Multiple sequence alignment - TraesCS1D01G140000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G140000 chr1D 100.000 1601 0 0 1 1601 192761187 192759587 0.000000e+00 2957.0
1 TraesCS1D01G140000 chr1D 100.000 479 0 0 1873 2351 192759315 192758837 0.000000e+00 885.0
2 TraesCS1D01G140000 chr2D 94.889 587 27 3 860 1444 273018689 273019274 0.000000e+00 915.0
3 TraesCS1D01G140000 chr6D 94.388 588 31 2 860 1445 413277604 413278191 0.000000e+00 902.0
4 TraesCS1D01G140000 chr7D 94.208 587 32 2 860 1445 497911705 497911120 0.000000e+00 894.0
5 TraesCS1D01G140000 chr7D 94.198 586 31 3 860 1444 232925725 232926308 0.000000e+00 891.0
6 TraesCS1D01G140000 chr7D 93.878 588 34 2 860 1446 149106200 149105614 0.000000e+00 885.0
7 TraesCS1D01G140000 chr5A 94.188 585 33 1 860 1444 635793755 635793172 0.000000e+00 891.0
8 TraesCS1D01G140000 chr3D 94.188 585 33 1 860 1444 87390814 87391397 0.000000e+00 891.0
9 TraesCS1D01G140000 chr4D 93.888 589 32 3 860 1445 127148891 127149478 0.000000e+00 885.0
10 TraesCS1D01G140000 chr1B 94.017 585 34 1 860 1443 611790364 611790948 0.000000e+00 885.0
11 TraesCS1D01G140000 chr1B 91.429 525 30 8 233 757 267818861 267818352 0.000000e+00 706.0
12 TraesCS1D01G140000 chr1B 95.331 257 10 2 2097 2351 267809102 267808846 7.820000e-110 407.0
13 TraesCS1D01G140000 chr1B 90.351 114 8 1 1964 2077 267817318 267817208 1.880000e-31 147.0
14 TraesCS1D01G140000 chr1A 91.978 536 21 13 233 760 238955733 238955212 0.000000e+00 732.0
15 TraesCS1D01G140000 chr1A 92.806 278 16 4 2075 2351 238955068 238954794 1.310000e-107 399.0
16 TraesCS1D01G140000 chr1A 87.705 122 10 3 1960 2079 238955216 238955098 1.130000e-28 137.0
17 TraesCS1D01G140000 chr6B 97.368 152 4 0 1443 1594 134727550 134727399 2.320000e-65 259.0
18 TraesCS1D01G140000 chr6B 98.000 100 2 0 759 858 134727633 134727534 8.640000e-40 174.0
19 TraesCS1D01G140000 chr6B 96.629 89 2 1 1873 1961 134727311 134727224 1.880000e-31 147.0
20 TraesCS1D01G140000 chr6A 96.129 155 6 0 1440 1594 117359313 117359467 1.080000e-63 254.0
21 TraesCS1D01G140000 chr6A 94.444 162 9 0 1440 1601 464504076 464504237 1.390000e-62 250.0
22 TraesCS1D01G140000 chr6A 91.429 105 7 2 754 858 464503993 464504095 2.440000e-30 143.0
23 TraesCS1D01G140000 chr6A 95.455 88 3 1 1873 1960 117359555 117359641 3.150000e-29 139.0
24 TraesCS1D01G140000 chr6A 94.318 88 4 1 1873 1960 464504298 464504384 1.470000e-27 134.0
25 TraesCS1D01G140000 chr2A 96.053 152 6 0 1443 1594 624102771 624102620 5.020000e-62 248.0
26 TraesCS1D01G140000 chr2A 94.382 89 4 1 1873 1961 624102532 624102445 4.080000e-28 135.0
27 TraesCS1D01G140000 chr2A 93.671 79 5 0 780 858 624102833 624102755 4.100000e-23 119.0
28 TraesCS1D01G140000 chr7A 94.771 153 6 2 1443 1594 635552421 635552270 1.090000e-58 237.0
29 TraesCS1D01G140000 chr7B 95.000 100 3 2 759 858 660671599 660671502 3.130000e-34 156.0
30 TraesCS1D01G140000 chr7B 95.455 88 3 1 1873 1960 660671387 660671301 3.150000e-29 139.0
31 TraesCS1D01G140000 chr7B 94.000 50 3 0 1443 1492 660671518 660671469 2.510000e-10 76.8
32 TraesCS1D01G140000 chr5B 95.745 94 4 0 759 852 700550931 700550838 4.050000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G140000 chr1D 192758837 192761187 2350 True 1921.000000 2957 100.000000 1 2351 2 chr1D.!!$R1 2350
1 TraesCS1D01G140000 chr2D 273018689 273019274 585 False 915.000000 915 94.889000 860 1444 1 chr2D.!!$F1 584
2 TraesCS1D01G140000 chr6D 413277604 413278191 587 False 902.000000 902 94.388000 860 1445 1 chr6D.!!$F1 585
3 TraesCS1D01G140000 chr7D 497911120 497911705 585 True 894.000000 894 94.208000 860 1445 1 chr7D.!!$R2 585
4 TraesCS1D01G140000 chr7D 232925725 232926308 583 False 891.000000 891 94.198000 860 1444 1 chr7D.!!$F1 584
5 TraesCS1D01G140000 chr7D 149105614 149106200 586 True 885.000000 885 93.878000 860 1446 1 chr7D.!!$R1 586
6 TraesCS1D01G140000 chr5A 635793172 635793755 583 True 891.000000 891 94.188000 860 1444 1 chr5A.!!$R1 584
7 TraesCS1D01G140000 chr3D 87390814 87391397 583 False 891.000000 891 94.188000 860 1444 1 chr3D.!!$F1 584
8 TraesCS1D01G140000 chr4D 127148891 127149478 587 False 885.000000 885 93.888000 860 1445 1 chr4D.!!$F1 585
9 TraesCS1D01G140000 chr1B 611790364 611790948 584 False 885.000000 885 94.017000 860 1443 1 chr1B.!!$F1 583
10 TraesCS1D01G140000 chr1B 267817208 267818861 1653 True 426.500000 706 90.890000 233 2077 2 chr1B.!!$R2 1844
11 TraesCS1D01G140000 chr1A 238954794 238955733 939 True 422.666667 732 90.829667 233 2351 3 chr1A.!!$R1 2118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.038166 AGGCTTCATCCGGCTGAAAA 59.962 50.0 20.41 0.91 34.86 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1891 2619 0.038166 TGCAGGGATTGAGTGAACCC 59.962 55.0 0.0 0.0 42.36 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.805307 CAAATTACCGCCGGCGCA 61.805 61.111 42.39 28.88 38.24 6.09
18 19 3.505184 AAATTACCGCCGGCGCAG 61.505 61.111 42.39 31.29 38.24 5.18
31 32 4.845580 CGCAGGCTTCATCCGGCT 62.846 66.667 0.00 0.00 43.69 5.52
34 35 3.403624 AGGCTTCATCCGGCTGAA 58.596 55.556 19.07 19.07 35.79 3.02
35 36 1.685224 AGGCTTCATCCGGCTGAAA 59.315 52.632 20.41 6.17 34.86 2.69
36 37 0.038166 AGGCTTCATCCGGCTGAAAA 59.962 50.000 20.41 0.91 34.86 2.29
37 38 0.887933 GGCTTCATCCGGCTGAAAAA 59.112 50.000 20.41 0.18 34.86 1.94
78 79 2.998316 AAGTGGAGATGCTCTTAGGC 57.002 50.000 0.00 0.00 0.00 3.93
79 80 1.871418 AGTGGAGATGCTCTTAGGCA 58.129 50.000 0.00 0.00 46.63 4.75
80 81 2.191400 AGTGGAGATGCTCTTAGGCAA 58.809 47.619 0.04 0.00 45.68 4.52
81 82 2.573462 AGTGGAGATGCTCTTAGGCAAA 59.427 45.455 0.04 0.00 45.68 3.68
82 83 2.680339 GTGGAGATGCTCTTAGGCAAAC 59.320 50.000 0.04 0.00 45.68 2.93
83 84 2.573462 TGGAGATGCTCTTAGGCAAACT 59.427 45.455 0.04 3.49 45.68 2.66
84 85 3.202097 GGAGATGCTCTTAGGCAAACTC 58.798 50.000 16.15 16.15 45.68 3.01
85 86 3.369892 GGAGATGCTCTTAGGCAAACTCA 60.370 47.826 20.83 0.00 45.68 3.41
86 87 3.870419 GAGATGCTCTTAGGCAAACTCAG 59.130 47.826 17.80 0.00 45.68 3.35
87 88 2.479566 TGCTCTTAGGCAAACTCAGG 57.520 50.000 0.00 0.00 39.43 3.86
88 89 1.977854 TGCTCTTAGGCAAACTCAGGA 59.022 47.619 0.00 0.00 39.43 3.86
89 90 2.289694 TGCTCTTAGGCAAACTCAGGAC 60.290 50.000 0.00 0.00 39.43 3.85
90 91 2.027653 GCTCTTAGGCAAACTCAGGACT 60.028 50.000 0.00 0.00 0.00 3.85
91 92 3.195825 GCTCTTAGGCAAACTCAGGACTA 59.804 47.826 0.00 0.00 0.00 2.59
92 93 4.679372 GCTCTTAGGCAAACTCAGGACTAG 60.679 50.000 0.00 0.00 0.00 2.57
93 94 3.769844 TCTTAGGCAAACTCAGGACTAGG 59.230 47.826 0.00 0.00 0.00 3.02
94 95 1.280457 AGGCAAACTCAGGACTAGGG 58.720 55.000 0.00 0.00 0.00 3.53
95 96 0.393132 GGCAAACTCAGGACTAGGGC 60.393 60.000 0.00 0.00 0.00 5.19
96 97 0.324943 GCAAACTCAGGACTAGGGCA 59.675 55.000 0.00 0.00 0.00 5.36
97 98 1.946283 GCAAACTCAGGACTAGGGCAC 60.946 57.143 0.00 0.00 0.00 5.01
98 99 1.347707 CAAACTCAGGACTAGGGCACA 59.652 52.381 0.00 0.00 0.00 4.57
99 100 0.977395 AACTCAGGACTAGGGCACAC 59.023 55.000 0.00 0.00 0.00 3.82
100 101 0.115349 ACTCAGGACTAGGGCACACT 59.885 55.000 0.00 0.00 0.00 3.55
101 102 1.270907 CTCAGGACTAGGGCACACTT 58.729 55.000 0.00 0.00 0.00 3.16
102 103 1.625818 CTCAGGACTAGGGCACACTTT 59.374 52.381 0.00 0.00 0.00 2.66
103 104 2.832129 CTCAGGACTAGGGCACACTTTA 59.168 50.000 0.00 0.00 0.00 1.85
104 105 2.832129 TCAGGACTAGGGCACACTTTAG 59.168 50.000 0.00 0.00 0.00 1.85
105 106 2.093447 CAGGACTAGGGCACACTTTAGG 60.093 54.545 0.00 0.00 0.00 2.69
106 107 1.407025 GGACTAGGGCACACTTTAGGC 60.407 57.143 0.00 0.00 0.00 3.93
107 108 1.278127 GACTAGGGCACACTTTAGGCA 59.722 52.381 0.00 0.00 0.00 4.75
108 109 1.702957 ACTAGGGCACACTTTAGGCAA 59.297 47.619 0.00 0.00 0.00 4.52
109 110 2.107552 ACTAGGGCACACTTTAGGCAAA 59.892 45.455 0.00 0.00 0.00 3.68
110 111 1.328279 AGGGCACACTTTAGGCAAAC 58.672 50.000 0.00 0.00 0.00 2.93
111 112 1.133482 AGGGCACACTTTAGGCAAACT 60.133 47.619 0.00 0.00 0.00 2.66
112 113 1.686587 GGGCACACTTTAGGCAAACTT 59.313 47.619 0.00 0.00 0.00 2.66
113 114 2.288213 GGGCACACTTTAGGCAAACTTC 60.288 50.000 0.00 0.00 0.00 3.01
114 115 2.360801 GGCACACTTTAGGCAAACTTCA 59.639 45.455 0.00 0.00 0.00 3.02
115 116 3.550842 GGCACACTTTAGGCAAACTTCAG 60.551 47.826 0.00 0.00 0.00 3.02
116 117 3.550842 GCACACTTTAGGCAAACTTCAGG 60.551 47.826 0.00 0.00 0.00 3.86
117 118 3.632145 CACACTTTAGGCAAACTTCAGGT 59.368 43.478 0.00 0.00 0.00 4.00
118 119 4.097892 CACACTTTAGGCAAACTTCAGGTT 59.902 41.667 0.00 0.00 40.28 3.50
119 120 5.298276 CACACTTTAGGCAAACTTCAGGTTA 59.702 40.000 0.00 0.00 37.12 2.85
120 121 5.889289 ACACTTTAGGCAAACTTCAGGTTAA 59.111 36.000 0.00 0.00 37.12 2.01
121 122 6.378848 ACACTTTAGGCAAACTTCAGGTTAAA 59.621 34.615 0.00 0.00 37.12 1.52
122 123 7.069455 ACACTTTAGGCAAACTTCAGGTTAAAT 59.931 33.333 0.00 0.00 37.12 1.40
123 124 8.573035 CACTTTAGGCAAACTTCAGGTTAAATA 58.427 33.333 0.00 0.00 37.12 1.40
124 125 9.309224 ACTTTAGGCAAACTTCAGGTTAAATAT 57.691 29.630 0.00 0.00 37.12 1.28
128 129 7.772166 AGGCAAACTTCAGGTTAAATATTAGC 58.228 34.615 0.00 0.00 37.12 3.09
129 130 7.615757 AGGCAAACTTCAGGTTAAATATTAGCT 59.384 33.333 0.00 0.00 37.12 3.32
130 131 8.899771 GGCAAACTTCAGGTTAAATATTAGCTA 58.100 33.333 0.00 0.00 37.12 3.32
131 132 9.717892 GCAAACTTCAGGTTAAATATTAGCTAC 57.282 33.333 0.00 0.00 37.12 3.58
164 165 7.921786 AGAGTACAAAATTTGCTATAGTGCA 57.078 32.000 5.52 0.00 41.65 4.57
165 166 8.511604 AGAGTACAAAATTTGCTATAGTGCAT 57.488 30.769 5.52 0.00 42.96 3.96
166 167 9.613428 AGAGTACAAAATTTGCTATAGTGCATA 57.387 29.630 5.52 0.00 42.96 3.14
170 171 8.931385 ACAAAATTTGCTATAGTGCATAAAGG 57.069 30.769 5.52 0.00 42.96 3.11
171 172 8.748412 ACAAAATTTGCTATAGTGCATAAAGGA 58.252 29.630 5.52 0.00 42.96 3.36
172 173 9.585099 CAAAATTTGCTATAGTGCATAAAGGAA 57.415 29.630 0.84 0.00 42.96 3.36
173 174 9.586435 AAAATTTGCTATAGTGCATAAAGGAAC 57.414 29.630 0.84 0.00 42.96 3.62
174 175 8.525290 AATTTGCTATAGTGCATAAAGGAACT 57.475 30.769 0.84 0.00 42.96 3.01
175 176 7.553881 TTTGCTATAGTGCATAAAGGAACTC 57.446 36.000 0.84 0.00 42.96 3.01
176 177 6.233905 TGCTATAGTGCATAAAGGAACTCA 57.766 37.500 0.84 0.00 36.04 3.41
177 178 6.283694 TGCTATAGTGCATAAAGGAACTCAG 58.716 40.000 0.84 0.00 36.04 3.35
178 179 6.127054 TGCTATAGTGCATAAAGGAACTCAGT 60.127 38.462 0.84 0.00 36.04 3.41
179 180 6.422400 GCTATAGTGCATAAAGGAACTCAGTC 59.578 42.308 0.84 0.00 38.49 3.51
180 181 4.899352 AGTGCATAAAGGAACTCAGTCT 57.101 40.909 0.00 0.00 38.49 3.24
181 182 4.826556 AGTGCATAAAGGAACTCAGTCTC 58.173 43.478 0.00 0.00 38.49 3.36
182 183 4.284490 AGTGCATAAAGGAACTCAGTCTCA 59.716 41.667 0.00 0.00 38.49 3.27
183 184 4.390297 GTGCATAAAGGAACTCAGTCTCAC 59.610 45.833 0.00 0.00 38.49 3.51
184 185 3.614616 GCATAAAGGAACTCAGTCTCACG 59.385 47.826 0.00 0.00 38.49 4.35
185 186 4.618460 GCATAAAGGAACTCAGTCTCACGA 60.618 45.833 0.00 0.00 38.49 4.35
186 187 3.372660 AAAGGAACTCAGTCTCACGAC 57.627 47.619 0.00 0.00 38.49 4.34
187 188 1.249407 AGGAACTCAGTCTCACGACC 58.751 55.000 0.00 0.00 41.16 4.79
188 189 0.244178 GGAACTCAGTCTCACGACCC 59.756 60.000 0.00 0.00 41.16 4.46
189 190 0.959553 GAACTCAGTCTCACGACCCA 59.040 55.000 0.00 0.00 41.16 4.51
190 191 0.962489 AACTCAGTCTCACGACCCAG 59.038 55.000 0.00 0.00 41.16 4.45
191 192 0.896019 ACTCAGTCTCACGACCCAGG 60.896 60.000 0.00 0.00 41.16 4.45
192 193 2.219325 CTCAGTCTCACGACCCAGGC 62.219 65.000 0.00 0.00 41.16 4.85
193 194 2.997897 AGTCTCACGACCCAGGCC 60.998 66.667 0.00 0.00 41.16 5.19
194 195 3.311110 GTCTCACGACCCAGGCCA 61.311 66.667 5.01 0.00 33.98 5.36
195 196 3.311110 TCTCACGACCCAGGCCAC 61.311 66.667 5.01 0.00 0.00 5.01
196 197 4.394712 CTCACGACCCAGGCCACC 62.395 72.222 5.01 0.00 0.00 4.61
208 209 4.736896 GCCACCGTCCGGACAGTC 62.737 72.222 32.80 14.06 38.96 3.51
209 210 2.989824 CCACCGTCCGGACAGTCT 60.990 66.667 32.80 9.79 38.96 3.24
210 211 2.258591 CACCGTCCGGACAGTCTG 59.741 66.667 32.80 16.62 38.96 3.51
211 212 2.989824 ACCGTCCGGACAGTCTGG 60.990 66.667 32.80 26.04 44.41 3.86
212 213 3.760035 CCGTCCGGACAGTCTGGG 61.760 72.222 32.80 20.82 43.23 4.45
213 214 3.760035 CGTCCGGACAGTCTGGGG 61.760 72.222 32.80 15.48 43.23 4.96
214 215 2.603776 GTCCGGACAGTCTGGGGT 60.604 66.667 29.75 0.00 43.23 4.95
215 216 2.283676 TCCGGACAGTCTGGGGTC 60.284 66.667 25.90 0.00 43.23 4.46
216 217 2.283966 CCGGACAGTCTGGGGTCT 60.284 66.667 19.90 0.00 39.28 3.85
217 218 2.650116 CCGGACAGTCTGGGGTCTG 61.650 68.421 19.90 0.00 39.28 3.51
218 219 1.908793 CGGACAGTCTGGGGTCTGT 60.909 63.158 4.53 0.00 45.81 3.41
221 222 3.059287 ACAGTCTGGGGTCTGTCTC 57.941 57.895 4.53 0.00 40.28 3.36
222 223 0.543174 ACAGTCTGGGGTCTGTCTCC 60.543 60.000 4.53 0.00 40.28 3.71
223 224 1.304547 AGTCTGGGGTCTGTCTCCG 60.305 63.158 0.00 0.00 40.23 4.63
224 225 2.680352 TCTGGGGTCTGTCTCCGC 60.680 66.667 0.00 0.00 40.23 5.54
225 226 3.775654 CTGGGGTCTGTCTCCGCC 61.776 72.222 0.00 0.00 40.23 6.13
228 229 3.692406 GGGTCTGTCTCCGCCGTT 61.692 66.667 0.00 0.00 0.00 4.44
229 230 2.432628 GGTCTGTCTCCGCCGTTG 60.433 66.667 0.00 0.00 0.00 4.10
230 231 2.432628 GTCTGTCTCCGCCGTTGG 60.433 66.667 0.00 0.00 0.00 3.77
231 232 4.373116 TCTGTCTCCGCCGTTGGC 62.373 66.667 0.00 0.00 46.75 4.52
259 260 4.579869 AGTACCTTACATGAAACTGCCAG 58.420 43.478 0.00 0.00 0.00 4.85
267 268 0.183492 TGAAACTGCCAGGTTCTGCT 59.817 50.000 22.24 0.00 42.31 4.24
294 296 8.594881 TTTTTCAACAGAAAAACAACTAGCAA 57.405 26.923 10.96 0.00 42.90 3.91
300 302 7.449934 ACAGAAAAACAACTAGCAATTTTCG 57.550 32.000 13.43 11.73 42.11 3.46
302 304 7.009174 ACAGAAAAACAACTAGCAATTTTCGTG 59.991 33.333 13.43 13.53 42.11 4.35
315 317 2.702898 TTTCGTGGCATGTTGTGATG 57.297 45.000 6.60 0.00 0.00 3.07
338 340 3.201290 GAGCTGATTGATGTCGGTGATT 58.799 45.455 0.00 0.00 0.00 2.57
348 350 5.009631 TGATGTCGGTGATTCAAGGAAAAT 58.990 37.500 0.00 0.00 0.00 1.82
393 395 1.071857 AGATGGAGCATCGCATCATGT 59.928 47.619 0.00 0.00 44.67 3.21
394 396 1.463831 GATGGAGCATCGCATCATGTC 59.536 52.381 0.00 0.00 40.35 3.06
395 397 0.533531 TGGAGCATCGCATCATGTCC 60.534 55.000 0.00 0.00 34.37 4.02
396 398 1.233285 GGAGCATCGCATCATGTCCC 61.233 60.000 0.00 0.00 34.37 4.46
415 417 0.471591 CTCCCTGATGAGAGGAGGGG 60.472 65.000 0.00 0.00 45.94 4.79
430 434 0.623324 AGGGGGAAATGGACCGATGA 60.623 55.000 0.00 0.00 0.00 2.92
482 486 2.383527 GCGCGTATGGATAGCAGCC 61.384 63.158 8.43 0.00 0.00 4.85
484 488 1.738099 GCGTATGGATAGCAGCCCG 60.738 63.158 0.00 0.00 0.00 6.13
657 665 2.035961 ACACTAACTCGCACAGTGATGT 59.964 45.455 4.15 0.00 41.80 3.06
664 672 3.181476 ACTCGCACAGTGATGTATGCATA 60.181 43.478 4.15 1.16 37.97 3.14
749 757 3.985279 GTCATGTAGAGCGTTACACACAA 59.015 43.478 5.64 0.00 36.45 3.33
750 758 3.985279 TCATGTAGAGCGTTACACACAAC 59.015 43.478 5.64 0.00 36.45 3.32
751 759 3.720949 TGTAGAGCGTTACACACAACT 57.279 42.857 0.01 0.00 0.00 3.16
753 761 4.046462 TGTAGAGCGTTACACACAACTTC 58.954 43.478 0.01 0.00 0.00 3.01
754 762 3.454371 AGAGCGTTACACACAACTTCT 57.546 42.857 0.00 0.00 0.00 2.85
755 763 3.793559 AGAGCGTTACACACAACTTCTT 58.206 40.909 0.00 0.00 0.00 2.52
756 764 4.940463 AGAGCGTTACACACAACTTCTTA 58.060 39.130 0.00 0.00 0.00 2.10
757 765 4.743644 AGAGCGTTACACACAACTTCTTAC 59.256 41.667 0.00 0.00 0.00 2.34
758 766 3.488310 AGCGTTACACACAACTTCTTACG 59.512 43.478 0.00 0.00 0.00 3.18
759 767 3.362304 GCGTTACACACAACTTCTTACGG 60.362 47.826 0.00 0.00 0.00 4.02
760 768 3.362304 CGTTACACACAACTTCTTACGGC 60.362 47.826 0.00 0.00 0.00 5.68
762 770 1.140252 ACACACAACTTCTTACGGCCT 59.860 47.619 0.00 0.00 0.00 5.19
763 771 1.798813 CACACAACTTCTTACGGCCTC 59.201 52.381 0.00 0.00 0.00 4.70
764 772 1.068474 CACAACTTCTTACGGCCTCG 58.932 55.000 0.00 0.00 43.02 4.63
774 782 2.877582 CGGCCTCGTTCGGTTACG 60.878 66.667 0.00 0.00 42.68 3.18
775 783 3.184003 GGCCTCGTTCGGTTACGC 61.184 66.667 0.00 0.00 41.16 4.42
776 784 3.184003 GCCTCGTTCGGTTACGCC 61.184 66.667 0.00 0.00 41.16 5.68
777 785 2.507769 CCTCGTTCGGTTACGCCC 60.508 66.667 0.00 0.00 41.16 6.13
778 786 2.259204 CTCGTTCGGTTACGCCCA 59.741 61.111 0.00 0.00 41.16 5.36
779 787 1.804326 CTCGTTCGGTTACGCCCAG 60.804 63.158 0.00 0.00 41.16 4.45
780 788 3.484547 CGTTCGGTTACGCCCAGC 61.485 66.667 0.00 0.00 40.69 4.85
781 789 3.122971 GTTCGGTTACGCCCAGCC 61.123 66.667 0.00 0.00 40.69 4.85
782 790 4.397832 TTCGGTTACGCCCAGCCC 62.398 66.667 0.00 0.00 40.69 5.19
794 802 4.341502 CAGCCCCGCGTGGTTTTG 62.342 66.667 15.14 4.90 0.00 2.44
795 803 4.572571 AGCCCCGCGTGGTTTTGA 62.573 61.111 15.14 0.00 0.00 2.69
796 804 4.038080 GCCCCGCGTGGTTTTGAG 62.038 66.667 15.14 0.00 0.00 3.02
797 805 3.361977 CCCCGCGTGGTTTTGAGG 61.362 66.667 15.14 2.49 0.00 3.86
798 806 4.038080 CCCGCGTGGTTTTGAGGC 62.038 66.667 15.14 0.00 0.00 4.70
799 807 4.383602 CCGCGTGGTTTTGAGGCG 62.384 66.667 6.91 0.00 44.95 5.52
801 809 3.027292 GCGTGGTTTTGAGGCGAA 58.973 55.556 0.00 0.00 0.00 4.70
802 810 1.579429 GCGTGGTTTTGAGGCGAAT 59.421 52.632 0.00 0.00 0.00 3.34
803 811 0.454452 GCGTGGTTTTGAGGCGAATC 60.454 55.000 0.00 0.00 0.00 2.52
804 812 0.168128 CGTGGTTTTGAGGCGAATCC 59.832 55.000 0.00 0.00 0.00 3.01
805 813 1.243902 GTGGTTTTGAGGCGAATCCA 58.756 50.000 0.00 0.00 37.29 3.41
806 814 1.068541 GTGGTTTTGAGGCGAATCCAC 60.069 52.381 10.34 10.34 39.15 4.02
807 815 0.168128 GGTTTTGAGGCGAATCCACG 59.832 55.000 0.00 0.00 37.29 4.94
808 816 0.168128 GTTTTGAGGCGAATCCACGG 59.832 55.000 0.00 0.00 37.29 4.94
809 817 0.958382 TTTTGAGGCGAATCCACGGG 60.958 55.000 0.00 0.00 37.29 5.28
810 818 2.813226 TTTGAGGCGAATCCACGGGG 62.813 60.000 0.00 0.00 37.29 5.73
811 819 4.547367 GAGGCGAATCCACGGGGG 62.547 72.222 2.42 0.00 37.29 5.40
813 821 4.851179 GGCGAATCCACGGGGGTC 62.851 72.222 2.42 0.03 38.11 4.46
814 822 4.851179 GCGAATCCACGGGGGTCC 62.851 72.222 2.42 0.00 38.11 4.46
815 823 3.395702 CGAATCCACGGGGGTCCA 61.396 66.667 2.42 0.00 38.11 4.02
816 824 2.271173 GAATCCACGGGGGTCCAC 59.729 66.667 2.42 0.00 38.11 4.02
817 825 3.675619 GAATCCACGGGGGTCCACG 62.676 68.421 10.42 10.42 38.11 4.94
824 832 3.472726 GGGGGTCCACGCGGATTA 61.473 66.667 12.47 0.00 45.33 1.75
825 833 2.202974 GGGGTCCACGCGGATTAC 60.203 66.667 12.47 2.54 45.33 1.89
826 834 2.728435 GGGGTCCACGCGGATTACT 61.728 63.158 12.47 0.00 45.33 2.24
827 835 1.227176 GGGTCCACGCGGATTACTC 60.227 63.158 12.47 0.00 45.33 2.59
828 836 1.227176 GGTCCACGCGGATTACTCC 60.227 63.158 12.47 0.00 45.33 3.85
829 837 1.227176 GTCCACGCGGATTACTCCC 60.227 63.158 12.47 0.00 45.33 4.30
830 838 2.948840 GTCCACGCGGATTACTCCCG 62.949 65.000 12.47 7.97 45.33 5.14
848 856 2.869233 CGCAAGGGGAATAAACCATG 57.131 50.000 0.00 0.00 0.00 3.66
849 857 1.202405 CGCAAGGGGAATAAACCATGC 60.202 52.381 0.00 0.00 34.55 4.06
850 858 1.138859 GCAAGGGGAATAAACCATGCC 59.861 52.381 0.00 0.00 33.01 4.40
855 863 1.119684 GGAATAAACCATGCCCACCC 58.880 55.000 0.00 0.00 0.00 4.61
856 864 1.621072 GGAATAAACCATGCCCACCCA 60.621 52.381 0.00 0.00 0.00 4.51
857 865 2.397597 GAATAAACCATGCCCACCCAT 58.602 47.619 0.00 0.00 0.00 4.00
858 866 2.566708 ATAAACCATGCCCACCCATT 57.433 45.000 0.00 0.00 0.00 3.16
918 928 5.389859 TCTTCAAATGCGTCCATGAAAAT 57.610 34.783 0.00 0.00 0.00 1.82
935 946 0.116940 AATGGGGGTTGGCAATGTCT 59.883 50.000 1.92 0.00 0.00 3.41
938 949 1.055849 GGGGGTTGGCAATGTCTTTT 58.944 50.000 1.92 0.00 0.00 2.27
945 956 3.252554 TGGCAATGTCTTTTTAGGGGT 57.747 42.857 0.00 0.00 0.00 4.95
1047 1059 3.460825 AGGTAGGTTTATTGCAGGAGGA 58.539 45.455 0.00 0.00 0.00 3.71
1110 1122 3.092301 GGCCTTAGCTCTCAAATTTGGT 58.908 45.455 17.90 0.93 39.73 3.67
1193 1205 1.608025 GGTTGAGACCATGCAAGACGA 60.608 52.381 0.00 0.00 45.77 4.20
1208 1220 1.863662 GACGAAGGACAGTCAGCGGA 61.864 60.000 2.17 0.00 37.34 5.54
1405 2133 8.420222 TGTTTCTCACAAATGATGTATTGGTTT 58.580 29.630 0.00 0.00 41.46 3.27
1463 2191 5.675684 AAAACCATGACCACCCATATTTC 57.324 39.130 0.00 0.00 0.00 2.17
1464 2192 4.608170 AACCATGACCACCCATATTTCT 57.392 40.909 0.00 0.00 0.00 2.52
1465 2193 3.902218 ACCATGACCACCCATATTTCTG 58.098 45.455 0.00 0.00 0.00 3.02
1469 2197 2.290641 TGACCACCCATATTTCTGCGTT 60.291 45.455 0.00 0.00 0.00 4.84
1470 2198 2.354821 GACCACCCATATTTCTGCGTTC 59.645 50.000 0.00 0.00 0.00 3.95
1472 2200 1.014352 ACCCATATTTCTGCGTTCGC 58.986 50.000 10.34 10.34 0.00 4.70
1473 2201 1.299541 CCCATATTTCTGCGTTCGCT 58.700 50.000 17.63 0.28 0.00 4.93
1475 2203 2.869801 CCCATATTTCTGCGTTCGCTTA 59.130 45.455 17.63 3.65 0.00 3.09
1478 2206 2.527442 ATTTCTGCGTTCGCTTAAGC 57.473 45.000 17.83 17.83 37.78 3.09
1480 2208 1.296056 TTCTGCGTTCGCTTAAGCCC 61.296 55.000 21.53 8.88 37.91 5.19
1482 2210 1.970917 CTGCGTTCGCTTAAGCCCTG 61.971 60.000 21.53 8.14 37.91 4.45
1487 2215 2.742372 CGCTTAAGCCCTGCGTGT 60.742 61.111 21.53 0.00 44.00 4.49
1490 2218 0.955919 GCTTAAGCCCTGCGTGTTCT 60.956 55.000 17.00 0.00 34.31 3.01
1491 2219 1.523758 CTTAAGCCCTGCGTGTTCTT 58.476 50.000 0.00 0.00 0.00 2.52
1494 2222 1.507141 AAGCCCTGCGTGTTCTTTCG 61.507 55.000 0.00 0.00 0.00 3.46
1496 2224 2.556287 CCTGCGTGTTCTTTCGGC 59.444 61.111 0.00 0.00 0.00 5.54
1501 2229 2.664436 CGTGTTCTTTCGGCGACCC 61.664 63.158 10.16 0.00 0.00 4.46
1502 2230 1.595929 GTGTTCTTTCGGCGACCCA 60.596 57.895 10.16 0.00 0.00 4.51
1504 2232 0.464013 TGTTCTTTCGGCGACCCAAA 60.464 50.000 10.16 0.00 0.00 3.28
1505 2233 0.040692 GTTCTTTCGGCGACCCAAAC 60.041 55.000 10.16 8.44 0.00 2.93
1506 2234 1.167781 TTCTTTCGGCGACCCAAACC 61.168 55.000 10.16 0.00 0.00 3.27
1507 2235 2.595172 TTTCGGCGACCCAAACCC 60.595 61.111 10.16 0.00 0.00 4.11
1511 2239 4.735358 GGCGACCCAAACCCCTCC 62.735 72.222 0.00 0.00 0.00 4.30
1512 2240 3.961414 GCGACCCAAACCCCTCCA 61.961 66.667 0.00 0.00 0.00 3.86
1513 2241 2.840576 CGACCCAAACCCCTCCAA 59.159 61.111 0.00 0.00 0.00 3.53
1515 2243 0.251608 CGACCCAAACCCCTCCAAAT 60.252 55.000 0.00 0.00 0.00 2.32
1518 2246 0.116143 CCCAAACCCCTCCAAATCCA 59.884 55.000 0.00 0.00 0.00 3.41
1519 2247 1.266178 CCAAACCCCTCCAAATCCAC 58.734 55.000 0.00 0.00 0.00 4.02
1520 2248 0.887933 CAAACCCCTCCAAATCCACG 59.112 55.000 0.00 0.00 0.00 4.94
1521 2249 0.898326 AAACCCCTCCAAATCCACGC 60.898 55.000 0.00 0.00 0.00 5.34
1523 2251 2.824041 CCCTCCAAATCCACGCGG 60.824 66.667 12.47 0.00 0.00 6.46
1533 2261 3.429043 TCCACGCGGAACTAATCAC 57.571 52.632 12.47 0.00 38.83 3.06
1534 2262 0.108520 TCCACGCGGAACTAATCACC 60.109 55.000 12.47 0.00 38.83 4.02
1535 2263 1.087771 CCACGCGGAACTAATCACCC 61.088 60.000 12.47 0.00 0.00 4.61
1536 2264 0.108329 CACGCGGAACTAATCACCCT 60.108 55.000 12.47 0.00 0.00 4.34
1538 2266 0.460311 CGCGGAACTAATCACCCTCT 59.540 55.000 0.00 0.00 0.00 3.69
1539 2267 1.679680 CGCGGAACTAATCACCCTCTA 59.320 52.381 0.00 0.00 0.00 2.43
1540 2268 2.287668 CGCGGAACTAATCACCCTCTAG 60.288 54.545 0.00 0.00 0.00 2.43
1542 2270 2.693591 CGGAACTAATCACCCTCTAGCA 59.306 50.000 0.00 0.00 0.00 3.49
1543 2271 3.491104 CGGAACTAATCACCCTCTAGCAC 60.491 52.174 0.00 0.00 0.00 4.40
1545 2273 2.399580 ACTAATCACCCTCTAGCACCC 58.600 52.381 0.00 0.00 0.00 4.61
1546 2274 1.694696 CTAATCACCCTCTAGCACCCC 59.305 57.143 0.00 0.00 0.00 4.95
1547 2275 1.338136 AATCACCCTCTAGCACCCCG 61.338 60.000 0.00 0.00 0.00 5.73
1548 2276 2.531483 ATCACCCTCTAGCACCCCGT 62.531 60.000 0.00 0.00 0.00 5.28
1550 2278 3.470888 CCCTCTAGCACCCCGTGG 61.471 72.222 0.00 0.00 33.64 4.94
1551 2279 2.363795 CCTCTAGCACCCCGTGGA 60.364 66.667 0.00 0.00 33.64 4.02
1552 2280 1.987855 CCTCTAGCACCCCGTGGAA 60.988 63.158 0.00 0.00 33.64 3.53
1553 2281 1.517832 CTCTAGCACCCCGTGGAAG 59.482 63.158 0.00 0.00 33.64 3.46
1554 2282 1.961180 CTCTAGCACCCCGTGGAAGG 61.961 65.000 0.00 0.00 33.64 3.46
1555 2283 1.987855 CTAGCACCCCGTGGAAGGA 60.988 63.158 0.00 0.00 33.64 3.36
1556 2284 1.536907 TAGCACCCCGTGGAAGGAA 60.537 57.895 0.00 0.00 33.64 3.36
1558 2286 1.749258 GCACCCCGTGGAAGGAATC 60.749 63.158 0.00 0.00 33.64 2.52
1566 2294 3.476419 GGAAGGAATCCCGGGCGA 61.476 66.667 18.49 0.00 43.00 5.54
1567 2295 2.587889 GAAGGAATCCCGGGCGAA 59.412 61.111 18.49 0.00 37.58 4.70
1568 2296 1.523938 GAAGGAATCCCGGGCGAAG 60.524 63.158 18.49 0.00 37.58 3.79
1569 2297 3.699134 AAGGAATCCCGGGCGAAGC 62.699 63.158 18.49 2.57 46.99 3.86
1581 2309 3.093278 CGAAGCGCAACTCCCATC 58.907 61.111 11.47 0.00 0.00 3.51
1582 2310 1.448540 CGAAGCGCAACTCCCATCT 60.449 57.895 11.47 0.00 0.00 2.90
1583 2311 1.424493 CGAAGCGCAACTCCCATCTC 61.424 60.000 11.47 0.00 0.00 2.75
1584 2312 0.107945 GAAGCGCAACTCCCATCTCT 60.108 55.000 11.47 0.00 0.00 3.10
1585 2313 0.107945 AAGCGCAACTCCCATCTCTC 60.108 55.000 11.47 0.00 0.00 3.20
1586 2314 1.522580 GCGCAACTCCCATCTCTCC 60.523 63.158 0.30 0.00 0.00 3.71
1587 2315 1.144936 CGCAACTCCCATCTCTCCC 59.855 63.158 0.00 0.00 0.00 4.30
1588 2316 1.144936 GCAACTCCCATCTCTCCCG 59.855 63.158 0.00 0.00 0.00 5.14
1589 2317 1.330655 GCAACTCCCATCTCTCCCGA 61.331 60.000 0.00 0.00 0.00 5.14
1590 2318 0.749649 CAACTCCCATCTCTCCCGAG 59.250 60.000 0.00 0.00 38.67 4.63
1591 2319 1.045911 AACTCCCATCTCTCCCGAGC 61.046 60.000 0.00 0.00 37.19 5.03
1592 2320 2.519541 TCCCATCTCTCCCGAGCG 60.520 66.667 0.00 0.00 37.19 5.03
1593 2321 2.519541 CCCATCTCTCCCGAGCGA 60.520 66.667 0.00 0.00 37.19 4.93
1594 2322 2.560119 CCCATCTCTCCCGAGCGAG 61.560 68.421 0.00 0.00 37.19 5.03
1595 2323 2.560119 CCATCTCTCCCGAGCGAGG 61.560 68.421 0.00 0.00 37.19 4.63
1596 2324 2.909965 ATCTCTCCCGAGCGAGGC 60.910 66.667 0.00 0.00 37.19 4.70
1889 2617 3.407967 GGATCGGGGTGCAGGGAA 61.408 66.667 0.00 0.00 0.00 3.97
1890 2618 2.190578 GATCGGGGTGCAGGGAAG 59.809 66.667 0.00 0.00 0.00 3.46
1891 2619 3.406595 GATCGGGGTGCAGGGAAGG 62.407 68.421 0.00 0.00 0.00 3.46
1895 2623 3.590574 GGGTGCAGGGAAGGGGTT 61.591 66.667 0.00 0.00 0.00 4.11
1896 2624 2.035783 GGTGCAGGGAAGGGGTTC 59.964 66.667 0.00 0.00 0.00 3.62
1897 2625 2.840753 GGTGCAGGGAAGGGGTTCA 61.841 63.158 0.00 0.00 0.00 3.18
1898 2626 1.603739 GTGCAGGGAAGGGGTTCAC 60.604 63.158 0.00 0.00 0.00 3.18
1899 2627 1.774217 TGCAGGGAAGGGGTTCACT 60.774 57.895 0.00 0.00 34.43 3.41
1900 2628 1.002011 GCAGGGAAGGGGTTCACTC 60.002 63.158 0.00 0.00 31.05 3.51
1901 2629 1.779061 GCAGGGAAGGGGTTCACTCA 61.779 60.000 0.00 0.00 31.05 3.41
1902 2630 0.771127 CAGGGAAGGGGTTCACTCAA 59.229 55.000 0.00 0.00 31.05 3.02
1903 2631 1.355720 CAGGGAAGGGGTTCACTCAAT 59.644 52.381 0.00 0.00 31.05 2.57
1904 2632 1.636003 AGGGAAGGGGTTCACTCAATC 59.364 52.381 0.00 0.00 25.50 2.67
1905 2633 1.341089 GGGAAGGGGTTCACTCAATCC 60.341 57.143 0.00 0.00 33.84 3.01
1909 2637 2.873797 GGGTTCACTCAATCCCTGC 58.126 57.895 0.00 0.00 37.18 4.85
1910 2638 0.038166 GGGTTCACTCAATCCCTGCA 59.962 55.000 0.00 0.00 37.18 4.41
1911 2639 1.457346 GGTTCACTCAATCCCTGCAG 58.543 55.000 6.78 6.78 0.00 4.41
1912 2640 1.457346 GTTCACTCAATCCCTGCAGG 58.543 55.000 26.87 26.87 0.00 4.85
1922 2650 3.419858 CCTGCAGGGATTGGACCT 58.580 61.111 26.14 0.00 39.43 3.85
1923 2651 1.225704 CCTGCAGGGATTGGACCTC 59.774 63.158 26.14 0.00 35.78 3.85
1924 2652 1.225704 CTGCAGGGATTGGACCTCC 59.774 63.158 5.57 0.00 35.78 4.30
1925 2653 1.229951 TGCAGGGATTGGACCTCCT 60.230 57.895 0.07 0.00 35.78 3.69
1926 2654 0.044092 TGCAGGGATTGGACCTCCTA 59.956 55.000 0.07 0.00 35.78 2.94
1927 2655 0.761802 GCAGGGATTGGACCTCCTAG 59.238 60.000 0.07 0.00 35.78 3.02
1928 2656 1.972207 GCAGGGATTGGACCTCCTAGT 60.972 57.143 0.07 0.00 35.78 2.57
1929 2657 1.765314 CAGGGATTGGACCTCCTAGTG 59.235 57.143 0.07 0.00 35.78 2.74
1930 2658 1.132500 GGGATTGGACCTCCTAGTGG 58.868 60.000 0.07 0.00 36.82 4.00
1931 2659 1.344087 GGGATTGGACCTCCTAGTGGA 60.344 57.143 6.09 0.00 40.69 4.02
1932 2660 2.695585 GGATTGGACCTCCTAGTGGAT 58.304 52.381 6.09 0.00 42.29 3.41
1933 2661 3.049344 GGATTGGACCTCCTAGTGGATT 58.951 50.000 6.09 0.00 42.29 3.01
1934 2662 4.232091 GGATTGGACCTCCTAGTGGATTA 58.768 47.826 6.09 0.00 42.29 1.75
1935 2663 4.658901 GGATTGGACCTCCTAGTGGATTAA 59.341 45.833 6.09 0.00 42.29 1.40
1936 2664 5.132144 GGATTGGACCTCCTAGTGGATTAAA 59.868 44.000 6.09 0.00 42.29 1.52
1937 2665 6.183361 GGATTGGACCTCCTAGTGGATTAAAT 60.183 42.308 6.09 1.72 42.29 1.40
1938 2666 5.888982 TGGACCTCCTAGTGGATTAAATC 57.111 43.478 6.09 0.00 42.29 2.17
1939 2667 4.658901 TGGACCTCCTAGTGGATTAAATCC 59.341 45.833 6.09 0.00 42.29 3.01
1940 2668 5.819803 TGGACCTCCTAGTGGATTAAATCCA 60.820 44.000 0.00 0.00 46.35 3.41
1953 2681 6.677781 GATTAAATCCATGAGAACCGAACA 57.322 37.500 0.00 0.00 0.00 3.18
1954 2682 7.083875 GATTAAATCCATGAGAACCGAACAA 57.916 36.000 0.00 0.00 0.00 2.83
1955 2683 6.494893 TTAAATCCATGAGAACCGAACAAG 57.505 37.500 0.00 0.00 0.00 3.16
1956 2684 2.472695 TCCATGAGAACCGAACAAGG 57.527 50.000 0.00 0.00 37.30 3.61
1957 2685 0.804989 CCATGAGAACCGAACAAGGC 59.195 55.000 0.00 0.00 33.69 4.35
1958 2686 0.804989 CATGAGAACCGAACAAGGCC 59.195 55.000 0.00 0.00 33.69 5.19
1959 2687 0.693049 ATGAGAACCGAACAAGGCCT 59.307 50.000 0.00 0.00 33.69 5.19
1960 2688 1.344065 TGAGAACCGAACAAGGCCTA 58.656 50.000 5.16 0.00 33.69 3.93
1961 2689 1.001633 TGAGAACCGAACAAGGCCTAC 59.998 52.381 5.16 0.00 33.69 3.18
1962 2690 0.323957 AGAACCGAACAAGGCCTACC 59.676 55.000 5.16 0.00 33.69 3.18
1991 2719 4.069304 GTGGCGCCATTATAACAGGATTA 58.931 43.478 35.23 0.00 0.00 1.75
1992 2720 4.700213 GTGGCGCCATTATAACAGGATTAT 59.300 41.667 35.23 0.00 0.00 1.28
1993 2721 4.941263 TGGCGCCATTATAACAGGATTATC 59.059 41.667 29.03 0.00 0.00 1.75
1994 2722 4.034048 GGCGCCATTATAACAGGATTATCG 59.966 45.833 24.80 4.80 0.00 2.92
1997 2725 4.335594 GCCATTATAACAGGATTATCGGCC 59.664 45.833 9.42 0.00 0.00 6.13
2088 2852 5.291178 TCCAATCATTTGCAAAGTTGTGAG 58.709 37.500 18.19 9.57 0.00 3.51
2108 2872 4.049393 GCAATAGGTAGCCAGCCG 57.951 61.111 0.00 0.00 0.00 5.52
2167 2931 1.447838 CGTCTCCGGTCCATTGTGG 60.448 63.158 0.00 0.00 39.43 4.17
2173 2937 2.036256 GGTCCATTGTGGCTGGCT 59.964 61.111 2.00 0.00 37.47 4.75
2221 2985 2.230025 GGCCCAGAAAAGAAGAAGCTTC 59.770 50.000 19.11 19.11 0.00 3.86
2225 2989 5.510349 GCCCAGAAAAGAAGAAGCTTCAAAT 60.510 40.000 27.57 13.60 0.00 2.32
2227 2991 7.578380 GCCCAGAAAAGAAGAAGCTTCAAATAT 60.578 37.037 27.57 8.56 0.00 1.28
2291 3055 0.175989 GGACTCCATGTTCTCCGTCC 59.824 60.000 0.00 0.00 34.79 4.79
2293 3057 1.141881 CTCCATGTTCTCCGTCCCG 59.858 63.158 0.00 0.00 0.00 5.14
2317 3081 1.072331 GTGTCCCGGCAATCTATCCAT 59.928 52.381 0.00 0.00 0.00 3.41
2321 3085 1.625315 CCCGGCAATCTATCCATCTCA 59.375 52.381 0.00 0.00 0.00 3.27
2347 3112 6.676237 TTGTATCTTTGCGCTCATCATTTA 57.324 33.333 9.73 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.733190 CTGCGCCGGCGGTAATTTG 62.733 63.158 45.81 19.86 44.10 2.32
1 2 3.505184 CTGCGCCGGCGGTAATTT 61.505 61.111 45.81 0.00 44.10 1.82
14 15 4.845580 AGCCGGATGAAGCCTGCG 62.846 66.667 5.05 0.00 42.25 5.18
15 16 3.207669 CAGCCGGATGAAGCCTGC 61.208 66.667 16.48 0.00 38.31 4.85
16 17 0.677731 TTTCAGCCGGATGAAGCCTG 60.678 55.000 31.60 15.11 40.16 4.85
17 18 0.038166 TTTTCAGCCGGATGAAGCCT 59.962 50.000 31.60 2.11 40.16 4.58
18 19 0.887933 TTTTTCAGCCGGATGAAGCC 59.112 50.000 31.60 0.00 40.16 4.35
66 67 2.941720 CCTGAGTTTGCCTAAGAGCATC 59.058 50.000 0.00 0.00 43.64 3.91
67 68 2.573462 TCCTGAGTTTGCCTAAGAGCAT 59.427 45.455 0.00 0.00 43.64 3.79
68 69 1.977854 TCCTGAGTTTGCCTAAGAGCA 59.022 47.619 0.00 0.00 42.17 4.26
69 70 2.027653 AGTCCTGAGTTTGCCTAAGAGC 60.028 50.000 0.00 0.00 0.00 4.09
70 71 3.971245 AGTCCTGAGTTTGCCTAAGAG 57.029 47.619 0.00 0.00 0.00 2.85
71 72 3.769844 CCTAGTCCTGAGTTTGCCTAAGA 59.230 47.826 0.00 0.00 0.00 2.10
72 73 3.118592 CCCTAGTCCTGAGTTTGCCTAAG 60.119 52.174 0.00 0.00 0.00 2.18
73 74 2.838202 CCCTAGTCCTGAGTTTGCCTAA 59.162 50.000 0.00 0.00 0.00 2.69
74 75 2.467880 CCCTAGTCCTGAGTTTGCCTA 58.532 52.381 0.00 0.00 0.00 3.93
75 76 1.280457 CCCTAGTCCTGAGTTTGCCT 58.720 55.000 0.00 0.00 0.00 4.75
76 77 0.393132 GCCCTAGTCCTGAGTTTGCC 60.393 60.000 0.00 0.00 0.00 4.52
77 78 0.324943 TGCCCTAGTCCTGAGTTTGC 59.675 55.000 0.00 0.00 0.00 3.68
78 79 1.347707 TGTGCCCTAGTCCTGAGTTTG 59.652 52.381 0.00 0.00 0.00 2.93
79 80 1.348036 GTGTGCCCTAGTCCTGAGTTT 59.652 52.381 0.00 0.00 0.00 2.66
80 81 0.977395 GTGTGCCCTAGTCCTGAGTT 59.023 55.000 0.00 0.00 0.00 3.01
81 82 0.115349 AGTGTGCCCTAGTCCTGAGT 59.885 55.000 0.00 0.00 0.00 3.41
82 83 1.270907 AAGTGTGCCCTAGTCCTGAG 58.729 55.000 0.00 0.00 0.00 3.35
83 84 1.729586 AAAGTGTGCCCTAGTCCTGA 58.270 50.000 0.00 0.00 0.00 3.86
84 85 2.093447 CCTAAAGTGTGCCCTAGTCCTG 60.093 54.545 0.00 0.00 0.00 3.86
85 86 2.188817 CCTAAAGTGTGCCCTAGTCCT 58.811 52.381 0.00 0.00 0.00 3.85
86 87 1.407025 GCCTAAAGTGTGCCCTAGTCC 60.407 57.143 0.00 0.00 0.00 3.85
87 88 1.278127 TGCCTAAAGTGTGCCCTAGTC 59.722 52.381 0.00 0.00 0.00 2.59
88 89 1.358152 TGCCTAAAGTGTGCCCTAGT 58.642 50.000 0.00 0.00 0.00 2.57
89 90 2.488153 GTTTGCCTAAAGTGTGCCCTAG 59.512 50.000 0.00 0.00 0.00 3.02
90 91 2.107552 AGTTTGCCTAAAGTGTGCCCTA 59.892 45.455 0.00 0.00 0.00 3.53
91 92 1.133482 AGTTTGCCTAAAGTGTGCCCT 60.133 47.619 0.00 0.00 0.00 5.19
92 93 1.328279 AGTTTGCCTAAAGTGTGCCC 58.672 50.000 0.00 0.00 0.00 5.36
93 94 2.360801 TGAAGTTTGCCTAAAGTGTGCC 59.639 45.455 0.00 0.00 30.07 5.01
94 95 3.550842 CCTGAAGTTTGCCTAAAGTGTGC 60.551 47.826 0.00 0.00 30.07 4.57
95 96 3.632145 ACCTGAAGTTTGCCTAAAGTGTG 59.368 43.478 0.00 0.00 30.07 3.82
96 97 3.898482 ACCTGAAGTTTGCCTAAAGTGT 58.102 40.909 0.00 0.00 30.07 3.55
97 98 4.918810 AACCTGAAGTTTGCCTAAAGTG 57.081 40.909 0.00 0.00 33.89 3.16
98 99 7.597288 ATTTAACCTGAAGTTTGCCTAAAGT 57.403 32.000 0.00 0.00 40.05 2.66
102 103 8.899771 GCTAATATTTAACCTGAAGTTTGCCTA 58.100 33.333 0.00 0.00 40.05 3.93
103 104 7.615757 AGCTAATATTTAACCTGAAGTTTGCCT 59.384 33.333 0.00 0.00 40.05 4.75
104 105 7.772166 AGCTAATATTTAACCTGAAGTTTGCC 58.228 34.615 0.00 0.00 40.05 4.52
105 106 9.717892 GTAGCTAATATTTAACCTGAAGTTTGC 57.282 33.333 0.00 0.00 40.05 3.68
138 139 8.792633 TGCACTATAGCAAATTTTGTACTCTTT 58.207 29.630 10.65 0.00 42.46 2.52
139 140 8.335532 TGCACTATAGCAAATTTTGTACTCTT 57.664 30.769 10.65 0.00 42.46 2.85
140 141 7.921786 TGCACTATAGCAAATTTTGTACTCT 57.078 32.000 10.65 2.32 42.46 3.24
154 155 6.284459 ACTGAGTTCCTTTATGCACTATAGC 58.716 40.000 0.00 0.00 0.00 2.97
155 156 7.721402 AGACTGAGTTCCTTTATGCACTATAG 58.279 38.462 0.00 0.00 0.00 1.31
156 157 7.342026 TGAGACTGAGTTCCTTTATGCACTATA 59.658 37.037 0.00 0.00 0.00 1.31
157 158 6.155221 TGAGACTGAGTTCCTTTATGCACTAT 59.845 38.462 0.00 0.00 0.00 2.12
158 159 5.480422 TGAGACTGAGTTCCTTTATGCACTA 59.520 40.000 0.00 0.00 0.00 2.74
159 160 4.284490 TGAGACTGAGTTCCTTTATGCACT 59.716 41.667 0.00 0.00 0.00 4.40
160 161 4.390297 GTGAGACTGAGTTCCTTTATGCAC 59.610 45.833 0.00 0.00 0.00 4.57
161 162 4.569943 GTGAGACTGAGTTCCTTTATGCA 58.430 43.478 0.00 0.00 0.00 3.96
162 163 3.614616 CGTGAGACTGAGTTCCTTTATGC 59.385 47.826 0.00 0.00 0.00 3.14
163 164 5.060662 TCGTGAGACTGAGTTCCTTTATG 57.939 43.478 0.00 0.00 33.31 1.90
178 179 3.311110 GTGGCCTGGGTCGTGAGA 61.311 66.667 3.32 0.00 38.16 3.27
179 180 4.394712 GGTGGCCTGGGTCGTGAG 62.395 72.222 3.32 0.00 0.00 3.51
195 196 3.760035 CCCAGACTGTCCGGACGG 61.760 72.222 36.59 36.59 43.20 4.79
196 197 3.760035 CCCCAGACTGTCCGGACG 61.760 72.222 28.70 23.92 0.00 4.79
197 198 2.603776 ACCCCAGACTGTCCGGAC 60.604 66.667 28.17 28.17 0.00 4.79
198 199 2.283676 GACCCCAGACTGTCCGGA 60.284 66.667 11.65 0.00 0.00 5.14
199 200 2.283966 AGACCCCAGACTGTCCGG 60.284 66.667 3.76 3.33 31.76 5.14
200 201 1.908793 ACAGACCCCAGACTGTCCG 60.909 63.158 3.76 0.00 44.11 4.79
201 202 4.217112 ACAGACCCCAGACTGTCC 57.783 61.111 3.76 0.00 44.11 4.02
204 205 1.599606 CGGAGACAGACCCCAGACTG 61.600 65.000 0.00 0.00 40.96 3.51
205 206 1.304547 CGGAGACAGACCCCAGACT 60.305 63.158 0.00 0.00 0.00 3.24
206 207 3.007973 GCGGAGACAGACCCCAGAC 62.008 68.421 0.00 0.00 0.00 3.51
207 208 2.680352 GCGGAGACAGACCCCAGA 60.680 66.667 0.00 0.00 0.00 3.86
208 209 3.775654 GGCGGAGACAGACCCCAG 61.776 72.222 0.00 0.00 31.66 4.45
211 212 3.692406 AACGGCGGAGACAGACCC 61.692 66.667 13.24 0.00 27.25 4.46
212 213 2.432628 CAACGGCGGAGACAGACC 60.433 66.667 13.24 0.00 27.25 3.85
213 214 2.432628 CCAACGGCGGAGACAGAC 60.433 66.667 13.24 0.00 27.25 3.51
214 215 4.373116 GCCAACGGCGGAGACAGA 62.373 66.667 13.24 0.00 39.62 3.41
224 225 2.433664 GTACTCGTGGGCCAACGG 60.434 66.667 31.84 23.52 43.73 4.44
225 226 2.433664 GGTACTCGTGGGCCAACG 60.434 66.667 27.50 27.50 44.92 4.10
226 227 0.609662 TAAGGTACTCGTGGGCCAAC 59.390 55.000 8.40 0.96 38.49 3.77
227 228 0.609662 GTAAGGTACTCGTGGGCCAA 59.390 55.000 8.40 0.00 38.49 4.52
228 229 0.542467 TGTAAGGTACTCGTGGGCCA 60.542 55.000 0.00 0.00 38.49 5.36
229 230 0.828677 ATGTAAGGTACTCGTGGGCC 59.171 55.000 0.00 0.00 38.49 5.80
230 231 1.479323 TCATGTAAGGTACTCGTGGGC 59.521 52.381 0.00 0.00 38.49 5.36
231 232 3.880047 TTCATGTAAGGTACTCGTGGG 57.120 47.619 0.00 0.00 38.49 4.61
236 237 4.575885 TGGCAGTTTCATGTAAGGTACTC 58.424 43.478 0.00 0.00 38.49 2.59
288 290 3.492421 ACATGCCACGAAAATTGCTAG 57.508 42.857 0.00 0.00 0.00 3.42
289 291 3.005261 ACAACATGCCACGAAAATTGCTA 59.995 39.130 0.00 0.00 0.00 3.49
290 292 2.224018 ACAACATGCCACGAAAATTGCT 60.224 40.909 0.00 0.00 0.00 3.91
291 293 2.096811 CACAACATGCCACGAAAATTGC 60.097 45.455 0.00 0.00 0.00 3.56
292 294 3.379240 TCACAACATGCCACGAAAATTG 58.621 40.909 0.00 0.00 0.00 2.32
293 295 3.724508 TCACAACATGCCACGAAAATT 57.275 38.095 0.00 0.00 0.00 1.82
294 296 3.577667 CATCACAACATGCCACGAAAAT 58.422 40.909 0.00 0.00 0.00 1.82
300 302 0.813184 CTCCCATCACAACATGCCAC 59.187 55.000 0.00 0.00 0.00 5.01
302 304 0.682209 AGCTCCCATCACAACATGCC 60.682 55.000 0.00 0.00 0.00 4.40
315 317 0.179000 ACCGACATCAATCAGCTCCC 59.821 55.000 0.00 0.00 0.00 4.30
338 340 9.793259 TTCTCTTTTAGCTTCTATTTTCCTTGA 57.207 29.630 0.00 0.00 0.00 3.02
393 395 0.560193 CTCCTCTCATCAGGGAGGGA 59.440 60.000 11.28 4.50 46.51 4.20
394 396 3.146218 CTCCTCTCATCAGGGAGGG 57.854 63.158 11.28 0.00 46.51 4.30
415 417 2.158755 ACCATCTCATCGGTCCATTTCC 60.159 50.000 0.00 0.00 0.00 3.13
430 434 3.645212 CTCCAGACCATGATGTACCATCT 59.355 47.826 0.00 0.00 0.00 2.90
482 486 4.670621 GCATTACAAAATCGATTAGCACGG 59.329 41.667 11.83 0.51 0.00 4.94
484 488 5.498159 TCGCATTACAAAATCGATTAGCAC 58.502 37.500 11.83 0.00 0.00 4.40
563 568 7.236432 AGCACTCTCCATAAGTATATGATTGGT 59.764 37.037 0.00 0.00 41.25 3.67
634 642 2.739292 TCACTGTGCGAGTTAGTGTTC 58.261 47.619 2.12 0.00 41.82 3.18
657 665 3.309682 GCTTTGTCTTCGTGCTATGCATA 59.690 43.478 6.20 6.20 41.91 3.14
664 672 4.726416 CATAATTGCTTTGTCTTCGTGCT 58.274 39.130 0.00 0.00 0.00 4.40
743 751 1.798813 GAGGCCGTAAGAAGTTGTGTG 59.201 52.381 0.00 0.00 43.02 3.82
757 765 2.877582 CGTAACCGAACGAGGCCG 60.878 66.667 0.00 0.00 45.68 6.13
758 766 3.184003 GCGTAACCGAACGAGGCC 61.184 66.667 0.00 0.00 45.68 5.19
759 767 3.184003 GGCGTAACCGAACGAGGC 61.184 66.667 8.74 0.00 45.68 4.70
760 768 2.507769 GGGCGTAACCGAACGAGG 60.508 66.667 8.74 0.00 45.68 4.63
762 770 2.259204 CTGGGCGTAACCGAACGA 59.741 61.111 8.74 0.00 45.68 3.85
763 771 3.484547 GCTGGGCGTAACCGAACG 61.485 66.667 1.28 1.28 45.58 3.95
764 772 3.122971 GGCTGGGCGTAACCGAAC 61.123 66.667 0.00 0.00 40.62 3.95
777 785 4.341502 CAAAACCACGCGGGGCTG 62.342 66.667 31.32 19.19 42.91 4.85
778 786 4.572571 TCAAAACCACGCGGGGCT 62.573 61.111 31.32 14.48 42.91 5.19
779 787 4.038080 CTCAAAACCACGCGGGGC 62.038 66.667 31.32 0.00 42.91 5.80
780 788 3.361977 CCTCAAAACCACGCGGGG 61.362 66.667 29.60 29.60 42.91 5.73
781 789 4.038080 GCCTCAAAACCACGCGGG 62.038 66.667 12.47 6.05 44.81 6.13
782 790 4.383602 CGCCTCAAAACCACGCGG 62.384 66.667 12.47 0.00 39.20 6.46
783 791 2.182614 ATTCGCCTCAAAACCACGCG 62.183 55.000 3.53 3.53 44.00 6.01
784 792 0.454452 GATTCGCCTCAAAACCACGC 60.454 55.000 0.00 0.00 0.00 5.34
785 793 0.168128 GGATTCGCCTCAAAACCACG 59.832 55.000 0.00 0.00 0.00 4.94
786 794 1.068541 GTGGATTCGCCTCAAAACCAC 60.069 52.381 0.00 0.00 39.20 4.16
787 795 1.243902 GTGGATTCGCCTCAAAACCA 58.756 50.000 0.00 0.00 37.63 3.67
788 796 0.168128 CGTGGATTCGCCTCAAAACC 59.832 55.000 0.00 0.00 37.63 3.27
789 797 0.168128 CCGTGGATTCGCCTCAAAAC 59.832 55.000 0.00 0.00 37.63 2.43
790 798 0.958382 CCCGTGGATTCGCCTCAAAA 60.958 55.000 0.00 0.00 37.63 2.44
791 799 1.376683 CCCGTGGATTCGCCTCAAA 60.377 57.895 0.00 0.00 37.63 2.69
792 800 2.267642 CCCGTGGATTCGCCTCAA 59.732 61.111 0.00 0.00 37.63 3.02
793 801 3.781307 CCCCGTGGATTCGCCTCA 61.781 66.667 0.00 0.00 37.63 3.86
794 802 4.547367 CCCCCGTGGATTCGCCTC 62.547 72.222 0.00 0.00 37.63 4.70
796 804 4.851179 GACCCCCGTGGATTCGCC 62.851 72.222 0.00 0.00 38.00 5.54
797 805 4.851179 GGACCCCCGTGGATTCGC 62.851 72.222 0.00 0.00 38.00 4.70
798 806 3.395702 TGGACCCCCGTGGATTCG 61.396 66.667 0.00 0.00 38.00 3.34
799 807 2.271173 GTGGACCCCCGTGGATTC 59.729 66.667 0.00 0.00 38.00 2.52
800 808 3.712907 CGTGGACCCCCGTGGATT 61.713 66.667 0.00 0.00 38.00 3.01
813 821 2.279252 CGGGAGTAATCCGCGTGG 60.279 66.667 9.28 9.28 41.07 4.94
828 836 1.408702 CATGGTTTATTCCCCTTGCGG 59.591 52.381 0.00 0.00 0.00 5.69
829 837 1.202405 GCATGGTTTATTCCCCTTGCG 60.202 52.381 0.00 0.00 40.62 4.85
830 838 1.138859 GGCATGGTTTATTCCCCTTGC 59.861 52.381 7.74 7.74 45.99 4.01
831 839 1.762370 GGGCATGGTTTATTCCCCTTG 59.238 52.381 0.00 0.00 36.34 3.61
832 840 1.364328 TGGGCATGGTTTATTCCCCTT 59.636 47.619 0.00 0.00 41.16 3.95
833 841 1.014804 TGGGCATGGTTTATTCCCCT 58.985 50.000 0.00 0.00 41.16 4.79
834 842 1.119684 GTGGGCATGGTTTATTCCCC 58.880 55.000 0.00 0.00 41.16 4.81
835 843 1.119684 GGTGGGCATGGTTTATTCCC 58.880 55.000 0.00 0.00 42.11 3.97
836 844 1.119684 GGGTGGGCATGGTTTATTCC 58.880 55.000 0.00 0.00 0.00 3.01
837 845 1.859302 TGGGTGGGCATGGTTTATTC 58.141 50.000 0.00 0.00 0.00 1.75
838 846 2.504996 CAATGGGTGGGCATGGTTTATT 59.495 45.455 0.00 0.00 0.00 1.40
839 847 2.117865 CAATGGGTGGGCATGGTTTAT 58.882 47.619 0.00 0.00 0.00 1.40
840 848 1.077828 TCAATGGGTGGGCATGGTTTA 59.922 47.619 0.00 0.00 0.00 2.01
841 849 0.178909 TCAATGGGTGGGCATGGTTT 60.179 50.000 0.00 0.00 0.00 3.27
842 850 0.043032 ATCAATGGGTGGGCATGGTT 59.957 50.000 0.00 0.00 0.00 3.67
843 851 0.397535 GATCAATGGGTGGGCATGGT 60.398 55.000 0.00 0.00 0.00 3.55
844 852 0.397394 TGATCAATGGGTGGGCATGG 60.397 55.000 0.00 0.00 0.00 3.66
845 853 1.712056 ATGATCAATGGGTGGGCATG 58.288 50.000 0.00 0.00 0.00 4.06
846 854 2.820485 GCTATGATCAATGGGTGGGCAT 60.820 50.000 0.00 0.00 0.00 4.40
847 855 1.479205 GCTATGATCAATGGGTGGGCA 60.479 52.381 0.00 0.00 0.00 5.36
848 856 1.202976 AGCTATGATCAATGGGTGGGC 60.203 52.381 0.00 0.00 0.00 5.36
849 857 2.374504 AGAGCTATGATCAATGGGTGGG 59.625 50.000 0.00 0.00 0.00 4.61
850 858 3.784511 AGAGCTATGATCAATGGGTGG 57.215 47.619 0.00 0.00 0.00 4.61
851 859 5.614308 TGTAAGAGCTATGATCAATGGGTG 58.386 41.667 0.00 0.00 0.00 4.61
852 860 5.894298 TGTAAGAGCTATGATCAATGGGT 57.106 39.130 0.00 0.00 0.00 4.51
893 902 2.684374 TCATGGACGCATTTGAAGATGG 59.316 45.455 0.00 0.00 0.00 3.51
918 928 0.105246 AAAGACATTGCCAACCCCCA 60.105 50.000 0.00 0.00 0.00 4.96
935 946 6.607004 TGAGTTTCACAAAACCCCTAAAAA 57.393 33.333 0.00 0.00 44.87 1.94
938 949 5.659079 ACATTGAGTTTCACAAAACCCCTAA 59.341 36.000 0.00 0.00 44.87 2.69
945 956 4.560819 GCGTCAACATTGAGTTTCACAAAA 59.439 37.500 0.00 0.00 38.74 2.44
1047 1059 4.811557 GCGCAGTAGTCTATCTTTCCATTT 59.188 41.667 0.30 0.00 0.00 2.32
1110 1122 3.775661 GCCCTTTGCGCTAAATTTAGA 57.224 42.857 26.00 5.31 32.47 2.10
1154 1166 1.406614 CCACCTCCAGATTGTCAGAGC 60.407 57.143 0.00 0.00 0.00 4.09
1193 1205 1.004440 GCTTCCGCTGACTGTCCTT 60.004 57.895 5.17 0.00 0.00 3.36
1345 2073 8.090788 TCACTAATAGGCTCCTCAAACTAATT 57.909 34.615 0.00 0.00 0.00 1.40
1349 2077 6.374417 TTTCACTAATAGGCTCCTCAAACT 57.626 37.500 0.00 0.00 0.00 2.66
1446 2174 2.291465 CGCAGAAATATGGGTGGTCATG 59.709 50.000 0.00 0.00 0.00 3.07
1447 2175 2.092429 ACGCAGAAATATGGGTGGTCAT 60.092 45.455 0.00 0.00 43.86 3.06
1448 2176 1.280710 ACGCAGAAATATGGGTGGTCA 59.719 47.619 0.00 0.00 43.86 4.02
1449 2177 2.038387 ACGCAGAAATATGGGTGGTC 57.962 50.000 0.00 0.00 43.86 4.02
1450 2178 2.365582 GAACGCAGAAATATGGGTGGT 58.634 47.619 0.00 0.00 44.66 4.16
1451 2179 1.330521 CGAACGCAGAAATATGGGTGG 59.669 52.381 0.00 0.00 44.66 4.61
1452 2180 1.268032 GCGAACGCAGAAATATGGGTG 60.268 52.381 14.26 0.00 44.66 4.61
1454 2182 1.299541 AGCGAACGCAGAAATATGGG 58.700 50.000 20.66 0.00 44.88 4.00
1455 2183 4.518217 CTTAAGCGAACGCAGAAATATGG 58.482 43.478 20.66 0.00 44.88 2.74
1456 2184 3.962481 GCTTAAGCGAACGCAGAAATATG 59.038 43.478 20.66 8.83 44.88 1.78
1457 2185 3.002348 GGCTTAAGCGAACGCAGAAATAT 59.998 43.478 20.80 0.00 44.88 1.28
1458 2186 2.350498 GGCTTAAGCGAACGCAGAAATA 59.650 45.455 20.80 3.83 44.88 1.40
1459 2187 1.130561 GGCTTAAGCGAACGCAGAAAT 59.869 47.619 20.80 4.70 44.88 2.17
1460 2188 0.515564 GGCTTAAGCGAACGCAGAAA 59.484 50.000 20.80 10.43 44.88 2.52
1461 2189 1.296056 GGGCTTAAGCGAACGCAGAA 61.296 55.000 20.80 12.49 44.88 3.02
1462 2190 1.740296 GGGCTTAAGCGAACGCAGA 60.740 57.895 20.80 5.54 44.88 4.26
1463 2191 1.741770 AGGGCTTAAGCGAACGCAG 60.742 57.895 20.80 10.71 44.88 5.18
1464 2192 2.032634 CAGGGCTTAAGCGAACGCA 61.033 57.895 20.80 0.00 44.88 5.24
1465 2193 2.785258 CAGGGCTTAAGCGAACGC 59.215 61.111 20.80 11.31 43.26 4.84
1472 2200 1.523758 AAGAACACGCAGGGCTTAAG 58.476 50.000 0.00 0.00 0.00 1.85
1473 2201 1.877443 GAAAGAACACGCAGGGCTTAA 59.123 47.619 0.00 0.00 0.00 1.85
1475 2203 1.507141 CGAAAGAACACGCAGGGCTT 61.507 55.000 0.00 0.00 0.00 4.35
1478 2206 2.966309 GCCGAAAGAACACGCAGGG 61.966 63.158 0.00 0.00 0.00 4.45
1480 2208 2.170985 CGCCGAAAGAACACGCAG 59.829 61.111 0.00 0.00 0.00 5.18
1482 2210 2.170273 GTCGCCGAAAGAACACGC 59.830 61.111 0.00 0.00 0.00 5.34
1487 2215 1.167781 GGTTTGGGTCGCCGAAAGAA 61.168 55.000 6.37 0.00 32.22 2.52
1490 2218 2.595172 GGGTTTGGGTCGCCGAAA 60.595 61.111 0.00 2.82 0.00 3.46
1491 2219 4.646877 GGGGTTTGGGTCGCCGAA 62.647 66.667 0.00 0.00 0.00 4.30
1494 2222 4.735358 GGAGGGGTTTGGGTCGCC 62.735 72.222 0.00 0.00 38.04 5.54
1496 2224 0.251608 ATTTGGAGGGGTTTGGGTCG 60.252 55.000 0.00 0.00 0.00 4.79
1501 2229 0.887933 CGTGGATTTGGAGGGGTTTG 59.112 55.000 0.00 0.00 0.00 2.93
1502 2230 0.898326 GCGTGGATTTGGAGGGGTTT 60.898 55.000 0.00 0.00 0.00 3.27
1504 2232 2.355115 GCGTGGATTTGGAGGGGT 59.645 61.111 0.00 0.00 0.00 4.95
1505 2233 2.824041 CGCGTGGATTTGGAGGGG 60.824 66.667 0.00 0.00 0.00 4.79
1506 2234 2.813226 TTCCGCGTGGATTTGGAGGG 62.813 60.000 20.33 0.00 45.91 4.30
1507 2235 1.376683 TTCCGCGTGGATTTGGAGG 60.377 57.895 20.33 0.00 45.91 4.30
1509 2237 0.609151 TAGTTCCGCGTGGATTTGGA 59.391 50.000 20.33 0.00 45.91 3.53
1510 2238 1.444836 TTAGTTCCGCGTGGATTTGG 58.555 50.000 20.33 0.00 45.91 3.28
1511 2239 2.675844 TGATTAGTTCCGCGTGGATTTG 59.324 45.455 20.33 0.00 45.91 2.32
1512 2240 2.676342 GTGATTAGTTCCGCGTGGATTT 59.324 45.455 20.33 12.52 45.91 2.17
1513 2241 2.277084 GTGATTAGTTCCGCGTGGATT 58.723 47.619 20.33 12.90 45.91 3.01
1515 2243 0.108520 GGTGATTAGTTCCGCGTGGA 60.109 55.000 15.21 15.21 44.61 4.02
1518 2246 0.175073 GAGGGTGATTAGTTCCGCGT 59.825 55.000 4.92 0.00 0.00 6.01
1519 2247 0.460311 AGAGGGTGATTAGTTCCGCG 59.540 55.000 0.00 0.00 0.00 6.46
1520 2248 2.546162 GCTAGAGGGTGATTAGTTCCGC 60.546 54.545 0.00 0.00 0.00 5.54
1521 2249 2.693591 TGCTAGAGGGTGATTAGTTCCG 59.306 50.000 0.00 0.00 0.00 4.30
1523 2251 3.181464 GGGTGCTAGAGGGTGATTAGTTC 60.181 52.174 0.00 0.00 0.00 3.01
1524 2252 2.772515 GGGTGCTAGAGGGTGATTAGTT 59.227 50.000 0.00 0.00 0.00 2.24
1525 2253 2.399580 GGGTGCTAGAGGGTGATTAGT 58.600 52.381 0.00 0.00 0.00 2.24
1527 2255 1.802553 GGGGTGCTAGAGGGTGATTA 58.197 55.000 0.00 0.00 0.00 1.75
1528 2256 1.338136 CGGGGTGCTAGAGGGTGATT 61.338 60.000 0.00 0.00 0.00 2.57
1529 2257 1.762460 CGGGGTGCTAGAGGGTGAT 60.762 63.158 0.00 0.00 0.00 3.06
1531 2259 2.683933 ACGGGGTGCTAGAGGGTG 60.684 66.667 0.00 0.00 0.00 4.61
1532 2260 2.683933 CACGGGGTGCTAGAGGGT 60.684 66.667 0.00 0.00 0.00 4.34
1533 2261 3.470888 CCACGGGGTGCTAGAGGG 61.471 72.222 0.00 0.00 31.34 4.30
1534 2262 1.961180 CTTCCACGGGGTGCTAGAGG 61.961 65.000 2.12 0.00 34.93 3.69
1535 2263 1.517832 CTTCCACGGGGTGCTAGAG 59.482 63.158 2.12 0.00 34.93 2.43
1536 2264 1.987855 CCTTCCACGGGGTGCTAGA 60.988 63.158 2.12 0.00 34.93 2.43
1538 2266 0.912487 ATTCCTTCCACGGGGTGCTA 60.912 55.000 2.12 0.00 34.93 3.49
1539 2267 2.198304 GATTCCTTCCACGGGGTGCT 62.198 60.000 2.12 0.00 34.93 4.40
1540 2268 1.749258 GATTCCTTCCACGGGGTGC 60.749 63.158 2.12 0.00 34.93 5.01
1542 2270 3.411700 GGATTCCTTCCACGGGGT 58.588 61.111 2.12 0.00 44.74 4.95
1550 2278 1.523938 CTTCGCCCGGGATTCCTTC 60.524 63.158 29.31 2.60 0.00 3.46
1551 2279 2.590092 CTTCGCCCGGGATTCCTT 59.410 61.111 29.31 0.00 0.00 3.36
1552 2280 4.176752 GCTTCGCCCGGGATTCCT 62.177 66.667 29.31 0.00 0.00 3.36
1564 2292 1.424493 GAGATGGGAGTTGCGCTTCG 61.424 60.000 9.73 0.00 38.26 3.79
1565 2293 0.107945 AGAGATGGGAGTTGCGCTTC 60.108 55.000 9.73 3.60 34.89 3.86
1566 2294 0.107945 GAGAGATGGGAGTTGCGCTT 60.108 55.000 9.73 0.00 0.00 4.68
1567 2295 1.519719 GAGAGATGGGAGTTGCGCT 59.480 57.895 9.73 0.00 0.00 5.92
1568 2296 1.522580 GGAGAGATGGGAGTTGCGC 60.523 63.158 0.00 0.00 0.00 6.09
1569 2297 1.144936 GGGAGAGATGGGAGTTGCG 59.855 63.158 0.00 0.00 0.00 4.85
1570 2298 1.144936 CGGGAGAGATGGGAGTTGC 59.855 63.158 0.00 0.00 0.00 4.17
1571 2299 2.901975 TCGGGAGAGATGGGAGTTG 58.098 57.895 0.00 0.00 0.00 3.16
1872 2600 3.406595 CTTCCCTGCACCCCGATCC 62.407 68.421 0.00 0.00 0.00 3.36
1873 2601 2.190578 CTTCCCTGCACCCCGATC 59.809 66.667 0.00 0.00 0.00 3.69
1874 2602 3.411517 CCTTCCCTGCACCCCGAT 61.412 66.667 0.00 0.00 0.00 4.18
1878 2606 3.585525 GAACCCCTTCCCTGCACCC 62.586 68.421 0.00 0.00 0.00 4.61
1879 2607 2.035783 GAACCCCTTCCCTGCACC 59.964 66.667 0.00 0.00 0.00 5.01
1880 2608 1.603739 GTGAACCCCTTCCCTGCAC 60.604 63.158 0.00 0.00 0.00 4.57
1881 2609 1.774217 AGTGAACCCCTTCCCTGCA 60.774 57.895 0.00 0.00 0.00 4.41
1882 2610 1.002011 GAGTGAACCCCTTCCCTGC 60.002 63.158 0.00 0.00 0.00 4.85
1883 2611 0.771127 TTGAGTGAACCCCTTCCCTG 59.229 55.000 0.00 0.00 0.00 4.45
1884 2612 1.636003 GATTGAGTGAACCCCTTCCCT 59.364 52.381 0.00 0.00 0.00 4.20
1885 2613 1.341089 GGATTGAGTGAACCCCTTCCC 60.341 57.143 0.00 0.00 0.00 3.97
1886 2614 1.341089 GGGATTGAGTGAACCCCTTCC 60.341 57.143 0.00 0.00 36.65 3.46
1887 2615 1.636003 AGGGATTGAGTGAACCCCTTC 59.364 52.381 0.00 0.00 44.60 3.46
1888 2616 1.355720 CAGGGATTGAGTGAACCCCTT 59.644 52.381 0.00 0.00 44.60 3.95
1889 2617 3.521085 AGGGATTGAGTGAACCCCT 57.479 52.632 0.00 0.00 42.97 4.79
1890 2618 0.681243 GCAGGGATTGAGTGAACCCC 60.681 60.000 0.00 0.00 42.97 4.95
1891 2619 0.038166 TGCAGGGATTGAGTGAACCC 59.962 55.000 0.00 0.00 42.36 4.11
1892 2620 1.457346 CTGCAGGGATTGAGTGAACC 58.543 55.000 5.57 0.00 0.00 3.62
1893 2621 1.457346 CCTGCAGGGATTGAGTGAAC 58.543 55.000 26.14 0.00 37.23 3.18
1894 2622 3.963733 CCTGCAGGGATTGAGTGAA 57.036 52.632 26.14 0.00 37.23 3.18
1905 2633 1.225704 GAGGTCCAATCCCTGCAGG 59.774 63.158 26.87 26.87 30.60 4.85
1906 2634 1.225704 GGAGGTCCAATCCCTGCAG 59.774 63.158 6.78 6.78 39.97 4.41
1907 2635 0.044092 TAGGAGGTCCAATCCCTGCA 59.956 55.000 0.00 0.00 42.45 4.41
1908 2636 0.761802 CTAGGAGGTCCAATCCCTGC 59.238 60.000 0.00 0.00 40.47 4.85
1909 2637 1.765314 CACTAGGAGGTCCAATCCCTG 59.235 57.143 0.00 0.00 37.57 4.45
1910 2638 1.344496 CCACTAGGAGGTCCAATCCCT 60.344 57.143 0.00 0.00 37.57 4.20
1911 2639 1.132500 CCACTAGGAGGTCCAATCCC 58.868 60.000 0.00 0.00 37.57 3.85
1912 2640 2.176247 TCCACTAGGAGGTCCAATCC 57.824 55.000 0.00 0.00 39.61 3.01
1930 2658 6.677781 TGTTCGGTTCTCATGGATTTAATC 57.322 37.500 0.00 0.00 0.00 1.75
1931 2659 6.095440 CCTTGTTCGGTTCTCATGGATTTAAT 59.905 38.462 0.00 0.00 0.00 1.40
1932 2660 5.414454 CCTTGTTCGGTTCTCATGGATTTAA 59.586 40.000 0.00 0.00 0.00 1.52
1933 2661 4.941263 CCTTGTTCGGTTCTCATGGATTTA 59.059 41.667 0.00 0.00 0.00 1.40
1934 2662 3.758554 CCTTGTTCGGTTCTCATGGATTT 59.241 43.478 0.00 0.00 0.00 2.17
1935 2663 3.347216 CCTTGTTCGGTTCTCATGGATT 58.653 45.455 0.00 0.00 0.00 3.01
1936 2664 2.941415 GCCTTGTTCGGTTCTCATGGAT 60.941 50.000 0.00 0.00 0.00 3.41
1937 2665 1.610624 GCCTTGTTCGGTTCTCATGGA 60.611 52.381 0.00 0.00 0.00 3.41
1938 2666 0.804989 GCCTTGTTCGGTTCTCATGG 59.195 55.000 0.00 0.00 0.00 3.66
1939 2667 0.804989 GGCCTTGTTCGGTTCTCATG 59.195 55.000 0.00 0.00 0.00 3.07
1940 2668 0.693049 AGGCCTTGTTCGGTTCTCAT 59.307 50.000 0.00 0.00 0.00 2.90
1941 2669 1.001633 GTAGGCCTTGTTCGGTTCTCA 59.998 52.381 12.58 0.00 0.00 3.27
1942 2670 1.675116 GGTAGGCCTTGTTCGGTTCTC 60.675 57.143 12.58 0.00 0.00 2.87
1943 2671 0.323957 GGTAGGCCTTGTTCGGTTCT 59.676 55.000 12.58 0.00 0.00 3.01
1944 2672 1.017701 CGGTAGGCCTTGTTCGGTTC 61.018 60.000 12.58 0.00 0.00 3.62
1945 2673 1.004200 CGGTAGGCCTTGTTCGGTT 60.004 57.895 12.58 0.00 0.00 4.44
1946 2674 2.660802 CGGTAGGCCTTGTTCGGT 59.339 61.111 12.58 0.00 0.00 4.69
1947 2675 2.125269 CCGGTAGGCCTTGTTCGG 60.125 66.667 12.58 15.66 0.00 4.30
1948 2676 1.153628 CTCCGGTAGGCCTTGTTCG 60.154 63.158 12.58 10.16 37.47 3.95
1949 2677 1.449778 GCTCCGGTAGGCCTTGTTC 60.450 63.158 12.58 0.00 37.47 3.18
1950 2678 2.669240 GCTCCGGTAGGCCTTGTT 59.331 61.111 12.58 0.00 37.47 2.83
1951 2679 3.400054 GGCTCCGGTAGGCCTTGT 61.400 66.667 12.58 0.00 44.97 3.16
1976 2704 5.496556 TGGGCCGATAATCCTGTTATAATG 58.503 41.667 0.00 0.00 0.00 1.90
1979 2707 4.020573 CACTGGGCCGATAATCCTGTTATA 60.021 45.833 0.00 0.00 31.75 0.98
1991 2719 1.528824 CTTGATCCACTGGGCCGAT 59.471 57.895 0.00 0.00 0.00 4.18
1992 2720 2.989639 CTTGATCCACTGGGCCGA 59.010 61.111 0.00 0.00 0.00 5.54
1993 2721 2.825836 GCTTGATCCACTGGGCCG 60.826 66.667 0.00 0.00 0.00 6.13
1994 2722 0.899717 TTTGCTTGATCCACTGGGCC 60.900 55.000 0.00 0.00 0.00 5.80
1997 2725 1.068055 GTGCTTTGCTTGATCCACTGG 60.068 52.381 0.00 0.00 0.00 4.00
2167 2931 3.813443 TCCTTCTCAAATCATAGCCAGC 58.187 45.455 0.00 0.00 0.00 4.85
2173 2937 5.126061 GCTTGGCTTTCCTTCTCAAATCATA 59.874 40.000 0.00 0.00 0.00 2.15
2230 2994 4.085357 TGGCAAGAGCTAGACAGAAAAA 57.915 40.909 0.00 0.00 41.70 1.94
2232 2996 3.769739 TTGGCAAGAGCTAGACAGAAA 57.230 42.857 0.00 0.00 41.70 2.52
2234 2998 3.668447 CTTTTGGCAAGAGCTAGACAGA 58.332 45.455 4.71 0.00 41.70 3.41
2235 2999 2.161211 GCTTTTGGCAAGAGCTAGACAG 59.839 50.000 29.33 0.82 41.70 3.51
2236 3000 2.154462 GCTTTTGGCAAGAGCTAGACA 58.846 47.619 29.33 0.00 41.70 3.41
2237 3001 1.129437 CGCTTTTGGCAAGAGCTAGAC 59.871 52.381 31.80 10.70 41.91 2.59
2238 3002 1.001974 TCGCTTTTGGCAAGAGCTAGA 59.998 47.619 31.80 22.77 41.91 2.43
2239 3003 1.129437 GTCGCTTTTGGCAAGAGCTAG 59.871 52.381 31.80 21.19 41.91 3.42
2240 3004 1.156736 GTCGCTTTTGGCAAGAGCTA 58.843 50.000 31.80 22.88 41.91 3.32
2241 3005 0.819259 TGTCGCTTTTGGCAAGAGCT 60.819 50.000 31.80 0.00 41.91 4.09
2293 3057 2.845752 TAGATTGCCGGGACACGCAC 62.846 60.000 2.18 0.00 42.52 5.34
2302 3066 3.623906 ATGAGATGGATAGATTGCCGG 57.376 47.619 0.00 0.00 0.00 6.13
2317 3081 4.694982 TGAGCGCAAAGATACAAAATGAGA 59.305 37.500 11.47 0.00 0.00 3.27
2321 3085 5.565592 TGATGAGCGCAAAGATACAAAAT 57.434 34.783 11.47 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.