Multiple sequence alignment - TraesCS1D01G138600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G138600 chr1D 100.000 5904 0 0 1 5904 190474107 190480010 0.000000e+00 10903.0
1 TraesCS1D01G138600 chr1D 94.792 192 10 0 326 517 281515011 281515202 3.460000e-77 300.0
2 TraesCS1D01G138600 chr1D 93.750 192 12 0 326 517 194200549 194200740 7.490000e-74 289.0
3 TraesCS1D01G138600 chr1D 96.721 61 2 0 2775 2835 190476837 190476897 1.050000e-17 102.0
4 TraesCS1D01G138600 chr1D 96.721 61 2 0 2731 2791 190476881 190476941 1.050000e-17 102.0
5 TraesCS1D01G138600 chr1A 93.212 4788 213 37 541 5264 212026459 212021720 0.000000e+00 6938.0
6 TraesCS1D01G138600 chr1A 97.872 658 14 0 5247 5904 212019877 212019220 0.000000e+00 1138.0
7 TraesCS1D01G138600 chr1A 96.552 58 2 0 2734 2791 212024206 212024149 4.870000e-16 97.1
8 TraesCS1D01G138600 chr1B 92.232 2652 122 18 1641 4257 263943190 263945792 0.000000e+00 3679.0
9 TraesCS1D01G138600 chr1B 94.269 1675 57 8 4242 5904 263946124 263947771 0.000000e+00 2525.0
10 TraesCS1D01G138600 chr1B 95.181 581 23 3 1069 1645 263942490 263943069 0.000000e+00 913.0
11 TraesCS1D01G138600 chr1B 85.960 349 6 6 533 869 263941942 263942259 3.410000e-87 333.0
12 TraesCS1D01G138600 chr1B 97.396 192 4 1 897 1088 263942258 263942448 5.710000e-85 326.0
13 TraesCS1D01G138600 chr1B 93.750 192 12 0 326 517 555256783 555256592 7.490000e-74 289.0
14 TraesCS1D01G138600 chr1B 95.082 61 3 0 2775 2835 263944255 263944315 4.870000e-16 97.1
15 TraesCS1D01G138600 chr6B 95.161 248 12 0 4 251 379818037 379817790 5.550000e-105 392.0
16 TraesCS1D01G138600 chr5B 94.271 192 11 0 326 517 639368088 639367897 1.610000e-75 294.0
17 TraesCS1D01G138600 chr5A 94.271 192 11 0 326 517 481684192 481684001 1.610000e-75 294.0
18 TraesCS1D01G138600 chr4B 94.271 192 11 0 326 517 115413868 115414059 1.610000e-75 294.0
19 TraesCS1D01G138600 chr3A 94.271 192 11 0 326 517 384670194 384670385 1.610000e-75 294.0
20 TraesCS1D01G138600 chr7D 93.750 192 12 0 326 517 294050157 294049966 7.490000e-74 289.0
21 TraesCS1D01G138600 chr2B 93.750 192 12 0 326 517 135770410 135770219 7.490000e-74 289.0
22 TraesCS1D01G138600 chr2B 74.667 225 42 14 5650 5865 695859498 695859716 1.050000e-12 86.1
23 TraesCS1D01G138600 chr2A 73.384 263 51 15 5614 5865 716487855 716488109 4.900000e-11 80.5
24 TraesCS1D01G138600 chr2D 73.894 226 42 13 5650 5865 578936844 578937062 2.280000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G138600 chr1D 190474107 190480010 5903 False 3702.333333 10903 97.814000 1 5904 3 chr1D.!!$F3 5903
1 TraesCS1D01G138600 chr1A 212019220 212026459 7239 True 2724.366667 6938 95.878667 541 5904 3 chr1A.!!$R1 5363
2 TraesCS1D01G138600 chr1B 263941942 263947771 5829 False 1312.183333 3679 93.353333 533 5904 6 chr1B.!!$F1 5371

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 266 0.035739 GCCCTCGTAAACTGGACCAA 59.964 55.000 0.0 0.0 0.00 3.67 F
325 326 0.341961 AGGCTGGTCATAGTGGGGTA 59.658 55.000 0.0 0.0 0.00 3.69 F
326 327 1.061346 AGGCTGGTCATAGTGGGGTAT 60.061 52.381 0.0 0.0 0.00 2.73 F
327 328 1.072331 GGCTGGTCATAGTGGGGTATG 59.928 57.143 0.0 0.0 0.00 2.39 F
1838 2065 1.142778 GCTAGTCGGCTTTCAGCGAG 61.143 60.000 0.0 0.0 43.62 5.03 F
2381 2636 0.476771 GGTGGAGAAGTGGGGAACAA 59.523 55.000 0.0 0.0 0.00 2.83 F
2714 2984 0.687354 CTGGGTGTGGCTGTACTTCT 59.313 55.000 0.0 0.0 0.00 2.85 F
3712 3992 0.820871 AAGGACGATGAGCTGGAGAC 59.179 55.000 0.0 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1930 2161 0.251073 TAAAGGGGAGGTTAGCACGC 59.749 55.000 0.00 0.0 0.00 5.34 R
1931 2162 4.618920 ATATAAAGGGGAGGTTAGCACG 57.381 45.455 0.00 0.0 0.00 5.34 R
2317 2572 6.773638 ACTATTTTGAGACAGAACTGGACAT 58.226 36.000 6.76 0.0 34.19 3.06 R
2351 2606 2.230660 CTTCTCCACCCAAACCTTGAC 58.769 52.381 0.00 0.0 0.00 3.18 R
2917 3187 0.167470 CACAAGCAGCCGACATGAAG 59.833 55.000 0.00 0.0 0.00 3.02 R
3712 3992 0.677731 AACCTCGGCATGTGGTGATG 60.678 55.000 3.10 0.0 43.56 3.07 R
4642 5287 1.450312 GACCCTCACATCCTTGCCG 60.450 63.158 0.00 0.0 0.00 5.69 R
5315 7820 1.615883 AGATCATCAATCGCTACGGCT 59.384 47.619 0.00 0.0 39.55 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.856126 TCTGTAGATTTGCTAAAACCACG 57.144 39.130 0.00 0.00 0.00 4.94
26 27 5.543714 TCTGTAGATTTGCTAAAACCACGA 58.456 37.500 0.00 0.00 0.00 4.35
27 28 6.170506 TCTGTAGATTTGCTAAAACCACGAT 58.829 36.000 0.00 0.00 0.00 3.73
28 29 6.312918 TCTGTAGATTTGCTAAAACCACGATC 59.687 38.462 0.00 0.00 0.00 3.69
29 30 4.965119 AGATTTGCTAAAACCACGATCC 57.035 40.909 0.00 0.00 0.00 3.36
30 31 4.331968 AGATTTGCTAAAACCACGATCCA 58.668 39.130 0.00 0.00 0.00 3.41
31 32 3.907894 TTTGCTAAAACCACGATCCAC 57.092 42.857 0.00 0.00 0.00 4.02
32 33 2.851263 TGCTAAAACCACGATCCACT 57.149 45.000 0.00 0.00 0.00 4.00
33 34 3.965379 TGCTAAAACCACGATCCACTA 57.035 42.857 0.00 0.00 0.00 2.74
34 35 3.857052 TGCTAAAACCACGATCCACTAG 58.143 45.455 0.00 0.00 0.00 2.57
35 36 3.512329 TGCTAAAACCACGATCCACTAGA 59.488 43.478 0.00 0.00 0.00 2.43
36 37 3.864003 GCTAAAACCACGATCCACTAGAC 59.136 47.826 0.00 0.00 0.00 2.59
37 38 4.619863 GCTAAAACCACGATCCACTAGACA 60.620 45.833 0.00 0.00 0.00 3.41
38 39 3.314541 AAACCACGATCCACTAGACAC 57.685 47.619 0.00 0.00 0.00 3.67
39 40 2.217510 ACCACGATCCACTAGACACT 57.782 50.000 0.00 0.00 0.00 3.55
40 41 3.361281 ACCACGATCCACTAGACACTA 57.639 47.619 0.00 0.00 0.00 2.74
41 42 3.015327 ACCACGATCCACTAGACACTAC 58.985 50.000 0.00 0.00 0.00 2.73
42 43 2.031807 CCACGATCCACTAGACACTACG 59.968 54.545 0.00 0.00 0.00 3.51
43 44 2.031807 CACGATCCACTAGACACTACGG 59.968 54.545 0.00 0.00 0.00 4.02
44 45 2.286872 CGATCCACTAGACACTACGGT 58.713 52.381 0.00 0.00 0.00 4.83
45 46 2.681848 CGATCCACTAGACACTACGGTT 59.318 50.000 0.00 0.00 0.00 4.44
46 47 3.873361 CGATCCACTAGACACTACGGTTA 59.127 47.826 0.00 0.00 0.00 2.85
47 48 4.025061 CGATCCACTAGACACTACGGTTAG 60.025 50.000 0.00 0.00 0.00 2.34
48 49 3.614092 TCCACTAGACACTACGGTTAGG 58.386 50.000 0.00 0.00 0.00 2.69
49 50 2.098770 CCACTAGACACTACGGTTAGGC 59.901 54.545 0.00 0.00 0.00 3.93
50 51 2.751259 CACTAGACACTACGGTTAGGCA 59.249 50.000 0.00 0.00 0.00 4.75
51 52 3.015327 ACTAGACACTACGGTTAGGCAG 58.985 50.000 0.00 0.00 0.00 4.85
52 53 1.183549 AGACACTACGGTTAGGCAGG 58.816 55.000 0.00 0.00 0.00 4.85
53 54 0.175073 GACACTACGGTTAGGCAGGG 59.825 60.000 0.00 0.00 0.00 4.45
54 55 0.543646 ACACTACGGTTAGGCAGGGT 60.544 55.000 0.00 0.00 0.00 4.34
55 56 0.611714 CACTACGGTTAGGCAGGGTT 59.388 55.000 0.00 0.00 0.00 4.11
56 57 0.611714 ACTACGGTTAGGCAGGGTTG 59.388 55.000 0.00 0.00 0.00 3.77
57 58 0.611714 CTACGGTTAGGCAGGGTTGT 59.388 55.000 0.00 0.00 0.00 3.32
58 59 0.322322 TACGGTTAGGCAGGGTTGTG 59.678 55.000 0.00 0.00 0.00 3.33
59 60 1.373435 CGGTTAGGCAGGGTTGTGA 59.627 57.895 0.00 0.00 0.00 3.58
60 61 0.673644 CGGTTAGGCAGGGTTGTGAG 60.674 60.000 0.00 0.00 0.00 3.51
61 62 0.322546 GGTTAGGCAGGGTTGTGAGG 60.323 60.000 0.00 0.00 0.00 3.86
62 63 0.322546 GTTAGGCAGGGTTGTGAGGG 60.323 60.000 0.00 0.00 0.00 4.30
63 64 0.474854 TTAGGCAGGGTTGTGAGGGA 60.475 55.000 0.00 0.00 0.00 4.20
64 65 0.474854 TAGGCAGGGTTGTGAGGGAA 60.475 55.000 0.00 0.00 0.00 3.97
65 66 1.152830 GGCAGGGTTGTGAGGGAAA 59.847 57.895 0.00 0.00 0.00 3.13
66 67 0.251787 GGCAGGGTTGTGAGGGAAAT 60.252 55.000 0.00 0.00 0.00 2.17
67 68 1.632589 GCAGGGTTGTGAGGGAAATT 58.367 50.000 0.00 0.00 0.00 1.82
68 69 2.556559 GGCAGGGTTGTGAGGGAAATTA 60.557 50.000 0.00 0.00 0.00 1.40
69 70 2.492088 GCAGGGTTGTGAGGGAAATTAC 59.508 50.000 0.00 0.00 0.00 1.89
70 71 3.089284 CAGGGTTGTGAGGGAAATTACC 58.911 50.000 0.00 0.00 0.00 2.85
71 72 2.089201 GGGTTGTGAGGGAAATTACCG 58.911 52.381 0.00 0.00 0.00 4.02
72 73 2.290450 GGGTTGTGAGGGAAATTACCGA 60.290 50.000 0.00 0.00 0.00 4.69
73 74 2.745821 GGTTGTGAGGGAAATTACCGAC 59.254 50.000 0.00 0.00 0.00 4.79
74 75 2.373540 TGTGAGGGAAATTACCGACG 57.626 50.000 0.00 0.00 0.00 5.12
75 76 1.004595 GTGAGGGAAATTACCGACGC 58.995 55.000 0.00 0.00 0.00 5.19
76 77 0.899720 TGAGGGAAATTACCGACGCT 59.100 50.000 0.00 0.00 0.00 5.07
77 78 1.287425 GAGGGAAATTACCGACGCTG 58.713 55.000 0.00 0.00 0.00 5.18
78 79 0.611714 AGGGAAATTACCGACGCTGT 59.388 50.000 0.00 0.00 0.00 4.40
79 80 1.004595 GGGAAATTACCGACGCTGTC 58.995 55.000 0.00 0.00 0.00 3.51
91 92 2.732094 GCTGTCGCGTACAACGGT 60.732 61.111 5.77 0.00 42.82 4.83
92 93 1.442520 GCTGTCGCGTACAACGGTA 60.443 57.895 5.77 0.00 42.82 4.02
93 94 1.003262 GCTGTCGCGTACAACGGTAA 61.003 55.000 5.77 0.00 42.82 2.85
94 95 1.407434 CTGTCGCGTACAACGGTAAA 58.593 50.000 5.77 0.00 42.82 2.01
95 96 1.786004 CTGTCGCGTACAACGGTAAAA 59.214 47.619 5.77 0.00 42.82 1.52
96 97 1.786004 TGTCGCGTACAACGGTAAAAG 59.214 47.619 5.77 0.00 42.82 2.27
97 98 1.124839 GTCGCGTACAACGGTAAAAGG 59.875 52.381 5.77 0.00 42.82 3.11
98 99 0.179243 CGCGTACAACGGTAAAAGGC 60.179 55.000 0.00 0.00 42.82 4.35
99 100 1.150827 GCGTACAACGGTAAAAGGCT 58.849 50.000 1.25 0.00 42.82 4.58
100 101 1.136169 GCGTACAACGGTAAAAGGCTG 60.136 52.381 1.25 0.00 42.82 4.85
101 102 2.137523 CGTACAACGGTAAAAGGCTGT 58.862 47.619 0.00 0.00 38.08 4.40
102 103 2.156310 CGTACAACGGTAAAAGGCTGTC 59.844 50.000 0.00 0.00 38.08 3.51
103 104 1.223187 ACAACGGTAAAAGGCTGTCG 58.777 50.000 0.00 0.00 0.00 4.35
104 105 0.110373 CAACGGTAAAAGGCTGTCGC 60.110 55.000 0.00 0.00 0.00 5.19
105 106 0.250166 AACGGTAAAAGGCTGTCGCT 60.250 50.000 0.00 0.00 36.09 4.93
106 107 0.604578 ACGGTAAAAGGCTGTCGCTA 59.395 50.000 0.00 0.00 36.09 4.26
107 108 1.001181 ACGGTAAAAGGCTGTCGCTAA 59.999 47.619 0.00 0.00 36.09 3.09
108 109 1.659098 CGGTAAAAGGCTGTCGCTAAG 59.341 52.381 0.00 0.00 36.09 2.18
109 110 2.673043 CGGTAAAAGGCTGTCGCTAAGA 60.673 50.000 0.00 0.00 36.09 2.10
110 111 3.332034 GGTAAAAGGCTGTCGCTAAGAA 58.668 45.455 0.00 0.00 36.09 2.52
111 112 3.371285 GGTAAAAGGCTGTCGCTAAGAAG 59.629 47.826 0.00 0.00 36.09 2.85
112 113 1.443802 AAAGGCTGTCGCTAAGAAGC 58.556 50.000 0.00 0.00 45.86 3.86
135 136 2.922740 TTTTTGAGGCTACAGACCGT 57.077 45.000 0.00 0.00 0.00 4.83
136 137 2.163818 TTTTGAGGCTACAGACCGTG 57.836 50.000 0.00 0.00 0.00 4.94
137 138 1.045407 TTTGAGGCTACAGACCGTGT 58.955 50.000 0.00 0.00 43.86 4.49
138 139 0.317160 TTGAGGCTACAGACCGTGTG 59.683 55.000 0.00 0.00 40.69 3.82
139 140 0.826256 TGAGGCTACAGACCGTGTGT 60.826 55.000 6.55 6.55 40.69 3.72
140 141 0.109226 GAGGCTACAGACCGTGTGTC 60.109 60.000 4.29 0.00 44.82 3.67
162 163 7.918076 TGTCAAATTATAGACACCCTTCTTCT 58.082 34.615 4.69 0.00 39.65 2.85
163 164 8.041323 TGTCAAATTATAGACACCCTTCTTCTC 58.959 37.037 4.69 0.00 39.65 2.87
164 165 8.261522 GTCAAATTATAGACACCCTTCTTCTCT 58.738 37.037 0.00 0.00 34.93 3.10
165 166 8.478877 TCAAATTATAGACACCCTTCTTCTCTC 58.521 37.037 0.00 0.00 0.00 3.20
166 167 8.482128 CAAATTATAGACACCCTTCTTCTCTCT 58.518 37.037 0.00 0.00 0.00 3.10
167 168 7.833285 ATTATAGACACCCTTCTTCTCTCTC 57.167 40.000 0.00 0.00 0.00 3.20
168 169 3.534357 AGACACCCTTCTTCTCTCTCA 57.466 47.619 0.00 0.00 0.00 3.27
169 170 4.059773 AGACACCCTTCTTCTCTCTCAT 57.940 45.455 0.00 0.00 0.00 2.90
170 171 4.023291 AGACACCCTTCTTCTCTCTCATC 58.977 47.826 0.00 0.00 0.00 2.92
171 172 3.766591 GACACCCTTCTTCTCTCTCATCA 59.233 47.826 0.00 0.00 0.00 3.07
172 173 4.163427 ACACCCTTCTTCTCTCTCATCAA 58.837 43.478 0.00 0.00 0.00 2.57
173 174 4.782156 ACACCCTTCTTCTCTCTCATCAAT 59.218 41.667 0.00 0.00 0.00 2.57
174 175 5.104982 ACACCCTTCTTCTCTCTCATCAATC 60.105 44.000 0.00 0.00 0.00 2.67
175 176 5.129155 CACCCTTCTTCTCTCTCATCAATCT 59.871 44.000 0.00 0.00 0.00 2.40
176 177 5.363580 ACCCTTCTTCTCTCTCATCAATCTC 59.636 44.000 0.00 0.00 0.00 2.75
177 178 5.599656 CCCTTCTTCTCTCTCATCAATCTCT 59.400 44.000 0.00 0.00 0.00 3.10
178 179 6.239120 CCCTTCTTCTCTCTCATCAATCTCTC 60.239 46.154 0.00 0.00 0.00 3.20
179 180 6.548622 CCTTCTTCTCTCTCATCAATCTCTCT 59.451 42.308 0.00 0.00 0.00 3.10
180 181 7.069085 CCTTCTTCTCTCTCATCAATCTCTCTT 59.931 40.741 0.00 0.00 0.00 2.85
181 182 7.572523 TCTTCTCTCTCATCAATCTCTCTTC 57.427 40.000 0.00 0.00 0.00 2.87
182 183 7.348815 TCTTCTCTCTCATCAATCTCTCTTCT 58.651 38.462 0.00 0.00 0.00 2.85
183 184 7.500227 TCTTCTCTCTCATCAATCTCTCTTCTC 59.500 40.741 0.00 0.00 0.00 2.87
184 185 6.064060 TCTCTCTCATCAATCTCTCTTCTCC 58.936 44.000 0.00 0.00 0.00 3.71
185 186 5.764432 TCTCTCATCAATCTCTCTTCTCCA 58.236 41.667 0.00 0.00 0.00 3.86
186 187 5.593909 TCTCTCATCAATCTCTCTTCTCCAC 59.406 44.000 0.00 0.00 0.00 4.02
187 188 4.648762 TCTCATCAATCTCTCTTCTCCACC 59.351 45.833 0.00 0.00 0.00 4.61
188 189 4.618635 TCATCAATCTCTCTTCTCCACCT 58.381 43.478 0.00 0.00 0.00 4.00
189 190 5.770919 TCATCAATCTCTCTTCTCCACCTA 58.229 41.667 0.00 0.00 0.00 3.08
190 191 5.832595 TCATCAATCTCTCTTCTCCACCTAG 59.167 44.000 0.00 0.00 0.00 3.02
191 192 5.458451 TCAATCTCTCTTCTCCACCTAGA 57.542 43.478 0.00 0.00 0.00 2.43
192 193 6.024563 TCAATCTCTCTTCTCCACCTAGAT 57.975 41.667 0.00 0.00 0.00 1.98
193 194 7.155442 TCAATCTCTCTTCTCCACCTAGATA 57.845 40.000 0.00 0.00 0.00 1.98
194 195 7.587258 TCAATCTCTCTTCTCCACCTAGATAA 58.413 38.462 0.00 0.00 0.00 1.75
195 196 8.061920 TCAATCTCTCTTCTCCACCTAGATAAA 58.938 37.037 0.00 0.00 0.00 1.40
196 197 8.869109 CAATCTCTCTTCTCCACCTAGATAAAT 58.131 37.037 0.00 0.00 0.00 1.40
197 198 9.445973 AATCTCTCTTCTCCACCTAGATAAATT 57.554 33.333 0.00 0.00 0.00 1.82
198 199 8.846423 TCTCTCTTCTCCACCTAGATAAATTT 57.154 34.615 0.00 0.00 0.00 1.82
199 200 8.919145 TCTCTCTTCTCCACCTAGATAAATTTC 58.081 37.037 0.00 0.00 0.00 2.17
200 201 7.717568 TCTCTTCTCCACCTAGATAAATTTCG 58.282 38.462 0.00 0.00 0.00 3.46
201 202 7.342284 TCTCTTCTCCACCTAGATAAATTTCGT 59.658 37.037 0.00 0.00 0.00 3.85
202 203 8.529424 TCTTCTCCACCTAGATAAATTTCGTA 57.471 34.615 0.00 0.00 0.00 3.43
203 204 8.411683 TCTTCTCCACCTAGATAAATTTCGTAC 58.588 37.037 0.00 0.00 0.00 3.67
204 205 6.732154 TCTCCACCTAGATAAATTTCGTACG 58.268 40.000 9.53 9.53 0.00 3.67
205 206 6.319658 TCTCCACCTAGATAAATTTCGTACGT 59.680 38.462 16.05 0.00 0.00 3.57
206 207 6.267817 TCCACCTAGATAAATTTCGTACGTG 58.732 40.000 16.05 0.42 0.00 4.49
207 208 5.461078 CCACCTAGATAAATTTCGTACGTGG 59.539 44.000 16.05 6.28 0.00 4.94
208 209 6.038356 CACCTAGATAAATTTCGTACGTGGT 58.962 40.000 16.05 0.00 0.00 4.16
209 210 7.195646 CACCTAGATAAATTTCGTACGTGGTA 58.804 38.462 16.05 2.60 0.00 3.25
210 211 7.701924 CACCTAGATAAATTTCGTACGTGGTAA 59.298 37.037 16.05 6.28 0.00 2.85
211 212 8.250332 ACCTAGATAAATTTCGTACGTGGTAAA 58.750 33.333 16.05 8.70 0.00 2.01
212 213 8.534778 CCTAGATAAATTTCGTACGTGGTAAAC 58.465 37.037 16.05 2.76 0.00 2.01
213 214 7.294676 AGATAAATTTCGTACGTGGTAAACC 57.705 36.000 16.05 1.11 0.00 3.27
214 215 7.099120 AGATAAATTTCGTACGTGGTAAACCT 58.901 34.615 16.05 3.41 36.82 3.50
215 216 7.603784 AGATAAATTTCGTACGTGGTAAACCTT 59.396 33.333 16.05 8.01 36.82 3.50
216 217 8.770438 ATAAATTTCGTACGTGGTAAACCTTA 57.230 30.769 16.05 9.68 36.82 2.69
217 218 7.671495 AAATTTCGTACGTGGTAAACCTTAT 57.329 32.000 16.05 0.00 36.82 1.73
218 219 8.770438 AAATTTCGTACGTGGTAAACCTTATA 57.230 30.769 16.05 0.00 36.82 0.98
219 220 7.992180 ATTTCGTACGTGGTAAACCTTATAG 57.008 36.000 16.05 0.00 36.82 1.31
220 221 6.751514 TTCGTACGTGGTAAACCTTATAGA 57.248 37.500 16.05 0.00 36.82 1.98
221 222 6.119144 TCGTACGTGGTAAACCTTATAGAC 57.881 41.667 16.05 0.00 36.82 2.59
222 223 5.645929 TCGTACGTGGTAAACCTTATAGACA 59.354 40.000 16.05 0.00 36.82 3.41
223 224 6.150307 TCGTACGTGGTAAACCTTATAGACAA 59.850 38.462 16.05 0.00 36.82 3.18
224 225 6.251376 CGTACGTGGTAAACCTTATAGACAAC 59.749 42.308 7.22 0.00 36.82 3.32
225 226 6.350629 ACGTGGTAAACCTTATAGACAACT 57.649 37.500 0.02 0.00 36.82 3.16
226 227 6.161381 ACGTGGTAAACCTTATAGACAACTG 58.839 40.000 0.02 0.00 36.82 3.16
227 228 6.015180 ACGTGGTAAACCTTATAGACAACTGA 60.015 38.462 0.02 0.00 36.82 3.41
228 229 6.530534 CGTGGTAAACCTTATAGACAACTGAG 59.469 42.308 0.02 0.00 36.82 3.35
229 230 7.384477 GTGGTAAACCTTATAGACAACTGAGT 58.616 38.462 0.02 0.00 36.82 3.41
230 231 8.526147 GTGGTAAACCTTATAGACAACTGAGTA 58.474 37.037 0.02 0.00 36.82 2.59
231 232 8.746530 TGGTAAACCTTATAGACAACTGAGTAG 58.253 37.037 0.02 0.00 36.82 2.57
232 233 8.196103 GGTAAACCTTATAGACAACTGAGTAGG 58.804 40.741 0.00 0.00 0.00 3.18
233 234 5.855740 ACCTTATAGACAACTGAGTAGGC 57.144 43.478 0.00 0.00 0.00 3.93
234 235 5.269991 ACCTTATAGACAACTGAGTAGGCA 58.730 41.667 0.00 0.00 0.00 4.75
235 236 5.127356 ACCTTATAGACAACTGAGTAGGCAC 59.873 44.000 0.00 0.00 0.00 5.01
236 237 5.452077 CCTTATAGACAACTGAGTAGGCACC 60.452 48.000 0.00 0.00 0.00 5.01
237 238 0.603569 AGACAACTGAGTAGGCACCG 59.396 55.000 0.00 0.00 0.00 4.94
238 239 0.317479 GACAACTGAGTAGGCACCGT 59.683 55.000 0.00 0.00 0.00 4.83
239 240 0.756903 ACAACTGAGTAGGCACCGTT 59.243 50.000 0.00 0.00 0.00 4.44
240 241 1.148310 CAACTGAGTAGGCACCGTTG 58.852 55.000 0.00 0.00 0.00 4.10
241 242 0.756903 AACTGAGTAGGCACCGTTGT 59.243 50.000 0.00 0.00 0.00 3.32
242 243 1.624336 ACTGAGTAGGCACCGTTGTA 58.376 50.000 0.00 0.00 0.00 2.41
243 244 1.271656 ACTGAGTAGGCACCGTTGTAC 59.728 52.381 0.00 0.00 0.00 2.90
244 245 1.271379 CTGAGTAGGCACCGTTGTACA 59.729 52.381 0.00 0.00 0.00 2.90
245 246 1.897133 TGAGTAGGCACCGTTGTACAT 59.103 47.619 0.00 0.00 0.00 2.29
246 247 2.268298 GAGTAGGCACCGTTGTACATG 58.732 52.381 0.00 0.00 0.00 3.21
247 248 0.725117 GTAGGCACCGTTGTACATGC 59.275 55.000 10.12 10.12 37.35 4.06
249 250 2.874751 GCACCGTTGTACATGCCC 59.125 61.111 7.77 0.00 31.71 5.36
250 251 1.674322 GCACCGTTGTACATGCCCT 60.674 57.895 7.77 0.00 31.71 5.19
251 252 1.644786 GCACCGTTGTACATGCCCTC 61.645 60.000 7.77 0.00 31.71 4.30
252 253 1.079405 ACCGTTGTACATGCCCTCG 60.079 57.895 0.00 0.00 0.00 4.63
253 254 1.079405 CCGTTGTACATGCCCTCGT 60.079 57.895 0.00 0.00 0.00 4.18
254 255 0.173935 CCGTTGTACATGCCCTCGTA 59.826 55.000 0.00 0.00 0.00 3.43
255 256 1.404449 CCGTTGTACATGCCCTCGTAA 60.404 52.381 0.00 0.00 0.00 3.18
256 257 2.339418 CGTTGTACATGCCCTCGTAAA 58.661 47.619 0.00 0.00 0.00 2.01
257 258 2.093152 CGTTGTACATGCCCTCGTAAAC 59.907 50.000 0.00 0.00 0.00 2.01
258 259 3.332034 GTTGTACATGCCCTCGTAAACT 58.668 45.455 0.00 0.00 0.00 2.66
259 260 2.967362 TGTACATGCCCTCGTAAACTG 58.033 47.619 0.00 0.00 0.00 3.16
260 261 2.277084 GTACATGCCCTCGTAAACTGG 58.723 52.381 0.00 0.00 0.00 4.00
261 262 0.981183 ACATGCCCTCGTAAACTGGA 59.019 50.000 0.00 0.00 0.00 3.86
262 263 1.338769 ACATGCCCTCGTAAACTGGAC 60.339 52.381 0.00 0.00 0.00 4.02
263 264 0.252197 ATGCCCTCGTAAACTGGACC 59.748 55.000 0.00 0.00 0.00 4.46
264 265 1.122632 TGCCCTCGTAAACTGGACCA 61.123 55.000 0.00 0.00 0.00 4.02
265 266 0.035739 GCCCTCGTAAACTGGACCAA 59.964 55.000 0.00 0.00 0.00 3.67
266 267 1.804601 CCCTCGTAAACTGGACCAAC 58.195 55.000 0.00 0.00 0.00 3.77
267 268 1.609841 CCCTCGTAAACTGGACCAACC 60.610 57.143 0.00 0.00 39.54 3.77
268 269 1.346722 CCTCGTAAACTGGACCAACCT 59.653 52.381 0.00 0.00 39.86 3.50
269 270 2.612221 CCTCGTAAACTGGACCAACCTC 60.612 54.545 0.00 0.00 39.86 3.85
270 271 2.299297 CTCGTAAACTGGACCAACCTCT 59.701 50.000 0.00 0.00 39.86 3.69
271 272 2.298163 TCGTAAACTGGACCAACCTCTC 59.702 50.000 0.00 0.00 39.86 3.20
272 273 2.299297 CGTAAACTGGACCAACCTCTCT 59.701 50.000 0.00 0.00 39.86 3.10
273 274 3.508793 CGTAAACTGGACCAACCTCTCTA 59.491 47.826 0.00 0.00 39.86 2.43
274 275 4.159879 CGTAAACTGGACCAACCTCTCTAT 59.840 45.833 0.00 0.00 39.86 1.98
275 276 4.828072 AAACTGGACCAACCTCTCTATC 57.172 45.455 0.00 0.00 39.86 2.08
276 277 3.767309 ACTGGACCAACCTCTCTATCT 57.233 47.619 0.00 0.00 39.86 1.98
277 278 4.883021 ACTGGACCAACCTCTCTATCTA 57.117 45.455 0.00 0.00 39.86 1.98
278 279 5.411103 ACTGGACCAACCTCTCTATCTAT 57.589 43.478 0.00 0.00 39.86 1.98
279 280 5.782925 ACTGGACCAACCTCTCTATCTATT 58.217 41.667 0.00 0.00 39.86 1.73
280 281 5.836358 ACTGGACCAACCTCTCTATCTATTC 59.164 44.000 0.00 0.00 39.86 1.75
281 282 5.777449 TGGACCAACCTCTCTATCTATTCA 58.223 41.667 0.00 0.00 39.86 2.57
282 283 6.202331 TGGACCAACCTCTCTATCTATTCAA 58.798 40.000 0.00 0.00 39.86 2.69
283 284 6.846505 TGGACCAACCTCTCTATCTATTCAAT 59.153 38.462 0.00 0.00 39.86 2.57
284 285 7.158021 GGACCAACCTCTCTATCTATTCAATG 58.842 42.308 0.00 0.00 35.41 2.82
285 286 7.015682 GGACCAACCTCTCTATCTATTCAATGA 59.984 40.741 0.00 0.00 35.41 2.57
286 287 8.324191 ACCAACCTCTCTATCTATTCAATGAA 57.676 34.615 0.00 0.00 0.00 2.57
287 288 8.943085 ACCAACCTCTCTATCTATTCAATGAAT 58.057 33.333 13.43 13.43 36.20 2.57
288 289 9.790344 CCAACCTCTCTATCTATTCAATGAATT 57.210 33.333 14.15 0.00 33.95 2.17
294 295 9.645059 TCTCTATCTATTCAATGAATTTAGCGG 57.355 33.333 14.15 9.08 33.95 5.52
295 296 9.429359 CTCTATCTATTCAATGAATTTAGCGGT 57.571 33.333 14.15 0.00 33.95 5.68
296 297 9.778741 TCTATCTATTCAATGAATTTAGCGGTT 57.221 29.630 14.15 0.00 33.95 4.44
298 299 8.682936 ATCTATTCAATGAATTTAGCGGTTCT 57.317 30.769 14.15 0.00 33.95 3.01
299 300 8.142994 TCTATTCAATGAATTTAGCGGTTCTC 57.857 34.615 14.15 0.00 33.95 2.87
300 301 5.560966 TTCAATGAATTTAGCGGTTCTCC 57.439 39.130 0.00 0.00 0.00 3.71
301 302 4.584874 TCAATGAATTTAGCGGTTCTCCA 58.415 39.130 0.00 0.00 0.00 3.86
302 303 4.635765 TCAATGAATTTAGCGGTTCTCCAG 59.364 41.667 0.00 0.00 0.00 3.86
303 304 2.356135 TGAATTTAGCGGTTCTCCAGC 58.644 47.619 0.00 0.00 34.96 4.85
304 305 2.027192 TGAATTTAGCGGTTCTCCAGCT 60.027 45.455 0.00 8.14 42.60 4.24
305 306 3.196901 TGAATTTAGCGGTTCTCCAGCTA 59.803 43.478 0.00 0.00 41.24 3.32
306 307 3.906720 ATTTAGCGGTTCTCCAGCTAA 57.093 42.857 14.34 14.34 44.86 3.09
307 308 2.961526 TTAGCGGTTCTCCAGCTAAG 57.038 50.000 14.34 0.00 43.44 2.18
308 309 1.112113 TAGCGGTTCTCCAGCTAAGG 58.888 55.000 0.00 0.00 40.19 2.69
309 310 1.815840 GCGGTTCTCCAGCTAAGGC 60.816 63.158 0.00 0.00 39.06 4.35
321 322 2.246719 GCTAAGGCTGGTCATAGTGG 57.753 55.000 0.00 0.00 35.22 4.00
322 323 1.202698 GCTAAGGCTGGTCATAGTGGG 60.203 57.143 0.00 0.00 35.22 4.61
323 324 1.417890 CTAAGGCTGGTCATAGTGGGG 59.582 57.143 0.00 0.00 0.00 4.96
324 325 0.550147 AAGGCTGGTCATAGTGGGGT 60.550 55.000 0.00 0.00 0.00 4.95
325 326 0.341961 AGGCTGGTCATAGTGGGGTA 59.658 55.000 0.00 0.00 0.00 3.69
326 327 1.061346 AGGCTGGTCATAGTGGGGTAT 60.061 52.381 0.00 0.00 0.00 2.73
327 328 1.072331 GGCTGGTCATAGTGGGGTATG 59.928 57.143 0.00 0.00 0.00 2.39
328 329 2.047061 GCTGGTCATAGTGGGGTATGA 58.953 52.381 0.00 0.00 37.13 2.15
337 338 3.759815 AGTGGGGTATGACACTAGTCT 57.240 47.619 0.00 0.00 45.45 3.24
338 339 4.875578 AGTGGGGTATGACACTAGTCTA 57.124 45.455 0.00 0.00 45.45 2.59
339 340 5.202746 AGTGGGGTATGACACTAGTCTAA 57.797 43.478 0.00 0.00 45.45 2.10
340 341 5.778542 AGTGGGGTATGACACTAGTCTAAT 58.221 41.667 0.00 0.00 45.45 1.73
341 342 6.203072 AGTGGGGTATGACACTAGTCTAATT 58.797 40.000 0.00 0.00 45.45 1.40
342 343 6.672657 AGTGGGGTATGACACTAGTCTAATTT 59.327 38.462 0.00 0.00 45.45 1.82
343 344 7.842743 AGTGGGGTATGACACTAGTCTAATTTA 59.157 37.037 0.00 0.00 45.45 1.40
344 345 7.924947 GTGGGGTATGACACTAGTCTAATTTAC 59.075 40.741 0.00 0.00 45.20 2.01
345 346 7.842743 TGGGGTATGACACTAGTCTAATTTACT 59.157 37.037 0.00 0.00 45.20 2.24
346 347 9.359653 GGGGTATGACACTAGTCTAATTTACTA 57.640 37.037 0.00 0.00 45.20 1.82
367 368 9.642327 TTACTACTTTCATAATGCGAAGTAACA 57.358 29.630 0.00 0.00 35.05 2.41
368 369 8.718102 ACTACTTTCATAATGCGAAGTAACAT 57.282 30.769 0.00 0.00 35.05 2.71
369 370 8.604035 ACTACTTTCATAATGCGAAGTAACATG 58.396 33.333 0.00 0.00 35.05 3.21
370 371 7.609760 ACTTTCATAATGCGAAGTAACATGA 57.390 32.000 0.00 0.00 31.05 3.07
371 372 8.213518 ACTTTCATAATGCGAAGTAACATGAT 57.786 30.769 0.00 0.00 29.86 2.45
372 373 9.325198 ACTTTCATAATGCGAAGTAACATGATA 57.675 29.630 0.00 0.00 29.86 2.15
373 374 9.803130 CTTTCATAATGCGAAGTAACATGATAG 57.197 33.333 0.00 0.00 29.86 2.08
374 375 8.887036 TTCATAATGCGAAGTAACATGATAGT 57.113 30.769 0.00 0.00 29.86 2.12
375 376 9.974980 TTCATAATGCGAAGTAACATGATAGTA 57.025 29.630 0.00 0.00 29.86 1.82
376 377 9.626045 TCATAATGCGAAGTAACATGATAGTAG 57.374 33.333 0.00 0.00 0.00 2.57
377 378 9.411801 CATAATGCGAAGTAACATGATAGTAGT 57.588 33.333 0.00 0.00 0.00 2.73
378 379 7.700322 AATGCGAAGTAACATGATAGTAGTG 57.300 36.000 0.00 0.00 0.00 2.74
379 380 6.203808 TGCGAAGTAACATGATAGTAGTGT 57.796 37.500 0.00 0.00 0.00 3.55
380 381 6.263344 TGCGAAGTAACATGATAGTAGTGTC 58.737 40.000 0.00 0.00 0.00 3.67
381 382 6.127842 TGCGAAGTAACATGATAGTAGTGTCA 60.128 38.462 0.00 0.00 0.00 3.58
382 383 6.918569 GCGAAGTAACATGATAGTAGTGTCAT 59.081 38.462 0.00 4.08 35.01 3.06
383 384 8.074370 GCGAAGTAACATGATAGTAGTGTCATA 58.926 37.037 9.25 0.00 33.03 2.15
384 385 9.600646 CGAAGTAACATGATAGTAGTGTCATAG 57.399 37.037 9.25 7.16 33.03 2.23
388 389 9.847706 GTAACATGATAGTAGTGTCATAGATGG 57.152 37.037 9.25 0.82 33.03 3.51
389 390 6.929625 ACATGATAGTAGTGTCATAGATGGC 58.070 40.000 9.25 0.00 33.03 4.40
390 391 6.723515 ACATGATAGTAGTGTCATAGATGGCT 59.276 38.462 9.25 0.00 33.03 4.75
391 392 7.234371 ACATGATAGTAGTGTCATAGATGGCTT 59.766 37.037 9.25 0.00 33.03 4.35
392 393 7.220741 TGATAGTAGTGTCATAGATGGCTTC 57.779 40.000 0.00 0.00 32.56 3.86
393 394 6.777580 TGATAGTAGTGTCATAGATGGCTTCA 59.222 38.462 3.03 0.00 32.56 3.02
394 395 7.452813 TGATAGTAGTGTCATAGATGGCTTCAT 59.547 37.037 3.03 0.00 32.56 2.57
395 396 6.491714 AGTAGTGTCATAGATGGCTTCATT 57.508 37.500 3.03 0.00 32.56 2.57
396 397 6.893583 AGTAGTGTCATAGATGGCTTCATTT 58.106 36.000 3.03 0.00 32.56 2.32
397 398 8.023021 AGTAGTGTCATAGATGGCTTCATTTA 57.977 34.615 3.03 0.00 32.56 1.40
398 399 8.654997 AGTAGTGTCATAGATGGCTTCATTTAT 58.345 33.333 3.03 0.00 32.56 1.40
399 400 9.277783 GTAGTGTCATAGATGGCTTCATTTATT 57.722 33.333 3.03 0.00 32.56 1.40
401 402 9.499479 AGTGTCATAGATGGCTTCATTTATTAG 57.501 33.333 3.03 0.00 32.56 1.73
402 403 8.233190 GTGTCATAGATGGCTTCATTTATTAGC 58.767 37.037 3.03 0.00 32.56 3.09
403 404 8.159447 TGTCATAGATGGCTTCATTTATTAGCT 58.841 33.333 3.03 0.00 35.30 3.32
404 405 9.007901 GTCATAGATGGCTTCATTTATTAGCTT 57.992 33.333 0.00 0.00 35.30 3.74
405 406 9.006839 TCATAGATGGCTTCATTTATTAGCTTG 57.993 33.333 0.00 0.00 35.30 4.01
406 407 8.790718 CATAGATGGCTTCATTTATTAGCTTGT 58.209 33.333 0.00 0.00 35.30 3.16
408 409 8.388484 AGATGGCTTCATTTATTAGCTTGTAG 57.612 34.615 0.00 0.00 35.30 2.74
409 410 8.213679 AGATGGCTTCATTTATTAGCTTGTAGA 58.786 33.333 0.00 0.00 35.30 2.59
410 411 7.553881 TGGCTTCATTTATTAGCTTGTAGAC 57.446 36.000 0.00 0.00 35.30 2.59
411 412 7.338710 TGGCTTCATTTATTAGCTTGTAGACT 58.661 34.615 0.00 0.00 35.30 3.24
412 413 7.495934 TGGCTTCATTTATTAGCTTGTAGACTC 59.504 37.037 0.00 0.00 35.30 3.36
413 414 7.495934 GGCTTCATTTATTAGCTTGTAGACTCA 59.504 37.037 0.00 0.00 35.30 3.41
414 415 9.050601 GCTTCATTTATTAGCTTGTAGACTCAT 57.949 33.333 0.00 0.00 32.26 2.90
420 421 9.587772 TTTATTAGCTTGTAGACTCATCTTGTC 57.412 33.333 0.00 0.00 36.29 3.18
421 422 6.842437 TTAGCTTGTAGACTCATCTTGTCT 57.158 37.500 0.00 0.00 45.48 3.41
422 423 5.736951 AGCTTGTAGACTCATCTTGTCTT 57.263 39.130 1.67 0.00 41.45 3.01
423 424 5.477510 AGCTTGTAGACTCATCTTGTCTTG 58.522 41.667 1.67 0.00 41.45 3.02
424 425 5.244851 AGCTTGTAGACTCATCTTGTCTTGA 59.755 40.000 1.67 0.00 41.45 3.02
425 426 5.576384 GCTTGTAGACTCATCTTGTCTTGAG 59.424 44.000 1.67 0.00 41.45 3.02
426 427 6.571344 GCTTGTAGACTCATCTTGTCTTGAGA 60.571 42.308 6.91 0.00 41.45 3.27
427 428 6.901081 TGTAGACTCATCTTGTCTTGAGAA 57.099 37.500 6.91 0.00 41.45 2.87
428 429 6.918626 TGTAGACTCATCTTGTCTTGAGAAG 58.081 40.000 6.91 1.64 41.45 2.85
429 430 4.819769 AGACTCATCTTGTCTTGAGAAGC 58.180 43.478 6.91 0.00 41.45 3.86
430 431 3.583806 ACTCATCTTGTCTTGAGAAGCG 58.416 45.455 6.91 0.00 41.53 4.68
431 432 2.341257 TCATCTTGTCTTGAGAAGCGC 58.659 47.619 0.00 0.00 0.00 5.92
432 433 2.028658 TCATCTTGTCTTGAGAAGCGCT 60.029 45.455 2.64 2.64 0.00 5.92
433 434 3.193479 TCATCTTGTCTTGAGAAGCGCTA 59.807 43.478 12.05 0.00 0.00 4.26
434 435 3.876274 TCTTGTCTTGAGAAGCGCTAT 57.124 42.857 12.05 1.33 0.00 2.97
435 436 3.515630 TCTTGTCTTGAGAAGCGCTATG 58.484 45.455 12.05 0.00 0.00 2.23
436 437 3.056536 TCTTGTCTTGAGAAGCGCTATGT 60.057 43.478 12.05 0.00 0.00 2.29
437 438 3.319137 TGTCTTGAGAAGCGCTATGTT 57.681 42.857 12.05 0.00 0.00 2.71
438 439 4.450082 TGTCTTGAGAAGCGCTATGTTA 57.550 40.909 12.05 0.00 0.00 2.41
439 440 4.174009 TGTCTTGAGAAGCGCTATGTTAC 58.826 43.478 12.05 4.27 0.00 2.50
440 441 4.174009 GTCTTGAGAAGCGCTATGTTACA 58.826 43.478 12.05 2.80 0.00 2.41
441 442 4.266502 GTCTTGAGAAGCGCTATGTTACAG 59.733 45.833 12.05 1.15 0.00 2.74
442 443 3.868757 TGAGAAGCGCTATGTTACAGT 57.131 42.857 12.05 0.00 0.00 3.55
443 444 4.976224 TGAGAAGCGCTATGTTACAGTA 57.024 40.909 12.05 0.00 0.00 2.74
444 445 5.319140 TGAGAAGCGCTATGTTACAGTAA 57.681 39.130 12.05 0.00 0.00 2.24
445 446 5.100259 TGAGAAGCGCTATGTTACAGTAAC 58.900 41.667 12.05 15.58 39.11 2.50
480 481 9.976776 TTACCACCTCACATTAAATATTTACCA 57.023 29.630 7.43 0.00 0.00 3.25
481 482 8.288689 ACCACCTCACATTAAATATTTACCAC 57.711 34.615 7.43 0.00 0.00 4.16
482 483 7.891183 ACCACCTCACATTAAATATTTACCACA 59.109 33.333 7.43 0.00 0.00 4.17
483 484 8.912988 CCACCTCACATTAAATATTTACCACAT 58.087 33.333 7.43 0.00 0.00 3.21
520 521 8.671384 TTTTGAAGTGCACTATGTTACTTACT 57.329 30.769 22.01 0.00 33.83 2.24
521 522 7.884816 TTGAAGTGCACTATGTTACTTACTC 57.115 36.000 22.01 9.74 33.83 2.59
522 523 6.395629 TGAAGTGCACTATGTTACTTACTCC 58.604 40.000 22.01 0.00 33.83 3.85
523 524 5.340439 AGTGCACTATGTTACTTACTCCC 57.660 43.478 20.16 0.00 0.00 4.30
524 525 4.775780 AGTGCACTATGTTACTTACTCCCA 59.224 41.667 20.16 0.00 0.00 4.37
525 526 5.247564 AGTGCACTATGTTACTTACTCCCAA 59.752 40.000 20.16 0.00 0.00 4.12
526 527 5.350640 GTGCACTATGTTACTTACTCCCAAC 59.649 44.000 10.32 0.00 0.00 3.77
527 528 5.247564 TGCACTATGTTACTTACTCCCAACT 59.752 40.000 0.00 0.00 0.00 3.16
528 529 6.438108 TGCACTATGTTACTTACTCCCAACTA 59.562 38.462 0.00 0.00 0.00 2.24
529 530 6.979238 GCACTATGTTACTTACTCCCAACTAG 59.021 42.308 0.00 0.00 0.00 2.57
530 531 6.979238 CACTATGTTACTTACTCCCAACTAGC 59.021 42.308 0.00 0.00 0.00 3.42
531 532 4.813750 TGTTACTTACTCCCAACTAGCC 57.186 45.455 0.00 0.00 0.00 3.93
532 533 4.422984 TGTTACTTACTCCCAACTAGCCT 58.577 43.478 0.00 0.00 0.00 4.58
533 534 5.582953 TGTTACTTACTCCCAACTAGCCTA 58.417 41.667 0.00 0.00 0.00 3.93
534 535 5.655532 TGTTACTTACTCCCAACTAGCCTAG 59.344 44.000 0.00 0.00 0.00 3.02
535 536 3.032459 ACTTACTCCCAACTAGCCTAGC 58.968 50.000 0.00 0.00 0.00 3.42
536 537 2.840640 TACTCCCAACTAGCCTAGCA 57.159 50.000 0.00 0.00 0.00 3.49
537 538 2.182516 ACTCCCAACTAGCCTAGCAT 57.817 50.000 0.00 0.00 0.00 3.79
538 539 2.482494 ACTCCCAACTAGCCTAGCATT 58.518 47.619 0.00 0.00 0.00 3.56
539 540 2.436173 ACTCCCAACTAGCCTAGCATTC 59.564 50.000 0.00 0.00 0.00 2.67
836 850 3.935828 GCCTGAATTTCTACTCCACTCAC 59.064 47.826 0.00 0.00 0.00 3.51
920 934 2.693864 CCTCTGGCAGGGATGGGT 60.694 66.667 17.99 0.00 38.91 4.51
921 935 2.311854 CCTCTGGCAGGGATGGGTT 61.312 63.158 17.99 0.00 38.91 4.11
1105 1203 3.172339 AGAGAGATTGTGCTGGTTCTCT 58.828 45.455 8.81 8.81 45.73 3.10
1111 1209 1.227943 GTGCTGGTTCTCTGTGCCA 60.228 57.895 0.00 0.00 0.00 4.92
1121 1219 4.988598 CTGTGCCAGGCGGTTCGT 62.989 66.667 7.03 0.00 33.28 3.85
1295 1393 5.707242 TGCTTCTATACTACTGATTCGGG 57.293 43.478 0.00 0.00 0.00 5.14
1297 1395 4.523558 GCTTCTATACTACTGATTCGGGGT 59.476 45.833 0.00 0.00 0.00 4.95
1342 1441 3.066900 CCTGTCTTCCTACACGAATCGAT 59.933 47.826 10.55 0.00 0.00 3.59
1421 1520 2.157738 GAATCTGGCTGCCCATACATC 58.842 52.381 17.53 3.48 41.21 3.06
1544 1646 7.586349 ACTGATTACCCATAGATGTTGGAAAT 58.414 34.615 0.00 0.00 36.26 2.17
1546 1648 7.581814 TGATTACCCATAGATGTTGGAAATGA 58.418 34.615 0.00 0.00 36.26 2.57
1658 1885 9.208022 GCTATGCTAGTACAATGAATTGATACA 57.792 33.333 9.94 0.68 40.14 2.29
1662 1889 7.279981 TGCTAGTACAATGAATTGATACACACC 59.720 37.037 9.94 1.81 40.14 4.16
1681 1908 2.289257 ACCACTACTACGGTTCCTTTGC 60.289 50.000 0.00 0.00 28.43 3.68
1712 1939 1.168714 CTCAGGTTGTTGCTAAGGGC 58.831 55.000 0.00 0.00 42.22 5.19
1801 2028 7.226918 TGTTTTAATGTGGTTAATCACGACTCA 59.773 33.333 14.00 4.55 40.31 3.41
1838 2065 1.142778 GCTAGTCGGCTTTCAGCGAG 61.143 60.000 0.00 0.00 43.62 5.03
1915 2146 7.483307 ACAACACAATAATTATAGCAGCCTTG 58.517 34.615 0.00 0.00 0.00 3.61
1930 2161 1.643292 CTTGTATGGCCATGTCGCG 59.357 57.895 29.04 0.00 0.00 5.87
1931 2162 2.378945 CTTGTATGGCCATGTCGCGC 62.379 60.000 29.04 11.15 0.00 6.86
2021 2274 5.506686 AAGGAAGCAGTCTTTGTTTTCTC 57.493 39.130 0.00 0.00 35.02 2.87
2025 2278 2.289002 AGCAGTCTTTGTTTTCTCGCAG 59.711 45.455 0.00 0.00 0.00 5.18
2146 2399 7.816640 TGCAAAAAGGGCTAATTCGATATATC 58.183 34.615 2.34 2.34 0.00 1.63
2189 2442 3.199677 TCAAAGTACCCAAGTGTTGACG 58.800 45.455 0.00 0.00 0.00 4.35
2211 2466 7.646130 TGACGATGGAAATGTTTTTGTAAGTTC 59.354 33.333 0.00 0.00 0.00 3.01
2213 2468 7.647715 ACGATGGAAATGTTTTTGTAAGTTCTG 59.352 33.333 0.00 0.00 0.00 3.02
2227 2482 7.744087 TGTAAGTTCTGTTTTGCAGTCATAT 57.256 32.000 0.00 0.00 45.23 1.78
2364 2619 5.628797 AAATTTGATGTCAAGGTTTGGGT 57.371 34.783 0.00 0.00 37.15 4.51
2370 2625 1.566703 TGTCAAGGTTTGGGTGGAGAA 59.433 47.619 0.00 0.00 0.00 2.87
2378 2633 0.699577 TTGGGTGGAGAAGTGGGGAA 60.700 55.000 0.00 0.00 0.00 3.97
2379 2634 1.379146 GGGTGGAGAAGTGGGGAAC 59.621 63.158 0.00 0.00 0.00 3.62
2380 2635 1.423794 GGGTGGAGAAGTGGGGAACA 61.424 60.000 0.00 0.00 0.00 3.18
2381 2636 0.476771 GGTGGAGAAGTGGGGAACAA 59.523 55.000 0.00 0.00 0.00 2.83
2382 2637 1.133606 GGTGGAGAAGTGGGGAACAAA 60.134 52.381 0.00 0.00 0.00 2.83
2383 2638 2.661718 GTGGAGAAGTGGGGAACAAAA 58.338 47.619 0.00 0.00 0.00 2.44
2384 2639 2.361119 GTGGAGAAGTGGGGAACAAAAC 59.639 50.000 0.00 0.00 0.00 2.43
2518 2781 5.011023 GTCAACCAAATCCCAAGACAAATCT 59.989 40.000 0.00 0.00 36.42 2.40
2605 2875 3.252458 ACCTAAACCAAACATGAGAACGC 59.748 43.478 0.00 0.00 0.00 4.84
2649 2919 7.875971 AGTTCACAACAATTTAGAGCCTTTAG 58.124 34.615 0.00 0.00 0.00 1.85
2665 2935 6.049790 AGCCTTTAGAGTAGGAAAAATAGCG 58.950 40.000 0.00 0.00 34.56 4.26
2678 2948 5.980715 GGAAAAATAGCGTCAAAAGTTTGGA 59.019 36.000 4.04 0.00 38.66 3.53
2714 2984 0.687354 CTGGGTGTGGCTGTACTTCT 59.313 55.000 0.00 0.00 0.00 2.85
2717 2987 1.608283 GGGTGTGGCTGTACTTCTGTC 60.608 57.143 0.00 0.00 0.00 3.51
2732 3002 8.954350 TGTACTTCTGTCTGTATAAGTTACTCC 58.046 37.037 0.00 0.00 34.23 3.85
2877 3147 3.886505 TGTTAGCCTACCCACTGTTTTTG 59.113 43.478 0.00 0.00 0.00 2.44
2917 3187 1.127951 CGATTGTTTGACCGGTGTAGC 59.872 52.381 14.63 1.46 0.00 3.58
2918 3188 2.423577 GATTGTTTGACCGGTGTAGCT 58.576 47.619 14.63 0.00 0.00 3.32
2919 3189 2.335316 TTGTTTGACCGGTGTAGCTT 57.665 45.000 14.63 0.00 0.00 3.74
3017 3287 4.652822 AGAACCTGGAACATGAAGTTACC 58.347 43.478 0.00 0.00 40.58 2.85
3375 3645 2.165030 CCAACTGGCAAGATAGCAAAGG 59.835 50.000 0.00 0.00 35.83 3.11
3460 3732 5.181245 GCTGTACTCCTTTCAATTTGTGCTA 59.819 40.000 0.00 0.00 0.00 3.49
3468 3740 7.430441 TCCTTTCAATTTGTGCTACCTTTTAC 58.570 34.615 0.00 0.00 0.00 2.01
3532 3812 3.119352 CCATTCCAAGTTTTCCTGCTAGC 60.119 47.826 8.10 8.10 0.00 3.42
3629 3909 3.970410 CCTGGTGCCCTGGCTCAA 61.970 66.667 9.97 0.00 42.51 3.02
3698 3978 4.008074 TCTGTTGAATGTGGAGAAGGAC 57.992 45.455 0.00 0.00 0.00 3.85
3712 3992 0.820871 AAGGACGATGAGCTGGAGAC 59.179 55.000 0.00 0.00 0.00 3.36
3888 4168 3.643320 TGAGTCACTTCCACTTGATCTGT 59.357 43.478 0.00 0.00 0.00 3.41
3924 4204 3.771577 ACCACTTCCTGTTAACTCCAG 57.228 47.619 7.22 0.00 0.00 3.86
4067 4347 6.500684 AGGCAGTAAGTATCATGTTTTGTG 57.499 37.500 0.00 0.00 0.00 3.33
4071 4351 6.252015 GCAGTAAGTATCATGTTTTGTGCATG 59.748 38.462 0.00 0.00 43.55 4.06
4104 4384 8.026396 AGTCCAGTTACTAAGTGTTTTTCCTA 57.974 34.615 3.45 0.00 0.00 2.94
4115 4395 5.519722 AGTGTTTTTCCTATTGCACTTTCG 58.480 37.500 0.00 0.00 34.02 3.46
4129 4409 3.125316 GCACTTTCGATACCCTTGTCAAG 59.875 47.826 5.53 5.53 0.00 3.02
4152 4432 7.416964 AGCTTAGTTCTCACTAGAATCATGT 57.583 36.000 0.00 0.00 43.50 3.21
4157 4437 7.106439 AGTTCTCACTAGAATCATGTACCAG 57.894 40.000 0.00 0.00 43.50 4.00
4231 4517 9.295825 ACATCTCTTATTTTTGTACATTGGTGA 57.704 29.630 0.00 0.00 0.00 4.02
4269 4902 4.648307 ACCTGCATAGTAACTACCTACCAC 59.352 45.833 0.00 0.00 0.00 4.16
4337 4981 4.407365 ACATCGGATTCCAAACCTTTCTT 58.593 39.130 3.09 0.00 0.00 2.52
4626 5271 7.703328 TCTAATCTGTTTGAAAACCACTGAAC 58.297 34.615 3.59 0.00 38.11 3.18
4660 5305 1.450312 CGGCAAGGATGTGAGGGTC 60.450 63.158 0.00 0.00 0.00 4.46
4684 5329 1.913262 CCCAAGAACCCCAAAGGCC 60.913 63.158 0.00 0.00 40.58 5.19
4693 5338 1.133181 CCCCAAAGGCCCCAAAACAT 61.133 55.000 0.00 0.00 0.00 2.71
4723 5368 1.334869 CCTTCACGTTTCAAGCTGCTT 59.665 47.619 9.53 9.53 0.00 3.91
5011 5656 2.470990 TGTCATGTCTCTGGGTATGCT 58.529 47.619 0.00 0.00 0.00 3.79
5058 5703 2.146342 CACCTGTGTGTCATCTTGGAC 58.854 52.381 0.00 0.00 37.72 4.02
5242 5887 4.657504 TGCTTATCAGGATTCTGGAGACAT 59.342 41.667 0.00 0.00 41.51 3.06
5270 7775 7.334749 CAAATTCGTACTTGTCCATACATACG 58.665 38.462 5.69 5.69 42.14 3.06
5302 7807 6.779117 AGAGATTGTAAAGTTTGATGATGCG 58.221 36.000 0.00 0.00 0.00 4.73
5315 7820 3.118445 TGATGATGCGGAATCTACCACAA 60.118 43.478 0.00 0.00 36.15 3.33
5325 7830 0.961857 TCTACCACAAGCCGTAGCGA 60.962 55.000 0.00 0.00 46.67 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.491372 TCGTGGTTTTAGCAAATCTACAGATAG 59.509 37.037 0.00 0.00 33.73 2.08
1 2 7.324935 TCGTGGTTTTAGCAAATCTACAGATA 58.675 34.615 0.00 0.00 33.73 1.98
3 4 5.543714 TCGTGGTTTTAGCAAATCTACAGA 58.456 37.500 0.00 0.00 0.00 3.41
4 5 5.856126 TCGTGGTTTTAGCAAATCTACAG 57.144 39.130 0.00 0.00 0.00 2.74
6 7 5.353123 TGGATCGTGGTTTTAGCAAATCTAC 59.647 40.000 0.00 0.00 0.00 2.59
7 8 5.353123 GTGGATCGTGGTTTTAGCAAATCTA 59.647 40.000 0.00 0.00 0.00 1.98
9 10 4.156008 AGTGGATCGTGGTTTTAGCAAATC 59.844 41.667 0.00 0.00 0.00 2.17
10 11 4.079253 AGTGGATCGTGGTTTTAGCAAAT 58.921 39.130 0.00 0.00 0.00 2.32
11 12 3.482436 AGTGGATCGTGGTTTTAGCAAA 58.518 40.909 0.00 0.00 0.00 3.68
12 13 3.134574 AGTGGATCGTGGTTTTAGCAA 57.865 42.857 0.00 0.00 0.00 3.91
13 14 2.851263 AGTGGATCGTGGTTTTAGCA 57.149 45.000 0.00 0.00 0.00 3.49
14 15 3.864003 GTCTAGTGGATCGTGGTTTTAGC 59.136 47.826 0.00 0.00 0.00 3.09
15 16 4.863131 GTGTCTAGTGGATCGTGGTTTTAG 59.137 45.833 0.00 0.00 0.00 1.85
16 17 4.525487 AGTGTCTAGTGGATCGTGGTTTTA 59.475 41.667 0.00 0.00 0.00 1.52
17 18 3.323979 AGTGTCTAGTGGATCGTGGTTTT 59.676 43.478 0.00 0.00 0.00 2.43
18 19 2.897969 AGTGTCTAGTGGATCGTGGTTT 59.102 45.455 0.00 0.00 0.00 3.27
19 20 2.526432 AGTGTCTAGTGGATCGTGGTT 58.474 47.619 0.00 0.00 0.00 3.67
20 21 2.217510 AGTGTCTAGTGGATCGTGGT 57.782 50.000 0.00 0.00 0.00 4.16
21 22 2.031807 CGTAGTGTCTAGTGGATCGTGG 59.968 54.545 0.00 0.00 0.00 4.94
22 23 2.031807 CCGTAGTGTCTAGTGGATCGTG 59.968 54.545 0.00 0.00 0.00 4.35
23 24 2.286872 CCGTAGTGTCTAGTGGATCGT 58.713 52.381 0.00 0.00 0.00 3.73
24 25 2.286872 ACCGTAGTGTCTAGTGGATCG 58.713 52.381 0.00 0.00 0.00 3.69
25 26 4.275443 CCTAACCGTAGTGTCTAGTGGATC 59.725 50.000 0.00 0.00 0.00 3.36
26 27 4.205587 CCTAACCGTAGTGTCTAGTGGAT 58.794 47.826 0.00 0.00 0.00 3.41
27 28 3.614092 CCTAACCGTAGTGTCTAGTGGA 58.386 50.000 0.00 0.00 0.00 4.02
28 29 2.098770 GCCTAACCGTAGTGTCTAGTGG 59.901 54.545 0.00 0.00 0.00 4.00
29 30 2.751259 TGCCTAACCGTAGTGTCTAGTG 59.249 50.000 0.00 0.00 0.00 2.74
30 31 3.015327 CTGCCTAACCGTAGTGTCTAGT 58.985 50.000 0.00 0.00 0.00 2.57
31 32 2.358267 CCTGCCTAACCGTAGTGTCTAG 59.642 54.545 0.00 0.00 0.00 2.43
32 33 2.372264 CCTGCCTAACCGTAGTGTCTA 58.628 52.381 0.00 0.00 0.00 2.59
33 34 1.183549 CCTGCCTAACCGTAGTGTCT 58.816 55.000 0.00 0.00 0.00 3.41
34 35 0.175073 CCCTGCCTAACCGTAGTGTC 59.825 60.000 0.00 0.00 0.00 3.67
35 36 0.543646 ACCCTGCCTAACCGTAGTGT 60.544 55.000 0.00 0.00 0.00 3.55
36 37 0.611714 AACCCTGCCTAACCGTAGTG 59.388 55.000 0.00 0.00 0.00 2.74
37 38 0.611714 CAACCCTGCCTAACCGTAGT 59.388 55.000 0.00 0.00 0.00 2.73
38 39 0.611714 ACAACCCTGCCTAACCGTAG 59.388 55.000 0.00 0.00 0.00 3.51
39 40 0.322322 CACAACCCTGCCTAACCGTA 59.678 55.000 0.00 0.00 0.00 4.02
40 41 1.072505 CACAACCCTGCCTAACCGT 59.927 57.895 0.00 0.00 0.00 4.83
41 42 0.673644 CTCACAACCCTGCCTAACCG 60.674 60.000 0.00 0.00 0.00 4.44
42 43 0.322546 CCTCACAACCCTGCCTAACC 60.323 60.000 0.00 0.00 0.00 2.85
43 44 0.322546 CCCTCACAACCCTGCCTAAC 60.323 60.000 0.00 0.00 0.00 2.34
44 45 0.474854 TCCCTCACAACCCTGCCTAA 60.475 55.000 0.00 0.00 0.00 2.69
45 46 0.474854 TTCCCTCACAACCCTGCCTA 60.475 55.000 0.00 0.00 0.00 3.93
46 47 1.360393 TTTCCCTCACAACCCTGCCT 61.360 55.000 0.00 0.00 0.00 4.75
47 48 0.251787 ATTTCCCTCACAACCCTGCC 60.252 55.000 0.00 0.00 0.00 4.85
48 49 1.632589 AATTTCCCTCACAACCCTGC 58.367 50.000 0.00 0.00 0.00 4.85
49 50 3.089284 GGTAATTTCCCTCACAACCCTG 58.911 50.000 0.00 0.00 0.00 4.45
50 51 2.290705 CGGTAATTTCCCTCACAACCCT 60.291 50.000 0.00 0.00 0.00 4.34
51 52 2.089201 CGGTAATTTCCCTCACAACCC 58.911 52.381 0.00 0.00 0.00 4.11
52 53 2.745821 GTCGGTAATTTCCCTCACAACC 59.254 50.000 0.00 0.00 0.00 3.77
53 54 2.414138 CGTCGGTAATTTCCCTCACAAC 59.586 50.000 0.00 0.00 0.00 3.32
54 55 2.690786 CGTCGGTAATTTCCCTCACAA 58.309 47.619 0.00 0.00 0.00 3.33
55 56 1.673626 GCGTCGGTAATTTCCCTCACA 60.674 52.381 0.00 0.00 0.00 3.58
56 57 1.004595 GCGTCGGTAATTTCCCTCAC 58.995 55.000 0.00 0.00 0.00 3.51
57 58 0.899720 AGCGTCGGTAATTTCCCTCA 59.100 50.000 0.00 0.00 0.00 3.86
58 59 1.287425 CAGCGTCGGTAATTTCCCTC 58.713 55.000 0.00 0.00 0.00 4.30
59 60 0.611714 ACAGCGTCGGTAATTTCCCT 59.388 50.000 0.00 0.00 0.00 4.20
60 61 1.004595 GACAGCGTCGGTAATTTCCC 58.995 55.000 0.00 0.00 0.00 3.97
74 75 1.003262 TTACCGTTGTACGCGACAGC 61.003 55.000 15.93 13.87 40.91 4.40
75 76 1.407434 TTTACCGTTGTACGCGACAG 58.593 50.000 15.93 4.11 40.91 3.51
76 77 1.786004 CTTTTACCGTTGTACGCGACA 59.214 47.619 15.93 10.48 40.91 4.35
77 78 1.124839 CCTTTTACCGTTGTACGCGAC 59.875 52.381 15.93 7.50 40.91 5.19
78 79 1.417372 CCTTTTACCGTTGTACGCGA 58.583 50.000 15.93 0.00 40.91 5.87
79 80 0.179243 GCCTTTTACCGTTGTACGCG 60.179 55.000 3.53 3.53 40.91 6.01
80 81 1.136169 CAGCCTTTTACCGTTGTACGC 60.136 52.381 0.00 0.00 40.91 4.42
81 82 2.137523 ACAGCCTTTTACCGTTGTACG 58.862 47.619 0.00 0.00 42.11 3.67
82 83 2.156310 CGACAGCCTTTTACCGTTGTAC 59.844 50.000 0.00 0.00 0.00 2.90
83 84 2.406130 CGACAGCCTTTTACCGTTGTA 58.594 47.619 0.00 0.00 0.00 2.41
84 85 1.223187 CGACAGCCTTTTACCGTTGT 58.777 50.000 0.00 0.00 0.00 3.32
85 86 0.110373 GCGACAGCCTTTTACCGTTG 60.110 55.000 0.00 0.00 37.42 4.10
86 87 0.250166 AGCGACAGCCTTTTACCGTT 60.250 50.000 0.00 0.00 46.67 4.44
87 88 0.604578 TAGCGACAGCCTTTTACCGT 59.395 50.000 0.00 0.00 46.67 4.83
88 89 1.659098 CTTAGCGACAGCCTTTTACCG 59.341 52.381 0.00 0.00 46.67 4.02
89 90 2.968675 TCTTAGCGACAGCCTTTTACC 58.031 47.619 0.00 0.00 46.67 2.85
90 91 3.181519 GCTTCTTAGCGACAGCCTTTTAC 60.182 47.826 0.00 0.00 46.67 2.01
91 92 3.000727 GCTTCTTAGCGACAGCCTTTTA 58.999 45.455 0.00 0.00 46.67 1.52
92 93 1.807142 GCTTCTTAGCGACAGCCTTTT 59.193 47.619 0.00 0.00 46.67 2.27
93 94 1.443802 GCTTCTTAGCGACAGCCTTT 58.556 50.000 0.00 0.00 46.67 3.11
94 95 3.145228 GCTTCTTAGCGACAGCCTT 57.855 52.632 0.00 0.00 46.67 4.35
95 96 4.921834 GCTTCTTAGCGACAGCCT 57.078 55.556 0.00 0.00 46.67 4.58
116 117 2.158871 ACACGGTCTGTAGCCTCAAAAA 60.159 45.455 0.00 0.00 0.00 1.94
117 118 1.414919 ACACGGTCTGTAGCCTCAAAA 59.585 47.619 0.00 0.00 0.00 2.44
118 119 1.045407 ACACGGTCTGTAGCCTCAAA 58.955 50.000 0.00 0.00 0.00 2.69
119 120 0.317160 CACACGGTCTGTAGCCTCAA 59.683 55.000 0.00 0.00 0.00 3.02
120 121 0.826256 ACACACGGTCTGTAGCCTCA 60.826 55.000 0.00 0.00 0.00 3.86
121 122 0.109226 GACACACGGTCTGTAGCCTC 60.109 60.000 0.00 0.00 43.46 4.70
122 123 1.965219 GACACACGGTCTGTAGCCT 59.035 57.895 0.00 0.00 43.46 4.58
123 124 4.573162 GACACACGGTCTGTAGCC 57.427 61.111 0.00 0.00 43.46 3.93
137 138 7.918076 AGAAGAAGGGTGTCTATAATTTGACA 58.082 34.615 5.04 5.04 40.39 3.58
138 139 8.261522 AGAGAAGAAGGGTGTCTATAATTTGAC 58.738 37.037 0.00 0.00 0.00 3.18
139 140 8.380742 AGAGAAGAAGGGTGTCTATAATTTGA 57.619 34.615 0.00 0.00 0.00 2.69
140 141 8.482128 AGAGAGAAGAAGGGTGTCTATAATTTG 58.518 37.037 0.00 0.00 0.00 2.32
141 142 8.616799 AGAGAGAAGAAGGGTGTCTATAATTT 57.383 34.615 0.00 0.00 0.00 1.82
142 143 7.841729 TGAGAGAGAAGAAGGGTGTCTATAATT 59.158 37.037 0.00 0.00 0.00 1.40
143 144 7.358263 TGAGAGAGAAGAAGGGTGTCTATAAT 58.642 38.462 0.00 0.00 0.00 1.28
144 145 6.732487 TGAGAGAGAAGAAGGGTGTCTATAA 58.268 40.000 0.00 0.00 0.00 0.98
145 146 6.328782 TGAGAGAGAAGAAGGGTGTCTATA 57.671 41.667 0.00 0.00 0.00 1.31
146 147 5.199982 TGAGAGAGAAGAAGGGTGTCTAT 57.800 43.478 0.00 0.00 0.00 1.98
147 148 4.659529 TGAGAGAGAAGAAGGGTGTCTA 57.340 45.455 0.00 0.00 0.00 2.59
148 149 3.534357 TGAGAGAGAAGAAGGGTGTCT 57.466 47.619 0.00 0.00 0.00 3.41
149 150 3.766591 TGATGAGAGAGAAGAAGGGTGTC 59.233 47.826 0.00 0.00 0.00 3.67
150 151 3.784178 TGATGAGAGAGAAGAAGGGTGT 58.216 45.455 0.00 0.00 0.00 4.16
151 152 4.815533 TTGATGAGAGAGAAGAAGGGTG 57.184 45.455 0.00 0.00 0.00 4.61
152 153 5.279685 AGATTGATGAGAGAGAAGAAGGGT 58.720 41.667 0.00 0.00 0.00 4.34
153 154 5.599656 AGAGATTGATGAGAGAGAAGAAGGG 59.400 44.000 0.00 0.00 0.00 3.95
154 155 6.548622 AGAGAGATTGATGAGAGAGAAGAAGG 59.451 42.308 0.00 0.00 0.00 3.46
155 156 7.578310 AGAGAGATTGATGAGAGAGAAGAAG 57.422 40.000 0.00 0.00 0.00 2.85
156 157 7.835682 AGAAGAGAGATTGATGAGAGAGAAGAA 59.164 37.037 0.00 0.00 0.00 2.52
157 158 7.348815 AGAAGAGAGATTGATGAGAGAGAAGA 58.651 38.462 0.00 0.00 0.00 2.87
158 159 7.255381 GGAGAAGAGAGATTGATGAGAGAGAAG 60.255 44.444 0.00 0.00 0.00 2.85
159 160 6.547141 GGAGAAGAGAGATTGATGAGAGAGAA 59.453 42.308 0.00 0.00 0.00 2.87
160 161 6.064060 GGAGAAGAGAGATTGATGAGAGAGA 58.936 44.000 0.00 0.00 0.00 3.10
161 162 5.829391 TGGAGAAGAGAGATTGATGAGAGAG 59.171 44.000 0.00 0.00 0.00 3.20
162 163 5.593909 GTGGAGAAGAGAGATTGATGAGAGA 59.406 44.000 0.00 0.00 0.00 3.10
163 164 5.221303 GGTGGAGAAGAGAGATTGATGAGAG 60.221 48.000 0.00 0.00 0.00 3.20
164 165 4.648762 GGTGGAGAAGAGAGATTGATGAGA 59.351 45.833 0.00 0.00 0.00 3.27
165 166 4.650588 AGGTGGAGAAGAGAGATTGATGAG 59.349 45.833 0.00 0.00 0.00 2.90
166 167 4.618635 AGGTGGAGAAGAGAGATTGATGA 58.381 43.478 0.00 0.00 0.00 2.92
167 168 5.832595 TCTAGGTGGAGAAGAGAGATTGATG 59.167 44.000 0.00 0.00 0.00 3.07
168 169 6.024563 TCTAGGTGGAGAAGAGAGATTGAT 57.975 41.667 0.00 0.00 0.00 2.57
169 170 5.458451 TCTAGGTGGAGAAGAGAGATTGA 57.542 43.478 0.00 0.00 0.00 2.57
170 171 7.831691 TTATCTAGGTGGAGAAGAGAGATTG 57.168 40.000 0.00 0.00 0.00 2.67
171 172 9.445973 AATTTATCTAGGTGGAGAAGAGAGATT 57.554 33.333 0.00 0.00 0.00 2.40
172 173 9.445973 AAATTTATCTAGGTGGAGAAGAGAGAT 57.554 33.333 0.00 0.00 0.00 2.75
173 174 8.846423 AAATTTATCTAGGTGGAGAAGAGAGA 57.154 34.615 0.00 0.00 0.00 3.10
174 175 7.865385 CGAAATTTATCTAGGTGGAGAAGAGAG 59.135 40.741 0.00 0.00 0.00 3.20
175 176 7.342284 ACGAAATTTATCTAGGTGGAGAAGAGA 59.658 37.037 0.00 0.00 0.00 3.10
176 177 7.493367 ACGAAATTTATCTAGGTGGAGAAGAG 58.507 38.462 0.00 0.00 0.00 2.85
177 178 7.419711 ACGAAATTTATCTAGGTGGAGAAGA 57.580 36.000 0.00 0.00 0.00 2.87
178 179 7.378995 CGTACGAAATTTATCTAGGTGGAGAAG 59.621 40.741 10.44 0.00 0.00 2.85
179 180 7.148018 ACGTACGAAATTTATCTAGGTGGAGAA 60.148 37.037 24.41 0.00 0.00 2.87
180 181 6.319658 ACGTACGAAATTTATCTAGGTGGAGA 59.680 38.462 24.41 0.00 0.00 3.71
181 182 6.417044 CACGTACGAAATTTATCTAGGTGGAG 59.583 42.308 24.41 0.00 0.00 3.86
182 183 6.267817 CACGTACGAAATTTATCTAGGTGGA 58.732 40.000 24.41 0.00 0.00 4.02
183 184 5.461078 CCACGTACGAAATTTATCTAGGTGG 59.539 44.000 24.41 17.84 35.39 4.61
184 185 6.038356 ACCACGTACGAAATTTATCTAGGTG 58.962 40.000 24.41 3.97 0.00 4.00
185 186 6.212888 ACCACGTACGAAATTTATCTAGGT 57.787 37.500 24.41 8.47 0.00 3.08
186 187 8.534778 GTTTACCACGTACGAAATTTATCTAGG 58.465 37.037 24.41 7.89 0.00 3.02
187 188 8.534778 GGTTTACCACGTACGAAATTTATCTAG 58.465 37.037 24.41 0.00 35.64 2.43
188 189 8.250332 AGGTTTACCACGTACGAAATTTATCTA 58.750 33.333 24.41 0.00 38.89 1.98
189 190 7.099120 AGGTTTACCACGTACGAAATTTATCT 58.901 34.615 24.41 8.01 38.89 1.98
190 191 7.294676 AGGTTTACCACGTACGAAATTTATC 57.705 36.000 24.41 5.80 38.89 1.75
191 192 7.671495 AAGGTTTACCACGTACGAAATTTAT 57.329 32.000 24.41 0.00 38.89 1.40
192 193 8.770438 ATAAGGTTTACCACGTACGAAATTTA 57.230 30.769 24.41 13.64 38.89 1.40
193 194 7.671495 ATAAGGTTTACCACGTACGAAATTT 57.329 32.000 24.41 12.13 38.89 1.82
194 195 8.250332 TCTATAAGGTTTACCACGTACGAAATT 58.750 33.333 24.41 6.74 38.89 1.82
195 196 7.702348 GTCTATAAGGTTTACCACGTACGAAAT 59.298 37.037 24.41 8.67 38.89 2.17
196 197 7.027161 GTCTATAAGGTTTACCACGTACGAAA 58.973 38.462 24.41 9.08 38.89 3.46
197 198 6.150307 TGTCTATAAGGTTTACCACGTACGAA 59.850 38.462 24.41 2.09 38.89 3.85
198 199 5.645929 TGTCTATAAGGTTTACCACGTACGA 59.354 40.000 24.41 0.00 38.89 3.43
199 200 5.879237 TGTCTATAAGGTTTACCACGTACG 58.121 41.667 15.01 15.01 38.89 3.67
200 201 7.274250 CAGTTGTCTATAAGGTTTACCACGTAC 59.726 40.741 1.13 0.00 38.89 3.67
201 202 7.176515 TCAGTTGTCTATAAGGTTTACCACGTA 59.823 37.037 1.13 0.00 38.89 3.57
202 203 6.015180 TCAGTTGTCTATAAGGTTTACCACGT 60.015 38.462 1.13 0.00 38.89 4.49
203 204 6.392354 TCAGTTGTCTATAAGGTTTACCACG 58.608 40.000 1.13 0.00 38.89 4.94
204 205 7.384477 ACTCAGTTGTCTATAAGGTTTACCAC 58.616 38.462 1.13 0.00 38.89 4.16
205 206 7.549147 ACTCAGTTGTCTATAAGGTTTACCA 57.451 36.000 1.13 0.00 38.89 3.25
206 207 8.196103 CCTACTCAGTTGTCTATAAGGTTTACC 58.804 40.741 0.00 0.00 0.00 2.85
207 208 7.705752 GCCTACTCAGTTGTCTATAAGGTTTAC 59.294 40.741 0.00 0.00 0.00 2.01
208 209 7.398047 TGCCTACTCAGTTGTCTATAAGGTTTA 59.602 37.037 0.00 0.00 0.00 2.01
209 210 6.212791 TGCCTACTCAGTTGTCTATAAGGTTT 59.787 38.462 0.00 0.00 0.00 3.27
210 211 5.720041 TGCCTACTCAGTTGTCTATAAGGTT 59.280 40.000 0.00 0.00 0.00 3.50
211 212 5.127356 GTGCCTACTCAGTTGTCTATAAGGT 59.873 44.000 0.00 0.00 0.00 3.50
212 213 5.452077 GGTGCCTACTCAGTTGTCTATAAGG 60.452 48.000 0.00 0.00 0.00 2.69
213 214 5.593010 GGTGCCTACTCAGTTGTCTATAAG 58.407 45.833 0.00 0.00 0.00 1.73
214 215 4.097437 CGGTGCCTACTCAGTTGTCTATAA 59.903 45.833 0.00 0.00 0.00 0.98
215 216 3.630769 CGGTGCCTACTCAGTTGTCTATA 59.369 47.826 0.00 0.00 0.00 1.31
216 217 2.427453 CGGTGCCTACTCAGTTGTCTAT 59.573 50.000 0.00 0.00 0.00 1.98
217 218 1.816835 CGGTGCCTACTCAGTTGTCTA 59.183 52.381 0.00 0.00 0.00 2.59
218 219 0.603569 CGGTGCCTACTCAGTTGTCT 59.396 55.000 0.00 0.00 0.00 3.41
219 220 0.317479 ACGGTGCCTACTCAGTTGTC 59.683 55.000 0.00 0.00 0.00 3.18
220 221 0.756903 AACGGTGCCTACTCAGTTGT 59.243 50.000 0.00 0.00 0.00 3.32
221 222 1.148310 CAACGGTGCCTACTCAGTTG 58.852 55.000 0.00 0.00 33.87 3.16
222 223 0.756903 ACAACGGTGCCTACTCAGTT 59.243 50.000 0.00 0.00 0.00 3.16
223 224 1.271656 GTACAACGGTGCCTACTCAGT 59.728 52.381 0.00 0.00 0.00 3.41
224 225 1.271379 TGTACAACGGTGCCTACTCAG 59.729 52.381 0.00 0.00 0.00 3.35
225 226 1.330234 TGTACAACGGTGCCTACTCA 58.670 50.000 0.00 0.00 0.00 3.41
226 227 2.268298 CATGTACAACGGTGCCTACTC 58.732 52.381 0.00 0.00 0.00 2.59
227 228 1.674817 GCATGTACAACGGTGCCTACT 60.675 52.381 0.00 0.00 0.00 2.57
228 229 0.725117 GCATGTACAACGGTGCCTAC 59.275 55.000 0.00 0.00 0.00 3.18
229 230 0.391927 GGCATGTACAACGGTGCCTA 60.392 55.000 24.62 0.00 44.23 3.93
230 231 1.674322 GGCATGTACAACGGTGCCT 60.674 57.895 24.62 0.00 44.23 4.75
231 232 2.696759 GGGCATGTACAACGGTGCC 61.697 63.158 24.11 24.11 45.78 5.01
232 233 1.644786 GAGGGCATGTACAACGGTGC 61.645 60.000 10.12 10.12 33.41 5.01
233 234 1.358725 CGAGGGCATGTACAACGGTG 61.359 60.000 0.00 0.00 0.00 4.94
234 235 1.079405 CGAGGGCATGTACAACGGT 60.079 57.895 0.00 0.00 0.00 4.83
235 236 0.173935 TACGAGGGCATGTACAACGG 59.826 55.000 0.00 0.00 0.00 4.44
236 237 1.999048 TTACGAGGGCATGTACAACG 58.001 50.000 0.00 2.34 0.00 4.10
237 238 3.124636 CAGTTTACGAGGGCATGTACAAC 59.875 47.826 0.00 0.00 0.00 3.32
238 239 3.331150 CAGTTTACGAGGGCATGTACAA 58.669 45.455 0.00 0.00 0.00 2.41
239 240 2.354303 CCAGTTTACGAGGGCATGTACA 60.354 50.000 0.00 0.00 0.00 2.90
240 241 2.093869 TCCAGTTTACGAGGGCATGTAC 60.094 50.000 0.00 0.00 0.00 2.90
241 242 2.093869 GTCCAGTTTACGAGGGCATGTA 60.094 50.000 0.00 0.00 0.00 2.29
242 243 0.981183 TCCAGTTTACGAGGGCATGT 59.019 50.000 0.00 0.00 0.00 3.21
243 244 1.369625 GTCCAGTTTACGAGGGCATG 58.630 55.000 0.00 0.00 0.00 4.06
244 245 0.252197 GGTCCAGTTTACGAGGGCAT 59.748 55.000 0.00 0.00 0.00 4.40
245 246 1.122632 TGGTCCAGTTTACGAGGGCA 61.123 55.000 0.00 0.00 0.00 5.36
246 247 0.035739 TTGGTCCAGTTTACGAGGGC 59.964 55.000 0.00 0.00 0.00 5.19
247 248 1.609841 GGTTGGTCCAGTTTACGAGGG 60.610 57.143 0.00 0.00 35.97 4.30
248 249 1.346722 AGGTTGGTCCAGTTTACGAGG 59.653 52.381 0.00 0.00 39.02 4.63
249 250 2.299297 AGAGGTTGGTCCAGTTTACGAG 59.701 50.000 0.00 0.00 39.02 4.18
250 251 2.298163 GAGAGGTTGGTCCAGTTTACGA 59.702 50.000 0.00 0.00 39.02 3.43
251 252 2.299297 AGAGAGGTTGGTCCAGTTTACG 59.701 50.000 0.00 0.00 39.02 3.18
252 253 5.422650 AGATAGAGAGGTTGGTCCAGTTTAC 59.577 44.000 0.00 0.00 39.02 2.01
253 254 5.590818 AGATAGAGAGGTTGGTCCAGTTTA 58.409 41.667 0.00 0.00 39.02 2.01
254 255 4.430441 AGATAGAGAGGTTGGTCCAGTTT 58.570 43.478 0.00 0.00 39.02 2.66
255 256 4.067944 AGATAGAGAGGTTGGTCCAGTT 57.932 45.455 0.00 0.00 39.02 3.16
256 257 3.767309 AGATAGAGAGGTTGGTCCAGT 57.233 47.619 0.00 0.00 39.02 4.00
257 258 5.835819 TGAATAGATAGAGAGGTTGGTCCAG 59.164 44.000 0.00 0.00 39.02 3.86
258 259 5.777449 TGAATAGATAGAGAGGTTGGTCCA 58.223 41.667 0.00 0.00 39.02 4.02
259 260 6.732896 TTGAATAGATAGAGAGGTTGGTCC 57.267 41.667 0.00 0.00 0.00 4.46
260 261 7.957002 TCATTGAATAGATAGAGAGGTTGGTC 58.043 38.462 0.00 0.00 0.00 4.02
261 262 7.921041 TCATTGAATAGATAGAGAGGTTGGT 57.079 36.000 0.00 0.00 0.00 3.67
262 263 9.790344 AATTCATTGAATAGATAGAGAGGTTGG 57.210 33.333 12.15 0.00 31.46 3.77
268 269 9.645059 CCGCTAAATTCATTGAATAGATAGAGA 57.355 33.333 20.17 2.51 31.46 3.10
269 270 9.429359 ACCGCTAAATTCATTGAATAGATAGAG 57.571 33.333 20.17 17.85 31.46 2.43
270 271 9.778741 AACCGCTAAATTCATTGAATAGATAGA 57.221 29.630 20.17 4.19 31.46 1.98
272 273 9.778741 AGAACCGCTAAATTCATTGAATAGATA 57.221 29.630 12.15 5.98 31.46 1.98
273 274 8.682936 AGAACCGCTAAATTCATTGAATAGAT 57.317 30.769 12.15 5.20 31.46 1.98
274 275 7.226720 GGAGAACCGCTAAATTCATTGAATAGA 59.773 37.037 12.15 3.19 31.46 1.98
275 276 7.012327 TGGAGAACCGCTAAATTCATTGAATAG 59.988 37.037 12.15 8.28 39.42 1.73
276 277 6.826231 TGGAGAACCGCTAAATTCATTGAATA 59.174 34.615 12.15 0.00 39.42 1.75
277 278 5.652014 TGGAGAACCGCTAAATTCATTGAAT 59.348 36.000 6.06 6.06 39.42 2.57
278 279 5.007034 TGGAGAACCGCTAAATTCATTGAA 58.993 37.500 0.75 0.75 39.42 2.69
279 280 4.584874 TGGAGAACCGCTAAATTCATTGA 58.415 39.130 0.00 0.00 39.42 2.57
280 281 4.731773 GCTGGAGAACCGCTAAATTCATTG 60.732 45.833 0.00 0.00 39.42 2.82
281 282 3.378427 GCTGGAGAACCGCTAAATTCATT 59.622 43.478 0.00 0.00 39.42 2.57
282 283 2.945668 GCTGGAGAACCGCTAAATTCAT 59.054 45.455 0.00 0.00 39.42 2.57
283 284 2.027192 AGCTGGAGAACCGCTAAATTCA 60.027 45.455 0.00 0.00 41.44 2.57
284 285 2.633488 AGCTGGAGAACCGCTAAATTC 58.367 47.619 0.00 0.00 41.44 2.17
285 286 2.789409 AGCTGGAGAACCGCTAAATT 57.211 45.000 0.00 0.00 41.44 1.82
286 287 3.432326 CCTTAGCTGGAGAACCGCTAAAT 60.432 47.826 17.99 0.68 46.28 1.40
287 288 2.093658 CCTTAGCTGGAGAACCGCTAAA 60.094 50.000 17.99 8.95 46.28 1.85
288 289 1.480954 CCTTAGCTGGAGAACCGCTAA 59.519 52.381 17.13 17.13 45.67 3.09
289 290 1.112113 CCTTAGCTGGAGAACCGCTA 58.888 55.000 0.00 0.00 42.47 4.26
290 291 1.901085 CCTTAGCTGGAGAACCGCT 59.099 57.895 0.00 0.00 43.83 5.52
291 292 1.815840 GCCTTAGCTGGAGAACCGC 60.816 63.158 0.00 0.00 39.42 5.68
292 293 4.522971 GCCTTAGCTGGAGAACCG 57.477 61.111 0.00 0.00 39.42 4.44
302 303 1.202698 CCCACTATGACCAGCCTTAGC 60.203 57.143 0.00 0.00 40.32 3.09
303 304 1.417890 CCCCACTATGACCAGCCTTAG 59.582 57.143 0.00 0.00 0.00 2.18
304 305 1.274184 ACCCCACTATGACCAGCCTTA 60.274 52.381 0.00 0.00 0.00 2.69
305 306 0.550147 ACCCCACTATGACCAGCCTT 60.550 55.000 0.00 0.00 0.00 4.35
306 307 0.341961 TACCCCACTATGACCAGCCT 59.658 55.000 0.00 0.00 0.00 4.58
307 308 1.072331 CATACCCCACTATGACCAGCC 59.928 57.143 0.00 0.00 0.00 4.85
308 309 2.047061 TCATACCCCACTATGACCAGC 58.953 52.381 0.00 0.00 29.71 4.85
309 310 3.038280 TGTCATACCCCACTATGACCAG 58.962 50.000 14.01 0.00 46.93 4.00
310 311 2.769663 GTGTCATACCCCACTATGACCA 59.230 50.000 14.01 3.45 46.93 4.02
311 312 3.039011 AGTGTCATACCCCACTATGACC 58.961 50.000 14.01 7.74 46.93 4.02
313 314 5.103643 AGACTAGTGTCATACCCCACTATGA 60.104 44.000 0.00 0.00 45.20 2.15
314 315 5.141182 AGACTAGTGTCATACCCCACTATG 58.859 45.833 0.00 0.00 45.20 2.23
315 316 5.405063 AGACTAGTGTCATACCCCACTAT 57.595 43.478 0.00 0.00 45.20 2.12
316 317 4.875578 AGACTAGTGTCATACCCCACTA 57.124 45.455 0.00 0.00 45.20 2.74
317 318 3.759815 AGACTAGTGTCATACCCCACT 57.240 47.619 0.00 0.00 45.20 4.00
318 319 6.481434 AATTAGACTAGTGTCATACCCCAC 57.519 41.667 0.00 0.00 45.20 4.61
319 320 7.842743 AGTAAATTAGACTAGTGTCATACCCCA 59.157 37.037 0.00 0.00 45.20 4.96
320 321 8.247666 AGTAAATTAGACTAGTGTCATACCCC 57.752 38.462 0.00 0.00 45.20 4.95
341 342 9.642327 TGTTACTTCGCATTATGAAAGTAGTAA 57.358 29.630 15.22 12.11 0.00 2.24
342 343 9.811995 ATGTTACTTCGCATTATGAAAGTAGTA 57.188 29.630 15.22 11.24 0.00 1.82
343 344 8.604035 CATGTTACTTCGCATTATGAAAGTAGT 58.396 33.333 15.22 9.09 0.00 2.73
344 345 8.817100 TCATGTTACTTCGCATTATGAAAGTAG 58.183 33.333 15.22 8.42 0.00 2.57
345 346 8.710835 TCATGTTACTTCGCATTATGAAAGTA 57.289 30.769 13.12 13.12 0.00 2.24
346 347 7.609760 TCATGTTACTTCGCATTATGAAAGT 57.390 32.000 14.60 14.60 0.00 2.66
347 348 9.803130 CTATCATGTTACTTCGCATTATGAAAG 57.197 33.333 0.00 1.48 0.00 2.62
348 349 9.325198 ACTATCATGTTACTTCGCATTATGAAA 57.675 29.630 0.00 0.00 0.00 2.69
349 350 8.887036 ACTATCATGTTACTTCGCATTATGAA 57.113 30.769 0.00 0.00 0.00 2.57
350 351 9.626045 CTACTATCATGTTACTTCGCATTATGA 57.374 33.333 0.00 0.00 0.00 2.15
351 352 9.411801 ACTACTATCATGTTACTTCGCATTATG 57.588 33.333 0.00 0.00 0.00 1.90
352 353 9.411801 CACTACTATCATGTTACTTCGCATTAT 57.588 33.333 0.00 0.00 0.00 1.28
353 354 8.410912 ACACTACTATCATGTTACTTCGCATTA 58.589 33.333 0.00 0.00 0.00 1.90
354 355 7.265673 ACACTACTATCATGTTACTTCGCATT 58.734 34.615 0.00 0.00 0.00 3.56
355 356 6.806751 ACACTACTATCATGTTACTTCGCAT 58.193 36.000 0.00 0.00 0.00 4.73
356 357 6.127842 TGACACTACTATCATGTTACTTCGCA 60.128 38.462 0.00 0.00 0.00 5.10
357 358 6.263344 TGACACTACTATCATGTTACTTCGC 58.737 40.000 0.00 0.00 0.00 4.70
358 359 9.600646 CTATGACACTACTATCATGTTACTTCG 57.399 37.037 0.00 0.00 36.26 3.79
362 363 9.847706 CCATCTATGACACTACTATCATGTTAC 57.152 37.037 0.00 0.00 36.26 2.50
363 364 8.523658 GCCATCTATGACACTACTATCATGTTA 58.476 37.037 0.00 0.00 36.26 2.41
364 365 7.234371 AGCCATCTATGACACTACTATCATGTT 59.766 37.037 0.00 0.00 36.26 2.71
365 366 6.723515 AGCCATCTATGACACTACTATCATGT 59.276 38.462 0.00 0.00 36.26 3.21
366 367 7.167924 AGCCATCTATGACACTACTATCATG 57.832 40.000 0.00 0.00 36.26 3.07
367 368 7.452813 TGAAGCCATCTATGACACTACTATCAT 59.547 37.037 0.00 0.00 38.99 2.45
368 369 6.777580 TGAAGCCATCTATGACACTACTATCA 59.222 38.462 0.00 0.00 0.00 2.15
369 370 7.220741 TGAAGCCATCTATGACACTACTATC 57.779 40.000 0.00 0.00 0.00 2.08
370 371 7.789202 ATGAAGCCATCTATGACACTACTAT 57.211 36.000 0.00 0.00 0.00 2.12
371 372 7.603180 AATGAAGCCATCTATGACACTACTA 57.397 36.000 0.00 0.00 31.40 1.82
372 373 6.491714 AATGAAGCCATCTATGACACTACT 57.508 37.500 0.00 0.00 31.40 2.57
373 374 8.839310 ATAAATGAAGCCATCTATGACACTAC 57.161 34.615 0.00 0.00 31.40 2.73
375 376 9.499479 CTAATAAATGAAGCCATCTATGACACT 57.501 33.333 0.00 0.00 31.40 3.55
376 377 8.233190 GCTAATAAATGAAGCCATCTATGACAC 58.767 37.037 0.00 0.00 31.40 3.67
377 378 8.159447 AGCTAATAAATGAAGCCATCTATGACA 58.841 33.333 0.00 0.00 36.92 3.58
378 379 8.558973 AGCTAATAAATGAAGCCATCTATGAC 57.441 34.615 0.00 0.00 36.92 3.06
379 380 9.006839 CAAGCTAATAAATGAAGCCATCTATGA 57.993 33.333 0.00 0.00 36.92 2.15
380 381 8.790718 ACAAGCTAATAAATGAAGCCATCTATG 58.209 33.333 0.00 0.00 36.92 2.23
381 382 8.930846 ACAAGCTAATAAATGAAGCCATCTAT 57.069 30.769 0.00 0.00 36.92 1.98
382 383 9.494271 CTACAAGCTAATAAATGAAGCCATCTA 57.506 33.333 0.00 0.00 36.92 1.98
383 384 8.213679 TCTACAAGCTAATAAATGAAGCCATCT 58.786 33.333 0.00 0.00 36.92 2.90
384 385 8.286097 GTCTACAAGCTAATAAATGAAGCCATC 58.714 37.037 0.00 0.00 36.92 3.51
385 386 7.995488 AGTCTACAAGCTAATAAATGAAGCCAT 59.005 33.333 0.00 0.00 36.92 4.40
386 387 7.338710 AGTCTACAAGCTAATAAATGAAGCCA 58.661 34.615 0.00 0.00 36.92 4.75
387 388 7.495934 TGAGTCTACAAGCTAATAAATGAAGCC 59.504 37.037 0.00 0.00 36.92 4.35
388 389 8.425577 TGAGTCTACAAGCTAATAAATGAAGC 57.574 34.615 0.00 0.00 36.48 3.86
394 395 9.587772 GACAAGATGAGTCTACAAGCTAATAAA 57.412 33.333 0.00 0.00 33.30 1.40
395 396 8.972127 AGACAAGATGAGTCTACAAGCTAATAA 58.028 33.333 0.00 0.00 44.10 1.40
396 397 8.526667 AGACAAGATGAGTCTACAAGCTAATA 57.473 34.615 0.00 0.00 44.10 0.98
397 398 7.416964 AGACAAGATGAGTCTACAAGCTAAT 57.583 36.000 0.00 0.00 44.10 1.73
398 399 6.842437 AGACAAGATGAGTCTACAAGCTAA 57.158 37.500 0.00 0.00 44.10 3.09
399 400 6.434340 TCAAGACAAGATGAGTCTACAAGCTA 59.566 38.462 0.00 0.00 45.11 3.32
400 401 5.244851 TCAAGACAAGATGAGTCTACAAGCT 59.755 40.000 0.00 0.00 45.11 3.74
401 402 5.473931 TCAAGACAAGATGAGTCTACAAGC 58.526 41.667 0.00 0.00 45.11 4.01
402 403 6.918626 TCTCAAGACAAGATGAGTCTACAAG 58.081 40.000 0.00 0.00 45.11 3.16
403 404 6.901081 TCTCAAGACAAGATGAGTCTACAA 57.099 37.500 0.00 0.00 45.11 2.41
404 405 6.571344 GCTTCTCAAGACAAGATGAGTCTACA 60.571 42.308 0.00 0.00 45.11 2.74
405 406 5.804979 GCTTCTCAAGACAAGATGAGTCTAC 59.195 44.000 0.00 0.00 45.11 2.59
406 407 5.392487 CGCTTCTCAAGACAAGATGAGTCTA 60.392 44.000 0.00 0.00 45.11 2.59
408 409 3.611986 CGCTTCTCAAGACAAGATGAGTC 59.388 47.826 3.03 0.00 42.86 3.36
409 410 3.583806 CGCTTCTCAAGACAAGATGAGT 58.416 45.455 3.03 0.00 42.86 3.41
410 411 2.348059 GCGCTTCTCAAGACAAGATGAG 59.652 50.000 0.00 0.00 43.51 2.90
411 412 2.028658 AGCGCTTCTCAAGACAAGATGA 60.029 45.455 2.64 0.00 0.00 2.92
412 413 2.344950 AGCGCTTCTCAAGACAAGATG 58.655 47.619 2.64 0.00 0.00 2.90
413 414 2.758736 AGCGCTTCTCAAGACAAGAT 57.241 45.000 2.64 0.00 0.00 2.40
414 415 3.056536 ACATAGCGCTTCTCAAGACAAGA 60.057 43.478 18.68 0.00 0.00 3.02
415 416 3.257393 ACATAGCGCTTCTCAAGACAAG 58.743 45.455 18.68 0.00 0.00 3.16
416 417 3.319137 ACATAGCGCTTCTCAAGACAA 57.681 42.857 18.68 0.00 0.00 3.18
417 418 3.319137 AACATAGCGCTTCTCAAGACA 57.681 42.857 18.68 0.00 0.00 3.41
418 419 4.174009 TGTAACATAGCGCTTCTCAAGAC 58.826 43.478 18.68 6.42 0.00 3.01
419 420 4.082190 ACTGTAACATAGCGCTTCTCAAGA 60.082 41.667 18.68 0.00 0.00 3.02
420 421 4.177026 ACTGTAACATAGCGCTTCTCAAG 58.823 43.478 18.68 7.94 0.00 3.02
421 422 4.188247 ACTGTAACATAGCGCTTCTCAA 57.812 40.909 18.68 0.00 0.00 3.02
422 423 3.868757 ACTGTAACATAGCGCTTCTCA 57.131 42.857 18.68 0.00 0.00 3.27
423 424 5.100259 TGTTACTGTAACATAGCGCTTCTC 58.900 41.667 25.14 1.35 43.23 2.87
424 425 5.068234 TGTTACTGTAACATAGCGCTTCT 57.932 39.130 25.14 0.00 43.23 2.85
454 455 9.976776 TGGTAAATATTTAATGTGAGGTGGTAA 57.023 29.630 9.48 0.00 0.00 2.85
455 456 9.398538 GTGGTAAATATTTAATGTGAGGTGGTA 57.601 33.333 9.48 0.00 0.00 3.25
456 457 7.891183 TGTGGTAAATATTTAATGTGAGGTGGT 59.109 33.333 9.48 0.00 0.00 4.16
457 458 8.287439 TGTGGTAAATATTTAATGTGAGGTGG 57.713 34.615 9.48 0.00 0.00 4.61
494 495 9.116067 AGTAAGTAACATAGTGCACTTCAAAAA 57.884 29.630 27.06 5.84 33.47 1.94
495 496 8.671384 AGTAAGTAACATAGTGCACTTCAAAA 57.329 30.769 27.06 6.71 33.47 2.44
496 497 7.386848 GGAGTAAGTAACATAGTGCACTTCAAA 59.613 37.037 27.06 7.17 33.47 2.69
497 498 6.872020 GGAGTAAGTAACATAGTGCACTTCAA 59.128 38.462 27.06 7.61 33.47 2.69
498 499 6.395629 GGAGTAAGTAACATAGTGCACTTCA 58.604 40.000 27.06 8.50 33.47 3.02
499 500 5.811100 GGGAGTAAGTAACATAGTGCACTTC 59.189 44.000 27.06 11.35 33.47 3.01
500 501 5.247564 TGGGAGTAAGTAACATAGTGCACTT 59.752 40.000 27.06 9.59 35.50 3.16
501 502 4.775780 TGGGAGTAAGTAACATAGTGCACT 59.224 41.667 25.12 25.12 0.00 4.40
502 503 5.080969 TGGGAGTAAGTAACATAGTGCAC 57.919 43.478 9.40 9.40 0.00 4.57
503 504 5.247564 AGTTGGGAGTAAGTAACATAGTGCA 59.752 40.000 0.00 0.00 0.00 4.57
504 505 5.731591 AGTTGGGAGTAAGTAACATAGTGC 58.268 41.667 0.00 0.00 0.00 4.40
505 506 6.979238 GCTAGTTGGGAGTAAGTAACATAGTG 59.021 42.308 0.00 0.00 0.00 2.74
506 507 6.097981 GGCTAGTTGGGAGTAAGTAACATAGT 59.902 42.308 0.00 0.00 0.00 2.12
507 508 6.324254 AGGCTAGTTGGGAGTAAGTAACATAG 59.676 42.308 0.00 0.00 0.00 2.23
508 509 6.200114 AGGCTAGTTGGGAGTAAGTAACATA 58.800 40.000 0.00 0.00 0.00 2.29
509 510 5.030820 AGGCTAGTTGGGAGTAAGTAACAT 58.969 41.667 0.00 0.00 0.00 2.71
510 511 4.422984 AGGCTAGTTGGGAGTAAGTAACA 58.577 43.478 0.00 0.00 0.00 2.41
511 512 5.451659 GCTAGGCTAGTTGGGAGTAAGTAAC 60.452 48.000 21.92 0.00 0.00 2.50
512 513 4.648307 GCTAGGCTAGTTGGGAGTAAGTAA 59.352 45.833 21.92 0.00 0.00 2.24
513 514 4.213513 GCTAGGCTAGTTGGGAGTAAGTA 58.786 47.826 21.92 0.00 0.00 2.24
514 515 3.032459 GCTAGGCTAGTTGGGAGTAAGT 58.968 50.000 21.92 0.00 0.00 2.24
515 516 3.031736 TGCTAGGCTAGTTGGGAGTAAG 58.968 50.000 21.92 0.00 0.00 2.34
516 517 3.110293 TGCTAGGCTAGTTGGGAGTAA 57.890 47.619 21.92 0.00 0.00 2.24
517 518 2.840640 TGCTAGGCTAGTTGGGAGTA 57.159 50.000 21.92 0.00 0.00 2.59
518 519 2.182516 ATGCTAGGCTAGTTGGGAGT 57.817 50.000 21.92 0.00 0.00 3.85
519 520 2.435805 TGAATGCTAGGCTAGTTGGGAG 59.564 50.000 21.92 0.00 0.00 4.30
520 521 2.477245 TGAATGCTAGGCTAGTTGGGA 58.523 47.619 21.92 0.00 0.00 4.37
521 522 3.281727 TTGAATGCTAGGCTAGTTGGG 57.718 47.619 21.92 0.00 0.00 4.12
522 523 5.643379 TTTTTGAATGCTAGGCTAGTTGG 57.357 39.130 21.92 0.00 0.00 3.77
836 850 1.513158 CCCACCTGCTCGTGTCTAG 59.487 63.158 3.55 0.00 31.47 2.43
920 934 3.399181 AATGCGCCTCGGAGGGAA 61.399 61.111 24.81 10.57 35.37 3.97
921 935 4.161295 CAATGCGCCTCGGAGGGA 62.161 66.667 24.81 1.97 35.37 4.20
1105 1203 4.980805 GACGAACCGCCTGGCACA 62.981 66.667 20.29 0.00 39.70 4.57
1111 1209 4.675029 CCAACCGACGAACCGCCT 62.675 66.667 0.00 0.00 0.00 5.52
1121 1219 1.605165 GCAACCCAATCCCAACCGA 60.605 57.895 0.00 0.00 0.00 4.69
1295 1393 1.135774 GGTCGCCGAGAAAATTCAACC 60.136 52.381 0.00 0.00 0.00 3.77
1297 1395 2.073816 GAGGTCGCCGAGAAAATTCAA 58.926 47.619 0.00 0.00 0.00 2.69
1319 1418 2.479730 CGATTCGTGTAGGAAGACAGGG 60.480 54.545 0.00 0.00 36.19 4.45
1350 1449 2.960819 GGTCCTATCCCGATTCGATTG 58.039 52.381 7.83 0.00 0.00 2.67
1421 1520 0.957395 AAGGATGGACGCAAGCACAG 60.957 55.000 0.00 0.00 45.62 3.66
1473 1572 4.469227 AGATCTCCATTGAACAGTAGTGCT 59.531 41.667 0.00 0.00 0.00 4.40
1544 1646 2.096442 CGCGCTCTGCAATGTCTCA 61.096 57.895 5.56 0.00 46.97 3.27
1546 1648 1.808799 CTCGCGCTCTGCAATGTCT 60.809 57.895 5.56 0.00 46.97 3.41
1658 1885 2.299326 AGGAACCGTAGTAGTGGTGT 57.701 50.000 0.00 0.00 38.82 4.16
1662 1889 1.990563 CGCAAAGGAACCGTAGTAGTG 59.009 52.381 0.00 0.00 0.00 2.74
1712 1939 6.588348 TCATGATTGACTACATTAACAGCG 57.412 37.500 0.00 0.00 0.00 5.18
1915 2146 4.000557 CGCGCGACATGGCCATAC 62.001 66.667 28.94 14.56 0.00 2.39
1923 2154 3.186047 GGTTAGCACGCGCGACAT 61.186 61.111 39.36 22.58 45.49 3.06
1930 2161 0.251073 TAAAGGGGAGGTTAGCACGC 59.749 55.000 0.00 0.00 0.00 5.34
1931 2162 4.618920 ATATAAAGGGGAGGTTAGCACG 57.381 45.455 0.00 0.00 0.00 5.34
2025 2278 9.737427 ATATGTCGAATTAGCACTAGTATATGC 57.263 33.333 0.00 0.00 42.39 3.14
2052 2305 7.241042 TCAATTACAGAAAGTAGGCAGTAGT 57.759 36.000 0.00 0.00 33.43 2.73
2054 2307 8.911918 TTTTCAATTACAGAAAGTAGGCAGTA 57.088 30.769 0.00 0.00 36.45 2.74
2189 2442 8.871686 ACAGAACTTACAAAAACATTTCCATC 57.128 30.769 0.00 0.00 0.00 3.51
2244 2499 9.116067 GTTAATTCTATACATACCACTGCCAAA 57.884 33.333 0.00 0.00 0.00 3.28
2317 2572 6.773638 ACTATTTTGAGACAGAACTGGACAT 58.226 36.000 6.76 0.00 34.19 3.06
2351 2606 2.230660 CTTCTCCACCCAAACCTTGAC 58.769 52.381 0.00 0.00 0.00 3.18
2364 2619 2.024846 TGTTTTGTTCCCCACTTCTCCA 60.025 45.455 0.00 0.00 0.00 3.86
2370 2625 1.099689 CACGTGTTTTGTTCCCCACT 58.900 50.000 7.58 0.00 0.00 4.00
2378 2633 3.549873 GCTAATTTGCACACGTGTTTTGT 59.450 39.130 20.79 5.05 0.00 2.83
2379 2634 3.549471 TGCTAATTTGCACACGTGTTTTG 59.451 39.130 20.79 12.33 38.12 2.44
2380 2635 3.775202 TGCTAATTTGCACACGTGTTTT 58.225 36.364 20.79 10.19 38.12 2.43
2381 2636 3.428746 TGCTAATTTGCACACGTGTTT 57.571 38.095 20.79 13.12 38.12 2.83
2382 2637 3.004210 TCATGCTAATTTGCACACGTGTT 59.996 39.130 20.79 5.94 46.33 3.32
2383 2638 2.551887 TCATGCTAATTTGCACACGTGT 59.448 40.909 17.22 17.22 46.33 4.49
2384 2639 2.910482 GTCATGCTAATTTGCACACGTG 59.090 45.455 16.75 15.48 46.33 4.49
2465 2727 0.329261 CAGTTTGATCAGGCCCCTCA 59.671 55.000 0.00 0.00 0.00 3.86
2518 2781 2.066340 CACACCTCCCTGCCTGTTA 58.934 57.895 0.00 0.00 0.00 2.41
2605 2875 9.311916 TGTGAACTTTTAATTTCTTTCATGTGG 57.688 29.630 0.00 0.00 0.00 4.17
2642 2912 5.816258 ACGCTATTTTTCCTACTCTAAAGGC 59.184 40.000 0.00 0.00 33.84 4.35
2649 2919 7.130303 ACTTTTGACGCTATTTTTCCTACTC 57.870 36.000 0.00 0.00 0.00 2.59
2665 2935 7.909641 CCACATTTCAAAATCCAAACTTTTGAC 59.090 33.333 9.93 0.00 46.62 3.18
2678 2948 5.307716 ACACCCAGAATCCACATTTCAAAAT 59.692 36.000 0.00 0.00 0.00 1.82
2689 2959 1.379916 CAGCCACACCCAGAATCCA 59.620 57.895 0.00 0.00 0.00 3.41
2732 3002 5.696724 CGGTAAGATTTGGCAGGTATAGAAG 59.303 44.000 0.00 0.00 0.00 2.85
2877 3147 3.924686 TCGTTAGGAAATGAAAGCGAGAC 59.075 43.478 0.00 0.00 0.00 3.36
2917 3187 0.167470 CACAAGCAGCCGACATGAAG 59.833 55.000 0.00 0.00 0.00 3.02
2918 3188 1.236616 CCACAAGCAGCCGACATGAA 61.237 55.000 0.00 0.00 0.00 2.57
2919 3189 1.672030 CCACAAGCAGCCGACATGA 60.672 57.895 0.00 0.00 0.00 3.07
3375 3645 4.545823 TGAACATCAAAAGTCGGTTCAC 57.454 40.909 0.00 0.00 41.87 3.18
3460 3732 2.979678 TCTCCCAGCTTCAGTAAAAGGT 59.020 45.455 0.00 0.00 37.46 3.50
3468 3740 3.008330 CAGTTTCATCTCCCAGCTTCAG 58.992 50.000 0.00 0.00 0.00 3.02
3512 3792 3.760684 CTGCTAGCAGGAAAACTTGGAAT 59.239 43.478 33.06 0.00 40.17 3.01
3532 3812 2.103771 CCAGACCCCATGATGTCTACTG 59.896 54.545 14.32 6.21 39.76 2.74
3570 3850 8.609478 TTTGTATGTTTCACTCGTTTCTTTTC 57.391 30.769 0.00 0.00 0.00 2.29
3629 3909 5.753921 GCTTGTGCTCCTACTATAACGAATT 59.246 40.000 0.00 0.00 36.03 2.17
3698 3978 1.537776 GGTGATGTCTCCAGCTCATCG 60.538 57.143 7.58 0.00 40.25 3.84
3712 3992 0.677731 AACCTCGGCATGTGGTGATG 60.678 55.000 3.10 0.00 43.56 3.07
3924 4204 7.430211 CAGATGTGATACAAATACAATGCACAC 59.570 37.037 0.00 0.00 37.77 3.82
4067 4347 6.927294 AGTAACTGGACTAATAAAGCATGC 57.073 37.500 10.51 10.51 0.00 4.06
4071 4351 8.999220 ACACTTAGTAACTGGACTAATAAAGC 57.001 34.615 5.30 0.00 40.31 3.51
4104 4384 3.686016 ACAAGGGTATCGAAAGTGCAAT 58.314 40.909 0.00 0.00 0.00 3.56
4115 4395 5.735766 AGAACTAAGCTTGACAAGGGTATC 58.264 41.667 16.80 0.00 0.00 2.24
4129 4409 7.650104 GGTACATGATTCTAGTGAGAACTAAGC 59.350 40.741 0.00 0.00 44.50 3.09
4152 4432 6.442564 ACCTACTACCAAAACATCATCTGGTA 59.557 38.462 0.00 0.00 42.23 3.25
4157 4437 6.535508 GTCTCACCTACTACCAAAACATCATC 59.464 42.308 0.00 0.00 0.00 2.92
4231 4517 4.518278 TGCAGGTTACATGGATACCATT 57.482 40.909 13.49 0.00 42.23 3.16
4269 4902 2.602257 TTCTGCCATGTCAGATACCG 57.398 50.000 7.37 0.00 42.12 4.02
4319 4958 4.671766 CGCTAAAGAAAGGTTTGGAATCCG 60.672 45.833 0.00 0.00 0.00 4.18
4330 4974 2.930682 GACTAGGCACGCTAAAGAAAGG 59.069 50.000 0.00 0.00 0.00 3.11
4337 4981 3.887621 AGAAATGACTAGGCACGCTAA 57.112 42.857 0.00 0.00 0.00 3.09
4626 5271 2.621338 TGCCGTCTATTCTGCTGAAAG 58.379 47.619 10.27 9.06 35.63 2.62
4642 5287 1.450312 GACCCTCACATCCTTGCCG 60.450 63.158 0.00 0.00 0.00 5.69
4669 5314 1.967343 TTGGGGCCTTTGGGGTTCTT 61.967 55.000 0.84 0.00 37.43 2.52
4684 5329 2.350458 CCGAGGGCCATGTTTTGGG 61.350 63.158 6.18 0.00 46.55 4.12
4723 5368 4.571250 GTGATCGGCTTCACGTCA 57.429 55.556 2.32 0.00 36.93 4.35
4982 5627 6.060136 ACCCAGAGACATGACATAAATGATG 58.940 40.000 0.00 0.00 41.79 3.07
5058 5703 4.458397 ACAGCCTAATCTGACCATGATTG 58.542 43.478 0.00 0.00 37.51 2.67
5242 5887 5.470437 TGTATGGACAAGTACGAATTTGCAA 59.530 36.000 0.00 0.00 30.68 4.08
5302 7807 2.822764 CTACGGCTTGTGGTAGATTCC 58.177 52.381 0.00 0.00 38.69 3.01
5315 7820 1.615883 AGATCATCAATCGCTACGGCT 59.384 47.619 0.00 0.00 39.55 5.52
5325 7830 2.152016 CTCATGGCGCAGATCATCAAT 58.848 47.619 10.83 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.