Multiple sequence alignment - TraesCS1D01G137900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G137900 chr1D 100.000 6466 0 0 1 6466 188461700 188455235 0.000000e+00 11941
1 TraesCS1D01G137900 chr1B 95.400 4717 168 22 1553 6243 262921597 262916904 0.000000e+00 7463
2 TraesCS1D01G137900 chr1B 92.289 817 28 14 763 1556 262922686 262921882 0.000000e+00 1127
3 TraesCS1D01G137900 chr1B 84.964 419 25 16 1 389 262926594 262926184 2.190000e-104 390
4 TraesCS1D01G137900 chr6D 89.418 189 10 4 546 732 136863584 136863404 5.040000e-56 230
5 TraesCS1D01G137900 chr3A 87.640 178 11 5 550 725 604151204 604151036 5.110000e-46 196
6 TraesCS1D01G137900 chr1A 87.151 179 14 4 550 726 285728582 285728411 1.840000e-45 195
7 TraesCS1D01G137900 chr6B 85.484 186 17 4 546 729 688664232 688664055 1.110000e-42 185
8 TraesCS1D01G137900 chr3B 83.422 187 8 9 547 729 766041853 766042020 1.120000e-32 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G137900 chr1D 188455235 188461700 6465 True 11941.000000 11941 100.000000 1 6466 1 chr1D.!!$R1 6465
1 TraesCS1D01G137900 chr1B 262916904 262926594 9690 True 2993.333333 7463 90.884333 1 6243 3 chr1B.!!$R1 6242


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 450 0.035458 GGAGCAGTGCTACCTTGTGT 59.965 55.000 19.77 0.0 39.88 3.72 F
512 1077 0.106918 GGACCCCATATTCCGTGCAA 60.107 55.000 0.00 0.0 0.00 4.08 F
812 4023 0.108138 GAATCCCCTCGTGACACCTG 60.108 60.000 0.00 0.0 0.00 4.00 F
891 4109 0.327924 TTGCTGTCATCCCCATCGTT 59.672 50.000 0.00 0.0 0.00 3.85 F
1493 4727 0.791610 GTAAAACGACCGCAATGCCG 60.792 55.000 0.00 0.0 0.00 5.69 F
2847 6373 1.550072 CATGGGGAATGTGTTTGACCC 59.450 52.381 0.00 0.0 39.79 4.46 F
3213 6739 0.107897 TATGCCATCGCCGTTTCAGT 60.108 50.000 0.00 0.0 0.00 3.41 F
3771 7299 0.179000 AGGCGTTGATCCATCCTCAC 59.821 55.000 0.00 0.0 0.00 3.51 F
5082 8616 0.036105 TGCTGCATCCTCATCAACGT 60.036 50.000 0.00 0.0 0.00 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2411 5937 0.171007 CATCCACCGGCACAAATGAC 59.829 55.000 0.0 0.0 0.00 3.06 R
2551 6077 0.244450 CGGGAAGTAACTGCGTACCA 59.756 55.000 0.0 0.0 0.00 3.25 R
2847 6373 1.467734 GAGGAAGCAGCACAATGACAG 59.532 52.381 0.0 0.0 0.00 3.51 R
2884 6410 1.732259 GCACCAGACCGACAATAACAG 59.268 52.381 0.0 0.0 0.00 3.16 R
2986 6512 0.322816 TCATGTGGCTCAAAGGGCTC 60.323 55.000 0.0 0.0 0.00 4.70 R
4016 7549 0.033504 AGCACGGTACAGTTCAGGTG 59.966 55.000 0.0 0.0 0.00 4.00 R
4840 8373 1.416813 CCGAGCAAGAGCAAGCTACG 61.417 60.000 0.0 0.0 45.49 3.51 R
5269 8804 0.109086 CACTACTCACGACAGCCAGG 60.109 60.000 0.0 0.0 0.00 4.45 R
6414 9962 0.163788 CCGTGTCGTTTGTCTCATGC 59.836 55.000 0.0 0.0 0.00 4.06 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.941542 TTGCTGCAAAGGTCACGTAC 59.058 50.000 13.51 0.00 0.00 3.67
89 91 0.831966 TCACGGGTGTTACAACTGGT 59.168 50.000 14.20 3.10 30.58 4.00
90 92 1.209990 TCACGGGTGTTACAACTGGTT 59.790 47.619 14.20 0.00 30.58 3.67
95 97 2.551032 GGGTGTTACAACTGGTTACTGC 59.449 50.000 0.00 0.00 30.52 4.40
97 99 3.207778 GTGTTACAACTGGTTACTGCCA 58.792 45.455 0.00 0.00 36.97 4.92
128 130 1.705337 GACGCGTCATCCCACATTGG 61.705 60.000 33.09 0.00 37.25 3.16
169 171 0.904649 AATGCTGGAGTCGATGGACA 59.095 50.000 10.69 0.00 45.92 4.02
190 192 0.532862 CAGTGCTGGAACCGACAACT 60.533 55.000 0.00 0.00 0.00 3.16
200 202 2.253758 CCGACAACTGTGGGTGCTG 61.254 63.158 2.90 0.00 38.84 4.41
214 227 0.985549 GTGCTGAAGACGTCGACATC 59.014 55.000 17.16 10.45 0.00 3.06
242 255 0.953471 GTATGCTGCAACCGACACCA 60.953 55.000 6.36 0.00 0.00 4.17
243 256 0.673333 TATGCTGCAACCGACACCAG 60.673 55.000 6.36 0.00 0.00 4.00
244 257 2.280797 GCTGCAACCGACACCAGA 60.281 61.111 0.00 0.00 0.00 3.86
245 258 2.320587 GCTGCAACCGACACCAGAG 61.321 63.158 0.00 0.00 0.00 3.35
246 259 1.367471 CTGCAACCGACACCAGAGA 59.633 57.895 0.00 0.00 0.00 3.10
247 260 0.946221 CTGCAACCGACACCAGAGAC 60.946 60.000 0.00 0.00 0.00 3.36
248 261 2.022129 GCAACCGACACCAGAGACG 61.022 63.158 0.00 0.00 0.00 4.18
271 294 1.153329 ACACCGGTGCTCAAAACGA 60.153 52.632 34.26 0.00 0.00 3.85
272 295 1.278637 CACCGGTGCTCAAAACGAC 59.721 57.895 24.02 0.00 0.00 4.34
292 315 0.036306 AACCACGGGATGTTGGAGAC 59.964 55.000 0.00 0.00 0.00 3.36
295 318 0.175760 CACGGGATGTTGGAGACGAT 59.824 55.000 0.00 0.00 0.00 3.73
296 319 0.175760 ACGGGATGTTGGAGACGATG 59.824 55.000 0.00 0.00 0.00 3.84
297 320 0.530650 CGGGATGTTGGAGACGATGG 60.531 60.000 0.00 0.00 0.00 3.51
298 321 0.815615 GGGATGTTGGAGACGATGGC 60.816 60.000 0.00 0.00 0.00 4.40
299 322 0.107703 GGATGTTGGAGACGATGGCA 60.108 55.000 0.00 0.00 0.00 4.92
300 323 1.009829 GATGTTGGAGACGATGGCAC 58.990 55.000 0.00 0.00 0.00 5.01
301 324 0.392998 ATGTTGGAGACGATGGCACC 60.393 55.000 0.00 0.00 0.00 5.01
302 325 1.003839 GTTGGAGACGATGGCACCA 60.004 57.895 0.00 0.00 0.00 4.17
354 385 1.080434 GCTGGAGACGACGAGCTTT 60.080 57.895 0.00 0.00 38.30 3.51
356 387 0.734253 CTGGAGACGACGAGCTTTGG 60.734 60.000 0.00 0.00 0.00 3.28
394 425 4.821589 GCTGAAGGCGACCGAGGG 62.822 72.222 0.00 0.00 0.00 4.30
395 426 4.148825 CTGAAGGCGACCGAGGGG 62.149 72.222 0.00 0.00 40.11 4.79
418 449 2.846371 GGAGCAGTGCTACCTTGTG 58.154 57.895 19.77 0.00 39.88 3.33
419 450 0.035458 GGAGCAGTGCTACCTTGTGT 59.965 55.000 19.77 0.00 39.88 3.72
420 451 1.543429 GGAGCAGTGCTACCTTGTGTT 60.543 52.381 19.77 0.00 39.88 3.32
421 452 1.532868 GAGCAGTGCTACCTTGTGTTG 59.467 52.381 19.77 0.00 39.88 3.33
422 453 1.134098 AGCAGTGCTACCTTGTGTTGT 60.134 47.619 18.11 0.00 36.99 3.32
423 454 1.264288 GCAGTGCTACCTTGTGTTGTC 59.736 52.381 8.18 0.00 0.00 3.18
424 455 1.526887 CAGTGCTACCTTGTGTTGTCG 59.473 52.381 0.00 0.00 0.00 4.35
425 456 0.865769 GTGCTACCTTGTGTTGTCGG 59.134 55.000 0.00 0.00 0.00 4.79
426 457 0.882927 TGCTACCTTGTGTTGTCGGC 60.883 55.000 0.00 0.00 0.00 5.54
427 458 1.897398 GCTACCTTGTGTTGTCGGCG 61.897 60.000 0.00 0.00 0.00 6.46
428 459 0.319211 CTACCTTGTGTTGTCGGCGA 60.319 55.000 4.99 4.99 0.00 5.54
429 460 0.598158 TACCTTGTGTTGTCGGCGAC 60.598 55.000 31.68 31.68 0.00 5.19
430 461 1.594293 CCTTGTGTTGTCGGCGACT 60.594 57.895 36.17 0.00 33.15 4.18
431 462 1.564622 CTTGTGTTGTCGGCGACTG 59.435 57.895 36.17 15.82 33.15 3.51
432 463 1.831389 CTTGTGTTGTCGGCGACTGG 61.831 60.000 36.17 16.36 33.15 4.00
433 464 3.712881 GTGTTGTCGGCGACTGGC 61.713 66.667 36.17 25.72 42.51 4.85
434 465 3.923864 TGTTGTCGGCGACTGGCT 61.924 61.111 36.17 0.00 42.94 4.75
435 466 2.665185 GTTGTCGGCGACTGGCTT 60.665 61.111 36.17 0.00 42.94 4.35
436 467 2.664851 TTGTCGGCGACTGGCTTG 60.665 61.111 36.17 0.00 42.94 4.01
437 468 3.158537 TTGTCGGCGACTGGCTTGA 62.159 57.895 36.17 15.25 42.94 3.02
438 469 2.811317 GTCGGCGACTGGCTTGAG 60.811 66.667 31.15 0.00 42.94 3.02
439 470 4.742201 TCGGCGACTGGCTTGAGC 62.742 66.667 4.99 0.00 42.94 4.26
443 474 3.114616 CGACTGGCTTGAGCGGTG 61.115 66.667 0.00 0.00 43.26 4.94
478 1043 0.246635 TAGGCGCACCAGAGAAGAAC 59.753 55.000 10.83 0.00 39.06 3.01
494 1059 3.544503 AACATGCTGGGGTTGGGGG 62.545 63.158 0.00 0.00 0.00 5.40
511 1076 1.529796 GGACCCCATATTCCGTGCA 59.470 57.895 0.00 0.00 0.00 4.57
512 1077 0.106918 GGACCCCATATTCCGTGCAA 60.107 55.000 0.00 0.00 0.00 4.08
513 1078 1.308998 GACCCCATATTCCGTGCAAG 58.691 55.000 0.00 0.00 0.00 4.01
514 1079 0.623723 ACCCCATATTCCGTGCAAGT 59.376 50.000 0.00 0.00 0.00 3.16
515 1080 1.308998 CCCCATATTCCGTGCAAGTC 58.691 55.000 0.00 0.00 0.00 3.01
516 1081 1.134098 CCCCATATTCCGTGCAAGTCT 60.134 52.381 0.00 0.00 0.00 3.24
535 1100 1.879380 CTTGCAAGTCCAATCCAACGA 59.121 47.619 18.65 0.00 0.00 3.85
538 1103 1.812571 GCAAGTCCAATCCAACGACAT 59.187 47.619 0.00 0.00 0.00 3.06
545 1110 2.213499 CAATCCAACGACATAGGAGGC 58.787 52.381 0.00 0.00 34.40 4.70
547 1112 0.824109 TCCAACGACATAGGAGGCAG 59.176 55.000 0.00 0.00 0.00 4.85
548 1113 0.537188 CCAACGACATAGGAGGCAGT 59.463 55.000 0.00 0.00 0.00 4.40
549 1114 1.754803 CCAACGACATAGGAGGCAGTA 59.245 52.381 0.00 0.00 0.00 2.74
550 1115 2.167693 CCAACGACATAGGAGGCAGTAA 59.832 50.000 0.00 0.00 0.00 2.24
553 1118 2.224066 ACGACATAGGAGGCAGTAATGC 60.224 50.000 6.61 6.61 0.00 3.56
554 1119 2.036475 CGACATAGGAGGCAGTAATGCT 59.964 50.000 15.61 0.73 34.73 3.79
555 1120 3.255888 CGACATAGGAGGCAGTAATGCTA 59.744 47.826 15.61 0.00 34.73 3.49
556 1121 4.561105 GACATAGGAGGCAGTAATGCTAC 58.439 47.826 15.61 9.08 34.73 3.58
557 1122 3.967326 ACATAGGAGGCAGTAATGCTACA 59.033 43.478 15.61 0.00 34.73 2.74
558 1123 2.990066 AGGAGGCAGTAATGCTACAC 57.010 50.000 15.61 3.57 34.73 2.90
560 1125 1.134788 GGAGGCAGTAATGCTACACGT 60.135 52.381 15.61 0.00 34.73 4.49
563 1128 4.178540 GAGGCAGTAATGCTACACGTAAA 58.821 43.478 15.61 0.00 34.73 2.01
564 1129 4.571919 AGGCAGTAATGCTACACGTAAAA 58.428 39.130 15.61 0.00 34.73 1.52
566 1131 4.152759 GGCAGTAATGCTACACGTAAAACA 59.847 41.667 15.61 0.00 34.73 2.83
567 1132 5.334260 GGCAGTAATGCTACACGTAAAACAA 60.334 40.000 15.61 0.00 34.73 2.83
568 1133 6.311723 GCAGTAATGCTACACGTAAAACAAT 58.688 36.000 8.13 0.00 0.00 2.71
569 1134 6.799925 GCAGTAATGCTACACGTAAAACAATT 59.200 34.615 8.13 0.00 0.00 2.32
570 1135 7.325097 GCAGTAATGCTACACGTAAAACAATTT 59.675 33.333 8.13 0.00 0.00 1.82
571 1136 9.814507 CAGTAATGCTACACGTAAAACAATTTA 57.185 29.630 0.00 0.00 0.00 1.40
575 1140 9.997482 AATGCTACACGTAAAACAATTTATAGG 57.003 29.630 0.00 0.00 33.76 2.57
576 1141 8.550710 TGCTACACGTAAAACAATTTATAGGT 57.449 30.769 0.00 0.00 33.76 3.08
577 1142 9.001542 TGCTACACGTAAAACAATTTATAGGTT 57.998 29.630 0.00 0.00 33.76 3.50
578 1143 9.830294 GCTACACGTAAAACAATTTATAGGTTT 57.170 29.630 0.00 0.00 36.37 3.27
606 1171 8.820831 ACATATTGGGTTAATTTGATTGGTCAA 58.179 29.630 0.00 0.00 42.41 3.18
607 1172 9.835389 CATATTGGGTTAATTTGATTGGTCAAT 57.165 29.630 0.00 0.00 43.49 2.57
611 1176 6.043706 TGGGTTAATTTGATTGGTCAATTGGT 59.956 34.615 5.42 0.00 43.49 3.67
612 1177 6.371271 GGGTTAATTTGATTGGTCAATTGGTG 59.629 38.462 5.42 0.00 43.49 4.17
613 1178 7.158021 GGTTAATTTGATTGGTCAATTGGTGA 58.842 34.615 5.42 0.00 43.49 4.02
617 1182 2.378208 TGATTGGTCAATTGGTGAGGGA 59.622 45.455 5.42 0.00 36.74 4.20
618 1183 2.584835 TTGGTCAATTGGTGAGGGAG 57.415 50.000 5.42 0.00 36.74 4.30
619 1184 0.698238 TGGTCAATTGGTGAGGGAGG 59.302 55.000 5.42 0.00 36.74 4.30
620 1185 0.681243 GGTCAATTGGTGAGGGAGGC 60.681 60.000 5.42 0.00 36.74 4.70
622 1187 1.750399 CAATTGGTGAGGGAGGCGG 60.750 63.158 0.00 0.00 0.00 6.13
623 1188 3.645268 AATTGGTGAGGGAGGCGGC 62.645 63.158 0.00 0.00 0.00 6.53
637 1202 4.278513 CGGCCCACCCACCTGAAA 62.279 66.667 0.00 0.00 0.00 2.69
638 1203 2.200092 GGCCCACCCACCTGAAAA 59.800 61.111 0.00 0.00 0.00 2.29
639 1204 1.229177 GGCCCACCCACCTGAAAAT 60.229 57.895 0.00 0.00 0.00 1.82
640 1205 1.257750 GGCCCACCCACCTGAAAATC 61.258 60.000 0.00 0.00 0.00 2.17
641 1206 0.541764 GCCCACCCACCTGAAAATCA 60.542 55.000 0.00 0.00 0.00 2.57
663 1228 3.683885 GGGGGAGGGGTAAAGTTTG 57.316 57.895 0.00 0.00 0.00 2.93
664 1229 0.781920 GGGGGAGGGGTAAAGTTTGT 59.218 55.000 0.00 0.00 0.00 2.83
666 1231 1.426215 GGGGAGGGGTAAAGTTTGTGA 59.574 52.381 0.00 0.00 0.00 3.58
669 1234 3.509967 GGGAGGGGTAAAGTTTGTGATTG 59.490 47.826 0.00 0.00 0.00 2.67
670 1235 3.509967 GGAGGGGTAAAGTTTGTGATTGG 59.490 47.826 0.00 0.00 0.00 3.16
671 1236 4.149598 GAGGGGTAAAGTTTGTGATTGGT 58.850 43.478 0.00 0.00 0.00 3.67
672 1237 4.552674 AGGGGTAAAGTTTGTGATTGGTT 58.447 39.130 0.00 0.00 0.00 3.67
673 1238 4.343814 AGGGGTAAAGTTTGTGATTGGTTG 59.656 41.667 0.00 0.00 0.00 3.77
676 1241 6.183360 GGGGTAAAGTTTGTGATTGGTTGTTA 60.183 38.462 0.00 0.00 0.00 2.41
677 1242 6.921307 GGGTAAAGTTTGTGATTGGTTGTTAG 59.079 38.462 0.00 0.00 0.00 2.34
678 1243 7.201839 GGGTAAAGTTTGTGATTGGTTGTTAGA 60.202 37.037 0.00 0.00 0.00 2.10
679 1244 8.357402 GGTAAAGTTTGTGATTGGTTGTTAGAT 58.643 33.333 0.00 0.00 0.00 1.98
680 1245 9.180678 GTAAAGTTTGTGATTGGTTGTTAGATG 57.819 33.333 0.00 0.00 0.00 2.90
681 1246 6.959639 AGTTTGTGATTGGTTGTTAGATGT 57.040 33.333 0.00 0.00 0.00 3.06
684 1249 8.908903 AGTTTGTGATTGGTTGTTAGATGTAAA 58.091 29.630 0.00 0.00 0.00 2.01
686 1251 8.684386 TTGTGATTGGTTGTTAGATGTAAAGA 57.316 30.769 0.00 0.00 0.00 2.52
687 1252 8.322906 TGTGATTGGTTGTTAGATGTAAAGAG 57.677 34.615 0.00 0.00 0.00 2.85
688 1253 7.094805 TGTGATTGGTTGTTAGATGTAAAGAGC 60.095 37.037 0.00 0.00 0.00 4.09
689 1254 6.374333 TGATTGGTTGTTAGATGTAAAGAGCC 59.626 38.462 0.00 0.00 0.00 4.70
690 1255 4.585879 TGGTTGTTAGATGTAAAGAGCCC 58.414 43.478 0.00 0.00 0.00 5.19
691 1256 3.621715 GGTTGTTAGATGTAAAGAGCCCG 59.378 47.826 0.00 0.00 0.00 6.13
692 1257 4.251268 GTTGTTAGATGTAAAGAGCCCGT 58.749 43.478 0.00 0.00 0.00 5.28
693 1258 5.413499 GTTGTTAGATGTAAAGAGCCCGTA 58.587 41.667 0.00 0.00 0.00 4.02
694 1259 5.664294 TGTTAGATGTAAAGAGCCCGTAA 57.336 39.130 0.00 0.00 0.00 3.18
696 1261 6.465948 TGTTAGATGTAAAGAGCCCGTAAAA 58.534 36.000 0.00 0.00 0.00 1.52
697 1262 7.107542 TGTTAGATGTAAAGAGCCCGTAAAAT 58.892 34.615 0.00 0.00 0.00 1.82
698 1263 7.279313 TGTTAGATGTAAAGAGCCCGTAAAATC 59.721 37.037 0.00 0.00 0.00 2.17
699 1264 5.990668 AGATGTAAAGAGCCCGTAAAATCT 58.009 37.500 0.00 0.00 0.00 2.40
700 1265 6.415573 AGATGTAAAGAGCCCGTAAAATCTT 58.584 36.000 0.00 0.00 33.51 2.40
701 1266 5.873179 TGTAAAGAGCCCGTAAAATCTTG 57.127 39.130 0.00 0.00 32.50 3.02
703 1268 6.465948 TGTAAAGAGCCCGTAAAATCTTGTA 58.534 36.000 0.00 0.00 32.50 2.41
704 1269 6.935771 TGTAAAGAGCCCGTAAAATCTTGTAA 59.064 34.615 0.00 0.00 32.50 2.41
705 1270 7.608761 TGTAAAGAGCCCGTAAAATCTTGTAAT 59.391 33.333 0.00 0.00 32.50 1.89
706 1271 7.462571 AAAGAGCCCGTAAAATCTTGTAATT 57.537 32.000 0.00 0.00 32.50 1.40
707 1272 6.436843 AGAGCCCGTAAAATCTTGTAATTG 57.563 37.500 0.00 0.00 0.00 2.32
708 1273 5.944007 AGAGCCCGTAAAATCTTGTAATTGT 59.056 36.000 0.00 0.00 0.00 2.71
710 1275 6.988522 AGCCCGTAAAATCTTGTAATTGTTT 58.011 32.000 0.00 0.00 0.00 2.83
711 1276 6.866248 AGCCCGTAAAATCTTGTAATTGTTTG 59.134 34.615 0.00 0.00 0.00 2.93
713 1278 7.808856 GCCCGTAAAATCTTGTAATTGTTTGTA 59.191 33.333 0.00 0.00 0.00 2.41
714 1279 9.849166 CCCGTAAAATCTTGTAATTGTTTGTAT 57.151 29.630 0.00 0.00 0.00 2.29
722 1287 8.840833 TCTTGTAATTGTTTGTATGTCTAGCA 57.159 30.769 0.00 0.00 0.00 3.49
723 1288 9.448438 TCTTGTAATTGTTTGTATGTCTAGCAT 57.552 29.630 5.25 5.25 41.42 3.79
729 1294 7.636259 TTGTTTGTATGTCTAGCATTTTTGC 57.364 32.000 5.22 0.00 38.94 3.68
730 1295 6.743110 TGTTTGTATGTCTAGCATTTTTGCA 58.257 32.000 5.22 0.00 38.94 4.08
731 1296 7.377398 TGTTTGTATGTCTAGCATTTTTGCAT 58.623 30.769 5.22 0.00 38.94 3.96
745 3956 1.367346 TTGCATAGGAGGTGACCCAA 58.633 50.000 0.00 0.00 0.00 4.12
750 3961 3.769300 GCATAGGAGGTGACCCAAAAATT 59.231 43.478 0.00 0.00 0.00 1.82
751 3962 4.381932 GCATAGGAGGTGACCCAAAAATTG 60.382 45.833 0.00 0.00 0.00 2.32
752 3963 1.970640 AGGAGGTGACCCAAAAATTGC 59.029 47.619 0.00 0.00 0.00 3.56
753 3964 1.970640 GGAGGTGACCCAAAAATTGCT 59.029 47.619 0.00 0.00 0.00 3.91
754 3965 3.161866 GGAGGTGACCCAAAAATTGCTA 58.838 45.455 0.00 0.00 0.00 3.49
755 3966 3.769300 GGAGGTGACCCAAAAATTGCTAT 59.231 43.478 0.00 0.00 0.00 2.97
756 3967 4.953579 GGAGGTGACCCAAAAATTGCTATA 59.046 41.667 0.00 0.00 0.00 1.31
758 3969 5.826643 AGGTGACCCAAAAATTGCTATAGA 58.173 37.500 3.21 0.00 0.00 1.98
759 3970 5.888161 AGGTGACCCAAAAATTGCTATAGAG 59.112 40.000 3.21 0.00 0.00 2.43
760 3971 5.652452 GGTGACCCAAAAATTGCTATAGAGT 59.348 40.000 3.21 0.00 0.00 3.24
761 3972 6.826741 GGTGACCCAAAAATTGCTATAGAGTA 59.173 38.462 3.21 0.00 0.00 2.59
762 3973 7.502561 GGTGACCCAAAAATTGCTATAGAGTAT 59.497 37.037 3.21 0.00 0.00 2.12
763 3974 9.555727 GTGACCCAAAAATTGCTATAGAGTATA 57.444 33.333 3.21 0.00 0.00 1.47
764 3975 9.778741 TGACCCAAAAATTGCTATAGAGTATAG 57.221 33.333 3.21 0.00 40.83 1.31
765 3976 9.998106 GACCCAAAAATTGCTATAGAGTATAGA 57.002 33.333 3.21 0.00 40.43 1.98
766 3977 9.780186 ACCCAAAAATTGCTATAGAGTATAGAC 57.220 33.333 3.21 0.00 40.43 2.59
767 3978 9.778741 CCCAAAAATTGCTATAGAGTATAGACA 57.221 33.333 3.21 1.19 40.43 3.41
788 3999 7.668492 AGACATAAGGATAGTTACGGGAATTC 58.332 38.462 0.00 0.00 0.00 2.17
806 4017 0.256752 TCTACGGAATCCCCTCGTGA 59.743 55.000 0.00 0.00 38.19 4.35
807 4018 0.384669 CTACGGAATCCCCTCGTGAC 59.615 60.000 0.00 0.00 38.19 3.67
808 4019 0.323633 TACGGAATCCCCTCGTGACA 60.324 55.000 0.00 0.00 38.19 3.58
809 4020 1.153628 CGGAATCCCCTCGTGACAC 60.154 63.158 0.00 0.00 0.00 3.67
811 4022 1.265454 GGAATCCCCTCGTGACACCT 61.265 60.000 0.00 0.00 0.00 4.00
812 4023 0.108138 GAATCCCCTCGTGACACCTG 60.108 60.000 0.00 0.00 0.00 4.00
817 4035 1.532604 CCCTCGTGACACCTGTGCTA 61.533 60.000 0.00 0.00 0.00 3.49
830 4048 4.157656 CACCTGTGCTAGCCTATCTATCTC 59.842 50.000 13.29 0.00 0.00 2.75
839 4057 9.800572 TGCTAGCCTATCTATCTCGATTATTAT 57.199 33.333 13.29 0.00 0.00 1.28
885 4103 0.749454 ATTCGCTTGCTGTCATCCCC 60.749 55.000 0.00 0.00 0.00 4.81
891 4109 0.327924 TTGCTGTCATCCCCATCGTT 59.672 50.000 0.00 0.00 0.00 3.85
903 4121 2.383855 CCCATCGTTTCCTCTCTCTCT 58.616 52.381 0.00 0.00 0.00 3.10
904 4122 2.360801 CCCATCGTTTCCTCTCTCTCTC 59.639 54.545 0.00 0.00 0.00 3.20
905 4123 3.287222 CCATCGTTTCCTCTCTCTCTCT 58.713 50.000 0.00 0.00 0.00 3.10
906 4124 3.315191 CCATCGTTTCCTCTCTCTCTCTC 59.685 52.174 0.00 0.00 0.00 3.20
907 4125 3.992943 TCGTTTCCTCTCTCTCTCTCT 57.007 47.619 0.00 0.00 0.00 3.10
917 4135 3.843619 TCTCTCTCTCTCTGTCCTCTCAA 59.156 47.826 0.00 0.00 0.00 3.02
1153 4376 2.496470 GGTACATTCGTCTCCTTGACCT 59.504 50.000 0.00 0.00 42.49 3.85
1174 4397 4.275936 CCTTTTAGCCAACCATATTCTCCG 59.724 45.833 0.00 0.00 0.00 4.63
1227 4450 3.802685 AGCTGTGACAGTAAAACGACTTC 59.197 43.478 14.82 0.00 33.43 3.01
1233 4456 5.175308 GTGACAGTAAAACGACTTCTCCTTC 59.825 44.000 0.00 0.00 0.00 3.46
1234 4457 4.629092 ACAGTAAAACGACTTCTCCTTCC 58.371 43.478 0.00 0.00 0.00 3.46
1236 4459 2.563261 AAAACGACTTCTCCTTCCCC 57.437 50.000 0.00 0.00 0.00 4.81
1276 4499 5.420725 TGGTACATCAATAGTCAGCTTGT 57.579 39.130 0.00 0.00 0.00 3.16
1377 4610 5.008331 CAGTTATCTACAGTAGCGGGGATA 58.992 45.833 2.26 0.00 0.00 2.59
1385 4618 4.957296 ACAGTAGCGGGGATATTTACTTG 58.043 43.478 0.00 0.00 0.00 3.16
1426 4660 6.294731 GCCATACTCAAGAAAAGATGGTTTGT 60.295 38.462 0.00 0.00 36.91 2.83
1427 4661 7.661040 CCATACTCAAGAAAAGATGGTTTGTT 58.339 34.615 0.00 0.00 31.15 2.83
1428 4662 8.143835 CCATACTCAAGAAAAGATGGTTTGTTT 58.856 33.333 0.00 0.00 31.15 2.83
1429 4663 8.971321 CATACTCAAGAAAAGATGGTTTGTTTG 58.029 33.333 0.00 0.00 0.00 2.93
1431 4665 7.610865 ACTCAAGAAAAGATGGTTTGTTTGAA 58.389 30.769 0.00 0.00 0.00 2.69
1432 4666 7.545615 ACTCAAGAAAAGATGGTTTGTTTGAAC 59.454 33.333 0.00 0.00 0.00 3.18
1493 4727 0.791610 GTAAAACGACCGCAATGCCG 60.792 55.000 0.00 0.00 0.00 5.69
1544 4778 6.819146 GCATAGGCTACTAGTTTCAGAGTTTT 59.181 38.462 0.00 0.00 36.96 2.43
1548 4782 5.118817 GGCTACTAGTTTCAGAGTTTTGTCG 59.881 44.000 0.00 0.00 0.00 4.35
1885 5407 2.480759 GCAATGTGCAATCCCATCAGTC 60.481 50.000 0.00 0.00 44.26 3.51
1892 5414 2.683152 GCAATCCCATCAGTCTCTTGCT 60.683 50.000 0.00 0.00 35.75 3.91
1898 5420 3.269178 CCATCAGTCTCTTGCTTTCTCC 58.731 50.000 0.00 0.00 0.00 3.71
1917 5439 6.037786 TCTCCTTATCTACATATTTGGCCG 57.962 41.667 0.00 0.00 0.00 6.13
1982 5504 2.579207 TACTATCAGTGTCGCTTGGC 57.421 50.000 0.00 0.00 0.00 4.52
2014 5536 2.599082 GGCTTTGATTCTCGAGTACACG 59.401 50.000 13.13 6.34 0.00 4.49
2017 5539 4.205385 GCTTTGATTCTCGAGTACACGATC 59.795 45.833 15.72 11.13 41.39 3.69
2088 5610 4.761227 CCCTACTAACCTCTCTTCCGATAC 59.239 50.000 0.00 0.00 0.00 2.24
2109 5635 2.846550 CGTGCGCTATAATCAGATACCG 59.153 50.000 9.73 0.00 0.00 4.02
2238 5764 4.446371 CCATTCTTGTCCTCATAGTCACC 58.554 47.826 0.00 0.00 0.00 4.02
2247 5773 3.704566 TCCTCATAGTCACCGCATTACTT 59.295 43.478 0.00 0.00 0.00 2.24
2300 5826 5.957842 TTCCATAACTGCACTTAGTTTGG 57.042 39.130 0.00 0.00 41.01 3.28
2316 5842 1.865788 TTGGAGCGCATGAAACTGGC 61.866 55.000 11.47 0.00 0.00 4.85
2349 5875 9.234384 CGACTTATTAAAGTACGAATGATGTCT 57.766 33.333 0.00 0.00 46.09 3.41
2469 5995 2.684927 GCTGGCCTGGTTATGATGTTCT 60.685 50.000 12.06 0.00 0.00 3.01
2481 6007 7.175990 TGGTTATGATGTTCTGAAAGGGTAAAC 59.824 37.037 0.00 0.00 0.00 2.01
2547 6073 3.160269 GGGCATGGCTCTAATATTTGCT 58.840 45.455 19.78 0.00 0.00 3.91
2551 6077 5.452356 GGCATGGCTCTAATATTTGCTTGTT 60.452 40.000 12.86 0.00 0.00 2.83
2627 6153 4.082125 CCCTCTTCTTTGCTTACATTGGT 58.918 43.478 0.00 0.00 0.00 3.67
2682 6208 2.288395 GGCCTTTGTTCTGTCACCATTG 60.288 50.000 0.00 0.00 0.00 2.82
2683 6209 2.622942 GCCTTTGTTCTGTCACCATTGA 59.377 45.455 0.00 0.00 0.00 2.57
2684 6210 3.068024 GCCTTTGTTCTGTCACCATTGAA 59.932 43.478 0.00 0.00 31.90 2.69
2717 6243 5.220970 CGTGTTCCTTTGTGGTGTAAATTCT 60.221 40.000 0.00 0.00 37.07 2.40
2720 6246 6.262273 TGTTCCTTTGTGGTGTAAATTCTCTC 59.738 38.462 0.00 0.00 37.07 3.20
2765 6291 7.713507 AGTGAACACTACTTTTAATGTGCAGTA 59.286 33.333 5.62 0.00 40.43 2.74
2818 6344 6.271159 ACTTTCTAGGTGAAGAATCCTCAACT 59.729 38.462 4.68 4.68 35.48 3.16
2847 6373 1.550072 CATGGGGAATGTGTTTGACCC 59.450 52.381 0.00 0.00 39.79 4.46
2870 6396 3.054875 TGTCATTGTGCTGCTTCCTCTAT 60.055 43.478 0.00 0.00 0.00 1.98
2884 6410 5.411053 GCTTCCTCTATATGATGGTTTCTGC 59.589 44.000 0.00 0.00 0.00 4.26
2910 6436 1.783071 TGTCGGTCTGGTGCCATATA 58.217 50.000 0.00 0.00 0.00 0.86
3022 6548 2.831685 TGACATGGCTGTTAAGACGT 57.168 45.000 0.00 0.00 35.14 4.34
3023 6549 3.120321 TGACATGGCTGTTAAGACGTT 57.880 42.857 0.00 0.00 35.14 3.99
3070 6596 3.801050 CAGTTCTGAGCATTACTCCATCG 59.199 47.826 0.00 0.00 45.61 3.84
3114 6640 2.025321 GGTATGTCATTTCCAGTGGGGT 60.025 50.000 9.92 0.00 38.11 4.95
3172 6698 5.934402 TTCTCCCTCAGGTACATAAGAAC 57.066 43.478 0.00 0.00 0.00 3.01
3206 6732 1.929169 CATCAGTATATGCCATCGCCG 59.071 52.381 0.00 0.00 0.00 6.46
3213 6739 0.107897 TATGCCATCGCCGTTTCAGT 60.108 50.000 0.00 0.00 0.00 3.41
3224 6750 1.608283 CCGTTTCAGTCACCTTCTCCC 60.608 57.143 0.00 0.00 0.00 4.30
3378 6905 2.037901 TGCAAATTCAGCAGGAACCAA 58.962 42.857 1.74 0.00 38.60 3.67
3390 6917 4.762251 AGCAGGAACCAAAACTGATTAGTC 59.238 41.667 0.00 0.00 35.69 2.59
3451 6978 2.492012 GCTATGGCAAGAGATGGACTG 58.508 52.381 0.00 0.00 38.54 3.51
3530 7057 5.130975 ACAATTCTGACTGGGATATGTGCTA 59.869 40.000 0.00 0.00 0.00 3.49
3568 7095 1.992538 TGGATGTGTCACAATTGGCA 58.007 45.000 10.28 3.05 33.92 4.92
3594 7121 5.415701 GGATGGTAATATGTTACTGGCCATG 59.584 44.000 5.51 2.78 40.06 3.66
3604 7131 5.571285 TGTTACTGGCCATGTAAAATGGTA 58.429 37.500 21.75 9.66 41.17 3.25
3645 7173 9.214962 AGAGCTACTCCAGGTAATAACTATTTT 57.785 33.333 0.00 0.00 34.30 1.82
3771 7299 0.179000 AGGCGTTGATCCATCCTCAC 59.821 55.000 0.00 0.00 0.00 3.51
3772 7300 0.815615 GGCGTTGATCCATCCTCACC 60.816 60.000 0.00 0.00 0.00 4.02
3791 7319 6.299805 TCACCTGAATCACTAGCTTTACAT 57.700 37.500 0.00 0.00 0.00 2.29
3792 7320 7.417911 CCTCACCTGAATCACTAGCTTTACATA 60.418 40.741 0.00 0.00 0.00 2.29
3823 7351 3.118112 TCAGAGGCAGATGAGGGAATTTC 60.118 47.826 0.00 0.00 0.00 2.17
3910 7438 9.028284 ACTATCACCTGTTGATTTGATTCAAAT 57.972 29.630 21.57 21.57 42.87 2.32
3985 7518 4.761739 CACCCAACTGAATGTTCTACATGT 59.238 41.667 2.69 2.69 37.97 3.21
3988 7521 6.013725 ACCCAACTGAATGTTCTACATGTCTA 60.014 38.462 0.00 0.00 37.97 2.59
4012 7545 1.111277 AGGTTCAGTTTGTGGTTGCC 58.889 50.000 0.00 0.00 0.00 4.52
4016 7549 0.736053 TCAGTTTGTGGTTGCCGAAC 59.264 50.000 0.00 0.00 0.00 3.95
4031 7564 1.415374 CGAACACCTGAACTGTACCG 58.585 55.000 0.00 0.00 0.00 4.02
4039 7572 2.061773 CTGAACTGTACCGTGCTGAAG 58.938 52.381 0.00 0.00 0.00 3.02
4043 7576 3.955650 ACTGTACCGTGCTGAAGTTAT 57.044 42.857 0.58 0.00 0.00 1.89
4044 7577 5.047872 TGAACTGTACCGTGCTGAAGTTATA 60.048 40.000 0.00 0.00 0.00 0.98
4045 7578 5.395682 ACTGTACCGTGCTGAAGTTATAA 57.604 39.130 0.58 0.00 0.00 0.98
4046 7579 5.166398 ACTGTACCGTGCTGAAGTTATAAC 58.834 41.667 7.57 7.57 0.00 1.89
4093 7626 9.875691 AAATAGTCATTTAAGCAGGGAAATTTC 57.124 29.630 9.83 9.83 32.46 2.17
4106 7639 4.081697 AGGGAAATTTCGTTAGCCAAATGG 60.082 41.667 11.95 0.00 38.53 3.16
4118 7651 7.825270 TCGTTAGCCAAATGGTAAATAGAGAAA 59.175 33.333 0.71 0.00 38.57 2.52
4187 7720 1.961394 CAGCCTTAGCCATCATGCATT 59.039 47.619 0.00 0.00 41.25 3.56
4188 7721 2.030185 CAGCCTTAGCCATCATGCATTC 60.030 50.000 0.00 0.00 41.25 2.67
4252 7785 2.028020 CGAGCTAAAACTGACTCCCCTT 60.028 50.000 0.00 0.00 0.00 3.95
4265 7798 4.282703 TGACTCCCCTTCAGTACTGTTTAC 59.717 45.833 21.99 6.62 0.00 2.01
4274 7807 7.225341 CCCTTCAGTACTGTTTACTTTTACGTT 59.775 37.037 21.99 0.00 0.00 3.99
4317 7850 4.199310 TCCTTGCAAGATATGTTACCTGC 58.801 43.478 28.05 0.00 0.00 4.85
4353 7886 6.233434 AGTTCATCACTTTCAAGCTACATCA 58.767 36.000 0.00 0.00 27.32 3.07
4357 7890 6.656270 TCATCACTTTCAAGCTACATCATGTT 59.344 34.615 0.00 0.00 0.00 2.71
4358 7891 7.823799 TCATCACTTTCAAGCTACATCATGTTA 59.176 33.333 0.00 0.00 0.00 2.41
4368 7901 4.041691 GCTACATCATGTTACACCCCCTAT 59.958 45.833 0.00 0.00 0.00 2.57
4372 7905 5.163195 ACATCATGTTACACCCCCTATCTTC 60.163 44.000 0.00 0.00 0.00 2.87
4380 7913 2.785857 CACCCCCTATCTTCCCTTTCAT 59.214 50.000 0.00 0.00 0.00 2.57
4388 7921 7.237679 CCCCTATCTTCCCTTTCATGATTACTA 59.762 40.741 0.00 0.00 0.00 1.82
4463 7996 7.321640 ATCAGTTGATGAAGCACCTACTGCT 62.322 44.000 0.00 0.00 45.41 4.24
4503 8036 4.023536 TGGTAAGGCGACAAAAAGCTAAAG 60.024 41.667 0.00 0.00 0.00 1.85
4537 8070 1.000843 GGTTTGCTTTGGGGTCATCAC 59.999 52.381 0.00 0.00 0.00 3.06
4546 8079 0.251341 GGGGTCATCACCTTTGTGCT 60.251 55.000 0.00 0.00 43.22 4.40
4636 8169 5.868258 CCAAGTATTTTATGTGTGCAATGCA 59.132 36.000 2.72 2.72 35.60 3.96
4774 8307 9.578576 AAATAATATCAGCCTATTCAGAAGCAA 57.421 29.630 0.00 0.00 0.00 3.91
4775 8308 6.874288 AATATCAGCCTATTCAGAAGCAAC 57.126 37.500 0.00 0.00 0.00 4.17
4865 8398 0.670546 TTGCTCTTGCTCGGTGCTAC 60.671 55.000 3.53 0.00 43.37 3.58
4895 8428 2.470983 TCATGCATCGGACAAGACAA 57.529 45.000 0.00 0.00 0.00 3.18
4925 8458 2.805671 CACGACAAACTGAAGGTGCATA 59.194 45.455 0.00 0.00 0.00 3.14
4963 8496 9.593134 GTGGATATTATTTTTGTGCCACATTTA 57.407 29.630 0.00 0.00 42.96 1.40
4964 8497 9.593134 TGGATATTATTTTTGTGCCACATTTAC 57.407 29.630 0.00 0.00 0.00 2.01
4965 8498 9.816354 GGATATTATTTTTGTGCCACATTTACT 57.184 29.630 0.00 0.00 0.00 2.24
4967 8500 7.810766 ATTATTTTTGTGCCACATTTACTCG 57.189 32.000 0.00 0.00 0.00 4.18
4968 8501 4.902443 TTTTTGTGCCACATTTACTCGA 57.098 36.364 0.00 0.00 0.00 4.04
4970 8503 5.446143 TTTTGTGCCACATTTACTCGAAT 57.554 34.783 0.00 0.00 0.00 3.34
4973 8506 4.793071 TGTGCCACATTTACTCGAATTTG 58.207 39.130 0.00 0.00 0.00 2.32
4986 8520 4.455877 ACTCGAATTTGGACAACCTGATTC 59.544 41.667 0.00 0.00 36.17 2.52
5018 8552 6.705863 AAAGAAAGCTCAGATTGTCTTGTT 57.294 33.333 0.00 0.00 0.00 2.83
5021 8555 4.825546 AAGCTCAGATTGTCTTGTTGTG 57.174 40.909 0.00 0.00 0.00 3.33
5060 8594 3.494749 CCCGTTTGTACCTGTACTTCCAA 60.495 47.826 8.75 0.00 37.00 3.53
5082 8616 0.036105 TGCTGCATCCTCATCAACGT 60.036 50.000 0.00 0.00 0.00 3.99
5101 8635 5.069501 ACGTGTACCTTCTAATGAACCTC 57.930 43.478 0.00 0.00 0.00 3.85
5124 8658 4.795278 CGGGTAAGTAACTTAGCTTGTACG 59.205 45.833 0.00 0.00 42.10 3.67
5189 8724 3.440522 GGGTGTTGCATTCTTACCTCTTC 59.559 47.826 0.00 0.00 0.00 2.87
5198 8733 5.277828 GCATTCTTACCTCTTCGTTGTTGTT 60.278 40.000 0.00 0.00 0.00 2.83
5199 8734 5.728351 TTCTTACCTCTTCGTTGTTGTTG 57.272 39.130 0.00 0.00 0.00 3.33
5200 8735 3.558418 TCTTACCTCTTCGTTGTTGTTGC 59.442 43.478 0.00 0.00 0.00 4.17
5201 8736 2.038387 ACCTCTTCGTTGTTGTTGCT 57.962 45.000 0.00 0.00 0.00 3.91
5202 8737 1.670811 ACCTCTTCGTTGTTGTTGCTG 59.329 47.619 0.00 0.00 0.00 4.41
5203 8738 1.670811 CCTCTTCGTTGTTGTTGCTGT 59.329 47.619 0.00 0.00 0.00 4.40
5204 8739 2.097466 CCTCTTCGTTGTTGTTGCTGTT 59.903 45.455 0.00 0.00 0.00 3.16
5205 8740 3.100817 CTCTTCGTTGTTGTTGCTGTTG 58.899 45.455 0.00 0.00 0.00 3.33
5206 8741 2.486203 TCTTCGTTGTTGTTGCTGTTGT 59.514 40.909 0.00 0.00 0.00 3.32
5207 8742 2.999507 TCGTTGTTGTTGCTGTTGTT 57.000 40.000 0.00 0.00 0.00 2.83
5215 8750 5.473931 TGTTGTTGCTGTTGTTGTACATTT 58.526 33.333 0.00 0.00 0.00 2.32
5274 8809 4.631377 GCAAATTGAATTTCCTAACCTGGC 59.369 41.667 0.00 0.00 0.00 4.85
5279 8814 2.403252 ATTTCCTAACCTGGCTGTCG 57.597 50.000 0.00 0.00 0.00 4.35
5285 8820 1.816835 CTAACCTGGCTGTCGTGAGTA 59.183 52.381 0.00 0.00 0.00 2.59
5314 8849 4.880696 AGCAGCAACTTCTGAAGATAATCC 59.119 41.667 23.36 7.80 36.19 3.01
5328 8863 5.508200 AGATAATCCGTGTCTCACTCTTC 57.492 43.478 0.00 0.00 31.34 2.87
5380 8915 3.202906 TCCGTGTTTCTATATGGCTTGC 58.797 45.455 0.00 0.00 0.00 4.01
5408 8943 8.474025 GCTGGTGCACTAATATATCTCTTCTAT 58.526 37.037 17.98 0.00 39.41 1.98
5472 9007 0.321034 GTCACCTGCATGAGACAGCA 60.321 55.000 13.17 0.00 39.25 4.41
5495 9030 7.069950 AGCATGGGGGTATTCTTCTAATTTTTC 59.930 37.037 0.00 0.00 0.00 2.29
5616 9151 1.447314 GCCTTCAAAGCAGCATGGC 60.447 57.895 0.00 0.00 35.86 4.40
5740 9275 6.867662 AGCAGAAACATGTATACCAATAGC 57.132 37.500 0.00 0.00 0.00 2.97
5744 9279 6.260714 CAGAAACATGTATACCAATAGCAGCA 59.739 38.462 0.00 0.00 0.00 4.41
5747 9282 6.419484 ACATGTATACCAATAGCAGCACTA 57.581 37.500 0.00 0.00 34.64 2.74
5748 9283 6.223852 ACATGTATACCAATAGCAGCACTAC 58.776 40.000 0.00 0.00 32.32 2.73
5783 9318 7.655328 ACAATCAATCACTTTTTCGGCAATTTA 59.345 29.630 0.00 0.00 0.00 1.40
5793 9328 0.969894 CGGCAATTTAACCAACCCCA 59.030 50.000 0.00 0.00 0.00 4.96
5807 9343 2.581354 CCCAGGAGGCTCTGTTCG 59.419 66.667 15.23 0.00 33.14 3.95
5808 9344 1.984570 CCCAGGAGGCTCTGTTCGA 60.985 63.158 15.23 0.00 33.14 3.71
5859 9395 0.613012 ACTGCAATCCAGGGGAAAGC 60.613 55.000 5.63 5.63 46.14 3.51
5872 9408 2.644676 GGGAAAGCAAGTCATACCCTC 58.355 52.381 0.00 0.00 33.79 4.30
5884 9420 4.070009 GTCATACCCTCGTTCTTTGGTTT 58.930 43.478 0.00 0.00 32.27 3.27
5901 9437 7.891183 TCTTTGGTTTATAGGCTTGTATGGAAA 59.109 33.333 0.00 0.00 0.00 3.13
6085 9633 2.983592 CTGCAACCCCAACCCGAC 60.984 66.667 0.00 0.00 0.00 4.79
6123 9671 0.387239 GCGGCCAAAACACATGTCTC 60.387 55.000 2.24 0.00 0.00 3.36
6163 9711 1.549203 AACAGCCCACCATTGATGAC 58.451 50.000 0.00 0.00 0.00 3.06
6190 9738 3.211045 CCCTACCCAATATGTTGTTCGG 58.789 50.000 1.26 0.00 33.36 4.30
6195 9743 2.091541 CCAATATGTTGTTCGGGCTGT 58.908 47.619 1.26 0.00 33.36 4.40
6199 9747 0.110486 ATGTTGTTCGGGCTGTCCTT 59.890 50.000 0.00 0.00 0.00 3.36
6201 9749 1.141254 TGTTGTTCGGGCTGTCCTTTA 59.859 47.619 0.00 0.00 0.00 1.85
6222 9770 1.750018 TCAGCAACGCCATGGGATG 60.750 57.895 15.13 9.74 0.00 3.51
6243 9791 9.841295 GGGATGGAGTACATAACATAAAACTAA 57.159 33.333 0.00 0.00 40.72 2.24
6305 9853 8.637281 AAAACGACCTATTTTTGAAAATTCGT 57.363 26.923 15.90 15.90 44.51 3.85
6306 9854 7.847166 AACGACCTATTTTTGAAAATTCGTC 57.153 32.000 19.33 16.13 43.13 4.20
6307 9855 6.520449 CGACCTATTTTTGAAAATTCGTCG 57.480 37.500 22.10 22.10 43.65 5.12
6308 9856 6.073657 ACGACCTATTTTTGAAAATTCGTCGA 60.074 34.615 30.98 0.00 46.99 4.20
6309 9857 6.959311 CGACCTATTTTTGAAAATTCGTCGAT 59.041 34.615 26.21 6.81 46.99 3.59
6310 9858 8.111836 CGACCTATTTTTGAAAATTCGTCGATA 58.888 33.333 26.21 7.37 46.99 2.92
6311 9859 9.763465 GACCTATTTTTGAAAATTCGTCGATAA 57.237 29.630 6.98 0.00 39.24 1.75
6312 9860 9.550811 ACCTATTTTTGAAAATTCGTCGATAAC 57.449 29.630 6.98 0.00 39.24 1.89
6313 9861 9.006215 CCTATTTTTGAAAATTCGTCGATAACC 57.994 33.333 6.98 0.00 39.24 2.85
6314 9862 9.549509 CTATTTTTGAAAATTCGTCGATAACCA 57.450 29.630 6.98 0.00 39.24 3.67
6315 9863 7.611821 TTTTTGAAAATTCGTCGATAACCAC 57.388 32.000 0.00 0.00 0.00 4.16
6316 9864 4.932268 TGAAAATTCGTCGATAACCACC 57.068 40.909 0.00 0.00 0.00 4.61
6317 9865 4.316645 TGAAAATTCGTCGATAACCACCA 58.683 39.130 0.00 0.00 0.00 4.17
6318 9866 4.152759 TGAAAATTCGTCGATAACCACCAC 59.847 41.667 0.00 0.00 0.00 4.16
6319 9867 3.322211 AATTCGTCGATAACCACCACA 57.678 42.857 0.00 0.00 0.00 4.17
6320 9868 2.816204 TTCGTCGATAACCACCACAA 57.184 45.000 0.00 0.00 0.00 3.33
6321 9869 2.357327 TCGTCGATAACCACCACAAG 57.643 50.000 0.00 0.00 0.00 3.16
6322 9870 1.614903 TCGTCGATAACCACCACAAGT 59.385 47.619 0.00 0.00 0.00 3.16
6323 9871 2.036217 TCGTCGATAACCACCACAAGTT 59.964 45.455 0.00 0.00 0.00 2.66
6324 9872 2.803956 CGTCGATAACCACCACAAGTTT 59.196 45.455 0.00 0.00 0.00 2.66
6325 9873 3.363575 CGTCGATAACCACCACAAGTTTG 60.364 47.826 0.00 0.00 0.00 2.93
6326 9874 3.058501 GTCGATAACCACCACAAGTTTGG 60.059 47.826 0.00 3.42 43.04 3.28
6327 9875 3.142951 CGATAACCACCACAAGTTTGGA 58.857 45.455 10.03 0.00 39.24 3.53
6328 9876 3.756434 CGATAACCACCACAAGTTTGGAT 59.244 43.478 10.03 0.00 39.24 3.41
6329 9877 4.217550 CGATAACCACCACAAGTTTGGATT 59.782 41.667 10.03 5.35 39.24 3.01
6330 9878 5.278758 CGATAACCACCACAAGTTTGGATTT 60.279 40.000 10.03 4.23 39.24 2.17
6331 9879 4.400529 AACCACCACAAGTTTGGATTTC 57.599 40.909 10.03 0.00 39.24 2.17
6332 9880 2.360801 ACCACCACAAGTTTGGATTTCG 59.639 45.455 10.03 0.00 39.24 3.46
6333 9881 2.360801 CCACCACAAGTTTGGATTTCGT 59.639 45.455 10.03 0.00 39.24 3.85
6334 9882 3.181480 CCACCACAAGTTTGGATTTCGTT 60.181 43.478 10.03 0.00 39.24 3.85
6335 9883 4.429108 CACCACAAGTTTGGATTTCGTTT 58.571 39.130 10.03 0.00 39.24 3.60
6336 9884 4.502645 CACCACAAGTTTGGATTTCGTTTC 59.497 41.667 10.03 0.00 39.24 2.78
6337 9885 4.158764 ACCACAAGTTTGGATTTCGTTTCA 59.841 37.500 10.03 0.00 39.24 2.69
6338 9886 5.105752 CCACAAGTTTGGATTTCGTTTCAA 58.894 37.500 0.00 0.00 39.24 2.69
6339 9887 5.578727 CCACAAGTTTGGATTTCGTTTCAAA 59.421 36.000 0.00 0.00 39.24 2.69
6340 9888 6.091441 CCACAAGTTTGGATTTCGTTTCAAAA 59.909 34.615 0.00 0.00 39.24 2.44
6341 9889 7.360438 CCACAAGTTTGGATTTCGTTTCAAAAA 60.360 33.333 0.00 0.00 39.24 1.94
6393 9941 6.628644 ATCTAGTTTATGATAAGGAGGGCC 57.371 41.667 0.00 0.00 0.00 5.80
6394 9942 4.844655 TCTAGTTTATGATAAGGAGGGCCC 59.155 45.833 16.46 16.46 33.31 5.80
6395 9943 3.403322 AGTTTATGATAAGGAGGGCCCA 58.597 45.455 27.56 1.75 37.41 5.36
6396 9944 3.990245 AGTTTATGATAAGGAGGGCCCAT 59.010 43.478 27.56 8.17 37.41 4.00
6397 9945 4.043435 AGTTTATGATAAGGAGGGCCCATC 59.957 45.833 27.56 18.24 37.41 3.51
6398 9946 2.138535 ATGATAAGGAGGGCCCATCA 57.861 50.000 27.56 23.51 39.26 3.07
6399 9947 1.905839 TGATAAGGAGGGCCCATCAA 58.094 50.000 27.56 5.30 34.76 2.57
6400 9948 2.431997 TGATAAGGAGGGCCCATCAAT 58.568 47.619 27.56 10.63 34.76 2.57
6401 9949 2.108776 TGATAAGGAGGGCCCATCAATG 59.891 50.000 27.56 0.00 34.76 2.82
6430 9978 2.524569 TCAGCATGAGACAAACGACA 57.475 45.000 0.00 0.00 42.56 4.35
6431 9979 2.135139 TCAGCATGAGACAAACGACAC 58.865 47.619 0.00 0.00 42.56 3.67
6432 9980 1.136529 CAGCATGAGACAAACGACACG 60.137 52.381 0.00 0.00 39.69 4.49
6433 9981 0.163788 GCATGAGACAAACGACACGG 59.836 55.000 0.00 0.00 0.00 4.94
6434 9982 0.163788 CATGAGACAAACGACACGGC 59.836 55.000 0.00 0.00 0.00 5.68
6435 9983 0.949105 ATGAGACAAACGACACGGCC 60.949 55.000 0.00 0.00 0.00 6.13
6436 9984 2.654912 GAGACAAACGACACGGCCG 61.655 63.158 26.86 26.86 0.00 6.13
6437 9985 2.963320 GACAAACGACACGGCCGT 60.963 61.111 28.70 28.70 42.61 5.68
6441 9989 3.628958 AACGACACGGCCGTTAAC 58.371 55.556 32.11 20.94 46.73 2.01
6442 9990 1.227205 AACGACACGGCCGTTAACA 60.227 52.632 32.11 0.00 46.73 2.41
6443 9991 0.809241 AACGACACGGCCGTTAACAA 60.809 50.000 32.11 0.00 46.73 2.83
6444 9992 1.202320 CGACACGGCCGTTAACAAC 59.798 57.895 32.11 14.73 0.00 3.32
6454 10002 1.205820 GTTAACAACGGCTGGTCGC 59.794 57.895 0.00 0.00 38.13 5.19
6455 10003 2.311701 TTAACAACGGCTGGTCGCG 61.312 57.895 0.00 0.00 40.44 5.87
6456 10004 2.974935 TTAACAACGGCTGGTCGCGT 62.975 55.000 5.77 0.00 40.44 6.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 61 2.348888 ACCCGTGACCATCGTCTCC 61.349 63.158 0.00 0.00 39.94 3.71
149 151 1.278985 TGTCCATCGACTCCAGCATTT 59.721 47.619 0.00 0.00 39.94 2.32
171 173 0.532862 AGTTGTCGGTTCCAGCACTG 60.533 55.000 0.00 0.00 0.00 3.66
182 184 2.111043 AGCACCCACAGTTGTCGG 59.889 61.111 0.00 0.00 32.26 4.79
185 187 0.546122 TCTTCAGCACCCACAGTTGT 59.454 50.000 0.00 0.00 0.00 3.32
190 192 1.069090 GACGTCTTCAGCACCCACA 59.931 57.895 8.70 0.00 0.00 4.17
200 202 1.618861 CACTGGATGTCGACGTCTTC 58.381 55.000 31.06 19.11 32.61 2.87
242 255 1.228184 ACCGGTGTCTGTCGTCTCT 60.228 57.895 6.12 0.00 0.00 3.10
243 256 1.081376 CACCGGTGTCTGTCGTCTC 60.081 63.158 26.95 0.00 0.00 3.36
244 257 3.039988 CACCGGTGTCTGTCGTCT 58.960 61.111 26.95 0.00 0.00 4.18
245 258 2.733593 GCACCGGTGTCTGTCGTC 60.734 66.667 33.92 12.44 0.00 4.20
246 259 3.208884 GAGCACCGGTGTCTGTCGT 62.209 63.158 33.92 11.30 0.00 4.34
247 260 2.430921 GAGCACCGGTGTCTGTCG 60.431 66.667 33.92 9.05 0.00 4.35
248 261 0.531974 TTTGAGCACCGGTGTCTGTC 60.532 55.000 33.92 24.06 0.00 3.51
271 294 0.250727 CTCCAACATCCCGTGGTTGT 60.251 55.000 0.00 2.00 42.09 3.32
272 295 0.036164 TCTCCAACATCCCGTGGTTG 59.964 55.000 0.00 0.00 43.02 3.77
298 321 2.903855 GCATCCCGGCATCTGGTG 60.904 66.667 0.00 0.00 0.00 4.17
299 322 3.092511 AGCATCCCGGCATCTGGT 61.093 61.111 0.00 0.00 35.83 4.00
300 323 2.593725 CAGCATCCCGGCATCTGG 60.594 66.667 0.00 0.00 35.83 3.86
301 324 3.285215 GCAGCATCCCGGCATCTG 61.285 66.667 0.00 1.10 34.56 2.90
302 325 3.348554 TTGCAGCATCCCGGCATCT 62.349 57.895 0.00 0.00 44.04 2.90
326 349 3.838271 TCTCCAGCATCGCCGGTC 61.838 66.667 1.90 0.00 0.00 4.79
331 354 2.951745 CGTCGTCTCCAGCATCGC 60.952 66.667 0.00 0.00 0.00 4.58
354 385 4.662961 CAGTGGTCGTGCTCGCCA 62.663 66.667 16.58 16.58 39.47 5.69
397 428 2.301738 AAGGTAGCACTGCTCCCCC 61.302 63.158 6.86 6.51 35.12 5.40
398 429 1.078143 CAAGGTAGCACTGCTCCCC 60.078 63.158 6.86 9.07 35.12 4.81
401 432 1.532868 CAACACAAGGTAGCACTGCTC 59.467 52.381 6.86 0.00 40.44 4.26
402 433 1.134098 ACAACACAAGGTAGCACTGCT 60.134 47.619 8.95 8.95 43.41 4.24
403 434 1.264288 GACAACACAAGGTAGCACTGC 59.736 52.381 0.00 0.00 0.00 4.40
404 435 1.526887 CGACAACACAAGGTAGCACTG 59.473 52.381 0.00 0.00 0.00 3.66
405 436 1.540363 CCGACAACACAAGGTAGCACT 60.540 52.381 0.00 0.00 0.00 4.40
406 437 0.865769 CCGACAACACAAGGTAGCAC 59.134 55.000 0.00 0.00 0.00 4.40
407 438 0.882927 GCCGACAACACAAGGTAGCA 60.883 55.000 0.00 0.00 0.00 3.49
408 439 1.866925 GCCGACAACACAAGGTAGC 59.133 57.895 0.00 0.00 0.00 3.58
409 440 0.319211 TCGCCGACAACACAAGGTAG 60.319 55.000 0.00 0.00 0.00 3.18
410 441 0.598158 GTCGCCGACAACACAAGGTA 60.598 55.000 13.23 0.00 32.09 3.08
411 442 1.885850 GTCGCCGACAACACAAGGT 60.886 57.895 13.23 0.00 32.09 3.50
412 443 1.594293 AGTCGCCGACAACACAAGG 60.594 57.895 20.65 0.00 34.60 3.61
413 444 1.564622 CAGTCGCCGACAACACAAG 59.435 57.895 20.65 0.00 34.60 3.16
414 445 1.885388 CCAGTCGCCGACAACACAA 60.885 57.895 20.65 0.00 34.60 3.33
415 446 2.279851 CCAGTCGCCGACAACACA 60.280 61.111 20.65 0.00 34.60 3.72
416 447 3.712881 GCCAGTCGCCGACAACAC 61.713 66.667 20.65 1.86 34.60 3.32
417 448 3.454587 AAGCCAGTCGCCGACAACA 62.455 57.895 20.65 0.00 38.78 3.33
418 449 2.665185 AAGCCAGTCGCCGACAAC 60.665 61.111 20.65 8.01 38.78 3.32
419 450 2.664851 CAAGCCAGTCGCCGACAA 60.665 61.111 20.65 0.00 38.78 3.18
420 451 3.573772 CTCAAGCCAGTCGCCGACA 62.574 63.158 20.65 0.00 38.78 4.35
421 452 2.811317 CTCAAGCCAGTCGCCGAC 60.811 66.667 9.71 9.71 38.78 4.79
422 453 4.742201 GCTCAAGCCAGTCGCCGA 62.742 66.667 0.00 0.00 38.78 5.54
426 457 3.114616 CACCGCTCAAGCCAGTCG 61.115 66.667 0.00 0.00 37.91 4.18
427 458 2.743928 CCACCGCTCAAGCCAGTC 60.744 66.667 0.00 0.00 37.91 3.51
430 461 3.866379 ATTGCCACCGCTCAAGCCA 62.866 57.895 0.00 0.00 37.91 4.75
431 462 3.064324 ATTGCCACCGCTCAAGCC 61.064 61.111 0.00 0.00 37.91 4.35
432 463 2.180017 CATTGCCACCGCTCAAGC 59.820 61.111 0.00 0.00 35.36 4.01
433 464 2.180017 GCATTGCCACCGCTCAAG 59.820 61.111 0.00 0.00 35.36 3.02
446 477 1.889105 CGCCTACGCTGATGGCATT 60.889 57.895 0.00 0.00 46.39 3.56
458 489 0.246635 TTCTTCTCTGGTGCGCCTAC 59.753 55.000 18.96 0.00 35.27 3.18
463 1028 0.445436 GCATGTTCTTCTCTGGTGCG 59.555 55.000 0.00 0.00 0.00 5.34
478 1043 3.671410 TCCCCCAACCCCAGCATG 61.671 66.667 0.00 0.00 0.00 4.06
494 1059 1.308998 CTTGCACGGAATATGGGGTC 58.691 55.000 0.00 0.00 0.00 4.46
511 1076 3.228188 TGGATTGGACTTGCAAGACTT 57.772 42.857 32.50 10.86 0.00 3.01
512 1077 2.887152 GTTGGATTGGACTTGCAAGACT 59.113 45.455 32.50 11.68 0.00 3.24
513 1078 2.350772 CGTTGGATTGGACTTGCAAGAC 60.351 50.000 32.50 25.41 0.00 3.01
514 1079 1.879380 CGTTGGATTGGACTTGCAAGA 59.121 47.619 32.50 10.88 0.00 3.02
515 1080 1.879380 TCGTTGGATTGGACTTGCAAG 59.121 47.619 24.84 24.84 0.00 4.01
516 1081 1.606668 GTCGTTGGATTGGACTTGCAA 59.393 47.619 0.00 0.00 0.00 4.08
519 1084 3.623060 CCTATGTCGTTGGATTGGACTTG 59.377 47.826 0.00 0.00 0.00 3.16
545 1110 8.722342 AAATTGTTTTACGTGTAGCATTACTG 57.278 30.769 0.00 0.00 0.00 2.74
549 1114 9.997482 CCTATAAATTGTTTTACGTGTAGCATT 57.003 29.630 0.00 0.00 30.33 3.56
550 1115 9.169592 ACCTATAAATTGTTTTACGTGTAGCAT 57.830 29.630 0.00 0.00 30.33 3.79
579 1144 9.480861 TGACCAATCAAATTAACCCAATATGTA 57.519 29.630 0.00 0.00 0.00 2.29
580 1145 8.372877 TGACCAATCAAATTAACCCAATATGT 57.627 30.769 0.00 0.00 0.00 2.29
598 1163 2.291800 CCTCCCTCACCAATTGACCAAT 60.292 50.000 7.12 0.00 0.00 3.16
599 1164 1.075374 CCTCCCTCACCAATTGACCAA 59.925 52.381 7.12 0.00 0.00 3.67
600 1165 0.698238 CCTCCCTCACCAATTGACCA 59.302 55.000 7.12 0.00 0.00 4.02
601 1166 0.681243 GCCTCCCTCACCAATTGACC 60.681 60.000 7.12 0.00 0.00 4.02
602 1167 1.026718 CGCCTCCCTCACCAATTGAC 61.027 60.000 7.12 0.00 0.00 3.18
603 1168 1.299648 CGCCTCCCTCACCAATTGA 59.700 57.895 7.12 0.00 0.00 2.57
604 1169 1.750399 CCGCCTCCCTCACCAATTG 60.750 63.158 0.00 0.00 0.00 2.32
606 1171 4.115199 GCCGCCTCCCTCACCAAT 62.115 66.667 0.00 0.00 0.00 3.16
620 1185 3.801068 TTTTCAGGTGGGTGGGCCG 62.801 63.158 0.00 0.00 34.97 6.13
622 1187 0.541764 TGATTTTCAGGTGGGTGGGC 60.542 55.000 0.00 0.00 0.00 5.36
623 1188 1.549203 CTGATTTTCAGGTGGGTGGG 58.451 55.000 0.00 0.00 40.71 4.61
648 1213 3.509967 CCAATCACAAACTTTACCCCTCC 59.490 47.826 0.00 0.00 0.00 4.30
649 1214 4.149598 ACCAATCACAAACTTTACCCCTC 58.850 43.478 0.00 0.00 0.00 4.30
650 1215 4.193240 ACCAATCACAAACTTTACCCCT 57.807 40.909 0.00 0.00 0.00 4.79
653 1218 7.708998 TCTAACAACCAATCACAAACTTTACC 58.291 34.615 0.00 0.00 0.00 2.85
654 1219 9.180678 CATCTAACAACCAATCACAAACTTTAC 57.819 33.333 0.00 0.00 0.00 2.01
655 1220 8.908903 ACATCTAACAACCAATCACAAACTTTA 58.091 29.630 0.00 0.00 0.00 1.85
656 1221 7.781056 ACATCTAACAACCAATCACAAACTTT 58.219 30.769 0.00 0.00 0.00 2.66
657 1222 7.346751 ACATCTAACAACCAATCACAAACTT 57.653 32.000 0.00 0.00 0.00 2.66
658 1223 6.959639 ACATCTAACAACCAATCACAAACT 57.040 33.333 0.00 0.00 0.00 2.66
659 1224 9.180678 CTTTACATCTAACAACCAATCACAAAC 57.819 33.333 0.00 0.00 0.00 2.93
660 1225 9.126151 TCTTTACATCTAACAACCAATCACAAA 57.874 29.630 0.00 0.00 0.00 2.83
661 1226 8.684386 TCTTTACATCTAACAACCAATCACAA 57.316 30.769 0.00 0.00 0.00 3.33
662 1227 7.094805 GCTCTTTACATCTAACAACCAATCACA 60.095 37.037 0.00 0.00 0.00 3.58
663 1228 7.244192 GCTCTTTACATCTAACAACCAATCAC 58.756 38.462 0.00 0.00 0.00 3.06
664 1229 6.374333 GGCTCTTTACATCTAACAACCAATCA 59.626 38.462 0.00 0.00 0.00 2.57
666 1231 5.652452 GGGCTCTTTACATCTAACAACCAAT 59.348 40.000 0.00 0.00 0.00 3.16
669 1234 3.621715 CGGGCTCTTTACATCTAACAACC 59.378 47.826 0.00 0.00 0.00 3.77
670 1235 4.251268 ACGGGCTCTTTACATCTAACAAC 58.749 43.478 0.00 0.00 0.00 3.32
671 1236 4.546829 ACGGGCTCTTTACATCTAACAA 57.453 40.909 0.00 0.00 0.00 2.83
672 1237 5.664294 TTACGGGCTCTTTACATCTAACA 57.336 39.130 0.00 0.00 0.00 2.41
673 1238 6.973229 TTTTACGGGCTCTTTACATCTAAC 57.027 37.500 0.00 0.00 0.00 2.34
676 1241 5.990668 AGATTTTACGGGCTCTTTACATCT 58.009 37.500 0.00 0.00 0.00 2.90
677 1242 6.093633 ACAAGATTTTACGGGCTCTTTACATC 59.906 38.462 0.00 0.00 0.00 3.06
678 1243 5.944007 ACAAGATTTTACGGGCTCTTTACAT 59.056 36.000 0.00 0.00 0.00 2.29
679 1244 5.310451 ACAAGATTTTACGGGCTCTTTACA 58.690 37.500 0.00 0.00 0.00 2.41
680 1245 5.874895 ACAAGATTTTACGGGCTCTTTAC 57.125 39.130 0.00 0.00 0.00 2.01
681 1246 8.455682 CAATTACAAGATTTTACGGGCTCTTTA 58.544 33.333 0.00 0.00 0.00 1.85
684 1249 5.944007 ACAATTACAAGATTTTACGGGCTCT 59.056 36.000 0.00 0.00 0.00 4.09
686 1251 6.584185 AACAATTACAAGATTTTACGGGCT 57.416 33.333 0.00 0.00 0.00 5.19
687 1252 6.643360 ACAAACAATTACAAGATTTTACGGGC 59.357 34.615 0.00 0.00 0.00 6.13
688 1253 9.849166 ATACAAACAATTACAAGATTTTACGGG 57.151 29.630 0.00 0.00 0.00 5.28
696 1261 9.448438 TGCTAGACATACAAACAATTACAAGAT 57.552 29.630 0.00 0.00 0.00 2.40
697 1262 8.840833 TGCTAGACATACAAACAATTACAAGA 57.159 30.769 0.00 0.00 0.00 3.02
703 1268 8.711457 GCAAAAATGCTAGACATACAAACAATT 58.289 29.630 0.00 0.00 38.34 2.32
704 1269 7.871973 TGCAAAAATGCTAGACATACAAACAAT 59.128 29.630 0.00 0.00 38.34 2.71
705 1270 7.205992 TGCAAAAATGCTAGACATACAAACAA 58.794 30.769 0.00 0.00 38.34 2.83
706 1271 6.743110 TGCAAAAATGCTAGACATACAAACA 58.257 32.000 0.00 0.00 38.34 2.83
707 1272 7.816945 ATGCAAAAATGCTAGACATACAAAC 57.183 32.000 0.00 0.00 38.34 2.93
708 1273 8.190122 CCTATGCAAAAATGCTAGACATACAAA 58.810 33.333 0.00 0.00 38.34 2.83
710 1275 7.053498 TCCTATGCAAAAATGCTAGACATACA 58.947 34.615 0.00 0.00 38.34 2.29
711 1276 7.308229 CCTCCTATGCAAAAATGCTAGACATAC 60.308 40.741 0.00 0.00 38.34 2.39
713 1278 5.533903 CCTCCTATGCAAAAATGCTAGACAT 59.466 40.000 0.00 0.00 42.30 3.06
714 1279 4.883585 CCTCCTATGCAAAAATGCTAGACA 59.116 41.667 0.00 0.00 35.49 3.41
716 1281 4.883585 CACCTCCTATGCAAAAATGCTAGA 59.116 41.667 0.00 0.00 35.49 2.43
717 1282 4.883585 TCACCTCCTATGCAAAAATGCTAG 59.116 41.667 0.00 2.32 35.49 3.42
719 1284 3.445096 GTCACCTCCTATGCAAAAATGCT 59.555 43.478 0.00 0.00 35.49 3.79
720 1285 3.429410 GGTCACCTCCTATGCAAAAATGC 60.429 47.826 0.00 0.00 0.00 3.56
721 1286 3.131046 GGGTCACCTCCTATGCAAAAATG 59.869 47.826 0.00 0.00 0.00 2.32
722 1287 3.245586 TGGGTCACCTCCTATGCAAAAAT 60.246 43.478 0.00 0.00 37.76 1.82
723 1288 2.109128 TGGGTCACCTCCTATGCAAAAA 59.891 45.455 0.00 0.00 37.76 1.94
725 1290 1.367346 TGGGTCACCTCCTATGCAAA 58.633 50.000 0.00 0.00 37.76 3.68
728 1293 2.507407 TTTTGGGTCACCTCCTATGC 57.493 50.000 0.00 0.00 37.76 3.14
729 1294 4.381932 GCAATTTTTGGGTCACCTCCTATG 60.382 45.833 0.00 0.00 37.76 2.23
730 1295 3.769300 GCAATTTTTGGGTCACCTCCTAT 59.231 43.478 0.00 0.00 37.76 2.57
731 1296 3.161866 GCAATTTTTGGGTCACCTCCTA 58.838 45.455 0.00 0.00 37.76 2.94
756 3967 9.669887 CCGTAACTATCCTTATGTCTATACTCT 57.330 37.037 0.00 0.00 0.00 3.24
758 3969 8.609483 TCCCGTAACTATCCTTATGTCTATACT 58.391 37.037 0.00 0.00 0.00 2.12
759 3970 8.798859 TCCCGTAACTATCCTTATGTCTATAC 57.201 38.462 0.00 0.00 0.00 1.47
760 3971 9.986157 ATTCCCGTAACTATCCTTATGTCTATA 57.014 33.333 0.00 0.00 0.00 1.31
761 3972 8.896722 ATTCCCGTAACTATCCTTATGTCTAT 57.103 34.615 0.00 0.00 0.00 1.98
762 3973 8.716674 AATTCCCGTAACTATCCTTATGTCTA 57.283 34.615 0.00 0.00 0.00 2.59
763 3974 7.509659 AGAATTCCCGTAACTATCCTTATGTCT 59.490 37.037 0.65 0.00 0.00 3.41
764 3975 7.668492 AGAATTCCCGTAACTATCCTTATGTC 58.332 38.462 0.65 0.00 0.00 3.06
765 3976 7.613551 AGAATTCCCGTAACTATCCTTATGT 57.386 36.000 0.65 0.00 0.00 2.29
766 3977 7.754027 CGTAGAATTCCCGTAACTATCCTTATG 59.246 40.741 0.65 0.00 0.00 1.90
767 3978 7.094032 CCGTAGAATTCCCGTAACTATCCTTAT 60.094 40.741 12.47 0.00 0.00 1.73
768 3979 6.207417 CCGTAGAATTCCCGTAACTATCCTTA 59.793 42.308 12.47 0.00 0.00 2.69
769 3980 5.010415 CCGTAGAATTCCCGTAACTATCCTT 59.990 44.000 12.47 0.00 0.00 3.36
770 3981 4.522022 CCGTAGAATTCCCGTAACTATCCT 59.478 45.833 12.47 0.00 0.00 3.24
771 3982 4.520492 TCCGTAGAATTCCCGTAACTATCC 59.480 45.833 12.47 0.00 0.00 2.59
772 3983 5.695851 TCCGTAGAATTCCCGTAACTATC 57.304 43.478 12.47 0.00 0.00 2.08
773 3984 6.294955 GGATTCCGTAGAATTCCCGTAACTAT 60.295 42.308 12.47 1.56 42.93 2.12
774 3985 5.010012 GGATTCCGTAGAATTCCCGTAACTA 59.990 44.000 12.47 0.00 42.93 2.24
788 3999 0.384669 GTCACGAGGGGATTCCGTAG 59.615 60.000 0.00 0.00 41.52 3.51
806 4017 2.166907 AGATAGGCTAGCACAGGTGT 57.833 50.000 18.24 0.00 0.00 4.16
807 4018 4.085733 AGATAGATAGGCTAGCACAGGTG 58.914 47.826 18.24 0.00 37.96 4.00
808 4019 4.340617 GAGATAGATAGGCTAGCACAGGT 58.659 47.826 18.24 0.00 37.96 4.00
809 4020 3.376859 CGAGATAGATAGGCTAGCACAGG 59.623 52.174 18.24 0.00 37.96 4.00
811 4022 4.287766 TCGAGATAGATAGGCTAGCACA 57.712 45.455 18.24 3.17 37.96 4.57
812 4023 5.828299 AATCGAGATAGATAGGCTAGCAC 57.172 43.478 18.24 6.06 37.96 4.40
885 4103 4.035558 CAGAGAGAGAGAGAGGAAACGATG 59.964 50.000 0.00 0.00 0.00 3.84
891 4109 3.189606 AGGACAGAGAGAGAGAGAGGAA 58.810 50.000 0.00 0.00 0.00 3.36
903 4121 1.251527 GGGCGTTGAGAGGACAGAGA 61.252 60.000 0.00 0.00 0.00 3.10
904 4122 1.216710 GGGCGTTGAGAGGACAGAG 59.783 63.158 0.00 0.00 0.00 3.35
905 4123 0.904865 ATGGGCGTTGAGAGGACAGA 60.905 55.000 0.00 0.00 0.00 3.41
906 4124 0.036010 AATGGGCGTTGAGAGGACAG 60.036 55.000 0.00 0.00 0.00 3.51
907 4125 0.321564 CAATGGGCGTTGAGAGGACA 60.322 55.000 0.00 0.00 0.00 4.02
1095 4318 2.558554 GAACGGAGAGCGCCTTAGCA 62.559 60.000 2.29 0.00 39.83 3.49
1153 4376 3.630312 GCGGAGAATATGGTTGGCTAAAA 59.370 43.478 0.00 0.00 0.00 1.52
1174 4397 1.851658 ACGGCAATGTTTTCTGTTGC 58.148 45.000 0.97 0.97 45.54 4.17
1196 4419 1.417517 ACTGTCACAGCTGATGGACAA 59.582 47.619 27.41 17.65 38.10 3.18
1234 4457 1.132500 AAAGCGATCCTAAGAGGGGG 58.868 55.000 0.00 0.00 35.59 5.40
1236 4459 2.092914 ACCAAAAGCGATCCTAAGAGGG 60.093 50.000 0.00 0.00 35.59 4.30
1276 4499 8.902806 TGCAAAGAAAGAATTACAGAGAGAAAA 58.097 29.630 0.00 0.00 0.00 2.29
1377 4610 6.183360 GCAGCAGAATGTTATCCCAAGTAAAT 60.183 38.462 0.00 0.00 39.31 1.40
1385 4618 2.057137 TGGCAGCAGAATGTTATCCC 57.943 50.000 0.00 0.00 39.31 3.85
1426 4660 6.769134 TCTAGATGTGATAGTCGGTTCAAA 57.231 37.500 0.00 0.00 0.00 2.69
1427 4661 6.769134 TTCTAGATGTGATAGTCGGTTCAA 57.231 37.500 0.00 0.00 0.00 2.69
1428 4662 6.602009 TCTTTCTAGATGTGATAGTCGGTTCA 59.398 38.462 0.00 0.00 0.00 3.18
1429 4663 7.028926 TCTTTCTAGATGTGATAGTCGGTTC 57.971 40.000 0.00 0.00 0.00 3.62
1431 4665 7.406031 TTTCTTTCTAGATGTGATAGTCGGT 57.594 36.000 0.00 0.00 0.00 4.69
1432 4666 6.920758 CCTTTCTTTCTAGATGTGATAGTCGG 59.079 42.308 0.00 0.00 0.00 4.79
1433 4667 7.708051 TCCTTTCTTTCTAGATGTGATAGTCG 58.292 38.462 0.00 0.00 0.00 4.18
1434 4668 9.877178 TTTCCTTTCTTTCTAGATGTGATAGTC 57.123 33.333 0.00 0.00 0.00 2.59
1493 4727 4.331168 CAGTTGGATCTGAAAACTCGGATC 59.669 45.833 13.35 13.35 46.50 3.36
1544 4778 2.294074 CAGAAACCCCTCAAAACGACA 58.706 47.619 0.00 0.00 0.00 4.35
1548 4782 1.068588 GGCACAGAAACCCCTCAAAAC 59.931 52.381 0.00 0.00 0.00 2.43
1636 5158 7.277981 CCAACACCTAGTGACAGTTGATATAAC 59.722 40.741 0.96 0.00 41.41 1.89
1684 5206 2.698797 CACGGTTCCTACCAGGACATAT 59.301 50.000 0.00 0.00 45.78 1.78
1885 5407 9.995003 AATATGTAGATAAGGAGAAAGCAAGAG 57.005 33.333 0.00 0.00 0.00 2.85
1892 5414 6.934645 CGGCCAAATATGTAGATAAGGAGAAA 59.065 38.462 2.24 0.00 0.00 2.52
1898 5420 5.227908 ACGACGGCCAAATATGTAGATAAG 58.772 41.667 2.24 0.00 0.00 1.73
1944 5466 9.151471 TGATAGTAATTTGTCAAGAAGCAGTAC 57.849 33.333 0.00 0.00 0.00 2.73
1982 5504 3.512724 AGAATCAAAGCCCAACCAATCAG 59.487 43.478 0.00 0.00 0.00 2.90
2014 5536 1.875576 GCCACTGATGATCCACCGATC 60.876 57.143 0.00 0.00 44.57 3.69
2017 5539 1.091771 GTGCCACTGATGATCCACCG 61.092 60.000 0.00 0.00 0.00 4.94
2088 5610 2.846550 CGGTATCTGATTATAGCGCACG 59.153 50.000 11.47 0.00 43.67 5.34
2238 5764 4.701956 AATTCCCAGACAAAGTAATGCG 57.298 40.909 0.00 0.00 0.00 4.73
2247 5773 6.457159 TTTACCTCCTTAATTCCCAGACAA 57.543 37.500 0.00 0.00 0.00 3.18
2300 5826 0.375106 GTAGCCAGTTTCATGCGCTC 59.625 55.000 9.73 0.00 31.78 5.03
2349 5875 5.279506 CCTTCCACAAGTGAGCTCTAACTAA 60.280 44.000 16.19 1.25 0.00 2.24
2352 5878 3.330267 CCTTCCACAAGTGAGCTCTAAC 58.670 50.000 16.19 5.62 0.00 2.34
2411 5937 0.171007 CATCCACCGGCACAAATGAC 59.829 55.000 0.00 0.00 0.00 3.06
2547 6073 3.132925 GGAAGTAACTGCGTACCAACAA 58.867 45.455 0.00 0.00 0.00 2.83
2551 6077 0.244450 CGGGAAGTAACTGCGTACCA 59.756 55.000 0.00 0.00 0.00 3.25
2627 6153 2.954989 TGTACTGGCAACTGCATCAAAA 59.045 40.909 3.76 0.00 44.36 2.44
2682 6208 5.048507 ACAAAGGAACACGACTACTTCTTC 58.951 41.667 0.00 0.00 0.00 2.87
2683 6209 4.809426 CACAAAGGAACACGACTACTTCTT 59.191 41.667 0.00 0.00 0.00 2.52
2684 6210 4.369182 CACAAAGGAACACGACTACTTCT 58.631 43.478 0.00 0.00 0.00 2.85
2717 6243 6.701841 CACTAAAGTACAAAGACTGCAAGAGA 59.298 38.462 0.00 0.00 37.43 3.10
2720 6246 6.844696 TCACTAAAGTACAAAGACTGCAAG 57.155 37.500 0.00 0.00 42.29 4.01
2799 6325 6.441924 AGATCAAGTTGAGGATTCTTCACCTA 59.558 38.462 11.91 0.00 36.57 3.08
2847 6373 1.467734 GAGGAAGCAGCACAATGACAG 59.532 52.381 0.00 0.00 0.00 3.51
2870 6396 6.037062 CGACAATAACAGCAGAAACCATCATA 59.963 38.462 0.00 0.00 0.00 2.15
2884 6410 1.732259 GCACCAGACCGACAATAACAG 59.268 52.381 0.00 0.00 0.00 3.16
2910 6436 2.381911 GGTGTCAGGATCCATTGCATT 58.618 47.619 15.82 0.00 0.00 3.56
2986 6512 0.322816 TCATGTGGCTCAAAGGGCTC 60.323 55.000 0.00 0.00 0.00 4.70
3062 6588 5.377478 TCACAGAGATATGTACGATGGAGT 58.623 41.667 0.00 0.00 0.00 3.85
3070 6596 6.540189 ACCTGCATTTTCACAGAGATATGTAC 59.460 38.462 0.00 0.00 35.90 2.90
3206 6732 1.608283 CCGGGAGAAGGTGACTGAAAC 60.608 57.143 0.00 0.00 42.68 2.78
3213 6739 1.918293 ATGTGCCGGGAGAAGGTGA 60.918 57.895 2.18 0.00 0.00 4.02
3224 6750 3.494626 GTCAACCTACATATCATGTGCCG 59.505 47.826 2.07 0.00 44.60 5.69
3359 6885 2.818130 TTGGTTCCTGCTGAATTTGC 57.182 45.000 0.00 0.00 34.90 3.68
3390 6917 8.394121 GCTGACCAAAGACAAGAAATAGAATAG 58.606 37.037 0.00 0.00 0.00 1.73
3433 6960 2.121948 AGCAGTCCATCTCTTGCCATA 58.878 47.619 0.00 0.00 0.00 2.74
3451 6978 2.158549 AGCTGAGAATATTGGGGGAAGC 60.159 50.000 0.00 0.00 0.00 3.86
3568 7095 4.042934 GGCCAGTAACATATTACCATCCCT 59.957 45.833 0.00 0.00 41.54 4.20
3594 7121 4.864247 CACTTGGCAATGCTACCATTTTAC 59.136 41.667 4.82 0.00 39.60 2.01
3604 7131 0.964358 GCTCTCCACTTGGCAATGCT 60.964 55.000 4.82 0.00 34.44 3.79
3645 7173 6.653320 ACGCTTACCTGAATAAACAGATCAAA 59.347 34.615 0.00 0.00 39.94 2.69
3657 7185 0.676782 GTGCCCACGCTTACCTGAAT 60.677 55.000 0.00 0.00 35.36 2.57
3757 7285 3.781965 TGATTCAGGTGAGGATGGATCAA 59.218 43.478 0.00 0.00 38.26 2.57
3771 7299 6.703607 CCAGTATGTAAAGCTAGTGATTCAGG 59.296 42.308 0.00 0.00 0.00 3.86
3772 7300 6.703607 CCCAGTATGTAAAGCTAGTGATTCAG 59.296 42.308 0.00 0.00 0.00 3.02
3791 7319 0.543277 CTGCCTCTGAATGCCCAGTA 59.457 55.000 0.00 0.00 35.71 2.74
3792 7320 1.203441 TCTGCCTCTGAATGCCCAGT 61.203 55.000 0.00 0.00 35.71 4.00
3823 7351 0.611896 ATTGCCAAAAGGACCCTCCG 60.612 55.000 0.00 0.00 42.75 4.63
3910 7438 0.390340 CACCTTCTCGCTGCTGCTAA 60.390 55.000 14.03 4.63 36.97 3.09
3985 7518 7.469456 GCAACCACAAACTGAACCTAAATTAGA 60.469 37.037 0.83 0.00 0.00 2.10
3988 7521 5.356426 GCAACCACAAACTGAACCTAAATT 58.644 37.500 0.00 0.00 0.00 1.82
4012 7545 1.269413 ACGGTACAGTTCAGGTGTTCG 60.269 52.381 0.00 0.00 32.90 3.95
4016 7549 0.033504 AGCACGGTACAGTTCAGGTG 59.966 55.000 0.00 0.00 0.00 4.00
4068 7601 8.190784 CGAAATTTCCCTGCTTAAATGACTATT 58.809 33.333 12.54 0.00 0.00 1.73
4070 7603 6.657541 ACGAAATTTCCCTGCTTAAATGACTA 59.342 34.615 12.54 0.00 0.00 2.59
4088 7621 8.962679 TCTATTTACCATTTGGCTAACGAAATT 58.037 29.630 0.00 0.00 39.32 1.82
4090 7623 7.825270 TCTCTATTTACCATTTGGCTAACGAAA 59.175 33.333 0.00 0.00 39.32 3.46
4093 7626 7.548196 TTCTCTATTTACCATTTGGCTAACG 57.452 36.000 0.00 0.00 39.32 3.18
4106 7639 9.819267 TTTCCTAGCTAGCTTTTCTCTATTTAC 57.181 33.333 24.88 0.00 0.00 2.01
4118 7651 5.394562 AATCCCAATTTCCTAGCTAGCTT 57.605 39.130 24.88 7.25 0.00 3.74
4127 7660 8.506083 AGTAGATTGTGATAATCCCAATTTCCT 58.494 33.333 0.00 0.00 0.00 3.36
4187 7720 3.937706 GCAAGCTGAGAAAAGCAGATAGA 59.062 43.478 0.00 0.00 46.08 1.98
4188 7721 3.688185 TGCAAGCTGAGAAAAGCAGATAG 59.312 43.478 0.00 0.00 46.08 2.08
4313 7846 3.544684 TGAACTATGTATGCTTGGCAGG 58.455 45.455 0.00 0.00 43.65 4.85
4317 7850 6.932356 AAGTGATGAACTATGTATGCTTGG 57.068 37.500 0.00 0.00 38.56 3.61
4353 7886 3.053826 GGGAAGATAGGGGGTGTAACAT 58.946 50.000 0.00 0.00 39.98 2.71
4357 7890 3.246572 TGAAAGGGAAGATAGGGGGTGTA 60.247 47.826 0.00 0.00 0.00 2.90
4358 7891 2.206223 GAAAGGGAAGATAGGGGGTGT 58.794 52.381 0.00 0.00 0.00 4.16
4368 7901 9.447279 TCCTATTAGTAATCATGAAAGGGAAGA 57.553 33.333 0.00 0.00 0.00 2.87
4434 7967 3.119245 GGTGCTTCATCAACTGATTGCAT 60.119 43.478 12.10 0.00 42.01 3.96
4463 7996 5.047306 CCTTACCATATTGGCGATCTCACTA 60.047 44.000 0.00 0.00 42.67 2.74
4503 8036 7.094205 CCCAAAGCAAACCATCACTATATATCC 60.094 40.741 0.00 0.00 0.00 2.59
4537 8070 1.523758 AGAAACCGCTAGCACAAAGG 58.476 50.000 16.45 9.81 0.00 3.11
4546 8079 4.315803 CAAAGAGGAGAAAGAAACCGCTA 58.684 43.478 0.00 0.00 33.81 4.26
4757 8290 7.734924 TTATATGTTGCTTCTGAATAGGCTG 57.265 36.000 0.00 0.00 0.00 4.85
4808 8341 4.765273 TGTTGTGCATCGTATGGAACTAT 58.235 39.130 0.00 0.00 30.45 2.12
4840 8373 1.416813 CCGAGCAAGAGCAAGCTACG 61.417 60.000 0.00 0.00 45.49 3.51
4843 8376 1.670406 CACCGAGCAAGAGCAAGCT 60.670 57.895 0.00 0.00 45.49 3.74
4865 8398 3.627123 TCCGATGCATGAAAGTACAATGG 59.373 43.478 2.46 0.00 0.00 3.16
4963 8496 3.485463 TCAGGTTGTCCAAATTCGAGT 57.515 42.857 0.00 0.00 35.89 4.18
4964 8497 4.697352 AGAATCAGGTTGTCCAAATTCGAG 59.303 41.667 0.00 0.00 39.60 4.04
4965 8498 4.651778 AGAATCAGGTTGTCCAAATTCGA 58.348 39.130 0.00 0.00 39.60 3.71
4966 8499 5.411361 TGTAGAATCAGGTTGTCCAAATTCG 59.589 40.000 0.00 0.00 39.60 3.34
4967 8500 6.817765 TGTAGAATCAGGTTGTCCAAATTC 57.182 37.500 0.00 0.00 37.26 2.17
4968 8501 7.781324 ATTGTAGAATCAGGTTGTCCAAATT 57.219 32.000 0.00 0.00 35.89 1.82
4970 8503 7.595819 AAATTGTAGAATCAGGTTGTCCAAA 57.404 32.000 0.00 0.00 35.89 3.28
4973 8506 9.010029 TCTTTAAATTGTAGAATCAGGTTGTCC 57.990 33.333 0.00 0.00 0.00 4.02
5018 8552 3.146066 GGCACATGAAACCTAAGACACA 58.854 45.455 0.00 0.00 0.00 3.72
5021 8555 1.737793 CGGGCACATGAAACCTAAGAC 59.262 52.381 0.00 0.00 0.00 3.01
5060 8594 3.072211 CGTTGATGAGGATGCAGCATAT 58.928 45.455 8.22 0.00 33.77 1.78
5082 8616 3.449737 CCCGAGGTTCATTAGAAGGTACA 59.550 47.826 0.00 0.00 33.63 2.90
5101 8635 4.795278 CGTACAAGCTAAGTTACTTACCCG 59.205 45.833 0.03 0.00 0.00 5.28
5124 8658 8.179509 ACTAGTACATCAATGGTGTATACTCC 57.820 38.462 9.79 15.67 34.83 3.85
5189 8724 2.323959 ACAACAACAGCAACAACAACG 58.676 42.857 0.00 0.00 0.00 4.10
5198 8733 4.400884 AGGTGAAAATGTACAACAACAGCA 59.599 37.500 19.45 4.57 31.70 4.41
5199 8734 4.739716 CAGGTGAAAATGTACAACAACAGC 59.260 41.667 0.00 8.39 31.70 4.40
5200 8735 5.067153 TCCAGGTGAAAATGTACAACAACAG 59.933 40.000 0.00 0.00 31.70 3.16
5201 8736 4.950475 TCCAGGTGAAAATGTACAACAACA 59.050 37.500 0.00 0.00 0.00 3.33
5202 8737 5.508200 TCCAGGTGAAAATGTACAACAAC 57.492 39.130 0.00 1.20 0.00 3.32
5203 8738 6.531503 TTTCCAGGTGAAAATGTACAACAA 57.468 33.333 0.00 0.00 39.98 2.83
5204 8739 6.723298 ATTTCCAGGTGAAAATGTACAACA 57.277 33.333 0.00 0.00 45.67 3.33
5205 8740 7.312899 CCTATTTCCAGGTGAAAATGTACAAC 58.687 38.462 0.00 0.00 45.67 3.32
5206 8741 7.461182 CCTATTTCCAGGTGAAAATGTACAA 57.539 36.000 0.00 0.00 45.67 2.41
5266 8801 1.816835 CTACTCACGACAGCCAGGTTA 59.183 52.381 0.00 0.00 0.00 2.85
5269 8804 0.109086 CACTACTCACGACAGCCAGG 60.109 60.000 0.00 0.00 0.00 4.45
5274 8809 3.790456 GCTGCTATCACTACTCACGACAG 60.790 52.174 0.00 0.00 0.00 3.51
5279 8814 4.116747 AGTTGCTGCTATCACTACTCAC 57.883 45.455 0.00 0.00 0.00 3.51
5285 8820 3.969287 TCAGAAGTTGCTGCTATCACT 57.031 42.857 0.00 0.00 35.86 3.41
5314 8849 3.203161 TGAATCGAAGAGTGAGACACG 57.797 47.619 0.00 0.00 43.63 4.49
5370 8905 1.825191 CACCAGCCGCAAGCCATAT 60.825 57.895 0.00 0.00 45.47 1.78
5380 8915 4.081972 AGAGATATATTAGTGCACCAGCCG 60.082 45.833 14.63 0.00 41.13 5.52
5408 8943 1.697432 AGGGAACTGTGATTTCGACCA 59.303 47.619 0.00 0.00 41.13 4.02
5472 9007 9.147732 GATGAAAAATTAGAAGAATACCCCCAT 57.852 33.333 0.00 0.00 0.00 4.00
5495 9030 4.453478 AGTTCGCCAACATATATGCAGATG 59.547 41.667 12.79 4.32 34.60 2.90
5512 9047 3.479269 CCGCCTTCACGAGTTCGC 61.479 66.667 0.73 0.00 44.43 4.70
5616 9151 1.202325 CCATGTGTGATGGCCATTTCG 60.202 52.381 21.84 4.58 31.75 3.46
5671 9206 1.491332 TCAAAACTCGGGGGTTCTTCA 59.509 47.619 0.00 0.00 0.00 3.02
5740 9275 8.613060 ATTGATTGTAATCCTATGTAGTGCTG 57.387 34.615 2.41 0.00 34.50 4.41
5783 9318 2.452491 AGCCTCCTGGGGTTGGTT 60.452 61.111 0.00 0.00 44.41 3.67
5793 9328 1.633774 TCTTTCGAACAGAGCCTCCT 58.366 50.000 0.00 0.00 0.00 3.69
5823 9359 2.615493 GCAGTCCTCCGATTTTTCCTCA 60.615 50.000 0.00 0.00 0.00 3.86
5859 9395 3.684788 CCAAAGAACGAGGGTATGACTTG 59.315 47.826 0.00 0.00 0.00 3.16
5872 9408 5.622770 ACAAGCCTATAAACCAAAGAACG 57.377 39.130 0.00 0.00 0.00 3.95
5993 9529 2.997986 CGGTGGTCAAGGTATACACAAC 59.002 50.000 5.01 0.00 33.91 3.32
5994 9530 2.613474 GCGGTGGTCAAGGTATACACAA 60.613 50.000 5.01 0.00 33.91 3.33
6058 9601 1.524008 GGGGTTGCAGGAAAGGTTCG 61.524 60.000 0.00 0.00 0.00 3.95
6123 9671 2.806434 TGGGAGGTGTTTCATTGATGG 58.194 47.619 0.00 0.00 0.00 3.51
6163 9711 3.140325 ACATATTGGGTAGGGCATTCG 57.860 47.619 0.00 0.00 0.00 3.34
6190 9738 0.320421 TGCTGACGTAAAGGACAGCC 60.320 55.000 18.54 5.16 46.01 4.85
6259 9807 0.620700 TTGGAGCTCTTACCTCCCCC 60.621 60.000 14.64 0.00 46.69 5.40
6260 9808 1.286248 TTTGGAGCTCTTACCTCCCC 58.714 55.000 14.64 0.00 46.69 4.81
6261 9809 3.434940 TTTTTGGAGCTCTTACCTCCC 57.565 47.619 14.64 0.00 46.69 4.30
6279 9827 9.089601 ACGAATTTTCAAAAATAGGTCGTTTTT 57.910 25.926 15.42 0.00 42.18 1.94
6280 9828 8.637281 ACGAATTTTCAAAAATAGGTCGTTTT 57.363 26.923 15.42 1.28 42.18 2.43
6281 9829 7.112426 CGACGAATTTTCAAAAATAGGTCGTTT 59.888 33.333 25.98 11.29 45.92 3.60
6282 9830 6.575942 CGACGAATTTTCAAAAATAGGTCGTT 59.424 34.615 25.98 14.15 45.92 3.85
6283 9831 6.075280 CGACGAATTTTCAAAAATAGGTCGT 58.925 36.000 25.98 22.80 45.92 4.34
6284 9832 6.520449 CGACGAATTTTCAAAAATAGGTCG 57.480 37.500 23.85 23.85 45.88 4.79
6285 9833 9.763465 TTATCGACGAATTTTCAAAAATAGGTC 57.237 29.630 0.00 14.99 37.62 3.85
6286 9834 9.550811 GTTATCGACGAATTTTCAAAAATAGGT 57.449 29.630 0.00 3.26 37.62 3.08
6287 9835 9.006215 GGTTATCGACGAATTTTCAAAAATAGG 57.994 33.333 0.00 0.46 37.62 2.57
6288 9836 9.549509 TGGTTATCGACGAATTTTCAAAAATAG 57.450 29.630 0.00 2.63 37.62 1.73
6289 9837 9.332301 GTGGTTATCGACGAATTTTCAAAAATA 57.668 29.630 0.00 0.00 37.62 1.40
6290 9838 7.327518 GGTGGTTATCGACGAATTTTCAAAAAT 59.672 33.333 0.00 0.00 40.15 1.82
6291 9839 6.637658 GGTGGTTATCGACGAATTTTCAAAAA 59.362 34.615 0.00 0.00 0.00 1.94
6292 9840 6.144175 GGTGGTTATCGACGAATTTTCAAAA 58.856 36.000 0.00 0.00 0.00 2.44
6293 9841 5.238868 TGGTGGTTATCGACGAATTTTCAAA 59.761 36.000 0.00 0.00 0.00 2.69
6294 9842 4.755629 TGGTGGTTATCGACGAATTTTCAA 59.244 37.500 0.00 0.00 0.00 2.69
6295 9843 4.152759 GTGGTGGTTATCGACGAATTTTCA 59.847 41.667 0.00 0.00 0.00 2.69
6296 9844 4.152759 TGTGGTGGTTATCGACGAATTTTC 59.847 41.667 0.00 0.00 0.00 2.29
6297 9845 4.066490 TGTGGTGGTTATCGACGAATTTT 58.934 39.130 0.00 0.00 0.00 1.82
6298 9846 3.666274 TGTGGTGGTTATCGACGAATTT 58.334 40.909 0.00 0.00 0.00 1.82
6299 9847 3.322211 TGTGGTGGTTATCGACGAATT 57.678 42.857 0.00 0.00 0.00 2.17
6300 9848 3.259064 CTTGTGGTGGTTATCGACGAAT 58.741 45.455 0.00 0.00 0.00 3.34
6301 9849 2.036217 ACTTGTGGTGGTTATCGACGAA 59.964 45.455 0.00 0.00 0.00 3.85
6302 9850 1.614903 ACTTGTGGTGGTTATCGACGA 59.385 47.619 0.00 0.00 0.00 4.20
6303 9851 2.074547 ACTTGTGGTGGTTATCGACG 57.925 50.000 0.00 0.00 0.00 5.12
6304 9852 3.058501 CCAAACTTGTGGTGGTTATCGAC 60.059 47.826 0.00 0.00 33.63 4.20
6305 9853 3.142951 CCAAACTTGTGGTGGTTATCGA 58.857 45.455 0.00 0.00 33.63 3.59
6306 9854 3.142951 TCCAAACTTGTGGTGGTTATCG 58.857 45.455 4.37 0.00 39.88 2.92
6307 9855 5.722021 AATCCAAACTTGTGGTGGTTATC 57.278 39.130 4.37 0.00 39.88 1.75
6308 9856 5.278758 CGAAATCCAAACTTGTGGTGGTTAT 60.279 40.000 4.37 0.00 39.88 1.89
6309 9857 4.036971 CGAAATCCAAACTTGTGGTGGTTA 59.963 41.667 4.37 0.00 39.88 2.85
6310 9858 3.181480 CGAAATCCAAACTTGTGGTGGTT 60.181 43.478 4.37 0.00 39.88 3.67
6311 9859 2.360801 CGAAATCCAAACTTGTGGTGGT 59.639 45.455 4.37 0.00 39.88 4.16
6312 9860 2.360801 ACGAAATCCAAACTTGTGGTGG 59.639 45.455 0.00 0.00 39.88 4.61
6313 9861 3.708563 ACGAAATCCAAACTTGTGGTG 57.291 42.857 0.00 0.00 39.88 4.17
6314 9862 4.158764 TGAAACGAAATCCAAACTTGTGGT 59.841 37.500 0.00 0.00 39.88 4.16
6315 9863 4.677584 TGAAACGAAATCCAAACTTGTGG 58.322 39.130 0.00 0.00 40.33 4.17
6316 9864 6.639671 TTTGAAACGAAATCCAAACTTGTG 57.360 33.333 0.00 0.00 0.00 3.33
6317 9865 7.659652 TTTTTGAAACGAAATCCAAACTTGT 57.340 28.000 0.00 0.00 0.00 3.16
6367 9915 8.603304 GGCCCTCCTTATCATAAACTAGATTAA 58.397 37.037 0.00 0.00 0.00 1.40
6368 9916 7.182206 GGGCCCTCCTTATCATAAACTAGATTA 59.818 40.741 17.04 0.00 0.00 1.75
6369 9917 6.012421 GGGCCCTCCTTATCATAAACTAGATT 60.012 42.308 17.04 0.00 0.00 2.40
6370 9918 5.489278 GGGCCCTCCTTATCATAAACTAGAT 59.511 44.000 17.04 0.00 0.00 1.98
6371 9919 4.844655 GGGCCCTCCTTATCATAAACTAGA 59.155 45.833 17.04 0.00 0.00 2.43
6372 9920 4.597507 TGGGCCCTCCTTATCATAAACTAG 59.402 45.833 25.70 0.00 36.20 2.57
6373 9921 4.572978 TGGGCCCTCCTTATCATAAACTA 58.427 43.478 25.70 0.00 36.20 2.24
6374 9922 3.403322 TGGGCCCTCCTTATCATAAACT 58.597 45.455 25.70 0.00 36.20 2.66
6375 9923 3.876309 TGGGCCCTCCTTATCATAAAC 57.124 47.619 25.70 0.00 36.20 2.01
6376 9924 3.986817 TGATGGGCCCTCCTTATCATAAA 59.013 43.478 25.70 0.00 33.89 1.40
6377 9925 3.608067 TGATGGGCCCTCCTTATCATAA 58.392 45.455 25.70 0.00 33.89 1.90
6378 9926 3.290039 TGATGGGCCCTCCTTATCATA 57.710 47.619 25.70 0.00 33.89 2.15
6379 9927 2.138535 TGATGGGCCCTCCTTATCAT 57.861 50.000 25.70 4.72 33.89 2.45
6380 9928 1.905839 TTGATGGGCCCTCCTTATCA 58.094 50.000 25.70 20.10 35.60 2.15
6381 9929 2.556114 CCATTGATGGGCCCTCCTTATC 60.556 54.545 25.70 17.53 44.31 1.75
6382 9930 1.430464 CCATTGATGGGCCCTCCTTAT 59.570 52.381 25.70 7.43 44.31 1.73
6383 9931 0.852842 CCATTGATGGGCCCTCCTTA 59.147 55.000 25.70 1.02 44.31 2.69
6384 9932 1.622499 CCATTGATGGGCCCTCCTT 59.378 57.895 25.70 4.90 44.31 3.36
6385 9933 3.350250 CCATTGATGGGCCCTCCT 58.650 61.111 25.70 7.68 44.31 3.69
6394 9942 4.139038 TGCTGATGTACCATCCATTGATG 58.861 43.478 0.00 0.00 46.61 3.07
6395 9943 4.442401 TGCTGATGTACCATCCATTGAT 57.558 40.909 2.02 0.00 0.00 2.57
6396 9944 3.929955 TGCTGATGTACCATCCATTGA 57.070 42.857 2.02 0.00 0.00 2.57
6397 9945 4.139038 TCATGCTGATGTACCATCCATTG 58.861 43.478 2.02 0.00 0.00 2.82
6398 9946 4.103627 TCTCATGCTGATGTACCATCCATT 59.896 41.667 2.02 0.00 0.00 3.16
6399 9947 3.649502 TCTCATGCTGATGTACCATCCAT 59.350 43.478 2.02 0.00 0.00 3.41
6400 9948 3.040477 TCTCATGCTGATGTACCATCCA 58.960 45.455 2.02 0.00 0.00 3.41
6401 9949 3.181462 TGTCTCATGCTGATGTACCATCC 60.181 47.826 2.02 0.00 0.00 3.51
6402 9950 4.063998 TGTCTCATGCTGATGTACCATC 57.936 45.455 0.00 0.00 0.00 3.51
6403 9951 4.492494 TTGTCTCATGCTGATGTACCAT 57.508 40.909 0.00 0.00 0.00 3.55
6404 9952 3.979101 TTGTCTCATGCTGATGTACCA 57.021 42.857 0.00 0.00 0.00 3.25
6405 9953 3.062639 CGTTTGTCTCATGCTGATGTACC 59.937 47.826 0.00 0.00 0.00 3.34
6406 9954 3.926527 TCGTTTGTCTCATGCTGATGTAC 59.073 43.478 0.00 0.00 0.00 2.90
6407 9955 3.926527 GTCGTTTGTCTCATGCTGATGTA 59.073 43.478 0.00 0.00 0.00 2.29
6408 9956 2.738846 GTCGTTTGTCTCATGCTGATGT 59.261 45.455 0.00 0.00 0.00 3.06
6409 9957 2.738314 TGTCGTTTGTCTCATGCTGATG 59.262 45.455 0.00 0.00 0.00 3.07
6410 9958 2.738846 GTGTCGTTTGTCTCATGCTGAT 59.261 45.455 0.00 0.00 0.00 2.90
6411 9959 2.135139 GTGTCGTTTGTCTCATGCTGA 58.865 47.619 0.00 0.00 0.00 4.26
6412 9960 1.136529 CGTGTCGTTTGTCTCATGCTG 60.137 52.381 0.00 0.00 0.00 4.41
6413 9961 1.139989 CGTGTCGTTTGTCTCATGCT 58.860 50.000 0.00 0.00 0.00 3.79
6414 9962 0.163788 CCGTGTCGTTTGTCTCATGC 59.836 55.000 0.00 0.00 0.00 4.06
6415 9963 0.163788 GCCGTGTCGTTTGTCTCATG 59.836 55.000 0.00 0.00 0.00 3.07
6416 9964 0.949105 GGCCGTGTCGTTTGTCTCAT 60.949 55.000 0.00 0.00 0.00 2.90
6417 9965 1.593209 GGCCGTGTCGTTTGTCTCA 60.593 57.895 0.00 0.00 0.00 3.27
6418 9966 2.654912 CGGCCGTGTCGTTTGTCTC 61.655 63.158 19.50 0.00 0.00 3.36
6419 9967 2.660552 CGGCCGTGTCGTTTGTCT 60.661 61.111 19.50 0.00 0.00 3.41
6420 9968 2.963320 ACGGCCGTGTCGTTTGTC 60.963 61.111 33.75 0.00 42.79 3.18
6426 9974 1.202320 GTTGTTAACGGCCGTGTCG 59.798 57.895 34.95 4.23 36.42 4.35
6436 9984 1.205820 GCGACCAGCCGTTGTTAAC 59.794 57.895 0.00 0.00 40.81 2.01
6437 9985 2.311701 CGCGACCAGCCGTTGTTAA 61.312 57.895 0.00 0.00 44.76 2.01
6438 9986 2.735478 CGCGACCAGCCGTTGTTA 60.735 61.111 0.00 0.00 44.76 2.41
6439 9987 4.903010 ACGCGACCAGCCGTTGTT 62.903 61.111 15.93 0.00 44.76 2.83



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.