Multiple sequence alignment - TraesCS1D01G137700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G137700 chr1D 100.000 3145 0 0 1 3145 188003216 188000072 0.000000e+00 5808
1 TraesCS1D01G137700 chr6B 90.967 2358 187 12 811 3145 333274296 333271942 0.000000e+00 3151
2 TraesCS1D01G137700 chr6B 82.972 1568 201 40 1638 3145 57462259 57463820 0.000000e+00 1356
3 TraesCS1D01G137700 chr6B 89.196 398 34 9 368 756 333274714 333274317 3.650000e-134 488
4 TraesCS1D01G137700 chr4B 85.007 1474 184 28 1702 3145 187072782 187074248 0.000000e+00 1463
5 TraesCS1D01G137700 chr4B 83.109 1563 204 36 1638 3145 664312932 664314489 0.000000e+00 1369
6 TraesCS1D01G137700 chr4B 82.357 1570 209 42 1638 3145 542041021 542039458 0.000000e+00 1303
7 TraesCS1D01G137700 chr4B 91.695 590 43 5 2158 2743 496567004 496566417 0.000000e+00 813
8 TraesCS1D01G137700 chr4B 94.349 407 23 0 2739 3145 496554439 496554033 2.660000e-175 625
9 TraesCS1D01G137700 chr4B 91.463 246 17 2 368 612 364033518 364033760 5.030000e-88 335
10 TraesCS1D01G137700 chr6A 85.265 1432 175 28 1702 3103 530131796 530130371 0.000000e+00 1443
11 TraesCS1D01G137700 chr4A 83.640 1467 183 31 1735 3145 605071956 605070491 0.000000e+00 1327
12 TraesCS1D01G137700 chr4A 85.356 519 36 21 368 869 571337582 571338077 4.680000e-138 501
13 TraesCS1D01G137700 chr4A 90.400 250 18 4 368 615 468762603 468762358 1.090000e-84 324
14 TraesCS1D01G137700 chr5A 83.572 1467 184 33 1735 3145 40353853 40352388 0.000000e+00 1321
15 TraesCS1D01G137700 chr2D 83.345 1471 183 39 1735 3145 398630095 398628627 0.000000e+00 1303
16 TraesCS1D01G137700 chr2D 97.011 368 10 1 1 367 137330734 137331101 4.460000e-173 617
17 TraesCS1D01G137700 chr2B 83.652 1413 198 21 1760 3145 439200736 439199330 0.000000e+00 1299
18 TraesCS1D01G137700 chr2B 89.130 276 21 6 368 641 556674133 556673865 5.030000e-88 335
19 TraesCS1D01G137700 chr5B 83.242 1456 188 33 1735 3145 134932172 134930728 0.000000e+00 1286
20 TraesCS1D01G137700 chr1B 86.037 1017 93 27 368 1342 502239570 502238561 0.000000e+00 1046
21 TraesCS1D01G137700 chr3D 85.230 914 121 11 2244 3145 429380226 429379315 0.000000e+00 928
22 TraesCS1D01G137700 chr7A 89.236 641 68 1 2506 3145 448075577 448074937 0.000000e+00 800
23 TraesCS1D01G137700 chr7A 83.019 742 99 17 1735 2449 448076402 448075661 0.000000e+00 647
24 TraesCS1D01G137700 chr7A 97.283 368 9 1 1 367 286734398 286734031 9.580000e-175 623
25 TraesCS1D01G137700 chr5D 97.011 368 10 1 1 367 36888275 36887908 4.460000e-173 617
26 TraesCS1D01G137700 chr5D 96.739 368 11 1 1 367 270074471 270074838 2.070000e-171 612
27 TraesCS1D01G137700 chr5D 96.196 368 12 2 1 367 333954258 333953892 4.490000e-168 601
28 TraesCS1D01G137700 chr7D 96.467 368 12 1 1 367 175787454 175787087 9.650000e-170 606
29 TraesCS1D01G137700 chr7D 96.467 368 12 1 1 367 299026231 299026598 9.650000e-170 606
30 TraesCS1D01G137700 chr7D 91.200 250 17 3 368 615 543586593 543586347 5.030000e-88 335
31 TraesCS1D01G137700 chr6D 96.467 368 11 2 1 367 129871871 129872237 9.650000e-170 606
32 TraesCS1D01G137700 chr4D 95.924 368 14 1 1 367 331835331 331835698 2.090000e-166 595
33 TraesCS1D01G137700 chr1A 92.713 247 13 3 368 612 337701710 337701953 4.990000e-93 351
34 TraesCS1D01G137700 chrUn 92.032 251 14 4 368 615 10301110 10300863 6.460000e-92 348


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G137700 chr1D 188000072 188003216 3144 True 5808.0 5808 100.0000 1 3145 1 chr1D.!!$R1 3144
1 TraesCS1D01G137700 chr6B 333271942 333274714 2772 True 1819.5 3151 90.0815 368 3145 2 chr6B.!!$R1 2777
2 TraesCS1D01G137700 chr6B 57462259 57463820 1561 False 1356.0 1356 82.9720 1638 3145 1 chr6B.!!$F1 1507
3 TraesCS1D01G137700 chr4B 187072782 187074248 1466 False 1463.0 1463 85.0070 1702 3145 1 chr4B.!!$F1 1443
4 TraesCS1D01G137700 chr4B 664312932 664314489 1557 False 1369.0 1369 83.1090 1638 3145 1 chr4B.!!$F3 1507
5 TraesCS1D01G137700 chr4B 542039458 542041021 1563 True 1303.0 1303 82.3570 1638 3145 1 chr4B.!!$R3 1507
6 TraesCS1D01G137700 chr4B 496566417 496567004 587 True 813.0 813 91.6950 2158 2743 1 chr4B.!!$R2 585
7 TraesCS1D01G137700 chr6A 530130371 530131796 1425 True 1443.0 1443 85.2650 1702 3103 1 chr6A.!!$R1 1401
8 TraesCS1D01G137700 chr4A 605070491 605071956 1465 True 1327.0 1327 83.6400 1735 3145 1 chr4A.!!$R2 1410
9 TraesCS1D01G137700 chr5A 40352388 40353853 1465 True 1321.0 1321 83.5720 1735 3145 1 chr5A.!!$R1 1410
10 TraesCS1D01G137700 chr2D 398628627 398630095 1468 True 1303.0 1303 83.3450 1735 3145 1 chr2D.!!$R1 1410
11 TraesCS1D01G137700 chr2B 439199330 439200736 1406 True 1299.0 1299 83.6520 1760 3145 1 chr2B.!!$R1 1385
12 TraesCS1D01G137700 chr5B 134930728 134932172 1444 True 1286.0 1286 83.2420 1735 3145 1 chr5B.!!$R1 1410
13 TraesCS1D01G137700 chr1B 502238561 502239570 1009 True 1046.0 1046 86.0370 368 1342 1 chr1B.!!$R1 974
14 TraesCS1D01G137700 chr3D 429379315 429380226 911 True 928.0 928 85.2300 2244 3145 1 chr3D.!!$R1 901
15 TraesCS1D01G137700 chr7A 448074937 448076402 1465 True 723.5 800 86.1275 1735 3145 2 chr7A.!!$R2 1410


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.031721 GGGCTACTACGTTCATCCGG 59.968 60.0 0.0 0.0 0.00 5.14 F
75 76 0.031721 GGCTACTACGTTCATCCGGG 59.968 60.0 0.0 0.0 0.00 5.73 F
1284 1350 0.039617 CATTTGCTCCGCCAACGAAA 60.040 50.0 0.0 0.0 43.93 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1012 1066 0.105778 GCCTCCTGGATGTCTGCTAC 59.894 60.000 0.00 0.00 34.57 3.58 R
1999 2087 1.003580 TCTCCATGCTCACTTTCCCAC 59.996 52.381 0.00 0.00 0.00 4.61 R
2471 2604 1.992667 GGCAAAAGCTTAATGAACCGC 59.007 47.619 14.52 2.96 0.00 5.68 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 6.773976 TGCAGAGTAAATAAAAATGGAGGG 57.226 37.500 0.00 0.00 0.00 4.30
58 59 5.127031 TGCAGAGTAAATAAAAATGGAGGGC 59.873 40.000 0.00 0.00 0.00 5.19
59 60 5.360999 GCAGAGTAAATAAAAATGGAGGGCT 59.639 40.000 0.00 0.00 0.00 5.19
60 61 6.546034 GCAGAGTAAATAAAAATGGAGGGCTA 59.454 38.462 0.00 0.00 0.00 3.93
61 62 7.468768 GCAGAGTAAATAAAAATGGAGGGCTAC 60.469 40.741 0.00 0.00 0.00 3.58
62 63 7.775561 CAGAGTAAATAAAAATGGAGGGCTACT 59.224 37.037 0.00 0.00 0.00 2.57
63 64 8.999895 AGAGTAAATAAAAATGGAGGGCTACTA 58.000 33.333 0.00 0.00 0.00 1.82
64 65 8.975663 AGTAAATAAAAATGGAGGGCTACTAC 57.024 34.615 0.00 0.00 0.00 2.73
65 66 6.937436 AAATAAAAATGGAGGGCTACTACG 57.063 37.500 0.00 0.00 30.06 3.51
66 67 3.994931 AAAAATGGAGGGCTACTACGT 57.005 42.857 0.00 0.00 30.06 3.57
67 68 3.994931 AAAATGGAGGGCTACTACGTT 57.005 42.857 0.00 0.00 41.13 3.99
68 69 3.538634 AAATGGAGGGCTACTACGTTC 57.461 47.619 0.00 0.00 38.34 3.95
69 70 2.154567 ATGGAGGGCTACTACGTTCA 57.845 50.000 0.00 0.00 30.06 3.18
70 71 2.154567 TGGAGGGCTACTACGTTCAT 57.845 50.000 0.00 0.00 30.06 2.57
71 72 2.029623 TGGAGGGCTACTACGTTCATC 58.970 52.381 0.00 0.00 30.06 2.92
72 73 1.340568 GGAGGGCTACTACGTTCATCC 59.659 57.143 0.00 0.00 0.00 3.51
73 74 1.001597 GAGGGCTACTACGTTCATCCG 60.002 57.143 0.00 0.00 0.00 4.18
74 75 0.031721 GGGCTACTACGTTCATCCGG 59.968 60.000 0.00 0.00 0.00 5.14
75 76 0.031721 GGCTACTACGTTCATCCGGG 59.968 60.000 0.00 0.00 0.00 5.73
76 77 0.743097 GCTACTACGTTCATCCGGGT 59.257 55.000 0.00 0.00 0.00 5.28
77 78 1.135721 GCTACTACGTTCATCCGGGTT 59.864 52.381 0.00 0.00 0.00 4.11
78 79 2.417787 GCTACTACGTTCATCCGGGTTT 60.418 50.000 0.00 0.00 0.00 3.27
79 80 2.845363 ACTACGTTCATCCGGGTTTT 57.155 45.000 0.00 0.00 0.00 2.43
80 81 3.130280 ACTACGTTCATCCGGGTTTTT 57.870 42.857 0.00 0.00 0.00 1.94
81 82 4.270245 ACTACGTTCATCCGGGTTTTTA 57.730 40.909 0.00 0.00 0.00 1.52
82 83 4.248058 ACTACGTTCATCCGGGTTTTTAG 58.752 43.478 0.00 0.00 0.00 1.85
83 84 3.130280 ACGTTCATCCGGGTTTTTAGT 57.870 42.857 0.00 0.00 0.00 2.24
84 85 3.069289 ACGTTCATCCGGGTTTTTAGTC 58.931 45.455 0.00 0.00 0.00 2.59
85 86 2.417586 CGTTCATCCGGGTTTTTAGTCC 59.582 50.000 0.00 0.00 0.00 3.85
86 87 3.414269 GTTCATCCGGGTTTTTAGTCCA 58.586 45.455 0.00 0.00 0.00 4.02
87 88 3.062122 TCATCCGGGTTTTTAGTCCAC 57.938 47.619 0.00 0.00 0.00 4.02
88 89 2.372504 TCATCCGGGTTTTTAGTCCACA 59.627 45.455 0.00 0.00 0.00 4.17
89 90 2.259266 TCCGGGTTTTTAGTCCACAC 57.741 50.000 0.00 0.00 0.00 3.82
90 91 1.202794 TCCGGGTTTTTAGTCCACACC 60.203 52.381 0.00 0.00 0.00 4.16
91 92 1.477195 CCGGGTTTTTAGTCCACACCA 60.477 52.381 0.00 0.00 0.00 4.17
92 93 2.510613 CGGGTTTTTAGTCCACACCAT 58.489 47.619 0.00 0.00 0.00 3.55
93 94 2.888414 CGGGTTTTTAGTCCACACCATT 59.112 45.455 0.00 0.00 0.00 3.16
94 95 3.319689 CGGGTTTTTAGTCCACACCATTT 59.680 43.478 0.00 0.00 0.00 2.32
95 96 4.202172 CGGGTTTTTAGTCCACACCATTTT 60.202 41.667 0.00 0.00 0.00 1.82
96 97 5.676552 GGGTTTTTAGTCCACACCATTTTT 58.323 37.500 0.00 0.00 0.00 1.94
125 126 9.520515 AATCAAAGTCTGACCACATATTTAGTT 57.479 29.630 3.76 0.00 36.69 2.24
131 132 9.765795 AGTCTGACCACATATTTAGTTAATAGC 57.234 33.333 3.76 0.00 32.40 2.97
132 133 8.989980 GTCTGACCACATATTTAGTTAATAGCC 58.010 37.037 0.00 0.00 32.40 3.93
133 134 7.870954 TCTGACCACATATTTAGTTAATAGCCG 59.129 37.037 0.00 0.00 32.40 5.52
134 135 6.932400 TGACCACATATTTAGTTAATAGCCGG 59.068 38.462 0.00 0.00 32.40 6.13
135 136 7.069877 ACCACATATTTAGTTAATAGCCGGA 57.930 36.000 5.05 0.00 32.40 5.14
136 137 6.932960 ACCACATATTTAGTTAATAGCCGGAC 59.067 38.462 5.05 0.00 32.40 4.79
137 138 6.932400 CCACATATTTAGTTAATAGCCGGACA 59.068 38.462 5.05 0.00 32.40 4.02
138 139 7.442969 CCACATATTTAGTTAATAGCCGGACAA 59.557 37.037 5.05 0.00 32.40 3.18
139 140 8.832521 CACATATTTAGTTAATAGCCGGACAAA 58.167 33.333 5.05 0.00 32.40 2.83
140 141 9.569122 ACATATTTAGTTAATAGCCGGACAAAT 57.431 29.630 5.05 5.21 32.40 2.32
151 152 5.576447 AGCCGGACAAATAAAATTACAGG 57.424 39.130 5.05 0.00 0.00 4.00
152 153 4.401202 AGCCGGACAAATAAAATTACAGGG 59.599 41.667 5.05 0.00 0.00 4.45
153 154 4.440940 GCCGGACAAATAAAATTACAGGGG 60.441 45.833 5.05 0.00 0.00 4.79
154 155 4.951094 CCGGACAAATAAAATTACAGGGGA 59.049 41.667 0.00 0.00 0.00 4.81
155 156 5.067283 CCGGACAAATAAAATTACAGGGGAG 59.933 44.000 0.00 0.00 0.00 4.30
156 157 5.449999 CGGACAAATAAAATTACAGGGGAGC 60.450 44.000 0.00 0.00 0.00 4.70
157 158 5.656859 GGACAAATAAAATTACAGGGGAGCT 59.343 40.000 0.00 0.00 0.00 4.09
158 159 6.405842 GGACAAATAAAATTACAGGGGAGCTG 60.406 42.308 0.00 0.00 0.00 4.24
159 160 6.252995 ACAAATAAAATTACAGGGGAGCTGA 58.747 36.000 0.00 0.00 0.00 4.26
160 161 6.723977 ACAAATAAAATTACAGGGGAGCTGAA 59.276 34.615 0.00 0.00 0.00 3.02
161 162 7.093771 ACAAATAAAATTACAGGGGAGCTGAAG 60.094 37.037 0.00 0.00 0.00 3.02
162 163 4.657814 AAAATTACAGGGGAGCTGAAGA 57.342 40.909 0.00 0.00 0.00 2.87
163 164 3.636153 AATTACAGGGGAGCTGAAGAC 57.364 47.619 0.00 0.00 0.00 3.01
164 165 2.024176 TTACAGGGGAGCTGAAGACA 57.976 50.000 0.00 0.00 0.00 3.41
165 166 2.024176 TACAGGGGAGCTGAAGACAA 57.976 50.000 0.00 0.00 0.00 3.18
166 167 1.140312 ACAGGGGAGCTGAAGACAAA 58.860 50.000 0.00 0.00 0.00 2.83
167 168 1.072965 ACAGGGGAGCTGAAGACAAAG 59.927 52.381 0.00 0.00 0.00 2.77
168 169 1.072965 CAGGGGAGCTGAAGACAAAGT 59.927 52.381 0.00 0.00 0.00 2.66
169 170 1.777272 AGGGGAGCTGAAGACAAAGTT 59.223 47.619 0.00 0.00 0.00 2.66
170 171 1.882623 GGGGAGCTGAAGACAAAGTTG 59.117 52.381 0.00 0.00 0.00 3.16
171 172 2.576615 GGGAGCTGAAGACAAAGTTGT 58.423 47.619 0.00 0.00 45.65 3.32
172 173 2.291741 GGGAGCTGAAGACAAAGTTGTG 59.708 50.000 0.42 0.00 42.43 3.33
173 174 3.206150 GGAGCTGAAGACAAAGTTGTGA 58.794 45.455 0.42 0.00 42.43 3.58
174 175 3.249559 GGAGCTGAAGACAAAGTTGTGAG 59.750 47.826 0.42 0.00 42.43 3.51
175 176 4.122776 GAGCTGAAGACAAAGTTGTGAGA 58.877 43.478 0.42 0.00 42.43 3.27
176 177 4.517285 AGCTGAAGACAAAGTTGTGAGAA 58.483 39.130 0.42 0.00 42.43 2.87
177 178 4.574013 AGCTGAAGACAAAGTTGTGAGAAG 59.426 41.667 0.42 0.00 42.43 2.85
178 179 4.260948 GCTGAAGACAAAGTTGTGAGAAGG 60.261 45.833 0.42 0.00 42.43 3.46
179 180 3.627577 TGAAGACAAAGTTGTGAGAAGGC 59.372 43.478 0.42 0.00 42.43 4.35
180 181 3.567478 AGACAAAGTTGTGAGAAGGCT 57.433 42.857 0.42 0.00 42.43 4.58
181 182 3.891049 AGACAAAGTTGTGAGAAGGCTT 58.109 40.909 0.00 0.00 42.43 4.35
182 183 5.036117 AGACAAAGTTGTGAGAAGGCTTA 57.964 39.130 0.00 0.00 42.43 3.09
183 184 5.059833 AGACAAAGTTGTGAGAAGGCTTAG 58.940 41.667 0.00 0.00 42.43 2.18
184 185 4.781934 ACAAAGTTGTGAGAAGGCTTAGT 58.218 39.130 0.00 0.00 40.49 2.24
185 186 5.925509 ACAAAGTTGTGAGAAGGCTTAGTA 58.074 37.500 0.00 0.00 40.49 1.82
186 187 6.354130 ACAAAGTTGTGAGAAGGCTTAGTAA 58.646 36.000 0.00 0.00 40.49 2.24
187 188 6.998673 ACAAAGTTGTGAGAAGGCTTAGTAAT 59.001 34.615 0.00 0.00 40.49 1.89
188 189 7.173390 ACAAAGTTGTGAGAAGGCTTAGTAATC 59.827 37.037 0.00 0.00 40.49 1.75
189 190 6.360370 AGTTGTGAGAAGGCTTAGTAATCA 57.640 37.500 0.00 0.00 0.00 2.57
190 191 6.769512 AGTTGTGAGAAGGCTTAGTAATCAA 58.230 36.000 0.00 0.00 0.00 2.57
191 192 7.398024 AGTTGTGAGAAGGCTTAGTAATCAAT 58.602 34.615 0.00 0.00 0.00 2.57
192 193 8.540388 AGTTGTGAGAAGGCTTAGTAATCAATA 58.460 33.333 0.00 0.00 0.00 1.90
193 194 8.604890 GTTGTGAGAAGGCTTAGTAATCAATAC 58.395 37.037 0.00 0.00 34.52 1.89
194 195 7.847096 TGTGAGAAGGCTTAGTAATCAATACA 58.153 34.615 0.00 0.00 36.94 2.29
195 196 8.318412 TGTGAGAAGGCTTAGTAATCAATACAA 58.682 33.333 0.00 0.00 36.94 2.41
196 197 9.162764 GTGAGAAGGCTTAGTAATCAATACAAA 57.837 33.333 0.00 0.00 36.94 2.83
197 198 9.733556 TGAGAAGGCTTAGTAATCAATACAAAA 57.266 29.630 0.00 0.00 36.94 2.44
198 199 9.989869 GAGAAGGCTTAGTAATCAATACAAAAC 57.010 33.333 0.00 0.00 36.94 2.43
199 200 9.740710 AGAAGGCTTAGTAATCAATACAAAACT 57.259 29.630 0.00 0.00 36.94 2.66
215 216 9.953565 AATACAAAACTTATGCTCTTAGTACCA 57.046 29.630 0.00 0.00 0.00 3.25
216 217 9.953565 ATACAAAACTTATGCTCTTAGTACCAA 57.046 29.630 0.00 0.00 0.00 3.67
217 218 8.095937 ACAAAACTTATGCTCTTAGTACCAAC 57.904 34.615 0.00 0.00 0.00 3.77
218 219 6.963049 AAACTTATGCTCTTAGTACCAACG 57.037 37.500 0.00 0.00 0.00 4.10
219 220 5.656213 ACTTATGCTCTTAGTACCAACGT 57.344 39.130 0.00 0.00 0.00 3.99
220 221 5.648572 ACTTATGCTCTTAGTACCAACGTC 58.351 41.667 0.00 0.00 0.00 4.34
221 222 2.624316 TGCTCTTAGTACCAACGTCG 57.376 50.000 0.00 0.00 0.00 5.12
222 223 2.153645 TGCTCTTAGTACCAACGTCGA 58.846 47.619 0.00 0.00 0.00 4.20
223 224 2.751259 TGCTCTTAGTACCAACGTCGAT 59.249 45.455 0.00 0.00 0.00 3.59
224 225 3.181503 TGCTCTTAGTACCAACGTCGATC 60.182 47.826 0.00 0.00 0.00 3.69
225 226 3.791455 GCTCTTAGTACCAACGTCGATCC 60.791 52.174 0.00 0.00 0.00 3.36
226 227 3.614092 TCTTAGTACCAACGTCGATCCT 58.386 45.455 0.00 0.00 0.00 3.24
227 228 4.012374 TCTTAGTACCAACGTCGATCCTT 58.988 43.478 0.00 0.00 0.00 3.36
228 229 2.935481 AGTACCAACGTCGATCCTTC 57.065 50.000 0.00 0.00 0.00 3.46
229 230 2.444421 AGTACCAACGTCGATCCTTCT 58.556 47.619 0.00 0.00 0.00 2.85
230 231 2.824341 AGTACCAACGTCGATCCTTCTT 59.176 45.455 0.00 0.00 0.00 2.52
231 232 2.365408 ACCAACGTCGATCCTTCTTC 57.635 50.000 0.00 0.00 0.00 2.87
232 233 1.269166 CCAACGTCGATCCTTCTTCG 58.731 55.000 0.00 0.00 37.94 3.79
233 234 1.135489 CCAACGTCGATCCTTCTTCGA 60.135 52.381 0.00 0.00 42.87 3.71
234 235 2.177977 CAACGTCGATCCTTCTTCGAG 58.822 52.381 0.00 0.00 45.41 4.04
235 236 3.535691 CGTCGATCCTTCTTCGAGG 57.464 57.895 0.00 0.00 45.41 4.63
245 246 4.072131 TCCTTCTTCGAGGAAACATTTGG 58.928 43.478 11.41 7.88 42.75 3.28
246 247 3.821033 CCTTCTTCGAGGAAACATTTGGT 59.179 43.478 11.41 0.00 39.25 3.67
247 248 4.278419 CCTTCTTCGAGGAAACATTTGGTT 59.722 41.667 11.41 0.00 42.98 3.67
248 249 5.432885 TTCTTCGAGGAAACATTTGGTTC 57.567 39.130 7.61 0.00 39.29 3.62
249 250 4.456535 TCTTCGAGGAAACATTTGGTTCA 58.543 39.130 10.31 0.00 43.30 3.18
250 251 5.070001 TCTTCGAGGAAACATTTGGTTCAT 58.930 37.500 10.31 2.88 43.30 2.57
251 252 6.234920 TCTTCGAGGAAACATTTGGTTCATA 58.765 36.000 10.31 0.00 43.30 2.15
252 253 6.371548 TCTTCGAGGAAACATTTGGTTCATAG 59.628 38.462 10.31 4.01 43.30 2.23
253 254 4.394920 TCGAGGAAACATTTGGTTCATAGC 59.605 41.667 10.31 0.00 43.30 2.97
254 255 4.438744 CGAGGAAACATTTGGTTCATAGCC 60.439 45.833 10.31 0.00 43.30 3.93
255 256 4.415596 AGGAAACATTTGGTTCATAGCCA 58.584 39.130 10.31 0.00 43.30 4.75
256 257 4.837860 AGGAAACATTTGGTTCATAGCCAA 59.162 37.500 10.31 0.00 43.30 4.52
257 258 5.484998 AGGAAACATTTGGTTCATAGCCAAT 59.515 36.000 10.31 0.00 44.44 3.16
258 259 5.812127 GGAAACATTTGGTTCATAGCCAATC 59.188 40.000 10.31 0.00 44.44 2.67
259 260 4.637483 ACATTTGGTTCATAGCCAATCG 57.363 40.909 0.00 0.00 44.44 3.34
260 261 4.016444 ACATTTGGTTCATAGCCAATCGT 58.984 39.130 0.00 0.00 44.44 3.73
261 262 4.142403 ACATTTGGTTCATAGCCAATCGTG 60.142 41.667 0.00 0.00 44.44 4.35
262 263 2.779755 TGGTTCATAGCCAATCGTGT 57.220 45.000 0.00 0.00 32.29 4.49
263 264 2.355197 TGGTTCATAGCCAATCGTGTG 58.645 47.619 0.00 0.00 32.29 3.82
264 265 2.027653 TGGTTCATAGCCAATCGTGTGA 60.028 45.455 0.00 0.00 32.29 3.58
265 266 3.206150 GGTTCATAGCCAATCGTGTGAT 58.794 45.455 0.00 0.00 35.98 3.06
266 267 4.141824 TGGTTCATAGCCAATCGTGTGATA 60.142 41.667 0.00 0.00 33.40 2.15
267 268 4.814234 GGTTCATAGCCAATCGTGTGATAA 59.186 41.667 0.00 0.00 33.40 1.75
268 269 5.295787 GGTTCATAGCCAATCGTGTGATAAA 59.704 40.000 0.00 0.00 33.40 1.40
269 270 6.183360 GGTTCATAGCCAATCGTGTGATAAAA 60.183 38.462 0.00 0.00 33.40 1.52
270 271 7.417612 GTTCATAGCCAATCGTGTGATAAAAT 58.582 34.615 0.00 0.00 33.40 1.82
271 272 7.566760 TCATAGCCAATCGTGTGATAAAATT 57.433 32.000 0.00 0.00 33.40 1.82
272 273 7.416817 TCATAGCCAATCGTGTGATAAAATTG 58.583 34.615 0.00 0.00 33.40 2.32
273 274 4.423732 AGCCAATCGTGTGATAAAATTGC 58.576 39.130 0.00 0.00 33.40 3.56
274 275 4.082300 AGCCAATCGTGTGATAAAATTGCA 60.082 37.500 0.00 0.00 33.40 4.08
275 276 4.031652 GCCAATCGTGTGATAAAATTGCAC 59.968 41.667 0.00 0.00 33.40 4.57
276 277 4.562394 CCAATCGTGTGATAAAATTGCACC 59.438 41.667 0.00 0.00 33.40 5.01
277 278 5.159925 CAATCGTGTGATAAAATTGCACCA 58.840 37.500 0.00 0.00 33.40 4.17
278 279 4.837896 TCGTGTGATAAAATTGCACCAA 57.162 36.364 0.00 0.00 0.00 3.67
279 280 4.541779 TCGTGTGATAAAATTGCACCAAC 58.458 39.130 0.00 0.00 0.00 3.77
280 281 3.360463 CGTGTGATAAAATTGCACCAACG 59.640 43.478 0.00 0.00 0.00 4.10
281 282 4.295051 GTGTGATAAAATTGCACCAACGT 58.705 39.130 0.00 0.00 0.00 3.99
282 283 4.148000 GTGTGATAAAATTGCACCAACGTG 59.852 41.667 0.00 0.00 43.35 4.49
283 284 4.036852 TGTGATAAAATTGCACCAACGTGA 59.963 37.500 0.00 0.00 43.14 4.35
284 285 4.979197 GTGATAAAATTGCACCAACGTGAA 59.021 37.500 0.00 0.00 43.14 3.18
285 286 5.460419 GTGATAAAATTGCACCAACGTGAAA 59.540 36.000 0.00 0.00 41.94 2.69
286 287 5.689514 TGATAAAATTGCACCAACGTGAAAG 59.310 36.000 0.00 0.00 41.00 2.62
287 288 3.791973 AAATTGCACCAACGTGAAAGA 57.208 38.095 0.00 0.00 41.00 2.52
288 289 4.320608 AAATTGCACCAACGTGAAAGAT 57.679 36.364 0.00 0.00 41.00 2.40
289 290 2.772568 TTGCACCAACGTGAAAGATG 57.227 45.000 0.00 0.00 43.14 2.90
290 291 1.960417 TGCACCAACGTGAAAGATGA 58.040 45.000 0.00 0.00 43.14 2.92
291 292 1.601903 TGCACCAACGTGAAAGATGAC 59.398 47.619 0.00 0.00 43.14 3.06
292 293 1.873591 GCACCAACGTGAAAGATGACT 59.126 47.619 0.00 0.00 43.14 3.41
293 294 2.349817 GCACCAACGTGAAAGATGACTG 60.350 50.000 0.00 0.00 43.14 3.51
294 295 1.873591 ACCAACGTGAAAGATGACTGC 59.126 47.619 0.00 0.00 0.00 4.40
295 296 1.136252 CCAACGTGAAAGATGACTGCG 60.136 52.381 0.00 0.00 0.00 5.18
296 297 1.526887 CAACGTGAAAGATGACTGCGT 59.473 47.619 0.00 0.00 0.00 5.24
297 298 1.419374 ACGTGAAAGATGACTGCGTC 58.581 50.000 0.00 2.32 0.00 5.19
298 299 1.000163 ACGTGAAAGATGACTGCGTCT 60.000 47.619 9.49 0.00 42.12 4.18
299 300 1.651138 CGTGAAAGATGACTGCGTCTC 59.349 52.381 9.49 5.58 39.44 3.36
300 301 1.996191 GTGAAAGATGACTGCGTCTCC 59.004 52.381 9.49 2.88 39.44 3.71
301 302 1.618343 TGAAAGATGACTGCGTCTCCA 59.382 47.619 9.49 0.00 39.44 3.86
302 303 2.037121 TGAAAGATGACTGCGTCTCCAA 59.963 45.455 9.49 0.00 39.44 3.53
303 304 2.086054 AAGATGACTGCGTCTCCAAC 57.914 50.000 9.49 0.00 39.44 3.77
311 312 3.725819 CGTCTCCAACGCAACCAA 58.274 55.556 0.00 0.00 45.76 3.67
312 313 1.569493 CGTCTCCAACGCAACCAAG 59.431 57.895 0.00 0.00 45.76 3.61
313 314 1.841663 CGTCTCCAACGCAACCAAGG 61.842 60.000 0.00 0.00 45.76 3.61
314 315 0.818040 GTCTCCAACGCAACCAAGGT 60.818 55.000 0.00 0.00 0.00 3.50
315 316 0.817634 TCTCCAACGCAACCAAGGTG 60.818 55.000 0.00 0.00 0.00 4.00
316 317 0.817634 CTCCAACGCAACCAAGGTGA 60.818 55.000 0.00 0.00 0.00 4.02
317 318 0.394488 TCCAACGCAACCAAGGTGAA 60.394 50.000 0.00 0.00 0.00 3.18
318 319 0.248866 CCAACGCAACCAAGGTGAAC 60.249 55.000 0.00 0.00 0.00 3.18
319 320 0.738389 CAACGCAACCAAGGTGAACT 59.262 50.000 0.00 0.00 0.00 3.01
320 321 0.738389 AACGCAACCAAGGTGAACTG 59.262 50.000 0.00 0.00 0.00 3.16
321 322 0.107410 ACGCAACCAAGGTGAACTGA 60.107 50.000 0.00 0.00 0.00 3.41
322 323 1.238439 CGCAACCAAGGTGAACTGAT 58.762 50.000 0.00 0.00 0.00 2.90
323 324 1.069022 CGCAACCAAGGTGAACTGATG 60.069 52.381 0.00 0.00 0.00 3.07
324 325 2.229792 GCAACCAAGGTGAACTGATGA 58.770 47.619 0.00 0.00 0.00 2.92
325 326 2.622942 GCAACCAAGGTGAACTGATGAA 59.377 45.455 0.00 0.00 0.00 2.57
326 327 3.304928 GCAACCAAGGTGAACTGATGAAG 60.305 47.826 0.00 0.00 0.00 3.02
327 328 3.146104 ACCAAGGTGAACTGATGAAGG 57.854 47.619 0.00 0.00 0.00 3.46
328 329 2.711009 ACCAAGGTGAACTGATGAAGGA 59.289 45.455 0.00 0.00 0.00 3.36
329 330 3.331889 ACCAAGGTGAACTGATGAAGGAT 59.668 43.478 0.00 0.00 0.00 3.24
330 331 4.536090 ACCAAGGTGAACTGATGAAGGATA 59.464 41.667 0.00 0.00 0.00 2.59
331 332 5.192522 ACCAAGGTGAACTGATGAAGGATAT 59.807 40.000 0.00 0.00 0.00 1.63
332 333 5.762218 CCAAGGTGAACTGATGAAGGATATC 59.238 44.000 0.00 0.00 0.00 1.63
333 334 6.351711 CAAGGTGAACTGATGAAGGATATCA 58.648 40.000 4.83 0.00 33.76 2.15
334 335 6.760440 AGGTGAACTGATGAAGGATATCAT 57.240 37.500 4.83 0.00 42.62 2.45
343 344 5.919348 ATGAAGGATATCATCTTGTGGGT 57.081 39.130 4.83 0.00 35.07 4.51
345 346 6.823286 TGAAGGATATCATCTTGTGGGTAA 57.177 37.500 4.83 0.00 0.00 2.85
346 347 6.591935 TGAAGGATATCATCTTGTGGGTAAC 58.408 40.000 4.83 0.00 0.00 2.50
347 348 6.157820 TGAAGGATATCATCTTGTGGGTAACA 59.842 38.462 4.83 0.00 36.85 2.41
348 349 6.575244 AGGATATCATCTTGTGGGTAACAA 57.425 37.500 4.83 0.00 46.66 2.83
357 358 1.953686 TGTGGGTAACAAGCAAAGAGC 59.046 47.619 0.00 0.00 37.41 4.09
358 359 1.953686 GTGGGTAACAAGCAAAGAGCA 59.046 47.619 0.00 0.00 43.34 4.26
359 360 1.953686 TGGGTAACAAGCAAAGAGCAC 59.046 47.619 0.00 0.00 43.34 4.40
360 361 2.230660 GGGTAACAAGCAAAGAGCACT 58.769 47.619 0.00 0.00 43.34 4.40
361 362 2.030805 GGGTAACAAGCAAAGAGCACTG 60.031 50.000 0.00 0.00 43.34 3.66
362 363 4.303805 GGGTAACAAGCAAAGAGCACTGA 61.304 47.826 0.00 0.00 43.34 3.41
363 364 5.581867 GGGTAACAAGCAAAGAGCACTGAT 61.582 45.833 0.00 0.00 43.34 2.90
364 365 7.553170 GGGTAACAAGCAAAGAGCACTGATG 62.553 48.000 0.00 0.00 43.34 3.07
499 501 0.826062 CCAACGGGTAAGACGGGTAT 59.174 55.000 0.00 0.00 35.23 2.73
518 520 3.814504 ATGGGTATGGGAAGGCAATAG 57.185 47.619 0.00 0.00 0.00 1.73
543 545 2.642700 CGCAAACCCTCAAACCCG 59.357 61.111 0.00 0.00 0.00 5.28
617 620 2.130272 AAAACCCTAAGCTAGCAGCC 57.870 50.000 18.83 0.00 43.77 4.85
675 701 1.309499 CCAATTCTAAACCGCGCCCA 61.309 55.000 0.00 0.00 0.00 5.36
698 724 1.203300 CCCCACCCCTTCCAATTCTTT 60.203 52.381 0.00 0.00 0.00 2.52
831 878 1.386525 CCAGCCGCCGTAGTTACCTA 61.387 60.000 0.00 0.00 0.00 3.08
843 890 5.163258 CCGTAGTTACCTACTCCTTCTCCTA 60.163 48.000 0.00 0.00 41.24 2.94
914 961 4.410400 CACCACCGGGCCTTCCTC 62.410 72.222 6.32 0.00 37.90 3.71
1081 1135 4.838152 CAGGTCCCGTGGATGGCG 62.838 72.222 0.00 0.00 32.73 5.69
1102 1156 1.747355 TCGACGGGAATAGTTCTCACC 59.253 52.381 0.00 0.00 0.00 4.02
1115 1169 1.183030 TCTCACCGGACGACATGGTT 61.183 55.000 9.46 0.00 32.48 3.67
1134 1188 3.128589 GGTTGTCAAAGTGCACTTCTTCA 59.871 43.478 31.20 24.13 34.61 3.02
1149 1209 0.250234 CTTCATCCTCACGCCTCCAA 59.750 55.000 0.00 0.00 0.00 3.53
1206 1272 2.813908 CGCGGTGGCTACAAGGTC 60.814 66.667 1.52 0.00 36.88 3.85
1237 1303 2.345991 GCCGTGGCTCCACTACAA 59.654 61.111 16.15 0.00 44.16 2.41
1280 1346 2.125952 GGCATTTGCTCCGCCAAC 60.126 61.111 2.12 0.00 45.52 3.77
1284 1350 0.039617 CATTTGCTCCGCCAACGAAA 60.040 50.000 0.00 0.00 43.93 3.46
1286 1352 0.671251 TTTGCTCCGCCAACGAAAAT 59.329 45.000 0.00 0.00 43.93 1.82
1311 1377 7.278875 TGGCAAAAATTTGGTGAATAGTTCTT 58.721 30.769 7.89 0.00 38.57 2.52
1342 1409 9.995003 TCACAATGGCACTTTCTTATTTTATTT 57.005 25.926 0.00 0.00 0.00 1.40
1365 1432 3.853831 TGCATGAATGTGTTGATGACC 57.146 42.857 0.00 0.00 31.50 4.02
1372 1439 5.351458 TGAATGTGTTGATGACCGATCTAG 58.649 41.667 0.00 0.00 31.55 2.43
1374 1441 4.110036 TGTGTTGATGACCGATCTAGTG 57.890 45.455 0.00 0.00 31.55 2.74
1379 1446 7.148641 GTGTTGATGACCGATCTAGTGATAAT 58.851 38.462 0.00 0.00 32.19 1.28
1406 1473 8.996271 TGTATATGATGCATGAGTTGATTCTTC 58.004 33.333 2.46 0.00 0.00 2.87
1451 1518 6.351711 AGTCAATATTGAGCATGCTCTTGTA 58.648 36.000 39.46 29.36 43.12 2.41
1455 1522 9.511272 TCAATATTGAGCATGCTCTTGTATATT 57.489 29.630 39.46 32.62 43.12 1.28
1511 1581 7.908082 TCTTGTTAAAACGAGCATATAACATGC 59.092 33.333 5.37 0.95 44.85 4.06
1573 1643 5.654317 TTTTGCATAACACATGCTGTTTG 57.346 34.783 15.58 13.98 40.45 2.93
1586 1656 3.472652 TGCTGTTTGTGTAGTTTCCGAT 58.527 40.909 0.00 0.00 0.00 4.18
1605 1675 6.851609 TCCGATTAGATGATTTGTTTTGTGG 58.148 36.000 0.00 0.00 0.00 4.17
1606 1676 5.516339 CCGATTAGATGATTTGTTTTGTGGC 59.484 40.000 0.00 0.00 0.00 5.01
1609 1679 7.253850 CGATTAGATGATTTGTTTTGTGGCATG 60.254 37.037 0.00 0.00 0.00 4.06
1633 1703 7.950512 TGTACAAGTTTCCAATTCATTGATGT 58.049 30.769 0.00 0.00 40.14 3.06
1742 1827 7.393234 ACAATTTATGTTTCCGATGGAGAAGAA 59.607 33.333 0.00 0.00 40.06 2.52
1752 1837 3.493873 CGATGGAGAAGAAGATGATGCCA 60.494 47.826 0.00 0.00 0.00 4.92
1818 1906 3.006859 GGTTTGGTTGGAAATGGAGAAGG 59.993 47.826 0.00 0.00 0.00 3.46
1888 1976 0.743688 CTCACCACAGGATCGAGGAG 59.256 60.000 0.00 0.00 0.00 3.69
1950 2038 5.163612 ACTCAAAAGAAGTTGAAGACCAAGC 60.164 40.000 0.00 0.00 37.08 4.01
2025 2113 0.743688 AGTGAGCATGGAGAGCTACG 59.256 55.000 0.00 0.00 43.58 3.51
2072 2160 1.541588 GAGCTTGGGAACATGTTGGTC 59.458 52.381 17.58 12.16 42.32 4.02
2075 2163 2.365293 GCTTGGGAACATGTTGGTCTTT 59.635 45.455 17.58 0.00 42.32 2.52
2077 2165 2.226330 TGGGAACATGTTGGTCTTTCG 58.774 47.619 17.58 0.00 33.75 3.46
2131 2219 4.280677 TGGTTTTAGGAGATTTGTTGCTGG 59.719 41.667 0.00 0.00 0.00 4.85
2272 2401 8.735315 TCTTTTGTTTTGTAGAACTGACATTGA 58.265 29.630 0.00 0.00 0.00 2.57
2471 2604 3.622612 TGCATTCTCATGTACATGTTCGG 59.377 43.478 30.03 19.60 39.72 4.30
2472 2605 3.546815 GCATTCTCATGTACATGTTCGGC 60.547 47.826 30.03 23.49 39.72 5.54
2581 2741 5.362430 CAGAAGTTATAGCTGAGAACCTCCT 59.638 44.000 0.00 0.00 28.85 3.69
2595 2755 0.679505 CCTCCTTGAGTCGTTGGTCA 59.320 55.000 0.00 0.00 0.00 4.02
2629 2789 3.126001 TGAAAAGCTCTTGACCGTGAT 57.874 42.857 0.00 0.00 0.00 3.06
2847 3010 3.682999 GCCTCACCCAAAAGGATAGAGAC 60.683 52.174 0.00 0.00 39.89 3.36
2863 3026 4.000331 AGAGACATTTGAGGATATGGCG 58.000 45.455 0.00 0.00 34.90 5.69
2872 3035 7.387948 ACATTTGAGGATATGGCGAAGTATAAC 59.612 37.037 0.00 0.00 0.00 1.89
3019 3183 5.223382 CAATATGAGTGGCTACCTAGTTCG 58.777 45.833 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.082313 CCCTCCATTTTTATTTACTCTGCATAT 57.918 33.333 0.00 0.00 0.00 1.78
32 33 7.014230 GCCCTCCATTTTTATTTACTCTGCATA 59.986 37.037 0.00 0.00 0.00 3.14
33 34 6.183360 GCCCTCCATTTTTATTTACTCTGCAT 60.183 38.462 0.00 0.00 0.00 3.96
34 35 5.127031 GCCCTCCATTTTTATTTACTCTGCA 59.873 40.000 0.00 0.00 0.00 4.41
35 36 5.360999 AGCCCTCCATTTTTATTTACTCTGC 59.639 40.000 0.00 0.00 0.00 4.26
36 37 7.775561 AGTAGCCCTCCATTTTTATTTACTCTG 59.224 37.037 0.00 0.00 0.00 3.35
37 38 7.873195 AGTAGCCCTCCATTTTTATTTACTCT 58.127 34.615 0.00 0.00 0.00 3.24
38 39 9.053840 GTAGTAGCCCTCCATTTTTATTTACTC 57.946 37.037 0.00 0.00 0.00 2.59
39 40 7.713942 CGTAGTAGCCCTCCATTTTTATTTACT 59.286 37.037 0.00 0.00 0.00 2.24
40 41 7.496920 ACGTAGTAGCCCTCCATTTTTATTTAC 59.503 37.037 0.00 0.00 41.94 2.01
41 42 7.567458 ACGTAGTAGCCCTCCATTTTTATTTA 58.433 34.615 0.00 0.00 41.94 1.40
42 43 6.420638 ACGTAGTAGCCCTCCATTTTTATTT 58.579 36.000 0.00 0.00 41.94 1.40
43 44 5.997843 ACGTAGTAGCCCTCCATTTTTATT 58.002 37.500 0.00 0.00 41.94 1.40
44 45 5.625568 ACGTAGTAGCCCTCCATTTTTAT 57.374 39.130 0.00 0.00 41.94 1.40
45 46 5.046448 TGAACGTAGTAGCCCTCCATTTTTA 60.046 40.000 0.00 0.00 45.00 1.52
46 47 3.994931 ACGTAGTAGCCCTCCATTTTT 57.005 42.857 0.00 0.00 41.94 1.94
47 48 3.262405 TGAACGTAGTAGCCCTCCATTTT 59.738 43.478 0.00 0.00 45.00 1.82
48 49 2.835764 TGAACGTAGTAGCCCTCCATTT 59.164 45.455 0.00 0.00 45.00 2.32
49 50 2.463752 TGAACGTAGTAGCCCTCCATT 58.536 47.619 0.00 0.00 45.00 3.16
50 51 2.154567 TGAACGTAGTAGCCCTCCAT 57.845 50.000 0.00 0.00 45.00 3.41
51 52 2.029623 GATGAACGTAGTAGCCCTCCA 58.970 52.381 0.00 0.00 45.00 3.86
52 53 1.340568 GGATGAACGTAGTAGCCCTCC 59.659 57.143 0.00 0.00 45.00 4.30
53 54 1.001597 CGGATGAACGTAGTAGCCCTC 60.002 57.143 0.00 0.00 45.00 4.30
54 55 1.030457 CGGATGAACGTAGTAGCCCT 58.970 55.000 0.00 0.00 45.00 5.19
55 56 0.031721 CCGGATGAACGTAGTAGCCC 59.968 60.000 0.00 0.00 45.00 5.19
56 57 0.031721 CCCGGATGAACGTAGTAGCC 59.968 60.000 0.73 0.00 45.00 3.93
57 58 0.743097 ACCCGGATGAACGTAGTAGC 59.257 55.000 0.73 0.00 45.00 3.58
58 59 3.515330 AAACCCGGATGAACGTAGTAG 57.485 47.619 0.73 0.00 45.00 2.57
59 60 3.959535 AAAACCCGGATGAACGTAGTA 57.040 42.857 0.73 0.00 45.00 1.82
61 62 4.248058 ACTAAAAACCCGGATGAACGTAG 58.752 43.478 0.73 0.00 0.00 3.51
62 63 4.244862 GACTAAAAACCCGGATGAACGTA 58.755 43.478 0.73 0.00 0.00 3.57
63 64 3.069289 GACTAAAAACCCGGATGAACGT 58.931 45.455 0.73 0.00 0.00 3.99
64 65 2.417586 GGACTAAAAACCCGGATGAACG 59.582 50.000 0.73 0.00 0.00 3.95
65 66 3.189910 GTGGACTAAAAACCCGGATGAAC 59.810 47.826 0.73 0.00 0.00 3.18
66 67 3.181442 TGTGGACTAAAAACCCGGATGAA 60.181 43.478 0.73 0.00 0.00 2.57
67 68 2.372504 TGTGGACTAAAAACCCGGATGA 59.627 45.455 0.73 0.00 0.00 2.92
68 69 2.486592 GTGTGGACTAAAAACCCGGATG 59.513 50.000 0.73 0.00 0.00 3.51
69 70 2.553685 GGTGTGGACTAAAAACCCGGAT 60.554 50.000 0.73 0.00 0.00 4.18
70 71 1.202794 GGTGTGGACTAAAAACCCGGA 60.203 52.381 0.73 0.00 0.00 5.14
71 72 1.241165 GGTGTGGACTAAAAACCCGG 58.759 55.000 0.00 0.00 0.00 5.73
72 73 1.970092 TGGTGTGGACTAAAAACCCG 58.030 50.000 0.00 0.00 0.00 5.28
73 74 4.948341 AAATGGTGTGGACTAAAAACCC 57.052 40.909 0.00 0.00 0.00 4.11
99 100 9.520515 AACTAAATATGTGGTCAGACTTTGATT 57.479 29.630 0.00 0.00 38.29 2.57
105 106 9.765795 GCTATTAACTAAATATGTGGTCAGACT 57.234 33.333 0.00 0.00 29.63 3.24
106 107 8.989980 GGCTATTAACTAAATATGTGGTCAGAC 58.010 37.037 0.00 0.00 29.63 3.51
107 108 7.870954 CGGCTATTAACTAAATATGTGGTCAGA 59.129 37.037 0.00 0.00 29.63 3.27
108 109 7.117812 CCGGCTATTAACTAAATATGTGGTCAG 59.882 40.741 0.00 0.00 29.63 3.51
109 110 6.932400 CCGGCTATTAACTAAATATGTGGTCA 59.068 38.462 0.00 0.00 29.63 4.02
110 111 7.117379 GTCCGGCTATTAACTAAATATGTGGTC 59.883 40.741 0.00 0.00 29.63 4.02
111 112 6.932960 GTCCGGCTATTAACTAAATATGTGGT 59.067 38.462 0.00 0.00 29.63 4.16
112 113 6.932400 TGTCCGGCTATTAACTAAATATGTGG 59.068 38.462 0.00 0.00 29.63 4.17
113 114 7.956420 TGTCCGGCTATTAACTAAATATGTG 57.044 36.000 0.00 0.00 29.63 3.21
114 115 8.967664 TTTGTCCGGCTATTAACTAAATATGT 57.032 30.769 0.00 0.00 29.63 2.29
125 126 8.842280 CCTGTAATTTTATTTGTCCGGCTATTA 58.158 33.333 0.00 0.00 0.00 0.98
126 127 7.201875 CCCTGTAATTTTATTTGTCCGGCTATT 60.202 37.037 0.00 0.00 0.00 1.73
127 128 6.264518 CCCTGTAATTTTATTTGTCCGGCTAT 59.735 38.462 0.00 0.00 0.00 2.97
128 129 5.591067 CCCTGTAATTTTATTTGTCCGGCTA 59.409 40.000 0.00 0.00 0.00 3.93
129 130 4.401202 CCCTGTAATTTTATTTGTCCGGCT 59.599 41.667 0.00 0.00 0.00 5.52
130 131 4.440940 CCCCTGTAATTTTATTTGTCCGGC 60.441 45.833 0.00 0.00 0.00 6.13
131 132 4.951094 TCCCCTGTAATTTTATTTGTCCGG 59.049 41.667 0.00 0.00 0.00 5.14
132 133 5.449999 GCTCCCCTGTAATTTTATTTGTCCG 60.450 44.000 0.00 0.00 0.00 4.79
133 134 5.656859 AGCTCCCCTGTAATTTTATTTGTCC 59.343 40.000 0.00 0.00 0.00 4.02
134 135 6.377146 TCAGCTCCCCTGTAATTTTATTTGTC 59.623 38.462 0.00 0.00 42.38 3.18
135 136 6.252995 TCAGCTCCCCTGTAATTTTATTTGT 58.747 36.000 0.00 0.00 42.38 2.83
136 137 6.773976 TCAGCTCCCCTGTAATTTTATTTG 57.226 37.500 0.00 0.00 42.38 2.32
137 138 7.122799 GTCTTCAGCTCCCCTGTAATTTTATTT 59.877 37.037 0.00 0.00 42.38 1.40
138 139 6.603599 GTCTTCAGCTCCCCTGTAATTTTATT 59.396 38.462 0.00 0.00 42.38 1.40
139 140 6.122964 GTCTTCAGCTCCCCTGTAATTTTAT 58.877 40.000 0.00 0.00 42.38 1.40
140 141 5.013704 TGTCTTCAGCTCCCCTGTAATTTTA 59.986 40.000 0.00 0.00 42.38 1.52
141 142 4.202567 TGTCTTCAGCTCCCCTGTAATTTT 60.203 41.667 0.00 0.00 42.38 1.82
142 143 3.330701 TGTCTTCAGCTCCCCTGTAATTT 59.669 43.478 0.00 0.00 42.38 1.82
143 144 2.912956 TGTCTTCAGCTCCCCTGTAATT 59.087 45.455 0.00 0.00 42.38 1.40
144 145 2.551270 TGTCTTCAGCTCCCCTGTAAT 58.449 47.619 0.00 0.00 42.38 1.89
145 146 2.024176 TGTCTTCAGCTCCCCTGTAA 57.976 50.000 0.00 0.00 42.38 2.41
146 147 2.024176 TTGTCTTCAGCTCCCCTGTA 57.976 50.000 0.00 0.00 42.38 2.74
147 148 1.072965 CTTTGTCTTCAGCTCCCCTGT 59.927 52.381 0.00 0.00 42.38 4.00
148 149 1.072965 ACTTTGTCTTCAGCTCCCCTG 59.927 52.381 0.00 0.00 43.17 4.45
149 150 1.439543 ACTTTGTCTTCAGCTCCCCT 58.560 50.000 0.00 0.00 0.00 4.79
150 151 1.882623 CAACTTTGTCTTCAGCTCCCC 59.117 52.381 0.00 0.00 0.00 4.81
151 152 2.291741 CACAACTTTGTCTTCAGCTCCC 59.708 50.000 0.00 0.00 39.91 4.30
152 153 3.206150 TCACAACTTTGTCTTCAGCTCC 58.794 45.455 0.00 0.00 39.91 4.70
153 154 4.122776 TCTCACAACTTTGTCTTCAGCTC 58.877 43.478 0.00 0.00 39.91 4.09
154 155 4.142609 TCTCACAACTTTGTCTTCAGCT 57.857 40.909 0.00 0.00 39.91 4.24
155 156 4.260948 CCTTCTCACAACTTTGTCTTCAGC 60.261 45.833 0.00 0.00 39.91 4.26
156 157 4.260948 GCCTTCTCACAACTTTGTCTTCAG 60.261 45.833 0.00 0.00 39.91 3.02
157 158 3.627577 GCCTTCTCACAACTTTGTCTTCA 59.372 43.478 0.00 0.00 39.91 3.02
158 159 3.879892 AGCCTTCTCACAACTTTGTCTTC 59.120 43.478 0.00 0.00 39.91 2.87
159 160 3.891049 AGCCTTCTCACAACTTTGTCTT 58.109 40.909 0.00 0.00 39.91 3.01
160 161 3.567478 AGCCTTCTCACAACTTTGTCT 57.433 42.857 0.00 0.00 39.91 3.41
161 162 4.816925 ACTAAGCCTTCTCACAACTTTGTC 59.183 41.667 0.00 0.00 39.91 3.18
162 163 4.781934 ACTAAGCCTTCTCACAACTTTGT 58.218 39.130 0.00 0.00 43.36 2.83
163 164 6.861065 TTACTAAGCCTTCTCACAACTTTG 57.139 37.500 0.00 0.00 0.00 2.77
164 165 7.224297 TGATTACTAAGCCTTCTCACAACTTT 58.776 34.615 0.00 0.00 0.00 2.66
165 166 6.769512 TGATTACTAAGCCTTCTCACAACTT 58.230 36.000 0.00 0.00 0.00 2.66
166 167 6.360370 TGATTACTAAGCCTTCTCACAACT 57.640 37.500 0.00 0.00 0.00 3.16
167 168 7.617041 ATTGATTACTAAGCCTTCTCACAAC 57.383 36.000 0.00 0.00 0.00 3.32
168 169 8.318412 TGTATTGATTACTAAGCCTTCTCACAA 58.682 33.333 0.00 0.00 0.00 3.33
169 170 7.847096 TGTATTGATTACTAAGCCTTCTCACA 58.153 34.615 0.00 0.00 0.00 3.58
170 171 8.718102 TTGTATTGATTACTAAGCCTTCTCAC 57.282 34.615 0.00 0.00 0.00 3.51
171 172 9.733556 TTTTGTATTGATTACTAAGCCTTCTCA 57.266 29.630 0.00 0.00 29.32 3.27
172 173 9.989869 GTTTTGTATTGATTACTAAGCCTTCTC 57.010 33.333 0.00 0.00 29.32 2.87
173 174 9.740710 AGTTTTGTATTGATTACTAAGCCTTCT 57.259 29.630 0.00 0.00 30.81 2.85
189 190 9.953565 TGGTACTAAGAGCATAAGTTTTGTATT 57.046 29.630 0.00 0.00 0.00 1.89
190 191 9.953565 TTGGTACTAAGAGCATAAGTTTTGTAT 57.046 29.630 0.00 0.00 0.00 2.29
191 192 9.211485 GTTGGTACTAAGAGCATAAGTTTTGTA 57.789 33.333 0.00 0.00 0.00 2.41
192 193 7.095355 CGTTGGTACTAAGAGCATAAGTTTTGT 60.095 37.037 0.00 0.00 0.00 2.83
193 194 7.095355 ACGTTGGTACTAAGAGCATAAGTTTTG 60.095 37.037 0.00 0.00 0.00 2.44
194 195 6.932960 ACGTTGGTACTAAGAGCATAAGTTTT 59.067 34.615 0.00 0.00 0.00 2.43
195 196 6.461640 ACGTTGGTACTAAGAGCATAAGTTT 58.538 36.000 0.00 0.00 0.00 2.66
196 197 6.034161 ACGTTGGTACTAAGAGCATAAGTT 57.966 37.500 0.00 0.00 0.00 2.66
197 198 5.648572 GACGTTGGTACTAAGAGCATAAGT 58.351 41.667 0.00 0.00 0.00 2.24
198 199 4.733887 CGACGTTGGTACTAAGAGCATAAG 59.266 45.833 0.00 0.00 0.00 1.73
199 200 4.395854 TCGACGTTGGTACTAAGAGCATAA 59.604 41.667 2.20 0.00 0.00 1.90
200 201 3.940852 TCGACGTTGGTACTAAGAGCATA 59.059 43.478 2.20 0.00 0.00 3.14
201 202 2.751259 TCGACGTTGGTACTAAGAGCAT 59.249 45.455 2.20 0.00 0.00 3.79
202 203 2.153645 TCGACGTTGGTACTAAGAGCA 58.846 47.619 2.20 0.00 0.00 4.26
203 204 2.907910 TCGACGTTGGTACTAAGAGC 57.092 50.000 2.20 0.00 0.00 4.09
204 205 3.626670 AGGATCGACGTTGGTACTAAGAG 59.373 47.826 0.00 0.00 0.00 2.85
205 206 3.614092 AGGATCGACGTTGGTACTAAGA 58.386 45.455 0.00 0.00 0.00 2.10
206 207 4.096081 AGAAGGATCGACGTTGGTACTAAG 59.904 45.833 0.00 0.00 0.00 2.18
207 208 4.012374 AGAAGGATCGACGTTGGTACTAA 58.988 43.478 0.00 0.00 0.00 2.24
208 209 3.614092 AGAAGGATCGACGTTGGTACTA 58.386 45.455 0.00 0.00 0.00 1.82
209 210 2.444421 AGAAGGATCGACGTTGGTACT 58.556 47.619 0.00 0.00 0.00 2.73
210 211 2.935481 AGAAGGATCGACGTTGGTAC 57.065 50.000 2.20 0.00 0.00 3.34
211 212 2.159476 CGAAGAAGGATCGACGTTGGTA 60.159 50.000 2.20 0.00 42.76 3.25
212 213 1.402456 CGAAGAAGGATCGACGTTGGT 60.402 52.381 2.20 0.00 42.76 3.67
213 214 1.135489 TCGAAGAAGGATCGACGTTGG 60.135 52.381 2.20 0.00 43.76 3.77
214 215 2.177977 CTCGAAGAAGGATCGACGTTG 58.822 52.381 0.00 0.00 43.76 4.10
215 216 1.132643 CCTCGAAGAAGGATCGACGTT 59.867 52.381 0.00 0.00 43.76 3.99
216 217 0.733729 CCTCGAAGAAGGATCGACGT 59.266 55.000 0.00 0.00 43.76 4.34
217 218 1.015109 TCCTCGAAGAAGGATCGACG 58.985 55.000 0.00 0.00 43.76 5.12
218 219 3.180613 GTTTCCTCGAAGAAGGATCGAC 58.819 50.000 0.00 0.00 43.76 4.20
219 220 2.823747 TGTTTCCTCGAAGAAGGATCGA 59.176 45.455 0.00 0.00 46.18 3.59
220 221 3.232213 TGTTTCCTCGAAGAAGGATCG 57.768 47.619 0.00 0.00 41.53 3.69
221 222 5.163713 CCAAATGTTTCCTCGAAGAAGGATC 60.164 44.000 0.00 0.00 34.73 3.36
222 223 4.702131 CCAAATGTTTCCTCGAAGAAGGAT 59.298 41.667 0.00 0.00 34.73 3.24
223 224 4.072131 CCAAATGTTTCCTCGAAGAAGGA 58.928 43.478 0.00 0.00 34.09 3.36
224 225 3.821033 ACCAAATGTTTCCTCGAAGAAGG 59.179 43.478 0.00 0.00 34.09 3.46
225 226 5.008613 TGAACCAAATGTTTCCTCGAAGAAG 59.991 40.000 0.00 0.00 37.29 2.85
226 227 4.884744 TGAACCAAATGTTTCCTCGAAGAA 59.115 37.500 0.00 0.00 37.29 2.52
227 228 4.456535 TGAACCAAATGTTTCCTCGAAGA 58.543 39.130 0.00 0.00 37.29 2.87
228 229 4.829064 TGAACCAAATGTTTCCTCGAAG 57.171 40.909 0.00 0.00 37.29 3.79
229 230 5.106317 GCTATGAACCAAATGTTTCCTCGAA 60.106 40.000 0.00 0.00 37.29 3.71
230 231 4.394920 GCTATGAACCAAATGTTTCCTCGA 59.605 41.667 0.00 0.00 37.29 4.04
231 232 4.438744 GGCTATGAACCAAATGTTTCCTCG 60.439 45.833 0.00 0.00 37.29 4.63
232 233 4.462483 TGGCTATGAACCAAATGTTTCCTC 59.538 41.667 0.00 0.00 37.29 3.71
233 234 4.415596 TGGCTATGAACCAAATGTTTCCT 58.584 39.130 0.00 0.00 37.29 3.36
234 235 4.799564 TGGCTATGAACCAAATGTTTCC 57.200 40.909 0.00 0.00 37.29 3.13
243 244 2.027653 TCACACGATTGGCTATGAACCA 60.028 45.455 0.00 0.00 34.65 3.67
244 245 2.627945 TCACACGATTGGCTATGAACC 58.372 47.619 0.00 0.00 0.00 3.62
245 246 5.984233 TTATCACACGATTGGCTATGAAC 57.016 39.130 0.00 0.00 32.73 3.18
246 247 6.993786 TTTTATCACACGATTGGCTATGAA 57.006 33.333 0.00 0.00 32.73 2.57
247 248 7.416817 CAATTTTATCACACGATTGGCTATGA 58.583 34.615 0.00 0.00 32.73 2.15
248 249 6.142798 GCAATTTTATCACACGATTGGCTATG 59.857 38.462 0.00 0.00 32.73 2.23
249 250 6.183360 TGCAATTTTATCACACGATTGGCTAT 60.183 34.615 0.00 0.00 32.73 2.97
250 251 5.124617 TGCAATTTTATCACACGATTGGCTA 59.875 36.000 0.00 0.00 32.73 3.93
251 252 4.082300 TGCAATTTTATCACACGATTGGCT 60.082 37.500 0.00 0.00 32.73 4.75
252 253 4.031652 GTGCAATTTTATCACACGATTGGC 59.968 41.667 0.00 0.00 32.73 4.52
253 254 4.562394 GGTGCAATTTTATCACACGATTGG 59.438 41.667 0.00 0.00 32.73 3.16
254 255 5.159925 TGGTGCAATTTTATCACACGATTG 58.840 37.500 0.00 0.00 32.73 2.67
255 256 5.384063 TGGTGCAATTTTATCACACGATT 57.616 34.783 0.00 0.00 32.73 3.34
256 257 5.160641 GTTGGTGCAATTTTATCACACGAT 58.839 37.500 0.00 0.00 35.50 3.73
257 258 4.541779 GTTGGTGCAATTTTATCACACGA 58.458 39.130 0.00 0.00 32.69 4.35
258 259 3.360463 CGTTGGTGCAATTTTATCACACG 59.640 43.478 0.00 0.00 32.69 4.49
259 260 4.148000 CACGTTGGTGCAATTTTATCACAC 59.852 41.667 0.00 0.00 37.35 3.82
260 261 4.036852 TCACGTTGGTGCAATTTTATCACA 59.963 37.500 0.00 0.00 44.03 3.58
261 262 4.541779 TCACGTTGGTGCAATTTTATCAC 58.458 39.130 0.00 0.00 44.03 3.06
262 263 4.837896 TCACGTTGGTGCAATTTTATCA 57.162 36.364 0.00 0.00 44.03 2.15
263 264 5.918011 TCTTTCACGTTGGTGCAATTTTATC 59.082 36.000 0.00 0.00 44.03 1.75
264 265 5.837437 TCTTTCACGTTGGTGCAATTTTAT 58.163 33.333 0.00 0.00 44.03 1.40
265 266 5.250235 TCTTTCACGTTGGTGCAATTTTA 57.750 34.783 0.00 0.00 44.03 1.52
266 267 4.116747 TCTTTCACGTTGGTGCAATTTT 57.883 36.364 0.00 0.00 44.03 1.82
267 268 3.791973 TCTTTCACGTTGGTGCAATTT 57.208 38.095 0.00 0.00 44.03 1.82
268 269 3.317711 TCATCTTTCACGTTGGTGCAATT 59.682 39.130 0.00 0.00 44.03 2.32
269 270 2.884012 TCATCTTTCACGTTGGTGCAAT 59.116 40.909 0.00 0.00 44.03 3.56
270 271 2.032799 GTCATCTTTCACGTTGGTGCAA 59.967 45.455 0.00 0.00 44.03 4.08
271 272 1.601903 GTCATCTTTCACGTTGGTGCA 59.398 47.619 0.00 0.00 44.03 4.57
272 273 1.873591 AGTCATCTTTCACGTTGGTGC 59.126 47.619 0.00 0.00 44.03 5.01
273 274 2.349817 GCAGTCATCTTTCACGTTGGTG 60.350 50.000 0.00 0.00 45.78 4.17
274 275 1.873591 GCAGTCATCTTTCACGTTGGT 59.126 47.619 0.00 0.00 0.00 3.67
275 276 1.136252 CGCAGTCATCTTTCACGTTGG 60.136 52.381 0.00 0.00 0.00 3.77
276 277 1.526887 ACGCAGTCATCTTTCACGTTG 59.473 47.619 0.00 0.00 29.74 4.10
277 278 1.865865 ACGCAGTCATCTTTCACGTT 58.134 45.000 0.00 0.00 29.74 3.99
278 279 3.588277 ACGCAGTCATCTTTCACGT 57.412 47.368 0.00 0.00 29.74 4.49
295 296 0.818040 ACCTTGGTTGCGTTGGAGAC 60.818 55.000 0.00 0.00 0.00 3.36
296 297 0.817634 CACCTTGGTTGCGTTGGAGA 60.818 55.000 0.00 0.00 0.00 3.71
297 298 0.817634 TCACCTTGGTTGCGTTGGAG 60.818 55.000 0.00 0.00 0.00 3.86
298 299 0.394488 TTCACCTTGGTTGCGTTGGA 60.394 50.000 0.00 0.00 0.00 3.53
299 300 0.248866 GTTCACCTTGGTTGCGTTGG 60.249 55.000 0.00 0.00 0.00 3.77
300 301 0.738389 AGTTCACCTTGGTTGCGTTG 59.262 50.000 0.00 0.00 0.00 4.10
301 302 0.738389 CAGTTCACCTTGGTTGCGTT 59.262 50.000 0.00 0.00 0.00 4.84
302 303 0.107410 TCAGTTCACCTTGGTTGCGT 60.107 50.000 0.00 0.00 0.00 5.24
303 304 1.069022 CATCAGTTCACCTTGGTTGCG 60.069 52.381 0.00 0.00 0.00 4.85
304 305 2.229792 TCATCAGTTCACCTTGGTTGC 58.770 47.619 0.00 0.00 0.00 4.17
305 306 3.254166 CCTTCATCAGTTCACCTTGGTTG 59.746 47.826 0.00 0.00 0.00 3.77
306 307 3.138283 TCCTTCATCAGTTCACCTTGGTT 59.862 43.478 0.00 0.00 0.00 3.67
307 308 2.711009 TCCTTCATCAGTTCACCTTGGT 59.289 45.455 0.00 0.00 0.00 3.67
308 309 3.423539 TCCTTCATCAGTTCACCTTGG 57.576 47.619 0.00 0.00 0.00 3.61
309 310 6.351711 TGATATCCTTCATCAGTTCACCTTG 58.648 40.000 0.00 0.00 0.00 3.61
310 311 6.566079 TGATATCCTTCATCAGTTCACCTT 57.434 37.500 0.00 0.00 0.00 3.50
311 312 6.760440 ATGATATCCTTCATCAGTTCACCT 57.240 37.500 0.00 0.00 35.93 4.00
321 322 5.919348 ACCCACAAGATGATATCCTTCAT 57.081 39.130 0.00 0.00 39.04 2.57
322 323 6.157820 TGTTACCCACAAGATGATATCCTTCA 59.842 38.462 0.00 0.00 29.87 3.02
323 324 6.591935 TGTTACCCACAAGATGATATCCTTC 58.408 40.000 0.00 0.00 29.87 3.46
324 325 6.575244 TGTTACCCACAAGATGATATCCTT 57.425 37.500 0.00 0.00 29.87 3.36
325 326 6.575244 TTGTTACCCACAAGATGATATCCT 57.425 37.500 0.00 0.00 40.71 3.24
336 337 2.360801 GCTCTTTGCTTGTTACCCACAA 59.639 45.455 0.00 0.00 43.55 3.33
337 338 1.953686 GCTCTTTGCTTGTTACCCACA 59.046 47.619 0.00 0.00 38.95 4.17
338 339 1.953686 TGCTCTTTGCTTGTTACCCAC 59.046 47.619 0.00 0.00 43.37 4.61
339 340 1.953686 GTGCTCTTTGCTTGTTACCCA 59.046 47.619 0.00 0.00 43.37 4.51
340 341 2.030805 CAGTGCTCTTTGCTTGTTACCC 60.031 50.000 0.00 0.00 43.37 3.69
341 342 2.878406 TCAGTGCTCTTTGCTTGTTACC 59.122 45.455 0.00 0.00 43.37 2.85
342 343 4.470462 CATCAGTGCTCTTTGCTTGTTAC 58.530 43.478 0.00 0.00 43.37 2.50
343 344 3.503363 CCATCAGTGCTCTTTGCTTGTTA 59.497 43.478 0.00 0.00 43.37 2.41
344 345 2.295349 CCATCAGTGCTCTTTGCTTGTT 59.705 45.455 0.00 0.00 43.37 2.83
345 346 1.884579 CCATCAGTGCTCTTTGCTTGT 59.115 47.619 0.00 0.00 43.37 3.16
346 347 2.156917 TCCATCAGTGCTCTTTGCTTG 58.843 47.619 0.00 0.00 43.37 4.01
347 348 2.574006 TCCATCAGTGCTCTTTGCTT 57.426 45.000 0.00 0.00 43.37 3.91
348 349 2.026542 TGATCCATCAGTGCTCTTTGCT 60.027 45.455 0.00 0.00 36.04 3.91
349 350 2.362736 TGATCCATCAGTGCTCTTTGC 58.637 47.619 0.00 0.00 35.79 3.68
350 351 3.754850 TGTTGATCCATCAGTGCTCTTTG 59.245 43.478 0.00 0.00 38.19 2.77
351 352 4.025040 TGTTGATCCATCAGTGCTCTTT 57.975 40.909 0.00 0.00 38.19 2.52
352 353 3.708403 TGTTGATCCATCAGTGCTCTT 57.292 42.857 0.00 0.00 38.19 2.85
353 354 3.542648 CATGTTGATCCATCAGTGCTCT 58.457 45.455 0.00 0.00 38.19 4.09
354 355 2.617308 CCATGTTGATCCATCAGTGCTC 59.383 50.000 0.00 0.00 38.19 4.26
355 356 2.651455 CCATGTTGATCCATCAGTGCT 58.349 47.619 0.00 0.00 38.19 4.40
356 357 1.066605 GCCATGTTGATCCATCAGTGC 59.933 52.381 0.00 0.00 38.19 4.40
357 358 2.371306 TGCCATGTTGATCCATCAGTG 58.629 47.619 0.00 0.00 38.19 3.66
358 359 2.812836 TGCCATGTTGATCCATCAGT 57.187 45.000 0.00 0.00 38.19 3.41
359 360 3.243737 CCATTGCCATGTTGATCCATCAG 60.244 47.826 0.00 0.00 38.19 2.90
360 361 2.696187 CCATTGCCATGTTGATCCATCA 59.304 45.455 0.00 0.00 34.44 3.07
361 362 2.036733 CCCATTGCCATGTTGATCCATC 59.963 50.000 0.00 0.00 0.00 3.51
362 363 2.043992 CCCATTGCCATGTTGATCCAT 58.956 47.619 0.00 0.00 0.00 3.41
363 364 1.273154 ACCCATTGCCATGTTGATCCA 60.273 47.619 0.00 0.00 0.00 3.41
364 365 1.488390 ACCCATTGCCATGTTGATCC 58.512 50.000 0.00 0.00 0.00 3.36
365 366 2.362077 GGTACCCATTGCCATGTTGATC 59.638 50.000 0.00 0.00 0.00 2.92
366 367 2.387757 GGTACCCATTGCCATGTTGAT 58.612 47.619 0.00 0.00 0.00 2.57
492 494 1.430992 CTTCCCATACCCATACCCGT 58.569 55.000 0.00 0.00 0.00 5.28
499 501 1.144913 GCTATTGCCTTCCCATACCCA 59.855 52.381 0.00 0.00 0.00 4.51
518 520 2.044352 AGGGTTTGCGGGTATGGC 60.044 61.111 0.00 0.00 0.00 4.40
543 545 9.676861 ACCTACTTGACAGGGTTATTTTTATAC 57.323 33.333 0.00 0.00 37.51 1.47
617 620 2.185350 CGGCTGGTCCAGTGCTAG 59.815 66.667 20.24 4.11 33.43 3.42
653 679 1.466866 GGCGCGGTTTAGAATTGGAAC 60.467 52.381 8.83 0.00 0.00 3.62
675 701 1.376249 AATTGGAAGGGGTGGGGTGT 61.376 55.000 0.00 0.00 0.00 4.16
683 709 5.047306 GGTTTGACTAAAGAATTGGAAGGGG 60.047 44.000 0.00 0.00 0.00 4.79
698 724 1.195900 GCGCACGATTTGGTTTGACTA 59.804 47.619 0.30 0.00 0.00 2.59
726 759 2.416260 GACCGCCTAGGGTTAGCG 59.584 66.667 11.72 7.14 46.96 4.26
831 878 3.709141 GCAAGGAGATTAGGAGAAGGAGT 59.291 47.826 0.00 0.00 0.00 3.85
843 890 4.101448 AGCGGGCGCAAGGAGATT 62.101 61.111 10.83 0.00 44.88 2.40
867 914 2.248248 CTGTGTGTGGTAGAAGGAGGA 58.752 52.381 0.00 0.00 0.00 3.71
981 1028 2.746277 GCGTGTGGATGGGTGGAC 60.746 66.667 0.00 0.00 0.00 4.02
1012 1066 0.105778 GCCTCCTGGATGTCTGCTAC 59.894 60.000 0.00 0.00 34.57 3.58
1081 1135 2.479219 GGTGAGAACTATTCCCGTCGAC 60.479 54.545 5.18 5.18 0.00 4.20
1115 1169 3.565482 GGATGAAGAAGTGCACTTTGACA 59.435 43.478 31.58 27.19 36.11 3.58
1134 1188 1.918293 TGGTTGGAGGCGTGAGGAT 60.918 57.895 0.00 0.00 0.00 3.24
1188 1248 3.291101 GACCTTGTAGCCACCGCGA 62.291 63.158 8.23 0.00 41.18 5.87
1237 1303 2.280552 TAGGAGCAGCCGGACGTTT 61.281 57.895 5.05 0.00 43.43 3.60
1280 1346 5.415415 TCACCAAATTTTTGCCATTTTCG 57.585 34.783 0.00 0.00 36.86 3.46
1284 1350 7.938490 AGAACTATTCACCAAATTTTTGCCATT 59.062 29.630 0.00 0.00 36.86 3.16
1286 1352 6.825610 AGAACTATTCACCAAATTTTTGCCA 58.174 32.000 0.00 0.00 36.86 4.92
1290 1356 8.028652 TGGGAAGAACTATTCACCAAATTTTT 57.971 30.769 0.00 0.00 31.19 1.94
1324 1390 9.910511 CATGCATCAAATAAAATAAGAAAGTGC 57.089 29.630 0.00 0.00 0.00 4.40
1342 1409 4.142337 GGTCATCAACACATTCATGCATCA 60.142 41.667 0.00 0.00 0.00 3.07
1343 1410 4.357142 GGTCATCAACACATTCATGCATC 58.643 43.478 0.00 0.00 0.00 3.91
1352 1419 4.402474 TCACTAGATCGGTCATCAACACAT 59.598 41.667 0.00 0.00 33.29 3.21
1379 1446 8.913487 AGAATCAACTCATGCATCATATACAA 57.087 30.769 0.00 0.00 0.00 2.41
1458 1525 9.624697 TGTTCAATATTGACTAAACAATCAAGC 57.375 29.630 17.76 0.00 40.36 4.01
1567 1637 7.330946 TCATCTAATCGGAAACTACACAAACAG 59.669 37.037 0.00 0.00 0.00 3.16
1573 1643 8.197988 ACAAATCATCTAATCGGAAACTACAC 57.802 34.615 0.00 0.00 0.00 2.90
1578 1648 8.638565 CACAAAACAAATCATCTAATCGGAAAC 58.361 33.333 0.00 0.00 0.00 2.78
1582 1652 5.516339 GCCACAAAACAAATCATCTAATCGG 59.484 40.000 0.00 0.00 0.00 4.18
1586 1656 6.757237 ACATGCCACAAAACAAATCATCTAA 58.243 32.000 0.00 0.00 0.00 2.10
1605 1675 6.867816 TCAATGAATTGGAAACTTGTACATGC 59.132 34.615 8.58 0.00 38.30 4.06
1606 1676 8.865978 CATCAATGAATTGGAAACTTGTACATG 58.134 33.333 7.18 7.18 38.30 3.21
1609 1679 8.081633 TGACATCAATGAATTGGAAACTTGTAC 58.918 33.333 3.31 0.00 38.30 2.90
1694 1764 2.579207 TTCCATCTTCATCGACGGAC 57.421 50.000 0.00 0.00 0.00 4.79
1718 1797 7.829211 TCTTCTTCTCCATCGGAAACATAAATT 59.171 33.333 0.00 0.00 0.00 1.82
1742 1827 3.715315 TCTCCATCTCTTTGGCATCATCT 59.285 43.478 0.00 0.00 36.66 2.90
1752 1837 6.385766 AGAAGGTTGAATCTCCATCTCTTT 57.614 37.500 0.00 0.00 27.38 2.52
1818 1906 4.428294 TCCATTCTCCATTGATCCTCAC 57.572 45.455 0.00 0.00 0.00 3.51
1851 1939 6.665992 GGTGAGTATCCTATGACACCAATA 57.334 41.667 0.00 0.00 44.58 1.90
1864 1952 2.294791 CTCGATCCTGTGGTGAGTATCC 59.705 54.545 0.00 0.00 0.00 2.59
1888 1976 2.290960 ACCCCAAGATGCTTAGTTCCAC 60.291 50.000 0.00 0.00 0.00 4.02
1950 2038 1.596954 CCGACTCAAAGTTTTGCCACG 60.597 52.381 0.00 5.36 38.05 4.94
1999 2087 1.003580 TCTCCATGCTCACTTTCCCAC 59.996 52.381 0.00 0.00 0.00 4.61
2025 2113 6.292811 GCTCTAGCATACTCTTGATCAAAAGC 60.293 42.308 8.74 3.06 41.59 3.51
2072 2160 7.495934 ACCATAGACAAAGGATAATCACGAAAG 59.504 37.037 0.00 0.00 0.00 2.62
2075 2163 6.280643 CACCATAGACAAAGGATAATCACGA 58.719 40.000 0.00 0.00 0.00 4.35
2077 2165 6.483640 GTCCACCATAGACAAAGGATAATCAC 59.516 42.308 0.00 0.00 34.27 3.06
2131 2219 4.730657 CAACTTGAATCATGGCTGAAGTC 58.269 43.478 1.24 0.00 34.37 3.01
2404 2535 2.950781 AGCCTCCAAGACTCATCGATA 58.049 47.619 0.00 0.00 0.00 2.92
2471 2604 1.992667 GGCAAAAGCTTAATGAACCGC 59.007 47.619 14.52 2.96 0.00 5.68
2472 2605 3.296322 TGGCAAAAGCTTAATGAACCG 57.704 42.857 14.52 0.00 0.00 4.44
2581 2741 3.201353 TCCATTTGACCAACGACTCAA 57.799 42.857 0.00 0.00 0.00 3.02
2595 2755 8.684520 CAAGAGCTTTTCATCTAGATTCCATTT 58.315 33.333 1.33 0.00 0.00 2.32
2629 2789 5.826586 ACGTTGACATTGCAATTTCAACTA 58.173 33.333 40.62 23.51 46.31 2.24
2847 3010 7.387673 TGTTATACTTCGCCATATCCTCAAATG 59.612 37.037 0.00 0.00 0.00 2.32
3091 3255 2.290323 GGCAGTCACATAACCAGTTCCT 60.290 50.000 0.00 0.00 0.00 3.36



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.