3.189568 GGCAGACATGTGGCCAATA 57.810 52.632 25.75 0.00 46.92 1.90
721 741 4.572389 CAGACATGTGGCCAATAGTAAGAC 59.428 45.833 7.24 0.00 0.00 3.01
735 759 7.310113 CCAATAGTAAGACAGGAGAGAGTTTGT 60.310 40.741 0.00 0.00 0.00 2.83
739 763 5.476091 AAGACAGGAGAGAGTTTGTAAGG 57.524 43.478 0.00 0.00 0.00 2.69
743 767 4.654262 ACAGGAGAGAGTTTGTAAGGTGAA 59.346 41.667 0.00 0.00 0.00 3.18
744 768 5.221541 ACAGGAGAGAGTTTGTAAGGTGAAG 60.222 44.000 0.00 0.00 0.00 3.02
751 775 7.775561 AGAGAGTTTGTAAGGTGAAGAATTTGT 59.224 33.333 0.00 0.00 0.00 2.83
775 799 3.626028 AATGTTCAAACTCGAGGTTGC 57.374 42.857 33.56 22.58 38.29 4.17
807 831 0.107557 AAAAGTCCACCGTCGGTTGT 60.108 50.000 15.97 0.00 31.02 3.32
810 834 1.108727 AGTCCACCGTCGGTTGTACA 61.109 55.000 15.97 0.00 31.02 2.90
811 835 0.037975 GTCCACCGTCGGTTGTACAT 60.038 55.000 15.97 0.00 31.02 2.29
822 846 5.357257 GTCGGTTGTACATTAGATGGTCAT 58.643 41.667 0.00 0.00 33.60 3.06
830 854 8.902540 TGTACATTAGATGGTCATGATAAACC 57.097 34.615 0.00 0.00 36.03 3.27
850 874 3.703127 GGACGTCCCACCTCCACC 61.703 72.222 24.75 0.00 34.14 4.61
854 878 2.687566 GTCCCACCTCCACCGGAT 60.688 66.667 9.46 0.00 0.00 4.18
857 881 2.268920 CCACCTCCACCGGATGTG 59.731 66.667 9.46 10.48 44.27 3.21
868 892 0.893270 CCGGATGTGGGAAAACTGCA 60.893 55.000 0.00 0.00 0.00 4.41
1140 1164 2.869636 GCCTCAGATGATCCCGCTAAAG 60.870 54.545 0.00 0.00 0.00 1.85
1838 1862 5.654603 TGGTAAGCTGATCGTTCTTCTAA 57.345 39.130 0.00 0.00 0.00 2.10
1844 1868 7.475771 AAGCTGATCGTTCTTCTAATTCATC 57.524 36.000 0.00 0.00 0.00 2.92
1855 1879 9.308318 GTTCTTCTAATTCATCTCTCTGTTACC 57.692 37.037 0.00 0.00 0.00 2.85
1862 1886 2.751166 TCTCTCTGTTACCTTGCTGC 57.249 50.000 0.00 0.00 0.00 5.25
2006 2030 6.425417 ACGTTTTGTGGTTTCAGTTCAAATTT 59.575 30.769 0.00 0.00 0.00 1.82
2007 2031 6.735957 CGTTTTGTGGTTTCAGTTCAAATTTG 59.264 34.615 12.15 12.15 0.00 2.32
2008 2032 7.359598 CGTTTTGTGGTTTCAGTTCAAATTTGA 60.360 33.333 16.91 16.91 34.92 2.69
2009 2033 7.593875 TTTGTGGTTTCAGTTCAAATTTGAG 57.406 32.000 19.64 9.84 38.61 3.02
2010 2034 6.279513 TGTGGTTTCAGTTCAAATTTGAGT 57.720 33.333 19.64 9.70 38.61 3.41
2011 2035 7.397892 TGTGGTTTCAGTTCAAATTTGAGTA 57.602 32.000 19.64 4.78 38.61 2.59
2012 2036 7.479980 TGTGGTTTCAGTTCAAATTTGAGTAG 58.520 34.615 19.64 13.43 38.61 2.57
2013 2037 7.338196 TGTGGTTTCAGTTCAAATTTGAGTAGA 59.662 33.333 19.64 15.23 38.61 2.59
2014 2038 8.188139 GTGGTTTCAGTTCAAATTTGAGTAGAA 58.812 33.333 19.64 19.23 38.61 2.10
2015 2039 8.188139 TGGTTTCAGTTCAAATTTGAGTAGAAC 58.812 33.333 19.64 18.79 38.61 3.01
2016 2040 8.188139 GGTTTCAGTTCAAATTTGAGTAGAACA 58.812 33.333 19.64 12.18 40.63 3.18
2017 2041 9.010366 GTTTCAGTTCAAATTTGAGTAGAACAC 57.990 33.333 19.64 13.46 40.63 3.32
2056 2091 3.626977 TGTTTGACAATTCATGTGCGAC 58.373 40.909 0.00 0.00 44.12 5.19
2060 2095 1.992667 GACAATTCATGTGCGACGAGA 59.007 47.619 0.00 0.00 44.12 4.04
2061 2096 2.604914 GACAATTCATGTGCGACGAGAT 59.395 45.455 0.00 0.00 44.12 2.75
2063 2098 3.062639 ACAATTCATGTGCGACGAGATTC 59.937 43.478 0.00 0.00 41.93 2.52
2064 2099 2.654749 TTCATGTGCGACGAGATTCT 57.345 45.000 0.00 0.00 0.00 2.40
2176 2224 3.456280 GTGTTCATTTCCTGCAAAAGCA 58.544 40.909 0.00 0.00 0.00 3.91
2208 2257 8.687824 AACAATTCTGCTTAATTACGAAATGG 57.312 30.769 0.00 0.00 0.00 3.16
2227 2276 5.999205 ATGGACCTAACATGCAAATCAAA 57.001 34.783 0.00 0.00 0.00 2.69
2286 2335 1.667724 CATCCAGAAAGCATCGACCAC 59.332 52.381 0.00 0.00 0.00 4.16
2514 2574 3.071786 CTGTATGCAGTCGGTGTAGAG 57.928 52.381 2.12 0.00 37.92 2.43
2594 2666 3.678072 CCGACGACTATGAGAAGCAAAAA 59.322 43.478 0.00 0.00 0.00 1.94
2668 2740 1.087202 TTACATCGCACGCATCACCC 61.087 55.000 0.00 0.00 0.00 4.61
2761 2833 1.026182 TGAATGTTAGCTGCTGGCCG 61.026 55.000 13.43 0.00 43.05 6.13
2764 2836 3.804193 GTTAGCTGCTGGCCGCAC 61.804 66.667 16.62 13.50 45.47 5.34
2914 3013 4.401022 ACGTATGGTATGGAGGACGAATA 58.599 43.478 0.00 0.00 34.54 1.75
2944 3043 5.104735 ACTCTTTGGAGACATTGGATCCTAC 60.105 44.000 14.23 0.00 41.86 3.18
3165 3265 4.382577 GGGTGGCAAACAAAAGAAGAAAGA 60.383 41.667 0.00 0.00 0.00 2.52
3238 3338 6.378582 TCATTGAAAACTAGCGGATTGAAAC 58.621 36.000 0.00 0.00 0.00 2.78
3517 3620 8.540507 AAATATAGTCTCAAGGCTCTCAACTA 57.459 34.615 0.00 0.00 0.00 2.24
3593 3696 6.601613 AGTTCTTTTGATTGTGTGGTACAGAA 59.398 34.615 0.00 0.00 41.80 3.02
3594 3697 6.371809 TCTTTTGATTGTGTGGTACAGAAC 57.628 37.500 0.00 0.00 41.80 3.01
3595 3698 6.119536 TCTTTTGATTGTGTGGTACAGAACT 58.880 36.000 0.00 0.00 41.80 3.01
3596 3699 7.276658 TCTTTTGATTGTGTGGTACAGAACTA 58.723 34.615 0.00 0.00 41.80 2.24
3597 3700 6.854496 TTTGATTGTGTGGTACAGAACTAC 57.146 37.500 0.00 0.00 41.80 2.73
3598 3701 5.538849 TGATTGTGTGGTACAGAACTACA 57.461 39.130 0.00 0.00 46.22 2.74
3661 3764 3.816523 TGGTAAACGATTTTGGTGGTCTC 59.183 43.478 0.00 0.00 0.00 3.36
3721 3824 3.322828 AGGTAGAAAGACAACGCCAACTA 59.677 43.478 0.00 0.00 0.00 2.24
3733 3836 8.760569 AGACAACGCCAACTAAAATTTAAATTG 58.239 29.630 14.04 4.89 0.00 2.32
3916 4061 7.171167 TGCAAAATTCATCACGAAATCACATTT 59.829 29.630 0.00 0.00 37.12 2.32
3970 4118 8.149647 TGCTCTGAAAATGGTATTTTCAAACAT 58.850 29.630 22.54 0.00 44.67 2.71
4024 4172 3.366273 CCACTTCCACCAATGTGATTTCG 60.366 47.826 0.00 0.00 45.76 3.46
4025 4173 3.253188 CACTTCCACCAATGTGATTTCGT 59.747 43.478 0.00 0.00 45.76 3.85
4026 4174 3.253188 ACTTCCACCAATGTGATTTCGTG 59.747 43.478 0.00 0.00 45.76 4.35
4027 4175 3.133141 TCCACCAATGTGATTTCGTGA 57.867 42.857 0.00 0.00 45.76 4.35
4028 4176 3.684908 TCCACCAATGTGATTTCGTGAT 58.315 40.909 0.00 0.00 45.76 3.06
4029 4177 3.439825 TCCACCAATGTGATTTCGTGATG 59.560 43.478 0.00 0.00 45.76 3.07
4030 4178 3.439825 CCACCAATGTGATTTCGTGATGA 59.560 43.478 0.00 0.00 45.76 2.92
4031 4179 4.082841 CCACCAATGTGATTTCGTGATGAA 60.083 41.667 0.00 0.00 45.76 2.57
4032 4180 5.393352 CCACCAATGTGATTTCGTGATGAAT 60.393 40.000 0.00 0.00 45.76 2.57
4033 4181 5.740569 CACCAATGTGATTTCGTGATGAATC 59.259 40.000 0.00 0.00 45.76 2.52
4034 4182 5.649395 ACCAATGTGATTTCGTGATGAATCT 59.351 36.000 0.00 0.00 36.22 2.40
4035 4183 6.151648 ACCAATGTGATTTCGTGATGAATCTT 59.848 34.615 0.00 0.00 36.22 2.40
4036 4184 7.031372 CCAATGTGATTTCGTGATGAATCTTT 58.969 34.615 0.00 0.00 36.22 2.52
4037 4185 7.008901 CCAATGTGATTTCGTGATGAATCTTTG 59.991 37.037 0.00 0.00 36.22 2.77
4038 4186 5.393124 TGTGATTTCGTGATGAATCTTTGC 58.607 37.500 0.00 0.00 36.22 3.68
4039 4187 5.048852 TGTGATTTCGTGATGAATCTTTGCA 60.049 36.000 0.00 0.00 36.22 4.08
4040 4188 6.032094 GTGATTTCGTGATGAATCTTTGCAT 58.968 36.000 0.00 0.00 36.22 3.96
4041 4189 6.020916 GTGATTTCGTGATGAATCTTTGCATG 60.021 38.462 0.00 0.00 36.22 4.06
4042 4190 3.409851 TCGTGATGAATCTTTGCATGC 57.590 42.857 11.82 11.82 0.00 4.06
4043 4191 2.748532 TCGTGATGAATCTTTGCATGCA 59.251 40.909 18.46 18.46 0.00 3.96
4044 4192 2.850060 CGTGATGAATCTTTGCATGCAC 59.150 45.455 22.58 8.45 0.00 4.57
4045 4193 3.671164 CGTGATGAATCTTTGCATGCACA 60.671 43.478 22.58 14.03 0.00 4.57
4046 4194 4.430007 GTGATGAATCTTTGCATGCACAT 58.570 39.130 22.58 18.91 0.00 3.21
4047 4195 4.267690 GTGATGAATCTTTGCATGCACATG 59.732 41.667 22.58 13.39 41.60 3.21
4056 4204 3.713936 CATGCACATGCTGGTCTTG 57.286 52.632 5.31 0.00 42.66 3.02
4057 4205 0.457853 CATGCACATGCTGGTCTTGC 60.458 55.000 5.31 0.00 42.66 4.01
4058 4206 0.611062 ATGCACATGCTGGTCTTGCT 60.611 50.000 5.31 0.00 42.66 3.91
4059 4207 1.239296 TGCACATGCTGGTCTTGCTC 61.239 55.000 5.31 0.00 42.66 4.26
4060 4208 1.239296 GCACATGCTGGTCTTGCTCA 61.239 55.000 0.00 0.00 38.21 4.26
4061 4209 1.241165 CACATGCTGGTCTTGCTCAA 58.759 50.000 0.00 0.00 0.00 3.02
4062 4210 1.199327 CACATGCTGGTCTTGCTCAAG 59.801 52.381 3.32 3.32 39.71 3.02
4063 4211 0.809385 CATGCTGGTCTTGCTCAAGG 59.191 55.000 9.48 0.00 38.88 3.61
4064 4212 0.964358 ATGCTGGTCTTGCTCAAGGC 60.964 55.000 9.48 7.66 42.04 4.35
4076 4224 3.622627 GCTCAAGGCAAATAGCTCATC 57.377 47.619 0.00 0.00 44.79 2.92
4077 4225 2.947652 GCTCAAGGCAAATAGCTCATCA 59.052 45.455 0.00 0.00 44.79 3.07
4078 4226 3.243002 GCTCAAGGCAAATAGCTCATCAC 60.243 47.826 0.00 0.00 44.79 3.06
4079 4227 3.282021 TCAAGGCAAATAGCTCATCACC 58.718 45.455 0.00 0.00 44.79 4.02
4080 4228 2.355010 AGGCAAATAGCTCATCACCC 57.645 50.000 0.00 0.00 44.79 4.61
4081 4229 1.565759 AGGCAAATAGCTCATCACCCA 59.434 47.619 0.00 0.00 44.79 4.51
4082 4230 1.952296 GGCAAATAGCTCATCACCCAG 59.048 52.381 0.00 0.00 44.79 4.45
4083 4231 1.336125 GCAAATAGCTCATCACCCAGC 59.664 52.381 0.00 0.00 41.15 4.85
4084 4232 2.646930 CAAATAGCTCATCACCCAGCA 58.353 47.619 0.00 0.00 38.18 4.41
4085 4233 3.018856 CAAATAGCTCATCACCCAGCAA 58.981 45.455 0.00 0.00 38.18 3.91
4086 4234 2.338577 ATAGCTCATCACCCAGCAAC 57.661 50.000 0.00 0.00 38.18 4.17
4087 4235 1.279496 TAGCTCATCACCCAGCAACT 58.721 50.000 0.00 0.00 38.18 3.16
4088 4236 0.322277 AGCTCATCACCCAGCAACTG 60.322 55.000 0.00 0.00 38.18 3.16
4117 4265 6.648725 GCCCATTGCGTATATAGTTAGAAG 57.351 41.667 0.00 0.00 0.00 2.85
4118 4266 6.395629 GCCCATTGCGTATATAGTTAGAAGA 58.604 40.000 0.00 0.00 0.00 2.87
4119 4267 6.872020 GCCCATTGCGTATATAGTTAGAAGAA 59.128 38.462 0.00 0.00 0.00 2.52
4120 4268 7.063544 GCCCATTGCGTATATAGTTAGAAGAAG 59.936 40.741 0.00 0.00 0.00 2.85
4121 4269 8.304596 CCCATTGCGTATATAGTTAGAAGAAGA 58.695 37.037 0.00 0.00 0.00 2.87
4122 4270 9.347934 CCATTGCGTATATAGTTAGAAGAAGAG 57.652 37.037 0.00 0.00 0.00 2.85
4206 4354 6.825610 TCAAACATTCCTTAAAGTTTGCCAT 58.174 32.000 11.89 0.00 46.23 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 1.542492 GGTAGACCCACGTGAGAAGA 58.458 55.000 19.30 0.00 0.00 2.87
66 67 0.957395 GACGGTAGACCCACGTGAGA 60.957 60.000 19.30 0.00 41.40 3.27
128 129 0.398318 AAGAGCCTTGGCGTTCTTCT 59.602 50.000 9.47 3.15 0.00 2.85
160 161 3.764466 CTCCCGCTCGGACTGCTT 61.764 66.667 10.28 0.00 34.86 3.91
189 190 4.116328 CGAGACGCCTCCTTCGCA 62.116 66.667 0.00 0.00 36.04 5.10
263 264 1.612950 CAGAGGAGGAGTCGATGATGG 59.387 57.143 0.00 0.00 0.00 3.51
282 283 2.333417 GGAGGAGCTGTCGTCGTCA 61.333 63.158 0.00 0.00 38.30 4.35
292 302 1.076632 ATTCGTCGGAGGAGGAGCT 60.077 57.895 0.31 0.00 38.23 4.09
349 362 2.995574 CCCCTTCTGGTCGTCGGT 60.996 66.667 0.00 0.00 0.00 4.69
379 392 7.639113 ACTAAAATCAACTTCACCACTTTCA 57.361 32.000 0.00 0.00 0.00 2.69
421 435 7.042992 TCACACAAACGACAGACAACTAAATAG 60.043 37.037 0.00 0.00 0.00 1.73
465 479 6.435277 ACATAGAAATTGCACAATGGTTCTCT 59.565 34.615 11.65 3.09 32.88 3.10
472 486 4.096231 TCCGGACATAGAAATTGCACAATG 59.904 41.667 0.00 0.00 0.00 2.82
577 596 2.115291 GGCACTCCTCAAATCGCCC 61.115 63.158 0.00 0.00 33.31 6.13
578 597 2.115291 GGGCACTCCTCAAATCGCC 61.115 63.158 0.00 0.00 38.85 5.54
625 645 4.636435 CCTCAAACGCCCGTGGGT 62.636 66.667 6.82 0.00 39.71 4.51
682 702 4.350368 TGTCTGCCAGTGACTTAAATCA 57.650 40.909 0.00 0.00 35.63 2.57
683 703 4.697352 ACATGTCTGCCAGTGACTTAAATC 59.303 41.667 0.00 0.00 35.63 2.17
684 704 4.456911 CACATGTCTGCCAGTGACTTAAAT 59.543 41.667 0.00 0.00 35.63 1.40
685 705 3.814842 CACATGTCTGCCAGTGACTTAAA 59.185 43.478 0.00 0.00 35.63 1.52
686 706 3.402110 CACATGTCTGCCAGTGACTTAA 58.598 45.455 0.00 0.00 35.63 1.85
687 707 2.289631 CCACATGTCTGCCAGTGACTTA 60.290 50.000 0.00 0.00 35.63 2.24
688 708 1.544093 CCACATGTCTGCCAGTGACTT 60.544 52.381 0.00 0.00 35.63 3.01
689 709 0.035881 CCACATGTCTGCCAGTGACT 59.964 55.000 0.00 0.00 35.63 3.41
690 710 1.580845 GCCACATGTCTGCCAGTGAC 61.581 60.000 0.00 0.00 33.99 3.67
691 711 1.302752 GCCACATGTCTGCCAGTGA 60.303 57.895 0.00 0.00 33.99 3.41
692 712 2.338015 GGCCACATGTCTGCCAGTG 61.338 63.158 24.49 0.46 44.70 3.66
693 713 2.034687 GGCCACATGTCTGCCAGT 59.965 61.111 24.49 0.00 44.70 4.00
696 716 1.027357 CTATTGGCCACATGTCTGCC 58.973 55.000 23.25 23.25 45.56 4.85
697 717 1.755179 ACTATTGGCCACATGTCTGC 58.245 50.000 3.88 8.12 0.00 4.26
698 718 4.572389 GTCTTACTATTGGCCACATGTCTG 59.428 45.833 3.88 1.34 0.00 3.51
714 734 6.209788 CCTTACAAACTCTCTCCTGTCTTACT 59.790 42.308 0.00 0.00 0.00 2.24
721 741 4.873746 TCACCTTACAAACTCTCTCCTG 57.126 45.455 0.00 0.00 0.00 3.86
743 767 9.796120 TCGAGTTTGAACATTTTAACAAATTCT 57.204 25.926 0.00 0.00 37.07 2.40
751 775 5.974751 GCAACCTCGAGTTTGAACATTTTAA 59.025 36.000 24.95 0.00 36.18 1.52
775 799 4.201802 GGTGGACTTTTGTTGTTGCATTTG 60.202 41.667 0.00 0.00 0.00 2.32
807 831 7.158697 CCGGTTTATCATGACCATCTAATGTA 58.841 38.462 0.00 0.00 35.63 2.29
810 834 5.514834 CCCCGGTTTATCATGACCATCTAAT 60.515 44.000 0.00 0.00 35.63 1.73
811 835 4.202419 CCCCGGTTTATCATGACCATCTAA 60.202 45.833 0.00 0.00 35.63 2.10
822 846 1.899617 GGACGTCCCCGGTTTATCA 59.100 57.895 24.75 0.00 38.78 2.15
849 873 0.893270 TGCAGTTTTCCCACATCCGG 60.893 55.000 0.00 0.00 0.00 5.14
850 874 1.176527 ATGCAGTTTTCCCACATCCG 58.823 50.000 0.00 0.00 0.00 4.18
854 878 2.079170 TGGAATGCAGTTTTCCCACA 57.921 45.000 13.71 0.00 41.68 4.17
857 881 3.026694 AGCTATGGAATGCAGTTTTCCC 58.973 45.455 13.71 0.00 41.68 3.97
868 892 0.035458 GCAGGCGGTAGCTATGGAAT 59.965 55.000 0.00 0.00 44.37 3.01
1087 1111 2.669569 TGGCTTCTTCAGTGGCGC 60.670 61.111 0.00 0.00 0.00 6.53
1090 1114 1.303643 GGGGTGGCTTCTTCAGTGG 60.304 63.158 0.00 0.00 0.00 4.00
1329 1353 2.610859 ACCGGCTGGAGGTGGAAT 60.611 61.111 21.41 0.00 41.10 3.01
1481 1505 4.778415 CGTCACTGTCGGCGAGGG 62.778 72.222 11.20 8.81 0.00 4.30
1838 1862 5.426504 CAGCAAGGTAACAGAGAGATGAAT 58.573 41.667 0.00 0.00 41.41 2.57
1844 1868 1.277557 AGGCAGCAAGGTAACAGAGAG 59.722 52.381 0.00 0.00 41.41 3.20
1955 1979 1.965754 GATCGGAGGGAGCAGCAACT 61.966 60.000 0.00 0.00 0.00 3.16
1956 1980 1.522580 GATCGGAGGGAGCAGCAAC 60.523 63.158 0.00 0.00 0.00 4.17
1959 1983 4.292178 CCGATCGGAGGGAGCAGC 62.292 72.222 30.62 0.00 37.50 5.25
1962 1986 0.966920 TATTTCCGATCGGAGGGAGC 59.033 55.000 33.67 0.00 46.06 4.70
2006 2030 7.339466 TCATGCTATCACTAAGTGTTCTACTCA 59.661 37.037 0.00 0.00 39.18 3.41
2007 2031 7.646130 GTCATGCTATCACTAAGTGTTCTACTC 59.354 40.741 0.00 0.00 39.18 2.59
2008 2032 7.340743 AGTCATGCTATCACTAAGTGTTCTACT 59.659 37.037 0.00 0.00 42.89 2.57
2009 2033 7.484975 AGTCATGCTATCACTAAGTGTTCTAC 58.515 38.462 0.00 0.00 34.79 2.59
2010 2034 7.646548 AGTCATGCTATCACTAAGTGTTCTA 57.353 36.000 0.00 0.00 34.79 2.10
2011 2035 6.537453 AGTCATGCTATCACTAAGTGTTCT 57.463 37.500 0.00 0.00 34.79 3.01
2012 2036 6.591834 ACAAGTCATGCTATCACTAAGTGTTC 59.408 38.462 0.00 0.00 34.79 3.18
2013 2037 6.467677 ACAAGTCATGCTATCACTAAGTGTT 58.532 36.000 0.00 0.00 34.79 3.32
2014 2038 6.042638 ACAAGTCATGCTATCACTAAGTGT 57.957 37.500 0.00 0.00 34.79 3.55
2015 2039 6.974932 AACAAGTCATGCTATCACTAAGTG 57.025 37.500 0.00 0.00 34.45 3.16
2016 2040 7.118390 GTCAAACAAGTCATGCTATCACTAAGT 59.882 37.037 0.00 0.00 0.00 2.24
2017 2041 7.118245 TGTCAAACAAGTCATGCTATCACTAAG 59.882 37.037 0.00 0.00 0.00 2.18
2056 2091 5.288952 GGTTTCTCTTTACGGAAGAATCTCG 59.711 44.000 5.24 0.00 43.56 4.04
2060 2095 5.246307 CCAGGTTTCTCTTTACGGAAGAAT 58.754 41.667 5.24 0.00 43.56 2.40
2061 2096 4.504340 CCCAGGTTTCTCTTTACGGAAGAA 60.504 45.833 5.24 0.00 43.56 2.52
2063 2098 3.244457 ACCCAGGTTTCTCTTTACGGAAG 60.244 47.826 0.00 0.00 36.67 3.46
2064 2099 2.707257 ACCCAGGTTTCTCTTTACGGAA 59.293 45.455 0.00 0.00 0.00 4.30
2208 2257 7.887996 TCAAATTTGATTTGCATGTTAGGTC 57.112 32.000 16.91 0.00 46.96 3.85
2227 2276 8.316214 AGTTTTGCTCCAATCAACATATCAAAT 58.684 29.630 0.00 0.00 0.00 2.32
2233 2282 6.127647 GGATCAGTTTTGCTCCAATCAACATA 60.128 38.462 0.00 0.00 39.04 2.29
2286 2335 2.037641 TGTGCTTGGGATCGATGATAGG 59.962 50.000 0.54 0.00 0.00 2.57
2506 2566 4.159506 GGATCTATCTGGATGCTCTACACC 59.840 50.000 0.00 0.00 32.50 4.16
2514 2574 1.895798 TCCACGGATCTATCTGGATGC 59.104 52.381 3.92 0.00 37.50 3.91
2594 2666 1.753368 GAGCGAATCCTGGGCTAGCT 61.753 60.000 15.72 7.21 37.10 3.32
2599 2671 1.522580 GACAGAGCGAATCCTGGGC 60.523 63.158 0.00 0.00 34.85 5.36
2668 2740 6.953091 GAACAATTTTCTGTTCGTGTGTAG 57.047 37.500 1.08 0.00 44.13 2.74
2763 2835 4.935495 CACCAGCACCAGCACCGT 62.935 66.667 0.00 0.00 45.49 4.83
2765 2837 4.962836 AGCACCAGCACCAGCACC 62.963 66.667 0.00 0.00 45.49 5.01
2766 2838 3.667282 CAGCACCAGCACCAGCAC 61.667 66.667 0.00 0.00 45.49 4.40
2769 2841 2.908428 TTGCAGCACCAGCACCAG 60.908 61.111 0.00 0.00 45.49 4.00
2770 2842 3.218470 GTTGCAGCACCAGCACCA 61.218 61.111 0.00 0.00 45.49 4.17
2914 3013 4.401925 CAATGTCTCCAAAGAGTTTCCCT 58.598 43.478 0.00 0.00 41.26 4.20
2944 3043 3.945921 ACCAATCATGTTGCTCTCATCTG 59.054 43.478 0.00 0.00 0.00 2.90
3165 3265 6.460399 GCGACACTATCCTCTCAGAAATAAGT 60.460 42.308 0.00 0.00 0.00 2.24
3238 3338 8.697067 GCAATGATGAAATTAGATTTGATTCGG 58.303 33.333 0.00 0.00 31.47 4.30
3517 3620 3.080319 GCTGAACTCCTGAAAGCTTCAT 58.920 45.455 0.00 0.00 39.30 2.57
3593 3696 6.480524 TGTTTGTACGTACGTATCTGTAGT 57.519 37.500 29.05 2.89 32.82 2.73
3594 3697 8.116136 TGTATGTTTGTACGTACGTATCTGTAG 58.884 37.037 29.05 0.00 45.65 2.74
3595 3698 7.969314 TGTATGTTTGTACGTACGTATCTGTA 58.031 34.615 29.05 16.72 45.65 2.74
3596 3699 6.841119 TGTATGTTTGTACGTACGTATCTGT 58.159 36.000 29.05 15.95 45.65 3.41
3597 3700 7.044510 CCTTGTATGTTTGTACGTACGTATCTG 60.045 40.741 29.05 10.16 45.65 2.90
3598 3701 6.968904 CCTTGTATGTTTGTACGTACGTATCT 59.031 38.462 29.05 13.44 45.65 1.98
3599 3702 6.966632 TCCTTGTATGTTTGTACGTACGTATC 59.033 38.462 29.05 21.65 45.65 2.24
3600 3703 6.851609 TCCTTGTATGTTTGTACGTACGTAT 58.148 36.000 29.05 16.50 45.65 3.06
3649 3752 3.513515 AGCAACAAAAGAGACCACCAAAA 59.486 39.130 0.00 0.00 0.00 2.44
3661 3764 4.387862 GCAGATGATCCAAAGCAACAAAAG 59.612 41.667 0.00 0.00 0.00 2.27
3721 3824 8.712228 AGAGTGAGGAGACCAATTTAAATTTT 57.288 30.769 10.77 1.35 0.00 1.82
3733 3836 1.381522 GTCCGTAGAGTGAGGAGACC 58.618 60.000 0.00 0.00 34.29 3.85
3870 4015 3.181397 CATGAACCGCAAACATTCCATC 58.819 45.455 0.00 0.00 0.00 3.51
3916 4061 2.613730 TTTTTGTCACGCGTTCAACA 57.386 40.000 21.02 17.28 0.00 3.33
3960 4108 7.950512 TCAGAGCTCCAAAATATGTTTGAAAA 58.049 30.769 10.93 0.00 0.00 2.29
3970 4118 9.260002 GAAAAACAAAATCAGAGCTCCAAAATA 57.740 29.630 10.93 0.00 0.00 1.40
4024 4172 3.840468 TGTGCATGCAAAGATTCATCAC 58.160 40.909 24.58 5.73 0.00 3.06
4025 4173 4.429108 CATGTGCATGCAAAGATTCATCA 58.571 39.130 24.58 13.16 31.39 3.07
4038 4186 0.457853 GCAAGACCAGCATGTGCATG 60.458 55.000 7.83 7.74 45.16 4.06
4039 4187 0.611062 AGCAAGACCAGCATGTGCAT 60.611 50.000 7.83 0.00 45.16 3.96
4040 4188 1.228337 AGCAAGACCAGCATGTGCA 60.228 52.632 7.83 0.00 45.16 4.57
4041 4189 1.239296 TGAGCAAGACCAGCATGTGC 61.239 55.000 0.00 0.00 42.49 4.57
4042 4190 1.199327 CTTGAGCAAGACCAGCATGTG 59.801 52.381 4.22 0.00 40.79 3.21
4043 4191 1.531423 CTTGAGCAAGACCAGCATGT 58.469 50.000 4.22 0.00 40.79 3.21
4044 4192 0.809385 CCTTGAGCAAGACCAGCATG 59.191 55.000 11.61 0.00 40.79 4.06
4045 4193 0.964358 GCCTTGAGCAAGACCAGCAT 60.964 55.000 11.61 0.00 42.97 3.79
4046 4194 1.601759 GCCTTGAGCAAGACCAGCA 60.602 57.895 11.61 0.00 42.97 4.41
4047 4195 3.272031 GCCTTGAGCAAGACCAGC 58.728 61.111 11.61 3.05 42.97 4.85
4056 4204 2.947652 TGATGAGCTATTTGCCTTGAGC 59.052 45.455 0.00 0.00 44.23 4.26
4057 4205 3.314635 GGTGATGAGCTATTTGCCTTGAG 59.685 47.826 0.00 0.00 44.23 3.02
4058 4206 3.282021 GGTGATGAGCTATTTGCCTTGA 58.718 45.455 0.00 0.00 44.23 3.02
4059 4207 2.360165 GGGTGATGAGCTATTTGCCTTG 59.640 50.000 0.00 0.00 44.23 3.61
4060 4208 2.025037 TGGGTGATGAGCTATTTGCCTT 60.025 45.455 0.00 0.00 44.23 4.35
4061 4209 1.565759 TGGGTGATGAGCTATTTGCCT 59.434 47.619 0.00 0.00 44.23 4.75
4062 4210 1.952296 CTGGGTGATGAGCTATTTGCC 59.048 52.381 0.00 0.00 44.23 4.52
4063 4211 1.336125 GCTGGGTGATGAGCTATTTGC 59.664 52.381 0.00 0.00 43.29 3.68
4064 4212 2.646930 TGCTGGGTGATGAGCTATTTG 58.353 47.619 0.00 0.00 36.11 2.32
4065 4213 3.019564 GTTGCTGGGTGATGAGCTATTT 58.980 45.455 0.00 0.00 36.11 1.40
4066 4214 2.240667 AGTTGCTGGGTGATGAGCTATT 59.759 45.455 0.00 0.00 36.11 1.73
4067 4215 1.842562 AGTTGCTGGGTGATGAGCTAT 59.157 47.619 0.00 0.00 36.11 2.97
4068 4216 1.065926 CAGTTGCTGGGTGATGAGCTA 60.066 52.381 0.00 0.00 36.11 3.32
4069 4217 0.322277 CAGTTGCTGGGTGATGAGCT 60.322 55.000 0.00 0.00 36.11 4.09
4070 4218 2.177950 CAGTTGCTGGGTGATGAGC 58.822 57.895 0.00 0.00 35.65 4.26
4089 4237 0.609131 ATATACGCAATGGGCTGGCC 60.609 55.000 14.23 14.23 41.67 5.36
4090 4238 2.009774 CTATATACGCAATGGGCTGGC 58.990 52.381 0.00 0.00 41.67 4.85
4091 4239 3.334583 ACTATATACGCAATGGGCTGG 57.665 47.619 0.00 0.00 41.67 4.85
4092 4240 5.720202 TCTAACTATATACGCAATGGGCTG 58.280 41.667 0.00 0.00 41.67 4.85
4093 4241 5.995565 TCTAACTATATACGCAATGGGCT 57.004 39.130 0.00 0.00 41.67 5.19
4094 4242 6.395629 TCTTCTAACTATATACGCAATGGGC 58.604 40.000 0.00 0.00 39.90 5.36
4095 4243 8.304596 TCTTCTTCTAACTATATACGCAATGGG 58.695 37.037 0.00 0.00 0.00 4.00
4096 4244 9.347934 CTCTTCTTCTAACTATATACGCAATGG 57.652 37.037 0.00 0.00 0.00 3.16
4136 4284 7.119262 CACGAAATCACATAGGTACTCCTTTTT 59.881 37.037 0.00 0.00 42.12 1.94
4137 4285 6.594159 CACGAAATCACATAGGTACTCCTTTT 59.406 38.462 0.00 0.00 42.12 2.27
4138 4286 6.070995 TCACGAAATCACATAGGTACTCCTTT 60.071 38.462 0.00 0.00 42.12 3.11
4139 4287 5.421056 TCACGAAATCACATAGGTACTCCTT 59.579 40.000 0.00 0.00 42.12 3.36
4141 4289 5.258456 TCACGAAATCACATAGGTACTCC 57.742 43.478 0.00 0.00 41.75 3.85
4142 4290 6.504398 TCATCACGAAATCACATAGGTACTC 58.496 40.000 0.00 0.00 41.75 2.59
4143 4291 6.465439 TCATCACGAAATCACATAGGTACT 57.535 37.500 0.00 0.00 46.37 2.73
4144 4292 7.653713 AGATTCATCACGAAATCACATAGGTAC 59.346 37.037 0.00 0.00 37.12 3.34
4145 4293 7.726216 AGATTCATCACGAAATCACATAGGTA 58.274 34.615 0.00 0.00 37.12 3.08
4146 4294 6.586344 AGATTCATCACGAAATCACATAGGT 58.414 36.000 0.00 0.00 37.12 3.08
4147 4295 7.488187 AAGATTCATCACGAAATCACATAGG 57.512 36.000 0.00 0.00 37.12 2.57
4148 4296 7.375280 GCAAAGATTCATCACGAAATCACATAG 59.625 37.037 0.00 0.00 37.12 2.23
4149 4297 7.148272 TGCAAAGATTCATCACGAAATCACATA 60.148 33.333 0.00 0.00 37.12 2.29
4150 4298 6.032094 GCAAAGATTCATCACGAAATCACAT 58.968 36.000 0.00 0.00 37.12 3.21
4151 4299 5.048852 TGCAAAGATTCATCACGAAATCACA 60.049 36.000 0.00 0.00 37.12 3.58
4152 4300 5.284660 GTGCAAAGATTCATCACGAAATCAC 59.715 40.000 0.00 0.00 37.12 3.06
4153 4301 5.393124 GTGCAAAGATTCATCACGAAATCA 58.607 37.500 0.00 0.00 37.12 2.57
4154 4302 5.921784 GTGCAAAGATTCATCACGAAATC 57.078 39.130 0.00 0.00 37.12 2.17
4254 4405 4.713553 TCAAATGCTCCTAGTGTGAACAA 58.286 39.130 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.