Multiple sequence alignment - TraesCS1D01G139300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G139300 chr1D 100.000 8225 0 0 1 8225 191799706 191791482 0.000000e+00 15189.0
1 TraesCS1D01G139300 chr1B 96.194 5701 153 25 788 6466 265292328 265297986 0.000000e+00 9267.0
2 TraesCS1D01G139300 chr1B 93.914 1331 52 22 6381 7692 265297985 265299305 0.000000e+00 1982.0
3 TraesCS1D01G139300 chr1B 91.176 306 14 6 7904 8202 265299624 265299923 3.580000e-108 403.0
4 TraesCS1D01G139300 chr1B 84.571 350 32 16 1 329 265641527 265641179 2.210000e-85 327.0
5 TraesCS1D01G139300 chr1B 94.313 211 8 3 7696 7904 265299339 265299547 3.700000e-83 320.0
6 TraesCS1D01G139300 chr1A 96.518 2929 84 12 503 3426 237520472 237517557 0.000000e+00 4828.0
7 TraesCS1D01G139300 chr1A 95.706 2166 68 11 3971 6126 237513214 237511064 0.000000e+00 3461.0
8 TraesCS1D01G139300 chr1A 96.184 760 29 0 6125 6884 237510982 237510223 0.000000e+00 1243.0
9 TraesCS1D01G139300 chr1A 97.735 618 12 2 6883 7500 237510189 237509574 0.000000e+00 1062.0
10 TraesCS1D01G139300 chr1A 99.742 387 1 0 3588 3974 237513692 237513306 0.000000e+00 710.0
11 TraesCS1D01G139300 chr1A 87.622 307 23 6 7904 8202 237508852 237508553 7.900000e-90 342.0
12 TraesCS1D01G139300 chr1A 85.260 346 30 14 2 329 237714060 237713718 3.680000e-88 337.0
13 TraesCS1D01G139300 chr1A 92.925 212 6 3 7496 7699 237509494 237509284 4.830000e-77 300.0
14 TraesCS1D01G139300 chr1A 97.368 114 3 0 3480 3593 237517565 237517452 2.340000e-45 195.0
15 TraesCS1D01G139300 chr7D 83.521 267 29 10 4192 4454 108501211 108501466 1.380000e-57 235.0
16 TraesCS1D01G139300 chr7D 89.583 48 4 1 6525 6571 356446906 356446953 8.910000e-05 60.2
17 TraesCS1D01G139300 chr7A 78.409 264 44 12 6523 6778 55018179 55017921 8.540000e-35 159.0
18 TraesCS1D01G139300 chr7A 82.895 152 19 7 6523 6670 55009306 55009158 6.700000e-26 130.0
19 TraesCS1D01G139300 chr5D 91.304 46 4 0 6526 6571 450531838 450531793 6.890000e-06 63.9
20 TraesCS1D01G139300 chr5A 91.304 46 4 0 6526 6571 569708551 569708506 6.890000e-06 63.9
21 TraesCS1D01G139300 chr6A 94.872 39 1 1 6534 6571 486888027 486887989 8.910000e-05 60.2
22 TraesCS1D01G139300 chr4D 94.872 39 1 1 6534 6571 320820788 320820750 8.910000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G139300 chr1D 191791482 191799706 8224 True 15189.000 15189 100.00000 1 8225 1 chr1D.!!$R1 8224
1 TraesCS1D01G139300 chr1B 265292328 265299923 7595 False 2993.000 9267 93.89925 788 8202 4 chr1B.!!$F1 7414
2 TraesCS1D01G139300 chr1A 237508553 237520472 11919 True 1517.625 4828 95.47500 503 8202 8 chr1A.!!$R2 7699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 459 0.104120 TGACACAACAGACCAGGACG 59.896 55.000 0.00 0.00 0.00 4.79 F
629 630 0.327924 AATGGGTGAAGTGGCGATGA 59.672 50.000 0.00 0.00 0.00 2.92 F
639 640 0.535335 GTGGCGATGAAGGTAGTGGA 59.465 55.000 0.00 0.00 0.00 4.02 F
1439 1443 1.332997 GCATACTTCCTGCAGCATGTC 59.667 52.381 8.66 0.09 39.46 3.06 F
2178 2190 1.153086 ACGCGTAGTAGGTCCCGAT 60.153 57.895 11.67 0.00 0.00 4.18 F
2772 2785 3.330110 TCCTTTTCCGGTTATGGGTTACA 59.670 43.478 0.00 0.00 0.00 2.41 F
3496 3510 2.644798 ACTACAGCCCTGTTTCCTTGAT 59.355 45.455 6.21 0.00 41.83 2.57 F
5040 8929 0.512952 CTACCTCAAGTTGTGCGCAC 59.487 55.000 33.11 33.11 0.00 5.34 F
5048 8937 1.094785 AGTTGTGCGCACTTGACTTT 58.905 45.000 37.59 17.20 0.00 2.66 F
5624 9516 1.493022 TGTAACTTTCACCCAGCCAGT 59.507 47.619 0.00 0.00 0.00 4.00 F
6536 10595 2.807967 CACTGGTCTCTTTGATTCGCAA 59.192 45.455 0.00 0.00 33.88 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1745 1749 0.604578 GGTCAGCAAGTGTACCCGTA 59.395 55.000 0.00 0.0 0.00 4.02 R
2014 2026 1.001487 TGCAATGACAAAGCAGAACCG 60.001 47.619 1.46 0.0 33.75 4.44 R
2178 2190 2.348660 CGCAATCCACGGTTACCTTTA 58.651 47.619 0.00 0.0 0.00 1.85 R
2773 2786 0.387929 GCCTCCGAACCGTATCATCA 59.612 55.000 0.00 0.0 0.00 3.07 R
3237 3251 2.734606 CCGATTTGTTACAGACGCTTCA 59.265 45.455 0.00 0.0 0.00 3.02 R
4386 8261 2.932614 CTGTTCTCCTAATTCTGCACCG 59.067 50.000 0.00 0.0 0.00 4.94 R
5048 8937 1.202758 AGAACCAAACAGATGCCACGA 60.203 47.619 0.00 0.0 0.00 4.35 R
6860 10919 0.530744 GGCTCACCATGTCGAGTACA 59.469 55.000 9.61 0.0 43.86 2.90 R
6936 11030 2.405892 CGAAGGGTTTTCTTGTGCAG 57.594 50.000 0.00 0.0 0.00 4.41 R
7166 11260 2.159085 GGAATAGGAGGTGAGGTTCGTG 60.159 54.545 0.00 0.0 0.00 4.35 R
8009 12430 1.020437 GCAGGGTAATCAGCTTCAGC 58.980 55.000 0.00 0.0 42.49 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.873732 GGACATGACTAAGTTTGAAGATGC 58.126 41.667 0.00 0.00 0.00 3.91
24 25 5.645497 GGACATGACTAAGTTTGAAGATGCT 59.355 40.000 0.00 0.00 0.00 3.79
25 26 6.818644 GGACATGACTAAGTTTGAAGATGCTA 59.181 38.462 0.00 0.00 0.00 3.49
26 27 7.334421 GGACATGACTAAGTTTGAAGATGCTAA 59.666 37.037 0.00 0.00 0.00 3.09
27 28 8.034058 ACATGACTAAGTTTGAAGATGCTAAC 57.966 34.615 0.00 0.00 0.00 2.34
28 29 7.661437 ACATGACTAAGTTTGAAGATGCTAACA 59.339 33.333 0.00 0.00 0.00 2.41
29 30 7.421530 TGACTAAGTTTGAAGATGCTAACAC 57.578 36.000 0.00 0.00 0.00 3.32
30 31 6.145534 TGACTAAGTTTGAAGATGCTAACACG 59.854 38.462 0.00 0.00 0.00 4.49
31 32 5.989777 ACTAAGTTTGAAGATGCTAACACGT 59.010 36.000 0.00 0.00 0.00 4.49
32 33 4.992381 AGTTTGAAGATGCTAACACGTC 57.008 40.909 0.00 0.00 0.00 4.34
33 34 4.632153 AGTTTGAAGATGCTAACACGTCT 58.368 39.130 0.00 0.00 37.52 4.18
34 35 4.686554 AGTTTGAAGATGCTAACACGTCTC 59.313 41.667 0.00 0.00 34.80 3.36
35 36 4.521130 TTGAAGATGCTAACACGTCTCT 57.479 40.909 0.00 0.00 34.80 3.10
36 37 5.638596 TTGAAGATGCTAACACGTCTCTA 57.361 39.130 0.00 0.00 34.80 2.43
37 38 5.638596 TGAAGATGCTAACACGTCTCTAA 57.361 39.130 0.00 0.00 34.80 2.10
38 39 5.399858 TGAAGATGCTAACACGTCTCTAAC 58.600 41.667 0.00 0.00 34.80 2.34
39 40 5.048294 TGAAGATGCTAACACGTCTCTAACA 60.048 40.000 0.00 0.00 34.80 2.41
40 41 5.584253 AGATGCTAACACGTCTCTAACAT 57.416 39.130 0.00 0.00 29.75 2.71
41 42 6.694877 AGATGCTAACACGTCTCTAACATA 57.305 37.500 0.00 0.00 29.75 2.29
42 43 7.278461 AGATGCTAACACGTCTCTAACATAT 57.722 36.000 0.00 0.00 29.75 1.78
43 44 7.364200 AGATGCTAACACGTCTCTAACATATC 58.636 38.462 0.00 0.00 29.75 1.63
44 45 5.828747 TGCTAACACGTCTCTAACATATCC 58.171 41.667 0.00 0.00 0.00 2.59
45 46 5.358725 TGCTAACACGTCTCTAACATATCCA 59.641 40.000 0.00 0.00 0.00 3.41
46 47 6.040504 TGCTAACACGTCTCTAACATATCCAT 59.959 38.462 0.00 0.00 0.00 3.41
47 48 7.229907 TGCTAACACGTCTCTAACATATCCATA 59.770 37.037 0.00 0.00 0.00 2.74
48 49 8.080417 GCTAACACGTCTCTAACATATCCATAA 58.920 37.037 0.00 0.00 0.00 1.90
51 52 9.832445 AACACGTCTCTAACATATCCATAATTT 57.168 29.630 0.00 0.00 0.00 1.82
52 53 9.832445 ACACGTCTCTAACATATCCATAATTTT 57.168 29.630 0.00 0.00 0.00 1.82
138 139 8.950403 GTCAAGCGACAATTCTTATTTTTAGT 57.050 30.769 0.00 0.00 42.13 2.24
139 140 9.394477 GTCAAGCGACAATTCTTATTTTTAGTT 57.606 29.630 0.00 0.00 42.13 2.24
140 141 9.393249 TCAAGCGACAATTCTTATTTTTAGTTG 57.607 29.630 0.00 0.00 0.00 3.16
141 142 9.180678 CAAGCGACAATTCTTATTTTTAGTTGT 57.819 29.630 0.00 0.00 0.00 3.32
142 143 9.744468 AAGCGACAATTCTTATTTTTAGTTGTT 57.256 25.926 0.00 0.00 0.00 2.83
143 144 9.744468 AGCGACAATTCTTATTTTTAGTTGTTT 57.256 25.926 0.00 0.00 0.00 2.83
169 170 8.893563 TTTGAATTCCAGATAATACCAAAGGT 57.106 30.769 2.27 0.00 40.16 3.50
170 171 7.880160 TGAATTCCAGATAATACCAAAGGTG 57.120 36.000 2.27 0.00 36.19 4.00
171 172 7.410174 TGAATTCCAGATAATACCAAAGGTGT 58.590 34.615 2.27 0.00 36.19 4.16
172 173 8.553153 TGAATTCCAGATAATACCAAAGGTGTA 58.447 33.333 2.27 0.00 36.19 2.90
173 174 8.747538 AATTCCAGATAATACCAAAGGTGTAC 57.252 34.615 0.00 0.00 36.19 2.90
174 175 5.909477 TCCAGATAATACCAAAGGTGTACG 58.091 41.667 0.00 0.00 36.19 3.67
175 176 5.657745 TCCAGATAATACCAAAGGTGTACGA 59.342 40.000 0.00 0.00 36.19 3.43
176 177 6.154877 TCCAGATAATACCAAAGGTGTACGAA 59.845 38.462 0.00 0.00 36.19 3.85
177 178 6.479001 CCAGATAATACCAAAGGTGTACGAAG 59.521 42.308 0.00 0.00 36.19 3.79
178 179 7.262772 CAGATAATACCAAAGGTGTACGAAGA 58.737 38.462 0.00 0.00 36.19 2.87
179 180 7.762615 CAGATAATACCAAAGGTGTACGAAGAA 59.237 37.037 0.00 0.00 36.19 2.52
180 181 8.316214 AGATAATACCAAAGGTGTACGAAGAAA 58.684 33.333 0.00 0.00 36.19 2.52
181 182 8.851541 ATAATACCAAAGGTGTACGAAGAAAA 57.148 30.769 0.00 0.00 36.19 2.29
182 183 7.754851 AATACCAAAGGTGTACGAAGAAAAT 57.245 32.000 0.00 0.00 36.19 1.82
183 184 8.851541 AATACCAAAGGTGTACGAAGAAAATA 57.148 30.769 0.00 0.00 36.19 1.40
184 185 8.851541 ATACCAAAGGTGTACGAAGAAAATAA 57.148 30.769 0.00 0.00 36.19 1.40
185 186 7.571080 ACCAAAGGTGTACGAAGAAAATAAA 57.429 32.000 0.00 0.00 32.98 1.40
186 187 7.998580 ACCAAAGGTGTACGAAGAAAATAAAA 58.001 30.769 0.00 0.00 32.98 1.52
187 188 8.132995 ACCAAAGGTGTACGAAGAAAATAAAAG 58.867 33.333 0.00 0.00 32.98 2.27
188 189 8.347035 CCAAAGGTGTACGAAGAAAATAAAAGA 58.653 33.333 0.00 0.00 0.00 2.52
189 190 9.724839 CAAAGGTGTACGAAGAAAATAAAAGAA 57.275 29.630 0.00 0.00 0.00 2.52
190 191 9.726232 AAAGGTGTACGAAGAAAATAAAAGAAC 57.274 29.630 0.00 0.00 0.00 3.01
191 192 8.441312 AGGTGTACGAAGAAAATAAAAGAACA 57.559 30.769 0.00 0.00 0.00 3.18
192 193 9.063615 AGGTGTACGAAGAAAATAAAAGAACAT 57.936 29.630 0.00 0.00 0.00 2.71
193 194 9.673454 GGTGTACGAAGAAAATAAAAGAACATT 57.327 29.630 0.00 0.00 0.00 2.71
198 199 9.463443 ACGAAGAAAATAAAAGAACATTTGGAG 57.537 29.630 0.00 0.00 0.00 3.86
199 200 8.915654 CGAAGAAAATAAAAGAACATTTGGAGG 58.084 33.333 0.00 0.00 0.00 4.30
200 201 9.764363 GAAGAAAATAAAAGAACATTTGGAGGT 57.236 29.630 0.00 0.00 0.00 3.85
209 210 9.546428 AAAAGAACATTTGGAGGTAAATTGAAG 57.454 29.630 0.00 0.00 0.00 3.02
210 211 6.691508 AGAACATTTGGAGGTAAATTGAAGC 58.308 36.000 0.00 0.00 0.00 3.86
211 212 5.405935 ACATTTGGAGGTAAATTGAAGCC 57.594 39.130 0.00 0.00 0.00 4.35
212 213 4.837860 ACATTTGGAGGTAAATTGAAGCCA 59.162 37.500 0.00 0.00 0.00 4.75
213 214 5.047092 ACATTTGGAGGTAAATTGAAGCCAG 60.047 40.000 0.00 0.00 0.00 4.85
214 215 2.446435 TGGAGGTAAATTGAAGCCAGC 58.554 47.619 0.00 0.00 0.00 4.85
215 216 2.224992 TGGAGGTAAATTGAAGCCAGCA 60.225 45.455 0.00 0.00 0.00 4.41
216 217 2.424956 GGAGGTAAATTGAAGCCAGCAG 59.575 50.000 0.00 0.00 0.00 4.24
217 218 3.347216 GAGGTAAATTGAAGCCAGCAGA 58.653 45.455 0.00 0.00 0.00 4.26
218 219 3.350833 AGGTAAATTGAAGCCAGCAGAG 58.649 45.455 0.00 0.00 0.00 3.35
219 220 3.009473 AGGTAAATTGAAGCCAGCAGAGA 59.991 43.478 0.00 0.00 0.00 3.10
220 221 3.758554 GGTAAATTGAAGCCAGCAGAGAA 59.241 43.478 0.00 0.00 0.00 2.87
221 222 3.930634 AAATTGAAGCCAGCAGAGAAC 57.069 42.857 0.00 0.00 0.00 3.01
222 223 1.831580 ATTGAAGCCAGCAGAGAACC 58.168 50.000 0.00 0.00 0.00 3.62
223 224 0.250901 TTGAAGCCAGCAGAGAACCC 60.251 55.000 0.00 0.00 0.00 4.11
224 225 1.743252 GAAGCCAGCAGAGAACCCG 60.743 63.158 0.00 0.00 0.00 5.28
225 226 3.909086 AAGCCAGCAGAGAACCCGC 62.909 63.158 0.00 0.00 0.00 6.13
226 227 4.400961 GCCAGCAGAGAACCCGCT 62.401 66.667 0.00 0.00 36.10 5.52
229 230 4.400961 AGCAGAGAACCCGCTGGC 62.401 66.667 0.00 0.00 40.05 4.85
230 231 4.704833 GCAGAGAACCCGCTGGCA 62.705 66.667 0.00 0.00 40.05 4.92
231 232 2.032528 CAGAGAACCCGCTGGCAA 59.967 61.111 0.00 0.00 36.70 4.52
232 233 1.600636 CAGAGAACCCGCTGGCAAA 60.601 57.895 0.00 0.00 36.70 3.68
233 234 1.302832 AGAGAACCCGCTGGCAAAG 60.303 57.895 0.00 0.00 33.59 2.77
245 246 4.344237 GCAAAGCTAGGCCATGGT 57.656 55.556 14.67 0.00 0.00 3.55
246 247 3.494850 GCAAAGCTAGGCCATGGTA 57.505 52.632 14.67 0.00 0.00 3.25
247 248 1.312815 GCAAAGCTAGGCCATGGTAG 58.687 55.000 14.67 9.29 0.00 3.18
248 249 1.408822 GCAAAGCTAGGCCATGGTAGT 60.409 52.381 14.67 0.41 0.00 2.73
249 250 2.565841 CAAAGCTAGGCCATGGTAGTC 58.434 52.381 14.67 4.92 0.00 2.59
250 251 1.132500 AAGCTAGGCCATGGTAGTCC 58.868 55.000 14.67 5.75 0.00 3.85
251 252 0.764752 AGCTAGGCCATGGTAGTCCC 60.765 60.000 14.67 5.33 0.00 4.46
259 260 2.745037 TGGTAGTCCCACAACGCC 59.255 61.111 0.00 0.00 38.72 5.68
260 261 1.839747 TGGTAGTCCCACAACGCCT 60.840 57.895 0.00 0.00 38.72 5.52
261 262 0.542467 TGGTAGTCCCACAACGCCTA 60.542 55.000 0.00 0.00 38.72 3.93
262 263 0.175073 GGTAGTCCCACAACGCCTAG 59.825 60.000 0.00 0.00 0.00 3.02
263 264 0.175073 GTAGTCCCACAACGCCTAGG 59.825 60.000 3.67 3.67 0.00 3.02
264 265 0.251922 TAGTCCCACAACGCCTAGGT 60.252 55.000 11.31 0.00 0.00 3.08
265 266 1.375523 GTCCCACAACGCCTAGGTG 60.376 63.158 21.04 21.04 44.94 4.00
266 267 2.746277 CCCACAACGCCTAGGTGC 60.746 66.667 22.51 1.12 42.61 5.01
267 268 2.031919 CCACAACGCCTAGGTGCA 59.968 61.111 22.51 0.00 42.61 4.57
268 269 1.377202 CCACAACGCCTAGGTGCAT 60.377 57.895 22.51 8.83 42.61 3.96
269 270 0.960364 CCACAACGCCTAGGTGCATT 60.960 55.000 22.51 7.31 42.61 3.56
270 271 0.168788 CACAACGCCTAGGTGCATTG 59.831 55.000 22.51 20.52 42.61 2.82
271 272 1.137404 CAACGCCTAGGTGCATTGC 59.863 57.895 22.51 0.46 0.00 3.56
272 273 2.046285 AACGCCTAGGTGCATTGCC 61.046 57.895 22.51 0.00 0.00 4.52
273 274 2.124570 CGCCTAGGTGCATTGCCT 60.125 61.111 9.93 0.00 40.00 4.75
274 275 1.146041 CGCCTAGGTGCATTGCCTA 59.854 57.895 9.93 1.91 37.54 3.93
287 288 3.798511 GCCTAGGCACCCTGGACC 61.799 72.222 29.33 0.00 41.49 4.46
288 289 2.285368 CCTAGGCACCCTGGACCA 60.285 66.667 0.00 0.00 33.74 4.02
289 290 1.694169 CCTAGGCACCCTGGACCAT 60.694 63.158 0.00 0.00 33.74 3.55
290 291 1.528824 CTAGGCACCCTGGACCATG 59.471 63.158 0.00 0.00 33.74 3.66
291 292 1.987807 CTAGGCACCCTGGACCATGG 61.988 65.000 11.19 11.19 33.74 3.66
292 293 2.484868 TAGGCACCCTGGACCATGGA 62.485 60.000 21.47 0.00 34.61 3.41
293 294 2.044946 GCACCCTGGACCATGGAC 60.045 66.667 21.47 13.12 0.00 4.02
294 295 2.905996 GCACCCTGGACCATGGACA 61.906 63.158 21.47 15.80 0.00 4.02
295 296 1.002134 CACCCTGGACCATGGACAC 60.002 63.158 21.47 8.46 0.00 3.67
296 297 2.231380 ACCCTGGACCATGGACACC 61.231 63.158 21.47 18.16 0.00 4.16
297 298 1.925455 CCCTGGACCATGGACACCT 60.925 63.158 21.47 0.00 0.00 4.00
298 299 0.620410 CCCTGGACCATGGACACCTA 60.620 60.000 21.47 8.57 0.00 3.08
299 300 0.541863 CCTGGACCATGGACACCTAC 59.458 60.000 21.47 0.00 0.00 3.18
300 301 0.175760 CTGGACCATGGACACCTACG 59.824 60.000 21.47 7.83 0.00 3.51
301 302 0.543410 TGGACCATGGACACCTACGT 60.543 55.000 21.47 0.00 0.00 3.57
302 303 1.272592 TGGACCATGGACACCTACGTA 60.273 52.381 21.47 0.00 0.00 3.57
303 304 1.135721 GGACCATGGACACCTACGTAC 59.864 57.143 21.47 0.00 0.00 3.67
304 305 1.820519 GACCATGGACACCTACGTACA 59.179 52.381 21.47 0.00 33.20 2.90
305 306 1.547372 ACCATGGACACCTACGTACAC 59.453 52.381 21.47 0.00 30.82 2.90
306 307 1.822990 CCATGGACACCTACGTACACT 59.177 52.381 5.56 0.00 30.82 3.55
307 308 3.018856 CCATGGACACCTACGTACACTA 58.981 50.000 5.56 0.00 30.82 2.74
308 309 3.066342 CCATGGACACCTACGTACACTAG 59.934 52.174 5.56 0.00 30.82 2.57
309 310 2.715046 TGGACACCTACGTACACTAGG 58.285 52.381 10.77 10.77 37.40 3.02
310 311 2.040278 TGGACACCTACGTACACTAGGT 59.960 50.000 11.85 11.85 44.20 3.08
311 312 3.263170 TGGACACCTACGTACACTAGGTA 59.737 47.826 15.72 2.26 41.88 3.08
312 313 4.080356 TGGACACCTACGTACACTAGGTAT 60.080 45.833 15.72 7.80 41.88 2.73
313 314 4.513318 GGACACCTACGTACACTAGGTATC 59.487 50.000 15.72 14.50 41.88 2.24
314 315 4.455606 ACACCTACGTACACTAGGTATCC 58.544 47.826 15.72 0.00 41.88 2.59
315 316 3.817647 CACCTACGTACACTAGGTATCCC 59.182 52.174 15.72 0.00 41.88 3.85
316 317 3.181439 ACCTACGTACACTAGGTATCCCC 60.181 52.174 14.90 0.00 41.97 4.81
317 318 1.972872 ACGTACACTAGGTATCCCCG 58.027 55.000 0.00 0.00 38.74 5.73
318 319 1.490490 ACGTACACTAGGTATCCCCGA 59.510 52.381 0.00 0.00 38.74 5.14
319 320 1.876156 CGTACACTAGGTATCCCCGAC 59.124 57.143 0.00 0.00 38.74 4.79
320 321 1.876156 GTACACTAGGTATCCCCGACG 59.124 57.143 0.00 0.00 38.74 5.12
321 322 0.257039 ACACTAGGTATCCCCGACGT 59.743 55.000 0.00 0.00 38.74 4.34
322 323 0.950116 CACTAGGTATCCCCGACGTC 59.050 60.000 5.18 5.18 38.74 4.34
323 324 0.179006 ACTAGGTATCCCCGACGTCC 60.179 60.000 10.58 0.00 38.74 4.79
324 325 0.110104 CTAGGTATCCCCGACGTCCT 59.890 60.000 10.58 1.33 38.74 3.85
325 326 0.109342 TAGGTATCCCCGACGTCCTC 59.891 60.000 10.58 0.00 38.74 3.71
326 327 2.198969 GGTATCCCCGACGTCCTCC 61.199 68.421 10.58 0.00 0.00 4.30
327 328 1.152798 GTATCCCCGACGTCCTCCT 60.153 63.158 10.58 0.00 0.00 3.69
328 329 0.754587 GTATCCCCGACGTCCTCCTT 60.755 60.000 10.58 0.00 0.00 3.36
329 330 0.846015 TATCCCCGACGTCCTCCTTA 59.154 55.000 10.58 0.00 0.00 2.69
330 331 0.187851 ATCCCCGACGTCCTCCTTAT 59.812 55.000 10.58 0.00 0.00 1.73
331 332 0.846015 TCCCCGACGTCCTCCTTATA 59.154 55.000 10.58 0.00 0.00 0.98
332 333 1.202855 TCCCCGACGTCCTCCTTATAG 60.203 57.143 10.58 0.00 0.00 1.31
333 334 1.202855 CCCCGACGTCCTCCTTATAGA 60.203 57.143 10.58 0.00 0.00 1.98
334 335 1.878734 CCCGACGTCCTCCTTATAGAC 59.121 57.143 10.58 0.00 0.00 2.59
335 336 1.878734 CCGACGTCCTCCTTATAGACC 59.121 57.143 10.58 0.00 0.00 3.85
336 337 2.486907 CCGACGTCCTCCTTATAGACCT 60.487 54.545 10.58 0.00 0.00 3.85
337 338 3.212685 CGACGTCCTCCTTATAGACCTT 58.787 50.000 10.58 0.00 0.00 3.50
338 339 3.631227 CGACGTCCTCCTTATAGACCTTT 59.369 47.826 10.58 0.00 0.00 3.11
339 340 4.097589 CGACGTCCTCCTTATAGACCTTTT 59.902 45.833 10.58 0.00 0.00 2.27
340 341 5.393896 CGACGTCCTCCTTATAGACCTTTTT 60.394 44.000 10.58 0.00 0.00 1.94
362 363 6.814076 TTTTTGCGTTATCATTTCACGTTT 57.186 29.167 0.00 0.00 36.29 3.60
363 364 6.427300 TTTTGCGTTATCATTTCACGTTTC 57.573 33.333 0.00 0.00 36.29 2.78
364 365 3.727518 TGCGTTATCATTTCACGTTTCG 58.272 40.909 0.00 0.00 36.29 3.46
365 366 3.429207 TGCGTTATCATTTCACGTTTCGA 59.571 39.130 0.00 0.00 36.29 3.71
366 367 4.013397 GCGTTATCATTTCACGTTTCGAG 58.987 43.478 0.00 0.00 36.29 4.04
367 368 4.565229 CGTTATCATTTCACGTTTCGAGG 58.435 43.478 0.00 0.00 0.00 4.63
368 369 4.331962 GTTATCATTTCACGTTTCGAGGC 58.668 43.478 0.00 0.00 0.00 4.70
369 370 0.787787 TCATTTCACGTTTCGAGGCG 59.212 50.000 8.76 8.76 0.00 5.52
370 371 0.787787 CATTTCACGTTTCGAGGCGA 59.212 50.000 15.72 0.00 0.00 5.54
371 372 1.393539 CATTTCACGTTTCGAGGCGAT 59.606 47.619 15.72 0.00 35.23 4.58
372 373 1.065358 TTTCACGTTTCGAGGCGATC 58.935 50.000 15.72 0.00 35.23 3.69
373 374 0.242825 TTCACGTTTCGAGGCGATCT 59.757 50.000 15.72 0.00 35.23 2.75
374 375 0.242825 TCACGTTTCGAGGCGATCTT 59.757 50.000 15.72 0.00 35.23 2.40
375 376 1.068474 CACGTTTCGAGGCGATCTTT 58.932 50.000 15.72 0.00 35.23 2.52
376 377 1.068474 ACGTTTCGAGGCGATCTTTG 58.932 50.000 15.72 0.00 35.23 2.77
377 378 1.068474 CGTTTCGAGGCGATCTTTGT 58.932 50.000 4.98 0.00 35.23 2.83
378 379 1.459592 CGTTTCGAGGCGATCTTTGTT 59.540 47.619 4.98 0.00 35.23 2.83
379 380 2.096417 CGTTTCGAGGCGATCTTTGTTT 60.096 45.455 4.98 0.00 35.23 2.83
380 381 3.122278 CGTTTCGAGGCGATCTTTGTTTA 59.878 43.478 4.98 0.00 35.23 2.01
381 382 4.392216 GTTTCGAGGCGATCTTTGTTTAC 58.608 43.478 0.00 0.00 35.23 2.01
382 383 3.306917 TCGAGGCGATCTTTGTTTACA 57.693 42.857 0.00 0.00 0.00 2.41
383 384 3.655486 TCGAGGCGATCTTTGTTTACAA 58.345 40.909 0.00 0.00 0.00 2.41
384 385 3.430895 TCGAGGCGATCTTTGTTTACAAC 59.569 43.478 0.00 0.00 35.28 3.32
385 386 3.424433 CGAGGCGATCTTTGTTTACAACC 60.424 47.826 0.00 0.00 35.28 3.77
386 387 2.482721 AGGCGATCTTTGTTTACAACCG 59.517 45.455 0.00 0.00 35.28 4.44
387 388 2.224784 GGCGATCTTTGTTTACAACCGT 59.775 45.455 0.00 0.00 35.28 4.83
388 389 3.223157 GCGATCTTTGTTTACAACCGTG 58.777 45.455 0.00 0.00 35.28 4.94
389 390 3.059461 GCGATCTTTGTTTACAACCGTGA 60.059 43.478 0.00 0.00 35.28 4.35
390 391 4.451557 CGATCTTTGTTTACAACCGTGAC 58.548 43.478 0.00 0.00 35.28 3.67
391 392 4.609783 CGATCTTTGTTTACAACCGTGACC 60.610 45.833 0.00 0.00 35.28 4.02
392 393 2.944349 TCTTTGTTTACAACCGTGACCC 59.056 45.455 0.00 0.00 35.28 4.46
393 394 1.297664 TTGTTTACAACCGTGACCCG 58.702 50.000 0.00 0.00 0.00 5.28
402 403 4.001248 CGTGACCCGGTACTACCA 57.999 61.111 0.00 0.00 38.47 3.25
403 404 2.266070 CGTGACCCGGTACTACCAA 58.734 57.895 0.00 0.00 38.47 3.67
404 405 0.602562 CGTGACCCGGTACTACCAAA 59.397 55.000 0.00 0.00 38.47 3.28
405 406 1.403249 CGTGACCCGGTACTACCAAAG 60.403 57.143 0.00 0.00 38.47 2.77
406 407 1.066645 GTGACCCGGTACTACCAAAGG 60.067 57.143 0.00 5.42 38.47 3.11
407 408 1.203162 TGACCCGGTACTACCAAAGGA 60.203 52.381 0.00 0.00 38.47 3.36
408 409 1.205655 GACCCGGTACTACCAAAGGAC 59.794 57.143 0.00 3.78 38.47 3.85
409 410 0.174162 CCCGGTACTACCAAAGGACG 59.826 60.000 0.00 0.00 40.38 4.79
410 411 1.176527 CCGGTACTACCAAAGGACGA 58.823 55.000 6.06 0.00 40.38 4.20
411 412 1.133790 CCGGTACTACCAAAGGACGAG 59.866 57.143 6.06 0.00 40.38 4.18
412 413 1.468736 CGGTACTACCAAAGGACGAGC 60.469 57.143 6.06 0.00 40.38 5.03
413 414 1.823610 GGTACTACCAAAGGACGAGCT 59.176 52.381 0.00 0.00 40.38 4.09
414 415 2.233186 GGTACTACCAAAGGACGAGCTT 59.767 50.000 0.00 0.00 40.38 3.74
415 416 2.745515 ACTACCAAAGGACGAGCTTC 57.254 50.000 0.00 0.00 0.00 3.86
416 417 1.067776 ACTACCAAAGGACGAGCTTCG 60.068 52.381 0.00 0.00 46.93 3.79
417 418 0.245539 TACCAAAGGACGAGCTTCGG 59.754 55.000 9.75 0.00 45.59 4.30
418 419 1.292223 CCAAAGGACGAGCTTCGGA 59.708 57.895 9.75 0.00 45.59 4.55
419 420 0.737715 CCAAAGGACGAGCTTCGGAG 60.738 60.000 9.75 0.00 45.59 4.63
420 421 0.737715 CAAAGGACGAGCTTCGGAGG 60.738 60.000 9.75 0.00 45.59 4.30
421 422 2.508586 AAAGGACGAGCTTCGGAGGC 62.509 60.000 3.59 3.59 45.59 4.70
422 423 3.760035 GGACGAGCTTCGGAGGCA 61.760 66.667 14.82 0.00 45.59 4.75
423 424 2.261671 GACGAGCTTCGGAGGCAA 59.738 61.111 14.82 0.00 45.59 4.52
424 425 1.153549 GACGAGCTTCGGAGGCAAT 60.154 57.895 14.82 0.00 45.59 3.56
425 426 1.424493 GACGAGCTTCGGAGGCAATG 61.424 60.000 14.82 5.87 45.59 2.82
426 427 2.817423 CGAGCTTCGGAGGCAATGC 61.817 63.158 14.82 0.00 36.00 3.56
427 428 2.817423 GAGCTTCGGAGGCAATGCG 61.817 63.158 14.82 0.00 45.34 4.73
428 429 3.880846 GCTTCGGAGGCAATGCGG 61.881 66.667 7.28 0.00 43.91 5.69
429 430 2.436646 CTTCGGAGGCAATGCGGT 60.437 61.111 0.00 0.00 43.91 5.68
430 431 2.435938 TTCGGAGGCAATGCGGTC 60.436 61.111 0.00 0.00 43.91 4.79
431 432 4.812476 TCGGAGGCAATGCGGTCG 62.812 66.667 0.00 2.77 43.91 4.79
446 447 2.187163 TCGCGTTGGGTGACACAA 59.813 55.556 5.77 0.00 0.00 3.33
447 448 2.174969 TCGCGTTGGGTGACACAAC 61.175 57.895 20.21 20.21 43.52 3.32
448 449 2.465299 CGCGTTGGGTGACACAACA 61.465 57.895 27.88 4.64 46.41 3.33
449 450 1.355210 GCGTTGGGTGACACAACAG 59.645 57.895 27.88 20.83 46.41 3.16
450 451 1.092921 GCGTTGGGTGACACAACAGA 61.093 55.000 27.88 0.00 46.41 3.41
451 452 0.655733 CGTTGGGTGACACAACAGAC 59.344 55.000 27.88 4.40 46.41 3.51
452 453 1.021968 GTTGGGTGACACAACAGACC 58.978 55.000 24.57 0.00 45.62 3.85
453 454 0.621082 TTGGGTGACACAACAGACCA 59.379 50.000 8.08 1.31 0.00 4.02
454 455 0.180171 TGGGTGACACAACAGACCAG 59.820 55.000 8.08 0.00 0.00 4.00
455 456 0.535102 GGGTGACACAACAGACCAGG 60.535 60.000 8.08 0.00 0.00 4.45
456 457 0.468226 GGTGACACAACAGACCAGGA 59.532 55.000 8.08 0.00 0.00 3.86
457 458 1.583054 GTGACACAACAGACCAGGAC 58.417 55.000 0.00 0.00 0.00 3.85
458 459 0.104120 TGACACAACAGACCAGGACG 59.896 55.000 0.00 0.00 0.00 4.79
459 460 0.600255 GACACAACAGACCAGGACGG 60.600 60.000 0.00 0.00 42.50 4.79
469 470 1.600638 CCAGGACGGTCCTTAACCC 59.399 63.158 26.78 0.00 46.91 4.11
470 471 1.217244 CAGGACGGTCCTTAACCCG 59.783 63.158 26.78 11.02 46.91 5.28
474 475 2.507769 CGGTCCTTAACCCGTCGC 60.508 66.667 0.00 0.00 46.27 5.19
475 476 2.507769 GGTCCTTAACCCGTCGCG 60.508 66.667 0.00 0.00 42.85 5.87
477 478 2.990967 TCCTTAACCCGTCGCGGT 60.991 61.111 6.13 0.00 46.80 5.68
478 479 2.507769 CCTTAACCCGTCGCGGTC 60.508 66.667 6.13 0.00 46.80 4.79
479 480 2.259204 CTTAACCCGTCGCGGTCA 59.741 61.111 6.13 0.00 46.80 4.02
480 481 1.153706 CTTAACCCGTCGCGGTCAT 60.154 57.895 6.13 5.57 46.80 3.06
481 482 1.143969 CTTAACCCGTCGCGGTCATC 61.144 60.000 6.13 0.00 46.80 2.92
482 483 2.561549 TTAACCCGTCGCGGTCATCC 62.562 60.000 6.13 0.00 46.80 3.51
494 495 1.941325 GGTCATCCCGAACTGACATC 58.059 55.000 11.52 0.00 42.83 3.06
495 496 1.482593 GGTCATCCCGAACTGACATCT 59.517 52.381 11.52 0.00 42.83 2.90
496 497 2.693591 GGTCATCCCGAACTGACATCTA 59.306 50.000 11.52 0.00 42.83 1.98
497 498 3.491104 GGTCATCCCGAACTGACATCTAC 60.491 52.174 11.52 0.00 42.83 2.59
498 499 3.130516 GTCATCCCGAACTGACATCTACA 59.869 47.826 6.40 0.00 41.13 2.74
499 500 3.381590 TCATCCCGAACTGACATCTACAG 59.618 47.826 0.00 0.00 40.68 2.74
500 501 2.100197 TCCCGAACTGACATCTACAGG 58.900 52.381 0.00 0.00 39.38 4.00
501 502 1.137086 CCCGAACTGACATCTACAGGG 59.863 57.143 0.00 0.00 39.38 4.45
519 520 4.467084 TGCGTCGCCTCCATTCCC 62.467 66.667 15.88 0.00 0.00 3.97
573 574 2.182842 GCATGATCCGTCAGCACCC 61.183 63.158 0.00 0.00 37.87 4.61
577 578 3.391665 GATCCGTCAGCACCCTGGG 62.392 68.421 12.28 12.28 39.61 4.45
586 587 2.285368 CACCCTGGGTAGCTGGGA 60.285 66.667 20.09 0.00 43.47 4.37
592 593 2.369001 GGGTAGCTGGGAGAGGGT 59.631 66.667 0.00 0.00 0.00 4.34
607 608 4.450053 GAGAGGGTGAGAGATTGAAATGG 58.550 47.826 0.00 0.00 0.00 3.16
611 612 4.044571 AGGGTGAGAGATTGAAATGGGAAA 59.955 41.667 0.00 0.00 0.00 3.13
629 630 0.327924 AATGGGTGAAGTGGCGATGA 59.672 50.000 0.00 0.00 0.00 2.92
639 640 0.535335 GTGGCGATGAAGGTAGTGGA 59.465 55.000 0.00 0.00 0.00 4.02
654 655 3.314541 AGTGGACTAAGCCTTACAACG 57.685 47.619 0.00 0.00 0.00 4.10
657 658 3.185797 GTGGACTAAGCCTTACAACGTTG 59.814 47.826 26.20 26.20 0.00 4.10
658 659 3.069872 TGGACTAAGCCTTACAACGTTGA 59.930 43.478 33.66 15.02 0.00 3.18
668 669 2.817538 ACAACGTTGAGTTTGTTCGG 57.182 45.000 33.66 3.74 42.02 4.30
669 670 2.348660 ACAACGTTGAGTTTGTTCGGA 58.651 42.857 33.66 0.00 42.02 4.55
670 671 2.743126 ACAACGTTGAGTTTGTTCGGAA 59.257 40.909 33.66 0.00 42.02 4.30
691 692 1.507630 CCGTGGTTGATGTGGCATG 59.492 57.895 0.00 0.00 0.00 4.06
717 718 6.798482 TCCAATGCTTTAAGATATGTGCTTG 58.202 36.000 0.00 0.00 0.00 4.01
738 739 7.549134 TGCTTGTTATCTGACGATCAATAAGTT 59.451 33.333 0.00 0.00 0.00 2.66
739 740 9.031360 GCTTGTTATCTGACGATCAATAAGTTA 57.969 33.333 0.00 0.00 0.00 2.24
754 755 8.492673 TCAATAAGTTATTTGCTCGAGATTGT 57.507 30.769 18.75 1.11 0.00 2.71
763 764 5.687770 TTGCTCGAGATTGTCAAAAATCA 57.312 34.783 18.75 0.00 38.74 2.57
764 765 5.687770 TGCTCGAGATTGTCAAAAATCAA 57.312 34.783 18.75 0.00 38.74 2.57
765 766 6.070897 TGCTCGAGATTGTCAAAAATCAAA 57.929 33.333 18.75 0.00 38.74 2.69
766 767 6.680810 TGCTCGAGATTGTCAAAAATCAAAT 58.319 32.000 18.75 0.00 38.74 2.32
771 772 7.804600 TCGAGATTGTCAAAAATCAAATGTCAG 59.195 33.333 0.00 0.00 38.74 3.51
773 774 9.252962 GAGATTGTCAAAAATCAAATGTCAGTT 57.747 29.630 0.00 0.00 38.74 3.16
775 776 7.769272 TTGTCAAAAATCAAATGTCAGTTCC 57.231 32.000 0.00 0.00 0.00 3.62
1439 1443 1.332997 GCATACTTCCTGCAGCATGTC 59.667 52.381 8.66 0.09 39.46 3.06
1540 1544 6.018507 GGATTGTTATGATTGCTTTGCATTCC 60.019 38.462 10.57 0.00 38.76 3.01
1611 1615 4.440880 CTCTGAAGTCCATTGCCTTAGAG 58.559 47.826 0.00 0.00 0.00 2.43
1621 1625 4.889409 CCATTGCCTTAGAGCTTTTATGGA 59.111 41.667 12.53 0.00 33.73 3.41
1745 1749 4.162040 AGCTGTGCTGCTTATCCTTTAT 57.838 40.909 0.00 0.00 40.93 1.40
1784 1788 2.285220 CCATCGAAATGTTGCGAGGTAG 59.715 50.000 6.98 0.00 40.14 3.18
2178 2190 1.153086 ACGCGTAGTAGGTCCCGAT 60.153 57.895 11.67 0.00 0.00 4.18
2772 2785 3.330110 TCCTTTTCCGGTTATGGGTTACA 59.670 43.478 0.00 0.00 0.00 2.41
2773 2786 4.018233 TCCTTTTCCGGTTATGGGTTACAT 60.018 41.667 0.00 0.00 43.68 2.29
2774 2787 4.097286 CCTTTTCCGGTTATGGGTTACATG 59.903 45.833 0.00 0.00 40.82 3.21
3236 3250 5.799827 TTTCCCCCTGTTTGTTCATAAAG 57.200 39.130 0.00 0.00 0.00 1.85
3237 3251 4.463050 TCCCCCTGTTTGTTCATAAAGT 57.537 40.909 0.00 0.00 0.00 2.66
3441 3455 3.130693 AGCCTGTCGTACTTGTATTCCTC 59.869 47.826 0.00 0.00 0.00 3.71
3496 3510 2.644798 ACTACAGCCCTGTTTCCTTGAT 59.355 45.455 6.21 0.00 41.83 2.57
3974 7849 6.541278 GGTAAGTTTGTCCCTAATCATGTACC 59.459 42.308 0.00 0.00 0.00 3.34
3992 7867 7.670979 TCATGTACCTAACAACTGTTCTACCTA 59.329 37.037 0.00 0.00 42.70 3.08
4028 7903 7.610305 TGTTTCCTTCATAAGTTCCCTAATCAC 59.390 37.037 0.00 0.00 0.00 3.06
4181 8056 6.404293 GGACATATGGCATTTTTACGTGAACT 60.404 38.462 11.56 0.00 0.00 3.01
4219 8094 9.681062 TTATTCTGTAATCCCCAGTCTTTAAAG 57.319 33.333 9.04 9.04 0.00 1.85
4233 8108 8.846211 CCAGTCTTTAAAGTTATGACAAGGAAA 58.154 33.333 14.74 0.00 31.42 3.13
4417 8292 7.984050 CAGAATTAGGAGAACAGCTAATCTTCA 59.016 37.037 8.52 0.00 0.00 3.02
4505 8385 5.835113 TTTATTGTAGGGCTGAATGCTTC 57.165 39.130 0.00 0.00 42.39 3.86
4506 8386 2.877097 TTGTAGGGCTGAATGCTTCA 57.123 45.000 0.00 0.00 42.39 3.02
4507 8387 2.113860 TGTAGGGCTGAATGCTTCAC 57.886 50.000 0.00 0.00 42.39 3.18
4508 8388 1.630369 TGTAGGGCTGAATGCTTCACT 59.370 47.619 0.00 0.00 42.39 3.41
4509 8389 2.040278 TGTAGGGCTGAATGCTTCACTT 59.960 45.455 0.00 0.00 42.39 3.16
4832 8721 7.836685 TCCTGTAATTGATATGTGGGCTTAAAA 59.163 33.333 0.00 0.00 0.00 1.52
4933 8822 4.022849 GTCACTTTGGAGCTTATTGTGCTT 60.023 41.667 0.00 0.00 41.30 3.91
4971 8860 5.464965 TTCTGTGAACTCGAACAAGAAAC 57.535 39.130 0.00 0.00 0.00 2.78
4973 8862 4.804139 TCTGTGAACTCGAACAAGAAACTC 59.196 41.667 0.00 0.00 0.00 3.01
4984 8873 2.708325 ACAAGAAACTCTCTGCTTCCCT 59.292 45.455 0.00 0.00 33.37 4.20
5040 8929 0.512952 CTACCTCAAGTTGTGCGCAC 59.487 55.000 33.11 33.11 0.00 5.34
5048 8937 1.094785 AGTTGTGCGCACTTGACTTT 58.905 45.000 37.59 17.20 0.00 2.66
5248 9139 4.191033 TGTCAACCAAATTCATCCATGC 57.809 40.909 0.00 0.00 0.00 4.06
5264 9155 6.321181 TCATCCATGCAAGTTATAACCCTTTC 59.679 38.462 12.05 0.00 0.00 2.62
5431 9323 7.917730 TTGATTCATGGATTATCAATGGGTT 57.082 32.000 9.48 0.00 34.36 4.11
5474 9366 5.236911 TCTTGCAATGGAATTTTTGCTGTTC 59.763 36.000 17.24 0.00 46.50 3.18
5624 9516 1.493022 TGTAACTTTCACCCAGCCAGT 59.507 47.619 0.00 0.00 0.00 4.00
5651 9543 4.196971 AGGGCTTTTATTACACGACCATC 58.803 43.478 0.00 0.00 0.00 3.51
5690 9582 6.536582 CACGTTCTGTTCTCATAATCCTGATT 59.463 38.462 0.00 0.00 34.93 2.57
5844 9736 4.418013 TTTAAGCATGTGAACCATCGTG 57.582 40.909 0.00 0.00 0.00 4.35
5878 9770 5.232838 GTGGTTCTGCATTTGTCTTTTCTTG 59.767 40.000 0.00 0.00 0.00 3.02
5892 9784 6.597672 TGTCTTTTCTTGCACCGATTATATGT 59.402 34.615 0.00 0.00 0.00 2.29
6202 10177 5.711976 AGATTTAACATGTCCACTTTCCCAG 59.288 40.000 0.00 0.00 0.00 4.45
6263 10238 8.094798 TCTTATTTTGCATTCTTTCTGTACGT 57.905 30.769 0.00 0.00 0.00 3.57
6536 10595 2.807967 CACTGGTCTCTTTGATTCGCAA 59.192 45.455 0.00 0.00 33.88 4.85
6618 10677 9.677567 GATCTTACAGCATTTTTGTCTTGTTTA 57.322 29.630 0.00 0.00 0.00 2.01
6774 10833 9.667107 TGACATAGAAAAATTCGTTAGGATTCT 57.333 29.630 0.00 0.00 34.02 2.40
6928 11022 7.933215 ATCATTTGAGATCATGTCTTGTGAA 57.067 32.000 0.00 0.00 37.29 3.18
6929 11023 7.137490 TCATTTGAGATCATGTCTTGTGAAC 57.863 36.000 0.00 0.00 37.29 3.18
6936 11030 7.547019 TGAGATCATGTCTTGTGAACTCATAAC 59.453 37.037 10.70 0.00 44.99 1.89
6990 11084 7.272084 GTCTGACATGTATGTTTCTGAAAATGC 59.728 37.037 4.09 5.66 41.95 3.56
7574 11752 8.032045 TGTTATGTATCGGGGGAAGTTAAATA 57.968 34.615 0.00 0.00 0.00 1.40
7581 11759 4.225492 TCGGGGGAAGTTAAATATGTCACA 59.775 41.667 0.00 0.00 0.00 3.58
7752 11977 4.086025 CGATCGATTCAGAGTCGCTTTTAC 60.086 45.833 10.26 0.00 38.88 2.01
7756 11981 4.265556 CGATTCAGAGTCGCTTTTACGATT 59.734 41.667 1.97 0.00 45.06 3.34
7764 11989 4.386049 AGTCGCTTTTACGATTGAGTGAAG 59.614 41.667 0.00 0.00 45.06 3.02
7805 12030 3.262660 AGAGATGAGTGGTGCATGAAGAA 59.737 43.478 0.00 0.00 0.00 2.52
7825 12050 2.341846 ATCTTGTCACACGGTGGTTT 57.658 45.000 13.48 0.00 33.87 3.27
7827 12052 3.263489 TCTTGTCACACGGTGGTTTTA 57.737 42.857 13.48 0.00 33.87 1.52
7835 12062 3.249080 CACACGGTGGTTTTAGTAGGTTG 59.751 47.826 13.48 0.00 0.00 3.77
7952 12366 2.750948 TCACGAGCTTAAGTTGGTCAC 58.249 47.619 4.01 0.00 32.79 3.67
7965 12379 2.121291 TGGTCACAACTGCAGAAACA 57.879 45.000 23.35 6.10 0.00 2.83
7966 12380 2.653726 TGGTCACAACTGCAGAAACAT 58.346 42.857 23.35 0.00 0.00 2.71
7967 12381 3.814625 TGGTCACAACTGCAGAAACATA 58.185 40.909 23.35 0.00 0.00 2.29
7973 12394 4.943705 CACAACTGCAGAAACATATACCCT 59.056 41.667 23.35 0.00 0.00 4.34
8009 12430 1.526575 ATTGCACCAACCGCTCCAAG 61.527 55.000 0.00 0.00 0.00 3.61
8010 12431 4.043200 GCACCAACCGCTCCAAGC 62.043 66.667 0.00 0.00 38.02 4.01
8011 12432 2.281761 CACCAACCGCTCCAAGCT 60.282 61.111 0.00 0.00 39.60 3.74
8012 12433 2.281761 ACCAACCGCTCCAAGCTG 60.282 61.111 0.00 0.00 39.60 4.24
8013 12434 2.032528 CCAACCGCTCCAAGCTGA 59.967 61.111 0.00 0.00 39.60 4.26
8014 12435 1.600636 CCAACCGCTCCAAGCTGAA 60.601 57.895 0.00 0.00 39.60 3.02
8015 12436 1.580845 CCAACCGCTCCAAGCTGAAG 61.581 60.000 0.00 0.00 39.60 3.02
8016 12437 1.968540 AACCGCTCCAAGCTGAAGC 60.969 57.895 5.41 5.41 39.60 3.86
8089 12510 3.898482 AGGGCCTTCCATTGTGTAATAC 58.102 45.455 0.00 0.00 38.24 1.89
8099 12520 5.709631 TCCATTGTGTAATACTGTTGCACAT 59.290 36.000 9.63 0.19 42.77 3.21
8151 12572 4.384247 GCGAGAACCTGAAGATTCGATATG 59.616 45.833 0.00 0.00 0.00 1.78
8190 12611 2.247699 TAGTGGCTTGAGGGCTCTAA 57.752 50.000 0.00 0.00 41.40 2.10
8191 12612 1.589414 AGTGGCTTGAGGGCTCTAAT 58.411 50.000 0.00 0.00 41.44 1.73
8194 12615 3.718956 AGTGGCTTGAGGGCTCTAATAAT 59.281 43.478 0.00 0.00 41.44 1.28
8196 12617 4.276926 GTGGCTTGAGGGCTCTAATAATTG 59.723 45.833 0.00 0.00 41.48 2.32
8198 12619 4.464947 GCTTGAGGGCTCTAATAATTGGT 58.535 43.478 0.00 0.00 0.00 3.67
8199 12620 4.889995 GCTTGAGGGCTCTAATAATTGGTT 59.110 41.667 0.00 0.00 0.00 3.67
8200 12621 5.009110 GCTTGAGGGCTCTAATAATTGGTTC 59.991 44.000 0.00 0.00 0.00 3.62
8201 12622 5.708736 TGAGGGCTCTAATAATTGGTTCA 57.291 39.130 0.00 0.00 0.00 3.18
8203 12624 6.672593 TGAGGGCTCTAATAATTGGTTCAAT 58.327 36.000 0.00 0.00 35.39 2.57
8204 12625 7.811282 TGAGGGCTCTAATAATTGGTTCAATA 58.189 34.615 0.00 0.00 32.43 1.90
8205 12626 8.448008 TGAGGGCTCTAATAATTGGTTCAATAT 58.552 33.333 0.00 0.00 32.43 1.28
8206 12627 8.641498 AGGGCTCTAATAATTGGTTCAATATG 57.359 34.615 0.00 0.00 32.43 1.78
8207 12628 8.227507 AGGGCTCTAATAATTGGTTCAATATGT 58.772 33.333 0.00 0.00 32.43 2.29
8208 12629 9.515226 GGGCTCTAATAATTGGTTCAATATGTA 57.485 33.333 0.00 0.00 32.43 2.29
8218 12639 7.737972 TTGGTTCAATATGTATAACATCGGG 57.262 36.000 0.00 0.00 39.88 5.14
8219 12640 6.234920 TGGTTCAATATGTATAACATCGGGG 58.765 40.000 0.00 0.00 39.88 5.73
8220 12641 5.646360 GGTTCAATATGTATAACATCGGGGG 59.354 44.000 0.00 0.00 39.88 5.40
8221 12642 4.839121 TCAATATGTATAACATCGGGGGC 58.161 43.478 0.00 0.00 39.88 5.80
8222 12643 4.534500 TCAATATGTATAACATCGGGGGCT 59.466 41.667 0.00 0.00 39.88 5.19
8223 12644 2.859165 ATGTATAACATCGGGGGCTG 57.141 50.000 0.00 0.00 32.38 4.85
8224 12645 1.502690 TGTATAACATCGGGGGCTGT 58.497 50.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.645497 AGCATCTTCAAACTTAGTCATGTCC 59.355 40.000 0.00 0.00 0.00 4.02
1 2 6.734104 AGCATCTTCAAACTTAGTCATGTC 57.266 37.500 0.00 0.00 0.00 3.06
2 3 7.661437 TGTTAGCATCTTCAAACTTAGTCATGT 59.339 33.333 0.00 0.00 0.00 3.21
3 4 7.959651 GTGTTAGCATCTTCAAACTTAGTCATG 59.040 37.037 0.00 0.00 0.00 3.07
4 5 7.148573 CGTGTTAGCATCTTCAAACTTAGTCAT 60.149 37.037 0.00 0.00 0.00 3.06
5 6 6.145534 CGTGTTAGCATCTTCAAACTTAGTCA 59.854 38.462 0.00 0.00 0.00 3.41
6 7 6.145696 ACGTGTTAGCATCTTCAAACTTAGTC 59.854 38.462 0.00 0.00 0.00 2.59
7 8 5.989777 ACGTGTTAGCATCTTCAAACTTAGT 59.010 36.000 0.00 0.00 0.00 2.24
8 9 6.366332 AGACGTGTTAGCATCTTCAAACTTAG 59.634 38.462 0.00 0.00 0.00 2.18
9 10 6.220930 AGACGTGTTAGCATCTTCAAACTTA 58.779 36.000 0.00 0.00 0.00 2.24
10 11 5.057149 AGACGTGTTAGCATCTTCAAACTT 58.943 37.500 0.00 0.00 0.00 2.66
11 12 4.632153 AGACGTGTTAGCATCTTCAAACT 58.368 39.130 0.00 0.00 0.00 2.66
12 13 4.686554 AGAGACGTGTTAGCATCTTCAAAC 59.313 41.667 0.00 0.00 0.00 2.93
13 14 4.883083 AGAGACGTGTTAGCATCTTCAAA 58.117 39.130 0.00 0.00 0.00 2.69
14 15 4.521130 AGAGACGTGTTAGCATCTTCAA 57.479 40.909 0.00 0.00 0.00 2.69
15 16 5.048294 TGTTAGAGACGTGTTAGCATCTTCA 60.048 40.000 0.00 0.00 0.00 3.02
16 17 5.399858 TGTTAGAGACGTGTTAGCATCTTC 58.600 41.667 0.00 0.00 0.00 2.87
17 18 5.386958 TGTTAGAGACGTGTTAGCATCTT 57.613 39.130 0.00 0.00 0.00 2.40
18 19 5.584253 ATGTTAGAGACGTGTTAGCATCT 57.416 39.130 0.00 0.00 0.00 2.90
19 20 6.583050 GGATATGTTAGAGACGTGTTAGCATC 59.417 42.308 0.00 0.00 0.00 3.91
20 21 6.040504 TGGATATGTTAGAGACGTGTTAGCAT 59.959 38.462 0.00 1.40 0.00 3.79
21 22 5.358725 TGGATATGTTAGAGACGTGTTAGCA 59.641 40.000 0.00 0.00 0.00 3.49
22 23 5.828747 TGGATATGTTAGAGACGTGTTAGC 58.171 41.667 0.00 0.00 0.00 3.09
25 26 9.832445 AAATTATGGATATGTTAGAGACGTGTT 57.168 29.630 0.00 0.00 0.00 3.32
26 27 9.832445 AAAATTATGGATATGTTAGAGACGTGT 57.168 29.630 0.00 0.00 0.00 4.49
113 114 8.950403 ACTAAAAATAAGAATTGTCGCTTGAC 57.050 30.769 0.00 0.00 43.19 3.18
114 115 9.393249 CAACTAAAAATAAGAATTGTCGCTTGA 57.607 29.630 0.00 0.00 0.00 3.02
115 116 9.180678 ACAACTAAAAATAAGAATTGTCGCTTG 57.819 29.630 0.00 0.00 0.00 4.01
116 117 9.744468 AACAACTAAAAATAAGAATTGTCGCTT 57.256 25.926 0.00 0.00 0.00 4.68
117 118 9.744468 AAACAACTAAAAATAAGAATTGTCGCT 57.256 25.926 0.00 0.00 0.00 4.93
143 144 9.320295 ACCTTTGGTATTATCTGGAATTCAAAA 57.680 29.630 7.93 0.00 32.11 2.44
144 145 8.748412 CACCTTTGGTATTATCTGGAATTCAAA 58.252 33.333 7.93 0.00 32.11 2.69
145 146 7.893302 ACACCTTTGGTATTATCTGGAATTCAA 59.107 33.333 7.93 0.00 32.11 2.69
146 147 7.410174 ACACCTTTGGTATTATCTGGAATTCA 58.590 34.615 7.93 0.00 32.11 2.57
147 148 7.881775 ACACCTTTGGTATTATCTGGAATTC 57.118 36.000 0.00 0.00 32.11 2.17
148 149 7.497909 CGTACACCTTTGGTATTATCTGGAATT 59.502 37.037 0.00 0.00 32.11 2.17
149 150 6.990349 CGTACACCTTTGGTATTATCTGGAAT 59.010 38.462 0.00 0.00 32.11 3.01
150 151 6.154877 TCGTACACCTTTGGTATTATCTGGAA 59.845 38.462 0.00 0.00 32.11 3.53
151 152 5.657745 TCGTACACCTTTGGTATTATCTGGA 59.342 40.000 0.00 0.00 32.11 3.86
152 153 5.909477 TCGTACACCTTTGGTATTATCTGG 58.091 41.667 0.00 0.00 32.11 3.86
153 154 7.262772 TCTTCGTACACCTTTGGTATTATCTG 58.737 38.462 0.00 0.00 32.11 2.90
154 155 7.414222 TCTTCGTACACCTTTGGTATTATCT 57.586 36.000 0.00 0.00 32.11 1.98
155 156 8.483307 TTTCTTCGTACACCTTTGGTATTATC 57.517 34.615 0.00 0.00 32.11 1.75
156 157 8.851541 TTTTCTTCGTACACCTTTGGTATTAT 57.148 30.769 0.00 0.00 32.11 1.28
157 158 8.851541 ATTTTCTTCGTACACCTTTGGTATTA 57.148 30.769 0.00 0.00 32.11 0.98
158 159 7.754851 ATTTTCTTCGTACACCTTTGGTATT 57.245 32.000 0.00 0.00 32.11 1.89
159 160 8.851541 TTATTTTCTTCGTACACCTTTGGTAT 57.148 30.769 0.00 0.00 32.11 2.73
160 161 8.674263 TTTATTTTCTTCGTACACCTTTGGTA 57.326 30.769 0.00 0.00 32.11 3.25
161 162 7.571080 TTTATTTTCTTCGTACACCTTTGGT 57.429 32.000 0.00 0.00 35.62 3.67
162 163 8.347035 TCTTTTATTTTCTTCGTACACCTTTGG 58.653 33.333 0.00 0.00 0.00 3.28
163 164 9.724839 TTCTTTTATTTTCTTCGTACACCTTTG 57.275 29.630 0.00 0.00 0.00 2.77
164 165 9.726232 GTTCTTTTATTTTCTTCGTACACCTTT 57.274 29.630 0.00 0.00 0.00 3.11
165 166 8.895737 TGTTCTTTTATTTTCTTCGTACACCTT 58.104 29.630 0.00 0.00 0.00 3.50
166 167 8.441312 TGTTCTTTTATTTTCTTCGTACACCT 57.559 30.769 0.00 0.00 0.00 4.00
167 168 9.673454 AATGTTCTTTTATTTTCTTCGTACACC 57.327 29.630 0.00 0.00 0.00 4.16
172 173 9.463443 CTCCAAATGTTCTTTTATTTTCTTCGT 57.537 29.630 0.00 0.00 0.00 3.85
173 174 8.915654 CCTCCAAATGTTCTTTTATTTTCTTCG 58.084 33.333 0.00 0.00 0.00 3.79
174 175 9.764363 ACCTCCAAATGTTCTTTTATTTTCTTC 57.236 29.630 0.00 0.00 0.00 2.87
183 184 9.546428 CTTCAATTTACCTCCAAATGTTCTTTT 57.454 29.630 0.00 0.00 0.00 2.27
184 185 7.657354 GCTTCAATTTACCTCCAAATGTTCTTT 59.343 33.333 0.00 0.00 0.00 2.52
185 186 7.154656 GCTTCAATTTACCTCCAAATGTTCTT 58.845 34.615 0.00 0.00 0.00 2.52
186 187 6.295292 GGCTTCAATTTACCTCCAAATGTTCT 60.295 38.462 0.00 0.00 0.00 3.01
187 188 5.869344 GGCTTCAATTTACCTCCAAATGTTC 59.131 40.000 0.00 0.00 0.00 3.18
188 189 5.306678 TGGCTTCAATTTACCTCCAAATGTT 59.693 36.000 0.00 0.00 0.00 2.71
189 190 4.837860 TGGCTTCAATTTACCTCCAAATGT 59.162 37.500 0.00 0.00 0.00 2.71
190 191 5.404466 TGGCTTCAATTTACCTCCAAATG 57.596 39.130 0.00 0.00 0.00 2.32
191 192 4.081476 GCTGGCTTCAATTTACCTCCAAAT 60.081 41.667 0.00 0.00 0.00 2.32
192 193 3.258123 GCTGGCTTCAATTTACCTCCAAA 59.742 43.478 0.00 0.00 0.00 3.28
193 194 2.825532 GCTGGCTTCAATTTACCTCCAA 59.174 45.455 0.00 0.00 0.00 3.53
194 195 2.224992 TGCTGGCTTCAATTTACCTCCA 60.225 45.455 0.00 0.00 0.00 3.86
195 196 2.424956 CTGCTGGCTTCAATTTACCTCC 59.575 50.000 0.00 0.00 0.00 4.30
196 197 3.347216 TCTGCTGGCTTCAATTTACCTC 58.653 45.455 0.00 0.00 0.00 3.85
197 198 3.009473 TCTCTGCTGGCTTCAATTTACCT 59.991 43.478 0.00 0.00 0.00 3.08
198 199 3.347216 TCTCTGCTGGCTTCAATTTACC 58.653 45.455 0.00 0.00 0.00 2.85
199 200 4.379918 GGTTCTCTGCTGGCTTCAATTTAC 60.380 45.833 0.00 0.00 0.00 2.01
200 201 3.758554 GGTTCTCTGCTGGCTTCAATTTA 59.241 43.478 0.00 0.00 0.00 1.40
201 202 2.560105 GGTTCTCTGCTGGCTTCAATTT 59.440 45.455 0.00 0.00 0.00 1.82
202 203 2.165998 GGTTCTCTGCTGGCTTCAATT 58.834 47.619 0.00 0.00 0.00 2.32
203 204 1.615384 GGGTTCTCTGCTGGCTTCAAT 60.615 52.381 0.00 0.00 0.00 2.57
204 205 0.250901 GGGTTCTCTGCTGGCTTCAA 60.251 55.000 0.00 0.00 0.00 2.69
205 206 1.376466 GGGTTCTCTGCTGGCTTCA 59.624 57.895 0.00 0.00 0.00 3.02
206 207 1.743252 CGGGTTCTCTGCTGGCTTC 60.743 63.158 0.00 0.00 0.00 3.86
207 208 2.348998 CGGGTTCTCTGCTGGCTT 59.651 61.111 0.00 0.00 0.00 4.35
208 209 4.400961 GCGGGTTCTCTGCTGGCT 62.401 66.667 0.00 0.00 44.20 4.75
214 215 1.580845 CTTTGCCAGCGGGTTCTCTG 61.581 60.000 4.36 0.00 36.17 3.35
215 216 1.302832 CTTTGCCAGCGGGTTCTCT 60.303 57.895 4.36 0.00 36.17 3.10
216 217 2.982744 GCTTTGCCAGCGGGTTCTC 61.983 63.158 4.36 0.00 39.29 2.87
217 218 2.985847 GCTTTGCCAGCGGGTTCT 60.986 61.111 4.36 0.00 39.29 3.01
228 229 1.312815 CTACCATGGCCTAGCTTTGC 58.687 55.000 13.04 0.00 0.00 3.68
229 230 2.565841 GACTACCATGGCCTAGCTTTG 58.434 52.381 13.04 0.00 0.00 2.77
230 231 1.490910 GGACTACCATGGCCTAGCTTT 59.509 52.381 13.04 0.00 35.97 3.51
231 232 1.132500 GGACTACCATGGCCTAGCTT 58.868 55.000 13.04 0.00 35.97 3.74
232 233 0.764752 GGGACTACCATGGCCTAGCT 60.765 60.000 13.04 0.00 39.85 3.32
233 234 1.054406 TGGGACTACCATGGCCTAGC 61.054 60.000 13.04 3.79 46.80 3.42
234 235 3.240670 TGGGACTACCATGGCCTAG 57.759 57.895 13.04 9.81 46.80 3.02
243 244 0.175073 CTAGGCGTTGTGGGACTACC 59.825 60.000 0.00 0.00 40.81 3.18
244 245 0.175073 CCTAGGCGTTGTGGGACTAC 59.825 60.000 0.00 0.00 0.00 2.73
245 246 0.251922 ACCTAGGCGTTGTGGGACTA 60.252 55.000 9.30 0.00 0.00 2.59
246 247 1.535687 ACCTAGGCGTTGTGGGACT 60.536 57.895 9.30 0.00 0.00 3.85
247 248 1.375523 CACCTAGGCGTTGTGGGAC 60.376 63.158 9.30 0.00 0.00 4.46
248 249 3.065306 CACCTAGGCGTTGTGGGA 58.935 61.111 9.30 0.00 0.00 4.37
249 250 2.746277 GCACCTAGGCGTTGTGGG 60.746 66.667 9.30 0.00 0.00 4.61
250 251 0.960364 AATGCACCTAGGCGTTGTGG 60.960 55.000 9.30 2.19 41.25 4.17
251 252 2.555123 AATGCACCTAGGCGTTGTG 58.445 52.632 9.30 0.00 41.25 3.33
254 255 2.046285 GGCAATGCACCTAGGCGTT 61.046 57.895 9.30 0.12 43.47 4.84
255 256 1.622607 TAGGCAATGCACCTAGGCGT 61.623 55.000 9.30 0.00 38.81 5.68
256 257 1.146041 TAGGCAATGCACCTAGGCG 59.854 57.895 9.30 0.00 38.81 5.52
270 271 3.798511 GGTCCAGGGTGCCTAGGC 61.799 72.222 27.71 27.71 42.35 3.93
271 272 1.694169 ATGGTCCAGGGTGCCTAGG 60.694 63.158 3.67 3.67 29.64 3.02
272 273 1.528824 CATGGTCCAGGGTGCCTAG 59.471 63.158 0.00 0.00 29.64 3.02
273 274 2.000701 CCATGGTCCAGGGTGCCTA 61.001 63.158 14.78 0.00 29.93 3.93
274 275 3.341629 CCATGGTCCAGGGTGCCT 61.342 66.667 14.78 0.00 29.93 4.75
275 276 3.338250 TCCATGGTCCAGGGTGCC 61.338 66.667 21.76 0.00 36.61 5.01
276 277 2.044946 GTCCATGGTCCAGGGTGC 60.045 66.667 21.76 12.41 36.61 5.01
277 278 1.002134 GTGTCCATGGTCCAGGGTG 60.002 63.158 21.76 3.13 36.61 4.61
278 279 2.231380 GGTGTCCATGGTCCAGGGT 61.231 63.158 21.76 0.00 36.61 4.34
279 280 0.620410 TAGGTGTCCATGGTCCAGGG 60.620 60.000 16.90 16.90 36.56 4.45
280 281 0.541863 GTAGGTGTCCATGGTCCAGG 59.458 60.000 12.58 0.00 0.00 4.45
281 282 0.175760 CGTAGGTGTCCATGGTCCAG 59.824 60.000 12.58 5.62 0.00 3.86
282 283 0.543410 ACGTAGGTGTCCATGGTCCA 60.543 55.000 12.58 7.21 0.00 4.02
283 284 1.135721 GTACGTAGGTGTCCATGGTCC 59.864 57.143 12.58 12.78 0.00 4.46
284 285 1.820519 TGTACGTAGGTGTCCATGGTC 59.179 52.381 12.58 6.87 0.00 4.02
285 286 1.547372 GTGTACGTAGGTGTCCATGGT 59.453 52.381 12.58 0.00 0.00 3.55
286 287 1.822990 AGTGTACGTAGGTGTCCATGG 59.177 52.381 4.97 4.97 0.00 3.66
287 288 3.066342 CCTAGTGTACGTAGGTGTCCATG 59.934 52.174 11.42 0.00 33.51 3.66
288 289 3.285484 CCTAGTGTACGTAGGTGTCCAT 58.715 50.000 11.42 0.00 33.51 3.41
289 290 2.715046 CCTAGTGTACGTAGGTGTCCA 58.285 52.381 11.42 0.00 33.51 4.02
309 310 0.754587 AAGGAGGACGTCGGGGATAC 60.755 60.000 9.92 0.00 0.00 2.24
310 311 0.846015 TAAGGAGGACGTCGGGGATA 59.154 55.000 9.92 0.00 0.00 2.59
311 312 0.187851 ATAAGGAGGACGTCGGGGAT 59.812 55.000 9.92 0.00 0.00 3.85
312 313 0.846015 TATAAGGAGGACGTCGGGGA 59.154 55.000 9.92 0.00 0.00 4.81
313 314 1.202855 TCTATAAGGAGGACGTCGGGG 60.203 57.143 9.92 0.00 0.00 5.73
314 315 1.878734 GTCTATAAGGAGGACGTCGGG 59.121 57.143 9.92 0.00 0.00 5.14
315 316 1.878734 GGTCTATAAGGAGGACGTCGG 59.121 57.143 9.92 0.00 0.00 4.79
316 317 2.848691 AGGTCTATAAGGAGGACGTCG 58.151 52.381 9.92 0.00 0.00 5.12
317 318 5.595257 AAAAGGTCTATAAGGAGGACGTC 57.405 43.478 7.13 7.13 0.00 4.34
339 340 6.344312 CGAAACGTGAAATGATAACGCAAAAA 60.344 34.615 0.00 0.00 40.90 1.94
340 341 5.114273 CGAAACGTGAAATGATAACGCAAAA 59.886 36.000 0.00 0.00 40.90 2.44
341 342 4.609295 CGAAACGTGAAATGATAACGCAAA 59.391 37.500 0.00 0.00 40.90 3.68
342 343 4.084485 TCGAAACGTGAAATGATAACGCAA 60.084 37.500 0.00 0.00 40.90 4.85
343 344 3.429207 TCGAAACGTGAAATGATAACGCA 59.571 39.130 0.00 0.00 40.90 5.24
344 345 3.981210 TCGAAACGTGAAATGATAACGC 58.019 40.909 0.00 0.00 40.90 4.84
345 346 4.565229 CCTCGAAACGTGAAATGATAACG 58.435 43.478 0.00 0.00 42.82 3.18
346 347 4.331962 GCCTCGAAACGTGAAATGATAAC 58.668 43.478 0.00 0.00 0.00 1.89
347 348 3.061563 CGCCTCGAAACGTGAAATGATAA 59.938 43.478 0.00 0.00 0.00 1.75
348 349 2.601314 CGCCTCGAAACGTGAAATGATA 59.399 45.455 0.00 0.00 0.00 2.15
349 350 1.393539 CGCCTCGAAACGTGAAATGAT 59.606 47.619 0.00 0.00 0.00 2.45
350 351 0.787787 CGCCTCGAAACGTGAAATGA 59.212 50.000 0.00 0.00 0.00 2.57
351 352 0.787787 TCGCCTCGAAACGTGAAATG 59.212 50.000 6.63 0.00 31.06 2.32
352 353 1.659098 GATCGCCTCGAAACGTGAAAT 59.341 47.619 6.63 0.00 39.99 2.17
353 354 1.065358 GATCGCCTCGAAACGTGAAA 58.935 50.000 6.63 0.00 39.99 2.69
354 355 0.242825 AGATCGCCTCGAAACGTGAA 59.757 50.000 6.63 0.00 39.99 3.18
355 356 0.242825 AAGATCGCCTCGAAACGTGA 59.757 50.000 6.63 0.28 39.99 4.35
356 357 1.068474 AAAGATCGCCTCGAAACGTG 58.932 50.000 6.63 0.00 39.99 4.49
357 358 1.068474 CAAAGATCGCCTCGAAACGT 58.932 50.000 6.63 0.00 39.99 3.99
358 359 1.068474 ACAAAGATCGCCTCGAAACG 58.932 50.000 0.50 0.50 39.99 3.60
359 360 3.537793 AAACAAAGATCGCCTCGAAAC 57.462 42.857 0.00 0.00 39.99 2.78
360 361 4.059511 TGTAAACAAAGATCGCCTCGAAA 58.940 39.130 0.00 0.00 39.99 3.46
361 362 3.655486 TGTAAACAAAGATCGCCTCGAA 58.345 40.909 0.00 0.00 39.99 3.71
362 363 3.306917 TGTAAACAAAGATCGCCTCGA 57.693 42.857 0.00 0.00 41.13 4.04
385 386 0.602562 TTTGGTAGTACCGGGTCACG 59.397 55.000 14.67 0.00 42.58 4.35
386 387 1.066645 CCTTTGGTAGTACCGGGTCAC 60.067 57.143 14.67 0.00 42.58 3.67
387 388 1.203162 TCCTTTGGTAGTACCGGGTCA 60.203 52.381 14.67 0.00 42.58 4.02
388 389 1.205655 GTCCTTTGGTAGTACCGGGTC 59.794 57.143 14.67 10.15 42.58 4.46
389 390 1.269958 GTCCTTTGGTAGTACCGGGT 58.730 55.000 14.67 4.46 42.58 5.28
390 391 0.174162 CGTCCTTTGGTAGTACCGGG 59.826 60.000 14.67 15.18 42.58 5.73
391 392 1.133790 CTCGTCCTTTGGTAGTACCGG 59.866 57.143 14.67 9.81 42.58 5.28
392 393 1.468736 GCTCGTCCTTTGGTAGTACCG 60.469 57.143 14.67 0.30 42.58 4.02
393 394 1.823610 AGCTCGTCCTTTGGTAGTACC 59.176 52.381 12.80 12.80 39.22 3.34
394 395 3.509740 GAAGCTCGTCCTTTGGTAGTAC 58.490 50.000 0.00 0.00 0.00 2.73
395 396 2.163010 CGAAGCTCGTCCTTTGGTAGTA 59.837 50.000 0.00 0.00 34.72 1.82
396 397 1.067776 CGAAGCTCGTCCTTTGGTAGT 60.068 52.381 0.00 0.00 34.72 2.73
397 398 1.630148 CGAAGCTCGTCCTTTGGTAG 58.370 55.000 0.00 0.00 34.72 3.18
398 399 0.245539 CCGAAGCTCGTCCTTTGGTA 59.754 55.000 12.90 0.00 40.21 3.25
399 400 1.004918 CCGAAGCTCGTCCTTTGGT 60.005 57.895 12.90 0.00 40.21 3.67
400 401 0.737715 CTCCGAAGCTCGTCCTTTGG 60.738 60.000 14.23 14.23 44.48 3.28
401 402 0.737715 CCTCCGAAGCTCGTCCTTTG 60.738 60.000 0.00 0.00 38.40 2.77
402 403 1.592223 CCTCCGAAGCTCGTCCTTT 59.408 57.895 0.00 0.00 38.40 3.11
403 404 3.007973 GCCTCCGAAGCTCGTCCTT 62.008 63.158 0.00 0.00 38.40 3.36
404 405 3.453679 GCCTCCGAAGCTCGTCCT 61.454 66.667 0.00 0.00 38.40 3.85
405 406 2.579684 ATTGCCTCCGAAGCTCGTCC 62.580 60.000 0.00 0.00 38.40 4.79
406 407 1.153549 ATTGCCTCCGAAGCTCGTC 60.154 57.895 0.00 0.00 38.40 4.20
407 408 1.448540 CATTGCCTCCGAAGCTCGT 60.449 57.895 0.00 0.00 38.40 4.18
408 409 2.817423 GCATTGCCTCCGAAGCTCG 61.817 63.158 0.00 0.00 40.07 5.03
409 410 2.817423 CGCATTGCCTCCGAAGCTC 61.817 63.158 2.41 0.00 0.00 4.09
410 411 2.821366 CGCATTGCCTCCGAAGCT 60.821 61.111 2.41 0.00 0.00 3.74
411 412 3.880846 CCGCATTGCCTCCGAAGC 61.881 66.667 2.41 0.00 0.00 3.86
412 413 2.436646 ACCGCATTGCCTCCGAAG 60.437 61.111 2.41 0.00 0.00 3.79
413 414 2.435938 GACCGCATTGCCTCCGAA 60.436 61.111 2.41 0.00 0.00 4.30
414 415 4.812476 CGACCGCATTGCCTCCGA 62.812 66.667 2.41 0.00 0.00 4.55
421 422 4.459331 CCCAACGCGACCGCATTG 62.459 66.667 15.93 15.01 42.93 2.82
426 427 4.953868 TGTCACCCAACGCGACCG 62.954 66.667 15.93 0.00 41.14 4.79
427 428 3.343421 GTGTCACCCAACGCGACC 61.343 66.667 15.93 0.00 0.00 4.79
428 429 2.174969 TTGTGTCACCCAACGCGAC 61.175 57.895 15.93 0.00 32.25 5.19
429 430 2.174969 GTTGTGTCACCCAACGCGA 61.175 57.895 15.93 0.00 33.57 5.87
430 431 2.326550 GTTGTGTCACCCAACGCG 59.673 61.111 3.53 3.53 33.57 6.01
431 432 1.092921 TCTGTTGTGTCACCCAACGC 61.093 55.000 0.00 0.00 44.00 4.84
432 433 0.655733 GTCTGTTGTGTCACCCAACG 59.344 55.000 0.00 0.00 44.00 4.10
433 434 1.021968 GGTCTGTTGTGTCACCCAAC 58.978 55.000 0.00 0.00 41.97 3.77
434 435 0.621082 TGGTCTGTTGTGTCACCCAA 59.379 50.000 0.00 0.00 0.00 4.12
435 436 0.180171 CTGGTCTGTTGTGTCACCCA 59.820 55.000 0.00 0.00 0.00 4.51
436 437 0.535102 CCTGGTCTGTTGTGTCACCC 60.535 60.000 0.00 0.00 0.00 4.61
437 438 0.468226 TCCTGGTCTGTTGTGTCACC 59.532 55.000 0.00 0.00 0.00 4.02
438 439 1.583054 GTCCTGGTCTGTTGTGTCAC 58.417 55.000 0.00 0.00 0.00 3.67
439 440 0.104120 CGTCCTGGTCTGTTGTGTCA 59.896 55.000 0.00 0.00 0.00 3.58
440 441 0.600255 CCGTCCTGGTCTGTTGTGTC 60.600 60.000 0.00 0.00 0.00 3.67
441 442 1.445942 CCGTCCTGGTCTGTTGTGT 59.554 57.895 0.00 0.00 0.00 3.72
442 443 4.361253 CCGTCCTGGTCTGTTGTG 57.639 61.111 0.00 0.00 0.00 3.33
459 460 2.507769 CCGCGACGGGTTAAGGAC 60.508 66.667 8.23 0.00 44.15 3.85
475 476 1.482593 AGATGTCAGTTCGGGATGACC 59.517 52.381 10.79 0.00 44.19 4.02
476 477 2.969628 AGATGTCAGTTCGGGATGAC 57.030 50.000 7.56 7.56 44.88 3.06
477 478 3.361786 TGTAGATGTCAGTTCGGGATGA 58.638 45.455 0.00 0.00 0.00 2.92
478 479 3.491619 CCTGTAGATGTCAGTTCGGGATG 60.492 52.174 0.00 0.00 0.00 3.51
479 480 2.695666 CCTGTAGATGTCAGTTCGGGAT 59.304 50.000 0.00 0.00 0.00 3.85
480 481 2.100197 CCTGTAGATGTCAGTTCGGGA 58.900 52.381 0.00 0.00 0.00 5.14
481 482 1.137086 CCCTGTAGATGTCAGTTCGGG 59.863 57.143 0.00 0.00 0.00 5.14
482 483 1.825474 ACCCTGTAGATGTCAGTTCGG 59.175 52.381 0.00 0.00 0.00 4.30
483 484 2.881074 CACCCTGTAGATGTCAGTTCG 58.119 52.381 0.00 0.00 0.00 3.95
484 485 2.622436 GCACCCTGTAGATGTCAGTTC 58.378 52.381 0.00 0.00 0.00 3.01
485 486 1.066858 CGCACCCTGTAGATGTCAGTT 60.067 52.381 0.00 0.00 0.00 3.16
486 487 0.532573 CGCACCCTGTAGATGTCAGT 59.467 55.000 0.00 0.00 0.00 3.41
487 488 0.532573 ACGCACCCTGTAGATGTCAG 59.467 55.000 0.00 0.00 0.00 3.51
488 489 0.530744 GACGCACCCTGTAGATGTCA 59.469 55.000 0.00 0.00 0.00 3.58
489 490 0.525668 CGACGCACCCTGTAGATGTC 60.526 60.000 0.00 0.00 0.00 3.06
490 491 1.511305 CGACGCACCCTGTAGATGT 59.489 57.895 0.00 0.00 0.00 3.06
491 492 1.878522 GCGACGCACCCTGTAGATG 60.879 63.158 16.42 0.00 0.00 2.90
492 493 2.494918 GCGACGCACCCTGTAGAT 59.505 61.111 16.42 0.00 0.00 1.98
493 494 3.755628 GGCGACGCACCCTGTAGA 61.756 66.667 23.09 0.00 0.00 2.59
494 495 3.701604 GAGGCGACGCACCCTGTAG 62.702 68.421 23.09 0.00 0.00 2.74
495 496 3.755628 GAGGCGACGCACCCTGTA 61.756 66.667 23.09 0.00 0.00 2.74
499 500 4.778143 AATGGAGGCGACGCACCC 62.778 66.667 23.09 20.72 0.00 4.61
500 501 3.195698 GAATGGAGGCGACGCACC 61.196 66.667 23.09 22.69 0.00 5.01
501 502 3.195698 GGAATGGAGGCGACGCAC 61.196 66.667 23.09 14.47 0.00 5.34
553 554 1.717937 GTGCTGACGGATCATGCAC 59.282 57.895 12.67 12.67 44.79 4.57
557 558 1.524002 CAGGGTGCTGACGGATCAT 59.476 57.895 0.00 0.00 33.22 2.45
573 574 1.764054 CCCTCTCCCAGCTACCCAG 60.764 68.421 0.00 0.00 0.00 4.45
577 578 0.033011 TCTCACCCTCTCCCAGCTAC 60.033 60.000 0.00 0.00 0.00 3.58
586 587 3.201708 CCCATTTCAATCTCTCACCCTCT 59.798 47.826 0.00 0.00 0.00 3.69
592 593 4.957954 CCCATTTCCCATTTCAATCTCTCA 59.042 41.667 0.00 0.00 0.00 3.27
607 608 0.608035 TCGCCACTTCACCCATTTCC 60.608 55.000 0.00 0.00 0.00 3.13
611 612 0.327924 TTCATCGCCACTTCACCCAT 59.672 50.000 0.00 0.00 0.00 4.00
629 630 4.422984 TGTAAGGCTTAGTCCACTACCTT 58.577 43.478 7.33 11.47 38.08 3.50
639 640 4.332428 ACTCAACGTTGTAAGGCTTAGT 57.668 40.909 26.47 16.92 0.00 2.24
654 655 1.001706 GGCCTTCCGAACAAACTCAAC 60.002 52.381 0.00 0.00 0.00 3.18
668 669 1.586154 CCACATCAACCACGGCCTTC 61.586 60.000 0.00 0.00 0.00 3.46
669 670 1.603455 CCACATCAACCACGGCCTT 60.603 57.895 0.00 0.00 0.00 4.35
670 671 2.034066 CCACATCAACCACGGCCT 59.966 61.111 0.00 0.00 0.00 5.19
678 679 0.889994 TTGGAGCATGCCACATCAAC 59.110 50.000 15.66 0.00 37.75 3.18
679 680 1.478916 CATTGGAGCATGCCACATCAA 59.521 47.619 15.66 12.00 37.75 2.57
680 681 1.107945 CATTGGAGCATGCCACATCA 58.892 50.000 15.66 2.97 37.75 3.07
681 682 0.249322 GCATTGGAGCATGCCACATC 60.249 55.000 15.66 4.95 37.75 3.06
682 683 0.686441 AGCATTGGAGCATGCCACAT 60.686 50.000 15.66 0.00 44.34 3.21
683 684 0.901114 AAGCATTGGAGCATGCCACA 60.901 50.000 15.66 11.19 44.34 4.17
691 692 5.009410 AGCACATATCTTAAAGCATTGGAGC 59.991 40.000 0.00 0.00 0.00 4.70
703 704 7.712797 TCGTCAGATAACAAGCACATATCTTA 58.287 34.615 0.00 0.00 34.89 2.10
738 739 7.815641 TGATTTTTGACAATCTCGAGCAAATA 58.184 30.769 7.81 7.67 34.66 1.40
739 740 6.680810 TGATTTTTGACAATCTCGAGCAAAT 58.319 32.000 7.81 0.00 34.66 2.32
773 774 9.967346 CGTCATATTCTCTCTAAAGTTTATGGA 57.033 33.333 0.00 0.00 0.00 3.41
775 776 9.751542 ACCGTCATATTCTCTCTAAAGTTTATG 57.248 33.333 0.00 0.00 0.00 1.90
794 795 1.407258 CCACACAACCAAAACCGTCAT 59.593 47.619 0.00 0.00 0.00 3.06
952 956 0.842635 CAGAATTGGGAGGAGGAGGG 59.157 60.000 0.00 0.00 0.00 4.30
1439 1443 1.139163 GCGCACCAATTCAAACCAAG 58.861 50.000 0.30 0.00 0.00 3.61
1611 1615 8.758715 GCAAAATATGAACTCATCCATAAAAGC 58.241 33.333 0.00 0.00 37.76 3.51
1621 1625 5.954150 AGTCCCAAGCAAAATATGAACTCAT 59.046 36.000 0.00 0.00 40.22 2.90
1745 1749 0.604578 GGTCAGCAAGTGTACCCGTA 59.395 55.000 0.00 0.00 0.00 4.02
1784 1788 5.344933 TGCAATTACACATAGACGATATCGC 59.655 40.000 24.59 16.68 44.43 4.58
1996 2008 7.328493 GCAGAACCGCTGTAAAATCTTTTAATT 59.672 33.333 0.00 0.00 46.62 1.40
2014 2026 1.001487 TGCAATGACAAAGCAGAACCG 60.001 47.619 1.46 0.00 33.75 4.44
2178 2190 2.348660 CGCAATCCACGGTTACCTTTA 58.651 47.619 0.00 0.00 0.00 1.85
2757 2770 4.079980 TCATCATGTAACCCATAACCGG 57.920 45.455 0.00 0.00 30.71 5.28
2772 2785 1.000955 GCCTCCGAACCGTATCATCAT 59.999 52.381 0.00 0.00 0.00 2.45
2773 2786 0.387929 GCCTCCGAACCGTATCATCA 59.612 55.000 0.00 0.00 0.00 3.07
2774 2787 0.387929 TGCCTCCGAACCGTATCATC 59.612 55.000 0.00 0.00 0.00 2.92
3236 3250 3.423123 CCGATTTGTTACAGACGCTTCAC 60.423 47.826 0.00 0.00 0.00 3.18
3237 3251 2.734606 CCGATTTGTTACAGACGCTTCA 59.265 45.455 0.00 0.00 0.00 3.02
3418 3432 3.119101 AGGAATACAAGTACGACAGGCTG 60.119 47.826 14.16 14.16 0.00 4.85
3441 3455 6.931281 TCTTGACAGAATCCAAAGAGTAACAG 59.069 38.462 0.00 0.00 0.00 3.16
3974 7849 7.976734 CCAGAAGATAGGTAGAACAGTTGTTAG 59.023 40.741 0.00 0.00 38.56 2.34
3992 7867 7.234355 ACTTATGAAGGAAACAACCAGAAGAT 58.766 34.615 0.00 0.00 32.62 2.40
4028 7903 5.295045 ACAACCAAAAGGTAGAACAGTTACG 59.705 40.000 0.00 0.00 0.00 3.18
4219 8094 9.353999 GTATGAAACCAATTTCCTTGTCATAAC 57.646 33.333 0.00 0.00 43.18 1.89
4233 8108 9.553064 GTGATCTAGAAGATGTATGAAACCAAT 57.447 33.333 0.00 0.00 34.53 3.16
4274 8149 6.539826 TCACCATCACAGAACATCAATATGTC 59.460 38.462 0.00 0.00 45.79 3.06
4386 8261 2.932614 CTGTTCTCCTAATTCTGCACCG 59.067 50.000 0.00 0.00 0.00 4.94
4417 8292 3.431207 GCATGCACCATAAAGGCTGAATT 60.431 43.478 14.21 0.00 43.14 2.17
4505 8385 5.808042 AACAGATACATGCTTGCTAAGTG 57.192 39.130 0.00 0.00 0.00 3.16
4506 8386 6.824305 AAAACAGATACATGCTTGCTAAGT 57.176 33.333 0.00 0.00 0.00 2.24
4507 8387 9.282247 CTTTAAAACAGATACATGCTTGCTAAG 57.718 33.333 0.00 0.00 0.00 2.18
4508 8388 8.792633 ACTTTAAAACAGATACATGCTTGCTAA 58.207 29.630 0.00 0.00 0.00 3.09
4509 8389 8.335532 ACTTTAAAACAGATACATGCTTGCTA 57.664 30.769 0.00 0.00 0.00 3.49
4971 8860 2.867109 TCCAAAAGGGAAGCAGAGAG 57.133 50.000 0.00 0.00 44.80 3.20
4984 8873 1.818959 GCATGCCCACAGCTCCAAAA 61.819 55.000 6.36 0.00 44.23 2.44
5048 8937 1.202758 AGAACCAAACAGATGCCACGA 60.203 47.619 0.00 0.00 0.00 4.35
5190 9081 9.869757 GCCAAATCTAATTTAGTAAAATGTGGT 57.130 29.630 12.72 0.00 35.46 4.16
5239 9130 5.387113 AGGGTTATAACTTGCATGGATGA 57.613 39.130 15.05 0.00 0.00 2.92
5242 9133 5.826643 AGAAAGGGTTATAACTTGCATGGA 58.173 37.500 15.05 0.00 0.00 3.41
5248 9139 8.979534 ACTAGGACTAGAAAGGGTTATAACTTG 58.020 37.037 15.05 0.00 36.97 3.16
5366 9258 6.681729 ACACTTAACCCTACTCAGAATTCA 57.318 37.500 8.44 0.00 0.00 2.57
5431 9323 5.588648 GCAAGAATTTACTATAGCACCCACA 59.411 40.000 0.00 0.00 0.00 4.17
5624 9516 6.489361 TGGTCGTGTAATAAAAGCCCTAAAAA 59.511 34.615 0.00 0.00 0.00 1.94
5651 9543 0.532862 AACGTGGAGCTGTTGTCCAG 60.533 55.000 0.00 0.00 45.00 3.86
5666 9558 5.661056 TCAGGATTATGAGAACAGAACGT 57.339 39.130 0.00 0.00 29.97 3.99
5667 9559 6.983307 AGAATCAGGATTATGAGAACAGAACG 59.017 38.462 0.00 0.00 31.44 3.95
5690 9582 4.323569 TTTGGCCACACCCAAATATAGA 57.676 40.909 3.88 0.00 46.84 1.98
5702 9594 0.105760 ACAGGTCCATTTTGGCCACA 60.106 50.000 3.88 0.00 37.47 4.17
5828 9720 1.155889 TGACACGATGGTTCACATGC 58.844 50.000 0.00 0.00 40.72 4.06
5832 9724 0.872388 GGGTTGACACGATGGTTCAC 59.128 55.000 0.00 0.00 0.00 3.18
5878 9770 3.120321 TGTGGGACATATAATCGGTGC 57.880 47.619 0.00 0.00 44.52 5.01
5892 9784 2.094100 TGGGAAAGCATTTTGTGGGA 57.906 45.000 0.00 0.00 39.27 4.37
6202 10177 2.890945 AGCAACAGACACCCCATTTAAC 59.109 45.455 0.00 0.00 0.00 2.01
6275 10250 6.145535 CAGCAGAAAAGGTATGTCAAGAAAC 58.854 40.000 0.00 0.00 0.00 2.78
6369 10344 7.563888 ACTGAAAAGTTACACTTCCCTTTAC 57.436 36.000 0.00 0.00 37.47 2.01
6379 10354 9.760660 GATGATCATACAACTGAAAAGTTACAC 57.239 33.333 8.54 0.00 0.00 2.90
6536 10595 6.650120 TCCTATTCCTGCGTTTTTAGAATCT 58.350 36.000 0.00 0.00 0.00 2.40
6592 10651 8.579682 AAACAAGACAAAAATGCTGTAAGATC 57.420 30.769 0.00 0.00 34.07 2.75
6727 10786 8.589701 TGTCACTTGTCTGATTAGTAGGATTA 57.410 34.615 0.00 0.00 0.00 1.75
6860 10919 0.530744 GGCTCACCATGTCGAGTACA 59.469 55.000 9.61 0.00 43.86 2.90
6884 10943 8.534333 AATGATTCTGCATAATTCATTGATGC 57.466 30.769 15.22 3.62 45.02 3.91
6887 10946 9.744468 CTCAAATGATTCTGCATAATTCATTGA 57.256 29.630 16.01 14.96 0.00 2.57
6928 11022 4.278419 GGGTTTTCTTGTGCAGTTATGAGT 59.722 41.667 0.00 0.00 0.00 3.41
6929 11023 4.520492 AGGGTTTTCTTGTGCAGTTATGAG 59.480 41.667 0.00 0.00 0.00 2.90
6936 11030 2.405892 CGAAGGGTTTTCTTGTGCAG 57.594 50.000 0.00 0.00 0.00 4.41
7166 11260 2.159085 GGAATAGGAGGTGAGGTTCGTG 60.159 54.545 0.00 0.00 0.00 4.35
7574 11752 6.369065 GGAGTCTTTTCGTATCTTTGTGACAT 59.631 38.462 0.00 0.00 0.00 3.06
7752 11977 3.251479 TCATGACCCTTCACTCAATCG 57.749 47.619 0.00 0.00 33.38 3.34
7756 11981 3.648067 AGTTCTTCATGACCCTTCACTCA 59.352 43.478 0.00 0.00 33.38 3.41
7764 11989 7.450014 TCATCTCTCTATAGTTCTTCATGACCC 59.550 40.741 0.00 0.00 0.00 4.46
7805 12030 2.341846 AACCACCGTGTGACAAGATT 57.658 45.000 0.00 0.00 35.23 2.40
7825 12050 5.483937 TCATCAAAGAGCCTCAACCTACTAA 59.516 40.000 0.00 0.00 0.00 2.24
7827 12052 3.840666 TCATCAAAGAGCCTCAACCTACT 59.159 43.478 0.00 0.00 0.00 2.57
7835 12062 6.700352 AGAGCTATTATCATCAAAGAGCCTC 58.300 40.000 0.00 0.00 41.07 4.70
7952 12366 4.943705 ACAGGGTATATGTTTCTGCAGTTG 59.056 41.667 14.67 0.00 0.00 3.16
7963 12377 7.298374 TGTAGAGATCAGAACAGGGTATATGT 58.702 38.462 0.00 0.00 0.00 2.29
7967 12381 8.811017 CAATATGTAGAGATCAGAACAGGGTAT 58.189 37.037 0.00 0.00 0.00 2.73
7973 12394 6.127083 TGGTGCAATATGTAGAGATCAGAACA 60.127 38.462 0.00 0.00 0.00 3.18
8009 12430 1.020437 GCAGGGTAATCAGCTTCAGC 58.980 55.000 0.00 0.00 42.49 4.26
8010 12431 2.012673 GTGCAGGGTAATCAGCTTCAG 58.987 52.381 0.00 0.00 0.00 3.02
8011 12432 1.350684 TGTGCAGGGTAATCAGCTTCA 59.649 47.619 0.00 0.00 0.00 3.02
8012 12433 2.113860 TGTGCAGGGTAATCAGCTTC 57.886 50.000 0.00 0.00 0.00 3.86
8013 12434 2.162681 GTTGTGCAGGGTAATCAGCTT 58.837 47.619 0.00 0.00 0.00 3.74
8014 12435 1.073763 TGTTGTGCAGGGTAATCAGCT 59.926 47.619 0.00 0.00 0.00 4.24
8015 12436 1.200020 GTGTTGTGCAGGGTAATCAGC 59.800 52.381 0.00 0.00 0.00 4.26
8016 12437 1.812571 GGTGTTGTGCAGGGTAATCAG 59.187 52.381 0.00 0.00 0.00 2.90
8099 12520 1.848652 AGCCTCGGCAACTAGAACTA 58.151 50.000 11.02 0.00 44.88 2.24
8151 12572 6.529125 CCACTAATCAATTTGTCTTGTCATGC 59.471 38.462 0.00 0.00 0.00 4.06
8194 12615 6.712998 CCCCGATGTTATACATATTGAACCAA 59.287 38.462 0.00 0.00 39.27 3.67
8196 12617 5.646360 CCCCCGATGTTATACATATTGAACC 59.354 44.000 0.00 0.00 39.27 3.62
8198 12619 5.013704 AGCCCCCGATGTTATACATATTGAA 59.986 40.000 0.00 0.00 39.27 2.69
8199 12620 4.534500 AGCCCCCGATGTTATACATATTGA 59.466 41.667 0.00 0.00 39.27 2.57
8200 12621 4.635765 CAGCCCCCGATGTTATACATATTG 59.364 45.833 0.00 0.00 39.27 1.90
8201 12622 4.288626 ACAGCCCCCGATGTTATACATATT 59.711 41.667 0.00 0.00 39.27 1.28
8203 12624 3.244582 ACAGCCCCCGATGTTATACATA 58.755 45.455 0.00 0.00 39.27 2.29
8204 12625 2.054799 ACAGCCCCCGATGTTATACAT 58.945 47.619 0.00 0.00 42.43 2.29
8205 12626 1.502690 ACAGCCCCCGATGTTATACA 58.497 50.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.