Multiple sequence alignment - TraesCS1D01G138500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G138500 chr1D 100.000 3749 0 0 1 3749 189887647 189883899 0.000000e+00 6924.0
1 TraesCS1D01G138500 chr1A 94.435 3019 124 19 748 3749 167800169 167803160 0.000000e+00 4604.0
2 TraesCS1D01G138500 chr1A 95.514 691 26 5 1 687 267988199 267987510 0.000000e+00 1099.0
3 TraesCS1D01G138500 chr1B 94.635 2330 83 14 704 3019 263749988 263747687 0.000000e+00 3572.0
4 TraesCS1D01G138500 chr1B 94.501 491 23 3 3263 3749 263747339 263746849 0.000000e+00 754.0
5 TraesCS1D01G138500 chr1B 95.406 283 11 2 2983 3264 263747685 263747404 2.050000e-122 449.0
6 TraesCS1D01G138500 chr6A 95.930 688 24 4 1 684 181011078 181011765 0.000000e+00 1112.0
7 TraesCS1D01G138500 chr2D 95.803 691 22 6 1 687 441885087 441885774 0.000000e+00 1109.0
8 TraesCS1D01G138500 chr7D 95.658 691 26 4 1 687 153305578 153304888 0.000000e+00 1107.0
9 TraesCS1D01G138500 chr7D 95.658 691 25 5 1 687 21585031 21584342 0.000000e+00 1105.0
10 TraesCS1D01G138500 chr7D 95.292 701 21 8 1 691 101050889 101050191 0.000000e+00 1101.0
11 TraesCS1D01G138500 chr7D 95.376 692 28 4 1 688 142205364 142204673 0.000000e+00 1098.0
12 TraesCS1D01G138500 chr5D 95.658 691 25 5 1 687 405165151 405165840 0.000000e+00 1105.0
13 TraesCS1D01G138500 chr2A 95.646 689 28 2 1 687 615495094 615494406 0.000000e+00 1105.0
14 TraesCS1D01G138500 chr3B 90.909 44 2 2 3666 3708 792709159 792709201 1.450000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G138500 chr1D 189883899 189887647 3748 True 6924.000000 6924 100.000000 1 3749 1 chr1D.!!$R1 3748
1 TraesCS1D01G138500 chr1A 167800169 167803160 2991 False 4604.000000 4604 94.435000 748 3749 1 chr1A.!!$F1 3001
2 TraesCS1D01G138500 chr1A 267987510 267988199 689 True 1099.000000 1099 95.514000 1 687 1 chr1A.!!$R1 686
3 TraesCS1D01G138500 chr1B 263746849 263749988 3139 True 1591.666667 3572 94.847333 704 3749 3 chr1B.!!$R1 3045
4 TraesCS1D01G138500 chr6A 181011078 181011765 687 False 1112.000000 1112 95.930000 1 684 1 chr6A.!!$F1 683
5 TraesCS1D01G138500 chr2D 441885087 441885774 687 False 1109.000000 1109 95.803000 1 687 1 chr2D.!!$F1 686
6 TraesCS1D01G138500 chr7D 153304888 153305578 690 True 1107.000000 1107 95.658000 1 687 1 chr7D.!!$R4 686
7 TraesCS1D01G138500 chr7D 21584342 21585031 689 True 1105.000000 1105 95.658000 1 687 1 chr7D.!!$R1 686
8 TraesCS1D01G138500 chr7D 101050191 101050889 698 True 1101.000000 1101 95.292000 1 691 1 chr7D.!!$R2 690
9 TraesCS1D01G138500 chr7D 142204673 142205364 691 True 1098.000000 1098 95.376000 1 688 1 chr7D.!!$R3 687
10 TraesCS1D01G138500 chr5D 405165151 405165840 689 False 1105.000000 1105 95.658000 1 687 1 chr5D.!!$F1 686
11 TraesCS1D01G138500 chr2A 615494406 615495094 688 True 1105.000000 1105 95.646000 1 687 1 chr2A.!!$R1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 838 0.320374 CCTGTGTAAACGCCTCTCCA 59.68 55.0 0.0 0.0 0.0 3.86 F
1884 1912 0.459899 TGTCCATGATCCTCGTTCCG 59.54 55.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2448 2480 0.035881 ACAGCTCACACTCCACCATG 59.964 55.000 0.0 0.0 0.0 3.66 R
3636 3788 1.202758 ACAGAAAACCGAGATGCACCA 60.203 47.619 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 156 2.351244 CGGCAGCCTACTGTCTCCA 61.351 63.158 10.54 0.00 46.79 3.86
374 381 1.814248 GCGAGAAGGTTCAGTTGGGTT 60.814 52.381 0.00 0.00 0.00 4.11
566 574 7.552687 CGACTGATTCTCCTATTATCTCTAGCT 59.447 40.741 0.00 0.00 0.00 3.32
653 664 6.829229 ATATATTGTAACCGACTCCGATGA 57.171 37.500 0.00 0.00 38.22 2.92
673 685 5.581126 TGAAATACAATGAGTTGCATCCC 57.419 39.130 0.00 0.00 38.96 3.85
688 700 5.282055 TGCATCCCATAGTCTTCTACAAG 57.718 43.478 0.00 0.00 0.00 3.16
689 701 4.716784 TGCATCCCATAGTCTTCTACAAGT 59.283 41.667 0.00 0.00 0.00 3.16
690 702 5.053145 GCATCCCATAGTCTTCTACAAGTG 58.947 45.833 0.00 0.00 0.00 3.16
691 703 5.395768 GCATCCCATAGTCTTCTACAAGTGT 60.396 44.000 0.00 0.00 0.00 3.55
692 704 6.644347 CATCCCATAGTCTTCTACAAGTGTT 58.356 40.000 0.00 0.00 0.00 3.32
693 705 6.037786 TCCCATAGTCTTCTACAAGTGTTG 57.962 41.667 0.00 0.00 0.00 3.33
694 706 5.046591 TCCCATAGTCTTCTACAAGTGTTGG 60.047 44.000 0.00 0.00 34.12 3.77
695 707 5.046591 CCCATAGTCTTCTACAAGTGTTGGA 60.047 44.000 0.00 0.00 34.12 3.53
696 708 6.102663 CCATAGTCTTCTACAAGTGTTGGAG 58.897 44.000 0.00 0.00 43.24 3.86
702 714 4.537135 TCTACAAGTGTTGGAGATGACC 57.463 45.455 0.00 0.00 45.52 4.02
826 838 0.320374 CCTGTGTAAACGCCTCTCCA 59.680 55.000 0.00 0.00 0.00 3.86
901 922 3.656651 AAAGCGACAAAAAGCAAAAGC 57.343 38.095 0.00 0.00 35.48 3.51
902 923 1.570813 AGCGACAAAAAGCAAAAGCC 58.429 45.000 0.00 0.00 35.48 4.35
903 924 1.136891 AGCGACAAAAAGCAAAAGCCT 59.863 42.857 0.00 0.00 35.48 4.58
904 925 1.522676 GCGACAAAAAGCAAAAGCCTC 59.477 47.619 0.00 0.00 0.00 4.70
905 926 2.808244 CGACAAAAAGCAAAAGCCTCA 58.192 42.857 0.00 0.00 0.00 3.86
906 927 3.186119 CGACAAAAAGCAAAAGCCTCAA 58.814 40.909 0.00 0.00 0.00 3.02
907 928 3.243643 CGACAAAAAGCAAAAGCCTCAAG 59.756 43.478 0.00 0.00 0.00 3.02
908 929 3.534554 ACAAAAAGCAAAAGCCTCAAGG 58.465 40.909 0.00 0.00 38.53 3.61
909 930 2.874086 CAAAAAGCAAAAGCCTCAAGGG 59.126 45.455 0.00 0.00 35.18 3.95
915 936 2.428530 GCAAAAGCCTCAAGGGGAATAG 59.571 50.000 0.00 0.00 35.18 1.73
1262 1283 0.901114 TCCGGGGAGTCGTTCATTCA 60.901 55.000 0.00 0.00 0.00 2.57
1385 1409 6.151985 CACCCTGTACAACTTTTATAATGCCA 59.848 38.462 0.00 0.00 0.00 4.92
1439 1467 4.207955 TGTAGTCTCACACACTCTCACTT 58.792 43.478 0.00 0.00 0.00 3.16
1440 1468 5.374071 TGTAGTCTCACACACTCTCACTTA 58.626 41.667 0.00 0.00 0.00 2.24
1695 1723 3.319198 GAGGCGGGGAACAGGACA 61.319 66.667 0.00 0.00 0.00 4.02
1791 1819 3.547513 GGGATAGGGGCGAGCGTT 61.548 66.667 0.00 0.00 0.00 4.84
1878 1906 0.835941 ACTGGCTGTCCATGATCCTC 59.164 55.000 0.00 0.00 42.51 3.71
1884 1912 0.459899 TGTCCATGATCCTCGTTCCG 59.540 55.000 0.00 0.00 0.00 4.30
1936 1964 1.804372 GCACGAGCTTGATCCAGGTAG 60.804 57.143 8.31 1.63 37.91 3.18
1937 1965 1.115467 ACGAGCTTGATCCAGGTAGG 58.885 55.000 8.31 3.77 39.47 3.18
1938 1966 1.115467 CGAGCTTGATCCAGGTAGGT 58.885 55.000 0.00 0.00 39.02 3.08
1939 1967 2.307768 CGAGCTTGATCCAGGTAGGTA 58.692 52.381 0.00 0.00 39.02 3.08
1940 1968 2.693591 CGAGCTTGATCCAGGTAGGTAA 59.306 50.000 0.00 0.00 39.02 2.85
1941 1969 3.132289 CGAGCTTGATCCAGGTAGGTAAA 59.868 47.826 0.00 0.00 39.02 2.01
1942 1970 4.382685 CGAGCTTGATCCAGGTAGGTAAAA 60.383 45.833 0.00 0.00 39.02 1.52
1943 1971 4.844884 AGCTTGATCCAGGTAGGTAAAAC 58.155 43.478 0.00 0.00 39.02 2.43
1963 1991 4.154347 CTCCTGTCCGGCCTCTGC 62.154 72.222 0.00 0.00 0.00 4.26
2009 2038 2.205074 CGCATCTCGGCAAGTTAATCT 58.795 47.619 0.00 0.00 33.78 2.40
2010 2039 2.033407 CGCATCTCGGCAAGTTAATCTG 60.033 50.000 0.00 0.00 33.78 2.90
2011 2040 3.198068 GCATCTCGGCAAGTTAATCTGA 58.802 45.455 0.00 0.00 0.00 3.27
2012 2041 3.247173 GCATCTCGGCAAGTTAATCTGAG 59.753 47.826 0.00 0.00 35.19 3.35
2013 2042 4.437239 CATCTCGGCAAGTTAATCTGAGT 58.563 43.478 0.00 0.00 35.36 3.41
2014 2043 5.592054 CATCTCGGCAAGTTAATCTGAGTA 58.408 41.667 0.00 0.00 35.36 2.59
2015 2044 5.854010 TCTCGGCAAGTTAATCTGAGTAT 57.146 39.130 0.00 0.00 35.36 2.12
2016 2045 5.833082 TCTCGGCAAGTTAATCTGAGTATC 58.167 41.667 0.00 0.00 35.36 2.24
2017 2046 5.594725 TCTCGGCAAGTTAATCTGAGTATCT 59.405 40.000 0.00 0.00 35.36 1.98
2047 2076 3.334583 TTTCTTGTCAGAATCTCCGGG 57.665 47.619 0.00 0.00 38.89 5.73
2054 2083 3.878667 GAATCTCCGGGGCCAGGG 61.879 72.222 23.09 14.68 0.00 4.45
2117 2146 1.448985 GCCGCTGGTTTGAGTATGAA 58.551 50.000 0.00 0.00 0.00 2.57
2192 2221 3.860605 CGGCGATCATGGGGTGGA 61.861 66.667 0.00 0.00 0.00 4.02
2208 2237 2.080693 GTGGATAACCGCATGACAACA 58.919 47.619 0.00 0.00 45.14 3.33
2369 2401 3.956377 TCCTCCGGAGATTCCTGC 58.044 61.111 33.39 0.00 33.30 4.85
2371 2403 0.757188 TCCTCCGGAGATTCCTGCTC 60.757 60.000 33.39 0.00 33.30 4.26
2372 2404 1.745264 CTCCGGAGATTCCTGCTCC 59.255 63.158 28.21 0.00 46.74 4.70
2376 2408 3.721793 GGAGATTCCTGCTCCCATG 57.278 57.895 0.00 0.00 44.96 3.66
2434 2466 4.437587 ATCCCAGGCCTGCACAGC 62.438 66.667 28.39 0.00 0.00 4.40
2517 2549 1.993391 GATGGAAGGGTGGTCCGGA 60.993 63.158 0.00 0.00 41.52 5.14
2797 2829 5.877012 TGCATGGTTTATGTTCTCTCTTCTC 59.123 40.000 0.00 0.00 39.08 2.87
2930 2962 5.573337 AGCACAATGGAATTAGAAAGCTC 57.427 39.130 0.00 0.00 32.46 4.09
2941 2975 7.123997 TGGAATTAGAAAGCTCAATGCCATAAA 59.876 33.333 6.10 0.00 44.23 1.40
2977 3011 9.918630 AAAAATCAGAATGGAAAGATGTTAGTG 57.081 29.630 0.00 0.00 36.16 2.74
3036 3110 1.098050 GAATGTCCTTCGCAGGCAAT 58.902 50.000 0.00 0.00 40.58 3.56
3040 3114 1.003118 TGTCCTTCGCAGGCAATAACT 59.997 47.619 0.00 0.00 40.58 2.24
3120 3200 5.869649 AGTTTACCAAGTTTCAAATGGCT 57.130 34.783 0.00 0.00 37.77 4.75
3129 3209 9.084533 ACCAAGTTTCAAATGGCTAAAACTATA 57.915 29.630 0.00 0.00 40.16 1.31
3236 3316 4.339247 ACAAACATTTCTCAACAGACTGGG 59.661 41.667 7.51 0.00 0.00 4.45
3320 3468 8.244113 CAGTTTTCTCCAACTTATCCATAAACC 58.756 37.037 0.00 0.00 34.60 3.27
3403 3551 2.165437 ACAACACACAGGTTCGCAATTT 59.835 40.909 0.00 0.00 0.00 1.82
3578 3728 4.526262 TCAACCATTTCGAAACCATCCATT 59.474 37.500 13.81 0.00 0.00 3.16
3671 3823 5.449999 GGTTTTCTGTTTTCACCGACTCATT 60.450 40.000 0.00 0.00 0.00 2.57
3726 3882 3.853207 ACTGGAGGTAAGGACTTGTACA 58.147 45.455 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
149 156 2.659610 GGCCTCAGCACTCGAACT 59.340 61.111 0.00 0.00 42.56 3.01
374 381 4.491676 GGTACATGAAGAACACGAAGCTA 58.508 43.478 0.00 0.00 0.00 3.32
624 635 6.149973 CGGAGTCGGTTACAATATATACAGGA 59.850 42.308 0.00 0.00 0.00 3.86
653 664 6.835488 ACTATGGGATGCAACTCATTGTATTT 59.165 34.615 19.40 0.00 40.77 1.40
673 685 6.925211 TCTCCAACACTTGTAGAAGACTATG 58.075 40.000 6.63 0.00 32.98 2.23
688 700 1.168714 GGCAAGGTCATCTCCAACAC 58.831 55.000 0.00 0.00 0.00 3.32
689 701 0.038166 GGGCAAGGTCATCTCCAACA 59.962 55.000 0.00 0.00 0.00 3.33
690 702 0.329596 AGGGCAAGGTCATCTCCAAC 59.670 55.000 0.00 0.00 0.00 3.77
691 703 0.620556 GAGGGCAAGGTCATCTCCAA 59.379 55.000 0.00 0.00 0.00 3.53
692 704 0.252881 AGAGGGCAAGGTCATCTCCA 60.253 55.000 0.00 0.00 0.00 3.86
693 705 0.915364 AAGAGGGCAAGGTCATCTCC 59.085 55.000 0.00 0.00 0.00 3.71
694 706 2.026822 TGAAAGAGGGCAAGGTCATCTC 60.027 50.000 0.00 0.00 0.00 2.75
695 707 1.988107 TGAAAGAGGGCAAGGTCATCT 59.012 47.619 0.00 0.00 0.00 2.90
696 708 2.496899 TGAAAGAGGGCAAGGTCATC 57.503 50.000 0.00 0.00 0.00 2.92
697 709 2.978156 TTGAAAGAGGGCAAGGTCAT 57.022 45.000 0.00 0.00 0.00 3.06
698 710 2.174639 TCTTTGAAAGAGGGCAAGGTCA 59.825 45.455 3.02 0.00 32.71 4.02
699 711 2.863809 TCTTTGAAAGAGGGCAAGGTC 58.136 47.619 3.02 0.00 32.71 3.85
826 838 6.237901 TGTATACTGTGCATTCAAAAGGAGT 58.762 36.000 4.17 0.00 0.00 3.85
901 922 0.837272 TTCGGCTATTCCCCTTGAGG 59.163 55.000 0.00 0.00 0.00 3.86
902 923 1.762957 TCTTCGGCTATTCCCCTTGAG 59.237 52.381 0.00 0.00 0.00 3.02
903 924 1.874129 TCTTCGGCTATTCCCCTTGA 58.126 50.000 0.00 0.00 0.00 3.02
904 925 2.565841 CTTCTTCGGCTATTCCCCTTG 58.434 52.381 0.00 0.00 0.00 3.61
905 926 1.490910 CCTTCTTCGGCTATTCCCCTT 59.509 52.381 0.00 0.00 0.00 3.95
906 927 1.132500 CCTTCTTCGGCTATTCCCCT 58.868 55.000 0.00 0.00 0.00 4.79
907 928 0.535328 GCCTTCTTCGGCTATTCCCC 60.535 60.000 0.00 0.00 46.63 4.81
908 929 3.008141 GCCTTCTTCGGCTATTCCC 57.992 57.895 0.00 0.00 46.63 3.97
1385 1409 5.977725 CGGTCGTCTTTGTGAATCATAGTAT 59.022 40.000 0.00 0.00 0.00 2.12
1439 1467 0.889994 CTGCAGCCAAAGCCAATGTA 59.110 50.000 0.00 0.00 41.25 2.29
1440 1468 1.669440 CTGCAGCCAAAGCCAATGT 59.331 52.632 0.00 0.00 41.25 2.71
1647 1675 2.805353 CTGGCGTGGTCGAACTCG 60.805 66.667 19.86 19.86 39.71 4.18
1695 1723 1.831652 CGAACCTGGAGTTGAGGCCT 61.832 60.000 3.86 3.86 39.40 5.19
1791 1819 0.178944 TCTCGGTGTCTTCTTCCCCA 60.179 55.000 0.00 0.00 0.00 4.96
1884 1912 0.179215 CGTTGCATTGAGCTCCGAAC 60.179 55.000 12.15 5.89 45.94 3.95
1936 1964 1.066358 CCGGACAGGAGAGGTTTTACC 60.066 57.143 0.00 0.00 45.00 2.85
1937 1965 1.675116 GCCGGACAGGAGAGGTTTTAC 60.675 57.143 5.05 0.00 45.00 2.01
1938 1966 0.611714 GCCGGACAGGAGAGGTTTTA 59.388 55.000 5.05 0.00 45.00 1.52
1939 1967 1.375326 GCCGGACAGGAGAGGTTTT 59.625 57.895 5.05 0.00 45.00 2.43
1940 1968 2.593956 GGCCGGACAGGAGAGGTTT 61.594 63.158 5.05 0.00 45.00 3.27
1941 1969 3.003763 GGCCGGACAGGAGAGGTT 61.004 66.667 5.05 0.00 45.00 3.50
1942 1970 3.966930 GAGGCCGGACAGGAGAGGT 62.967 68.421 11.69 0.00 45.00 3.85
1943 1971 3.151022 GAGGCCGGACAGGAGAGG 61.151 72.222 11.69 0.00 45.00 3.69
2000 2029 8.986991 ACCTCAATCAGATACTCAGATTAACTT 58.013 33.333 0.00 0.00 31.98 2.66
2009 2038 7.453393 ACAAGAAAACCTCAATCAGATACTCA 58.547 34.615 0.00 0.00 0.00 3.41
2010 2039 7.604164 TGACAAGAAAACCTCAATCAGATACTC 59.396 37.037 0.00 0.00 0.00 2.59
2011 2040 7.453393 TGACAAGAAAACCTCAATCAGATACT 58.547 34.615 0.00 0.00 0.00 2.12
2012 2041 7.604164 TCTGACAAGAAAACCTCAATCAGATAC 59.396 37.037 0.00 0.00 34.66 2.24
2013 2042 7.679783 TCTGACAAGAAAACCTCAATCAGATA 58.320 34.615 0.00 0.00 34.66 1.98
2014 2043 6.537355 TCTGACAAGAAAACCTCAATCAGAT 58.463 36.000 0.00 0.00 34.66 2.90
2015 2044 5.928976 TCTGACAAGAAAACCTCAATCAGA 58.071 37.500 0.00 0.00 35.98 3.27
2016 2045 6.624352 TTCTGACAAGAAAACCTCAATCAG 57.376 37.500 0.00 0.00 39.52 2.90
2017 2046 7.000472 AGATTCTGACAAGAAAACCTCAATCA 59.000 34.615 0.00 0.00 45.44 2.57
2047 2076 3.844090 GTCGAGAGAGCCCTGGCC 61.844 72.222 4.13 0.00 43.49 5.36
2054 2083 4.539881 GCGGACCGTCGAGAGAGC 62.540 72.222 16.73 0.00 43.49 4.09
2117 2146 1.768888 ACGGTGAAGTTGGACCCCT 60.769 57.895 0.00 0.00 0.00 4.79
2151 2180 1.009389 GTGCTCCTGAACCGAAGACG 61.009 60.000 0.00 0.00 39.43 4.18
2192 2221 3.119173 CCCAAATGTTGTCATGCGGTTAT 60.119 43.478 0.00 0.00 34.19 1.89
2208 2237 2.046285 GTAGCGCACCTGCCCAAAT 61.046 57.895 11.47 0.00 37.91 2.32
2361 2393 0.536915 GAGCCATGGGAGCAGGAATC 60.537 60.000 15.13 0.00 0.00 2.52
2366 2398 2.764737 ATGGGAGCCATGGGAGCAG 61.765 63.158 15.13 0.00 43.39 4.24
2374 2406 3.882326 CCTCGCCATGGGAGCCAT 61.882 66.667 15.13 0.00 46.37 4.40
2376 2408 3.797353 TTCCTCGCCATGGGAGCC 61.797 66.667 15.13 0.00 40.57 4.70
2434 2466 0.968901 ACCATGGCAGCAGTGATTGG 60.969 55.000 13.04 0.00 0.00 3.16
2440 2472 2.353958 CTCCACCATGGCAGCAGT 59.646 61.111 13.04 0.00 37.47 4.40
2448 2480 0.035881 ACAGCTCACACTCCACCATG 59.964 55.000 0.00 0.00 0.00 3.66
2634 2666 1.433534 CGAGGTTGAAGCTGAGGAAC 58.566 55.000 0.00 0.00 0.00 3.62
2955 2989 5.591877 GGCACTAACATCTTTCCATTCTGAT 59.408 40.000 0.00 0.00 0.00 2.90
2977 3011 7.104939 AGAGATGCATAGAAGATAAATCAGGC 58.895 38.462 0.00 0.00 0.00 4.85
3236 3316 5.333263 GCTGCATGTTTTTGTGTAAATGTCC 60.333 40.000 0.00 0.00 0.00 4.02
3320 3468 5.065731 GTCTGAGCAGAAATTATCACCTTGG 59.934 44.000 1.08 0.00 39.48 3.61
3397 3545 4.142182 TGCTTGGCCTTATCTACAAATTGC 60.142 41.667 3.32 0.00 0.00 3.56
3403 3551 3.213206 CCATGCTTGGCCTTATCTACA 57.787 47.619 3.32 0.00 35.85 2.74
3465 3613 4.024048 CAGTTAAGTTGTTGCTGGATCGTT 60.024 41.667 0.00 0.00 0.00 3.85
3578 3728 1.535028 GTGTGAATTGTGGATGCGTGA 59.465 47.619 0.00 0.00 0.00 4.35
3636 3788 1.202758 ACAGAAAACCGAGATGCACCA 60.203 47.619 0.00 0.00 0.00 4.17
3642 3794 4.830826 GGTGAAAACAGAAAACCGAGAT 57.169 40.909 0.00 0.00 0.00 2.75
3647 3799 3.375922 TGAGTCGGTGAAAACAGAAAACC 59.624 43.478 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.