Multiple sequence alignment - TraesCS1D01G135800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G135800 chr1D 100.000 3999 0 0 1 3999 179435047 179439045 0.000000e+00 7385
1 TraesCS1D01G135800 chr1D 97.037 135 4 0 48 182 407699529 407699395 1.120000e-55 228
2 TraesCS1D01G135800 chr1B 95.961 3689 115 18 178 3848 249235485 249239157 0.000000e+00 5956
3 TraesCS1D01G135800 chr1A 94.737 285 14 1 3565 3848 172968172 172968456 3.670000e-120 442
4 TraesCS1D01G135800 chr1A 91.892 148 11 1 40 186 240318247 240318394 5.240000e-49 206
5 TraesCS1D01G135800 chr2D 97.279 147 4 0 3853 3999 564951315 564951169 2.390000e-62 250
6 TraesCS1D01G135800 chr2D 89.344 122 13 0 3727 3848 200260399 200260278 1.920000e-33 154
7 TraesCS1D01G135800 chr7D 95.513 156 4 3 3846 3999 501641199 501641353 3.090000e-61 246
8 TraesCS1D01G135800 chr7D 96.552 145 5 0 3855 3999 186322704 186322848 1.440000e-59 241
9 TraesCS1D01G135800 chr7D 95.333 150 6 1 3850 3999 450994005 450993857 1.860000e-58 237
10 TraesCS1D01G135800 chr7D 92.035 113 9 0 3733 3845 133352477 133352589 4.140000e-35 159
11 TraesCS1D01G135800 chr4D 95.973 149 4 2 3851 3999 151291281 151291427 1.440000e-59 241
12 TraesCS1D01G135800 chr4D 91.379 116 10 0 3724 3839 128590140 128590255 4.140000e-35 159
13 TraesCS1D01G135800 chr6D 98.529 136 1 1 45 179 115050918 115050783 5.170000e-59 239
14 TraesCS1D01G135800 chr6D 95.302 149 7 0 3851 3999 80193821 80193969 1.860000e-58 237
15 TraesCS1D01G135800 chr3D 95.918 147 6 0 3853 3999 55712647 55712501 5.170000e-59 239
16 TraesCS1D01G135800 chr3D 93.711 159 10 0 3841 3999 252504890 252505048 5.170000e-59 239
17 TraesCS1D01G135800 chr3D 91.176 170 10 4 3831 3999 409773872 409773707 4.020000e-55 226
18 TraesCS1D01G135800 chr2B 98.496 133 2 0 49 181 653915256 653915388 6.680000e-58 235
19 TraesCS1D01G135800 chr2B 95.556 135 6 0 48 182 329140205 329140071 2.420000e-52 217
20 TraesCS1D01G135800 chr2B 90.909 121 11 0 3728 3848 36034795 36034915 3.200000e-36 163
21 TraesCS1D01G135800 chr3B 97.744 133 3 0 47 179 809457972 809457840 3.110000e-56 230
22 TraesCS1D01G135800 chr3B 96.241 133 5 0 47 179 153653567 153653435 6.730000e-53 219
23 TraesCS1D01G135800 chr3B 90.756 119 11 0 3727 3845 487774369 487774251 4.140000e-35 159
24 TraesCS1D01G135800 chr6B 96.241 133 5 0 49 181 117838596 117838464 6.730000e-53 219
25 TraesCS1D01G135800 chr6B 96.241 133 5 0 47 179 143751345 143751477 6.730000e-53 219
26 TraesCS1D01G135800 chr5D 95.495 111 5 0 3727 3837 114006298 114006188 1.140000e-40 178
27 TraesCS1D01G135800 chr7B 90.756 119 11 0 3730 3848 712737266 712737148 4.140000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G135800 chr1D 179435047 179439045 3998 False 7385 7385 100.000 1 3999 1 chr1D.!!$F1 3998
1 TraesCS1D01G135800 chr1B 249235485 249239157 3672 False 5956 5956 95.961 178 3848 1 chr1B.!!$F1 3670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.106469 AGATGCTCCAGCTCCTCGTA 60.106 55.0 0.00 0.0 42.66 3.43 F
418 421 0.544223 GAGGGAAAGAGAGGAAGGCC 59.456 60.0 0.00 0.0 0.00 5.19 F
1072 1084 0.109086 CACCTTGTCTCGTGCGATCT 60.109 55.0 0.00 0.0 0.00 2.75 F
1769 1783 0.321919 GTCAGATGCTTCACCAGGCA 60.322 55.0 2.07 0.0 42.80 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1072 1084 0.533951 ATGATCACGCAGAGCTCACA 59.466 50.0 17.77 3.29 32.67 3.58 R
2185 2199 0.320771 TCTGCCGCTTCAAACTCTCC 60.321 55.0 0.00 0.00 0.00 3.71 R
2248 2262 0.687354 AAGCGCTCCTTTCTTCCTCA 59.313 50.0 12.06 0.00 0.00 3.86 R
3132 3146 0.541863 CGGGGACTAACTGGAAGCAT 59.458 55.0 0.00 0.00 37.60 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.637273 GGTTGGGAGCGGGAGTGT 61.637 66.667 0.00 0.00 0.00 3.55
18 19 2.047179 GTTGGGAGCGGGAGTGTC 60.047 66.667 0.00 0.00 0.00 3.67
19 20 2.525629 TTGGGAGCGGGAGTGTCA 60.526 61.111 0.00 0.00 0.00 3.58
20 21 2.144078 TTGGGAGCGGGAGTGTCAA 61.144 57.895 0.00 0.00 0.00 3.18
21 22 2.111999 TTGGGAGCGGGAGTGTCAAG 62.112 60.000 0.00 0.00 0.00 3.02
22 23 2.283529 GGGAGCGGGAGTGTCAAGA 61.284 63.158 0.00 0.00 0.00 3.02
23 24 1.671742 GGAGCGGGAGTGTCAAGAA 59.328 57.895 0.00 0.00 0.00 2.52
24 25 0.390472 GGAGCGGGAGTGTCAAGAAG 60.390 60.000 0.00 0.00 0.00 2.85
25 26 0.318762 GAGCGGGAGTGTCAAGAAGT 59.681 55.000 0.00 0.00 0.00 3.01
26 27 1.544691 GAGCGGGAGTGTCAAGAAGTA 59.455 52.381 0.00 0.00 0.00 2.24
27 28 1.968493 AGCGGGAGTGTCAAGAAGTAA 59.032 47.619 0.00 0.00 0.00 2.24
28 29 2.067013 GCGGGAGTGTCAAGAAGTAAC 58.933 52.381 0.00 0.00 0.00 2.50
29 30 2.325761 CGGGAGTGTCAAGAAGTAACG 58.674 52.381 0.00 0.00 0.00 3.18
30 31 2.685100 GGGAGTGTCAAGAAGTAACGG 58.315 52.381 0.00 0.00 0.00 4.44
31 32 2.036862 GGGAGTGTCAAGAAGTAACGGT 59.963 50.000 0.00 0.00 0.00 4.83
32 33 3.057734 GGAGTGTCAAGAAGTAACGGTG 58.942 50.000 0.00 0.00 0.00 4.94
33 34 3.243636 GGAGTGTCAAGAAGTAACGGTGA 60.244 47.826 0.00 0.00 0.00 4.02
34 35 4.557205 GAGTGTCAAGAAGTAACGGTGAT 58.443 43.478 0.00 0.00 0.00 3.06
35 36 4.307432 AGTGTCAAGAAGTAACGGTGATG 58.693 43.478 0.00 0.00 0.00 3.07
36 37 4.038763 AGTGTCAAGAAGTAACGGTGATGA 59.961 41.667 0.00 0.00 0.00 2.92
37 38 4.748102 GTGTCAAGAAGTAACGGTGATGAA 59.252 41.667 0.00 0.00 0.00 2.57
38 39 4.988540 TGTCAAGAAGTAACGGTGATGAAG 59.011 41.667 0.00 0.00 0.00 3.02
39 40 5.221362 TGTCAAGAAGTAACGGTGATGAAGA 60.221 40.000 0.00 0.00 0.00 2.87
40 41 5.118817 GTCAAGAAGTAACGGTGATGAAGAC 59.881 44.000 0.00 0.00 0.00 3.01
41 42 4.866508 AGAAGTAACGGTGATGAAGACA 57.133 40.909 0.00 0.00 0.00 3.41
42 43 4.810790 AGAAGTAACGGTGATGAAGACAG 58.189 43.478 0.00 0.00 0.00 3.51
43 44 4.281182 AGAAGTAACGGTGATGAAGACAGT 59.719 41.667 0.00 0.00 0.00 3.55
44 45 5.475909 AGAAGTAACGGTGATGAAGACAGTA 59.524 40.000 0.00 0.00 0.00 2.74
45 46 5.056894 AGTAACGGTGATGAAGACAGTAC 57.943 43.478 0.00 0.00 0.00 2.73
46 47 4.521639 AGTAACGGTGATGAAGACAGTACA 59.478 41.667 0.00 0.00 0.00 2.90
47 48 3.299340 ACGGTGATGAAGACAGTACAC 57.701 47.619 0.00 0.00 0.00 2.90
48 49 2.891580 ACGGTGATGAAGACAGTACACT 59.108 45.455 0.00 0.00 33.14 3.55
49 50 4.077108 ACGGTGATGAAGACAGTACACTA 58.923 43.478 0.00 0.00 33.14 2.74
50 51 4.521639 ACGGTGATGAAGACAGTACACTAA 59.478 41.667 0.00 0.00 33.14 2.24
51 52 5.096169 CGGTGATGAAGACAGTACACTAAG 58.904 45.833 0.00 0.00 33.14 2.18
52 53 5.411781 GGTGATGAAGACAGTACACTAAGG 58.588 45.833 0.00 0.00 33.14 2.69
53 54 5.047235 GGTGATGAAGACAGTACACTAAGGT 60.047 44.000 0.00 0.00 33.14 3.50
54 55 6.094061 GTGATGAAGACAGTACACTAAGGTC 58.906 44.000 0.00 0.00 0.00 3.85
55 56 5.185249 TGATGAAGACAGTACACTAAGGTCC 59.815 44.000 0.00 0.00 0.00 4.46
56 57 4.737578 TGAAGACAGTACACTAAGGTCCT 58.262 43.478 0.00 0.00 0.00 3.85
57 58 4.523173 TGAAGACAGTACACTAAGGTCCTG 59.477 45.833 0.00 0.00 0.00 3.86
58 59 4.115398 AGACAGTACACTAAGGTCCTGT 57.885 45.455 0.00 0.00 35.97 4.00
59 60 4.481072 AGACAGTACACTAAGGTCCTGTT 58.519 43.478 0.00 0.00 33.60 3.16
60 61 4.523558 AGACAGTACACTAAGGTCCTGTTC 59.476 45.833 0.00 0.00 33.60 3.18
61 62 3.255149 ACAGTACACTAAGGTCCTGTTCG 59.745 47.826 0.00 0.00 29.32 3.95
62 63 2.824341 AGTACACTAAGGTCCTGTTCGG 59.176 50.000 0.00 0.00 0.00 4.30
63 64 2.005370 ACACTAAGGTCCTGTTCGGA 57.995 50.000 0.00 0.00 40.30 4.55
64 65 1.893801 ACACTAAGGTCCTGTTCGGAG 59.106 52.381 0.00 0.00 44.20 4.63
65 66 2.168496 CACTAAGGTCCTGTTCGGAGA 58.832 52.381 0.00 0.00 44.20 3.71
66 67 2.094649 CACTAAGGTCCTGTTCGGAGAC 60.095 54.545 0.00 0.00 44.20 3.36
68 69 2.979649 GGTCCTGTTCGGAGACCC 59.020 66.667 3.41 0.00 44.20 4.46
79 80 4.083862 GAGACCCGCCACTCCACC 62.084 72.222 0.00 0.00 0.00 4.61
80 81 4.954118 AGACCCGCCACTCCACCA 62.954 66.667 0.00 0.00 0.00 4.17
81 82 4.699522 GACCCGCCACTCCACCAC 62.700 72.222 0.00 0.00 0.00 4.16
83 84 4.394712 CCCGCCACTCCACCACTC 62.395 72.222 0.00 0.00 0.00 3.51
84 85 4.394712 CCGCCACTCCACCACTCC 62.395 72.222 0.00 0.00 0.00 3.85
85 86 4.742201 CGCCACTCCACCACTCCG 62.742 72.222 0.00 0.00 0.00 4.63
87 88 3.314331 CCACTCCACCACTCCGCT 61.314 66.667 0.00 0.00 0.00 5.52
88 89 2.262915 CACTCCACCACTCCGCTC 59.737 66.667 0.00 0.00 0.00 5.03
89 90 2.997897 ACTCCACCACTCCGCTCC 60.998 66.667 0.00 0.00 0.00 4.70
90 91 3.775654 CTCCACCACTCCGCTCCC 61.776 72.222 0.00 0.00 0.00 4.30
103 104 4.113617 CTCCCGGAGTTGGAGTCA 57.886 61.111 0.73 0.00 43.68 3.41
104 105 2.362242 CTCCCGGAGTTGGAGTCAA 58.638 57.895 0.73 0.00 43.68 3.18
105 106 0.685097 CTCCCGGAGTTGGAGTCAAA 59.315 55.000 0.73 0.00 43.68 2.69
106 107 1.071699 CTCCCGGAGTTGGAGTCAAAA 59.928 52.381 0.73 0.00 43.68 2.44
107 108 1.071699 TCCCGGAGTTGGAGTCAAAAG 59.928 52.381 0.73 0.00 34.28 2.27
108 109 1.523758 CCGGAGTTGGAGTCAAAAGG 58.476 55.000 0.00 0.00 34.28 3.11
109 110 0.875059 CGGAGTTGGAGTCAAAAGGC 59.125 55.000 0.00 0.00 34.28 4.35
110 111 1.813862 CGGAGTTGGAGTCAAAAGGCA 60.814 52.381 0.00 0.00 34.28 4.75
111 112 1.609072 GGAGTTGGAGTCAAAAGGCAC 59.391 52.381 0.00 0.00 34.28 5.01
112 113 1.264288 GAGTTGGAGTCAAAAGGCACG 59.736 52.381 0.00 0.00 34.28 5.34
113 114 0.310854 GTTGGAGTCAAAAGGCACGG 59.689 55.000 0.00 0.00 34.28 4.94
114 115 0.181587 TTGGAGTCAAAAGGCACGGA 59.818 50.000 0.00 0.00 0.00 4.69
115 116 0.250295 TGGAGTCAAAAGGCACGGAG 60.250 55.000 0.00 0.00 0.00 4.63
116 117 1.578206 GGAGTCAAAAGGCACGGAGC 61.578 60.000 0.00 0.00 44.65 4.70
117 118 0.603975 GAGTCAAAAGGCACGGAGCT 60.604 55.000 0.00 0.00 44.79 4.09
118 119 0.886490 AGTCAAAAGGCACGGAGCTG 60.886 55.000 0.00 0.00 44.79 4.24
119 120 1.600636 TCAAAAGGCACGGAGCTGG 60.601 57.895 0.00 0.00 44.79 4.85
120 121 2.282462 AAAAGGCACGGAGCTGGG 60.282 61.111 0.00 0.00 44.79 4.45
121 122 2.829384 AAAAGGCACGGAGCTGGGA 61.829 57.895 0.00 0.00 44.79 4.37
122 123 2.351924 AAAAGGCACGGAGCTGGGAA 62.352 55.000 0.00 0.00 44.79 3.97
123 124 2.351924 AAAGGCACGGAGCTGGGAAA 62.352 55.000 0.00 0.00 44.79 3.13
124 125 2.747855 GGCACGGAGCTGGGAAAG 60.748 66.667 0.00 0.00 44.79 2.62
125 126 2.347490 GCACGGAGCTGGGAAAGA 59.653 61.111 0.00 0.00 41.15 2.52
126 127 1.743252 GCACGGAGCTGGGAAAGAG 60.743 63.158 0.00 0.00 41.15 2.85
127 128 1.975327 CACGGAGCTGGGAAAGAGA 59.025 57.895 0.00 0.00 0.00 3.10
128 129 0.539051 CACGGAGCTGGGAAAGAGAT 59.461 55.000 0.00 0.00 0.00 2.75
129 130 0.539051 ACGGAGCTGGGAAAGAGATG 59.461 55.000 0.00 0.00 0.00 2.90
130 131 0.813210 CGGAGCTGGGAAAGAGATGC 60.813 60.000 0.00 0.00 0.00 3.91
131 132 0.545646 GGAGCTGGGAAAGAGATGCT 59.454 55.000 0.00 0.00 0.00 3.79
132 133 1.474855 GGAGCTGGGAAAGAGATGCTC 60.475 57.143 0.00 0.00 44.08 4.26
133 134 0.545646 AGCTGGGAAAGAGATGCTCC 59.454 55.000 0.00 0.00 0.00 4.70
134 135 0.254178 GCTGGGAAAGAGATGCTCCA 59.746 55.000 0.00 0.00 0.00 3.86
135 136 1.746516 GCTGGGAAAGAGATGCTCCAG 60.747 57.143 0.00 0.00 43.20 3.86
136 137 0.254178 TGGGAAAGAGATGCTCCAGC 59.746 55.000 0.00 0.00 42.50 4.85
137 138 0.545646 GGGAAAGAGATGCTCCAGCT 59.454 55.000 0.00 0.00 42.66 4.24
138 139 1.474855 GGGAAAGAGATGCTCCAGCTC 60.475 57.143 2.47 2.47 45.85 4.09
139 140 1.474855 GGAAAGAGATGCTCCAGCTCC 60.475 57.143 6.85 0.00 46.56 4.70
140 141 1.485895 GAAAGAGATGCTCCAGCTCCT 59.514 52.381 6.85 0.00 46.56 3.69
141 142 1.122227 AAGAGATGCTCCAGCTCCTC 58.878 55.000 6.85 10.76 46.56 3.71
142 143 1.108727 AGAGATGCTCCAGCTCCTCG 61.109 60.000 6.85 0.00 46.56 4.63
143 144 1.381056 AGATGCTCCAGCTCCTCGT 60.381 57.895 0.00 0.00 42.66 4.18
144 145 0.106469 AGATGCTCCAGCTCCTCGTA 60.106 55.000 0.00 0.00 42.66 3.43
145 146 0.965439 GATGCTCCAGCTCCTCGTAT 59.035 55.000 0.00 0.00 42.66 3.06
146 147 1.342819 GATGCTCCAGCTCCTCGTATT 59.657 52.381 0.00 0.00 42.66 1.89
147 148 1.195115 TGCTCCAGCTCCTCGTATTT 58.805 50.000 0.00 0.00 42.66 1.40
148 149 1.555075 TGCTCCAGCTCCTCGTATTTT 59.445 47.619 0.00 0.00 42.66 1.82
149 150 2.027192 TGCTCCAGCTCCTCGTATTTTT 60.027 45.455 0.00 0.00 42.66 1.94
150 151 3.196901 TGCTCCAGCTCCTCGTATTTTTA 59.803 43.478 0.00 0.00 42.66 1.52
151 152 3.804873 GCTCCAGCTCCTCGTATTTTTAG 59.195 47.826 0.00 0.00 38.21 1.85
152 153 4.372656 CTCCAGCTCCTCGTATTTTTAGG 58.627 47.826 0.00 0.00 0.00 2.69
153 154 4.028131 TCCAGCTCCTCGTATTTTTAGGA 58.972 43.478 0.00 0.00 37.07 2.94
160 161 5.974108 TCCTCGTATTTTTAGGAGTTGGAG 58.026 41.667 0.00 0.00 34.46 3.86
161 162 5.482878 TCCTCGTATTTTTAGGAGTTGGAGT 59.517 40.000 0.00 0.00 34.46 3.85
162 163 5.581085 CCTCGTATTTTTAGGAGTTGGAGTG 59.419 44.000 0.00 0.00 31.94 3.51
163 164 6.349243 TCGTATTTTTAGGAGTTGGAGTGA 57.651 37.500 0.00 0.00 0.00 3.41
164 165 6.161381 TCGTATTTTTAGGAGTTGGAGTGAC 58.839 40.000 0.00 0.00 0.00 3.67
165 166 6.014840 TCGTATTTTTAGGAGTTGGAGTGACT 60.015 38.462 0.00 0.00 0.00 3.41
166 167 6.310711 CGTATTTTTAGGAGTTGGAGTGACTC 59.689 42.308 3.47 3.47 42.16 3.36
176 177 2.934083 GAGTGACTCCAAACAGGGC 58.066 57.895 0.00 0.00 38.24 5.19
301 304 4.786575 GCTTAAATTTCTCACCTTTACGCG 59.213 41.667 3.53 3.53 0.00 6.01
390 393 0.997363 TCTCCTCTCTTCCCCACGTA 59.003 55.000 0.00 0.00 0.00 3.57
391 394 1.064611 TCTCCTCTCTTCCCCACGTAG 60.065 57.143 0.00 0.00 0.00 3.51
418 421 0.544223 GAGGGAAAGAGAGGAAGGCC 59.456 60.000 0.00 0.00 0.00 5.19
419 422 1.222113 GGGAAAGAGAGGAAGGCCG 59.778 63.158 0.00 0.00 39.96 6.13
430 440 3.997400 GAAGGCCGCCCCCTCTTTC 62.997 68.421 5.55 0.00 32.93 2.62
444 454 3.559384 CCCTCTTTCCTACCAAGAACCAC 60.559 52.174 0.00 0.00 29.74 4.16
463 473 2.098117 CACATTTCGCCCTCCAATCTTC 59.902 50.000 0.00 0.00 0.00 2.87
469 479 1.078214 CCCTCCAATCTTCGCTGCA 60.078 57.895 0.00 0.00 0.00 4.41
492 502 4.872691 AGATTCTAGCACACCTTTTGATCG 59.127 41.667 0.00 0.00 0.00 3.69
524 536 2.629617 AGTCTCAGTTTGGGCAATTTGG 59.370 45.455 0.00 0.00 0.00 3.28
616 628 4.889409 TCTTGTGCCAATCTGAAAAGTTCT 59.111 37.500 0.00 0.00 0.00 3.01
895 907 1.105759 GGCACTCCCAATCCTGCATC 61.106 60.000 0.00 0.00 0.00 3.91
945 957 1.007336 GGTGTTGCCGAGACGTACTG 61.007 60.000 0.00 0.00 0.00 2.74
1062 1074 1.343465 CGGTTCTGGTACACCTTGTCT 59.657 52.381 0.00 0.00 36.82 3.41
1072 1084 0.109086 CACCTTGTCTCGTGCGATCT 60.109 55.000 0.00 0.00 0.00 2.75
1116 1128 0.673333 TCCATGTGGCTGCTACAACG 60.673 55.000 22.56 15.81 34.44 4.10
1203 1215 2.308722 GGACCAAGCCCTCCATGGA 61.309 63.158 15.27 15.27 37.66 3.41
1246 1258 1.002134 GTGTGTGCTGCCCATAGGT 60.002 57.895 0.00 0.00 34.57 3.08
1299 1311 4.338964 AGTCACAACAATCTTGCACATTCA 59.661 37.500 0.00 0.00 0.00 2.57
1366 1378 5.220681 GGCTTTGTCGATGAGGTTAATTCTC 60.221 44.000 0.00 2.87 0.00 2.87
1371 1383 3.952323 TCGATGAGGTTAATTCTCGGTCT 59.048 43.478 0.00 0.00 34.19 3.85
1401 1413 6.349445 CGAGGTCTAGACAGTTATGTTCTTGT 60.349 42.308 23.91 0.00 40.68 3.16
1430 1442 0.813184 CCATTCAAGAAGGCGTGCAT 59.187 50.000 0.00 0.00 0.00 3.96
1455 1467 5.401550 GCACATAAGCTTTATGAAACTGCA 58.598 37.500 3.20 0.00 0.00 4.41
1466 1478 6.757897 TTATGAAACTGCAGATGTTAAGGG 57.242 37.500 23.35 0.00 0.00 3.95
1467 1479 2.819608 TGAAACTGCAGATGTTAAGGGC 59.180 45.455 23.35 0.14 0.00 5.19
1520 1532 0.475906 AAGCAGAGGAGCCAAGTTGT 59.524 50.000 1.45 0.00 34.23 3.32
1558 1570 2.283388 CTGCCATGCCACCCAAGT 60.283 61.111 0.00 0.00 0.00 3.16
1604 1616 8.463930 ACAGATCATTCAAAAGTTAAAGGTGA 57.536 30.769 0.00 0.00 0.00 4.02
1696 1710 5.111989 TCATTTCTGGAAATCTACTGAGCG 58.888 41.667 5.68 0.00 38.84 5.03
1769 1783 0.321919 GTCAGATGCTTCACCAGGCA 60.322 55.000 2.07 0.00 42.80 4.75
1786 1800 5.125356 CCAGGCACATATGAACAATCTACA 58.875 41.667 10.38 0.00 0.00 2.74
1792 1806 7.013655 GGCACATATGAACAATCTACAAAGGAT 59.986 37.037 10.38 0.00 0.00 3.24
1903 1917 8.205131 ACAACAGTATTAAGAACACTTTCGTT 57.795 30.769 0.00 0.00 36.78 3.85
1904 1918 8.120465 ACAACAGTATTAAGAACACTTTCGTTG 58.880 33.333 0.00 0.00 36.78 4.10
1957 1971 2.183679 GAGATAATCTCTGCCCGGGAT 58.816 52.381 29.31 5.51 40.30 3.85
1969 1983 2.775384 TGCCCGGGATAACAATTCTACT 59.225 45.455 29.31 0.00 0.00 2.57
2034 2048 3.372440 AAGGGGCCTTGACTATTCTTG 57.628 47.619 0.84 0.00 34.60 3.02
2049 2063 7.093727 TGACTATTCTTGGACTGAAGGAGTAAG 60.094 40.741 0.00 0.00 33.83 2.34
2126 2140 6.442952 CCATACCTCGAGAGAAATTACTCTG 58.557 44.000 15.71 0.00 45.69 3.35
2135 2149 6.591834 CGAGAGAAATTACTCTGTGTTGGAAT 59.408 38.462 0.00 0.00 45.69 3.01
2137 2151 7.453393 AGAGAAATTACTCTGTGTTGGAATCA 58.547 34.615 0.00 0.00 44.29 2.57
2152 2166 2.689983 GGAATCATCGGATGCAAACCTT 59.310 45.455 13.15 0.41 32.92 3.50
2155 2169 1.176527 CATCGGATGCAAACCTTGGT 58.823 50.000 4.84 0.00 0.00 3.67
2185 2199 3.025978 AGCTGAAGGAGAGATCTCACTG 58.974 50.000 24.39 11.04 44.60 3.66
2212 2226 2.408271 TGAAGCGGCAGATTGAGATT 57.592 45.000 1.45 0.00 0.00 2.40
2269 2283 0.390472 AGGAAGAAAGGAGCGCTTCG 60.390 55.000 13.26 0.00 39.05 3.79
2329 2343 0.540133 TGCATGAGGAAAAGGCTGCA 60.540 50.000 0.50 0.00 37.29 4.41
2464 2478 2.700371 TGACATGGATGCCGAACTAGAT 59.300 45.455 0.00 0.00 0.00 1.98
2473 2487 3.011818 TGCCGAACTAGATAGTTGTCGA 58.988 45.455 9.90 0.00 45.84 4.20
2578 2592 5.454554 GTCATTTGATGTCTTGAATGCATCG 59.545 40.000 0.00 0.00 41.17 3.84
2690 2704 6.486253 TTTCTACATACAAGCTTGCTTCTG 57.514 37.500 26.27 18.69 0.00 3.02
2696 2710 5.066117 ACATACAAGCTTGCTTCTGATGATG 59.934 40.000 26.27 15.72 0.00 3.07
2700 2714 1.475280 GCTTGCTTCTGATGATGCCAA 59.525 47.619 0.00 0.00 41.10 4.52
2748 2762 7.092712 TGGAGATCATATAGGGGATGAATCAAC 60.093 40.741 0.00 0.00 36.90 3.18
2801 2815 4.999950 ACAAGGATGAGTGTTCATGTTCTC 59.000 41.667 0.00 0.00 44.01 2.87
2870 2884 6.878923 TGAAATTTCACTCTTGGATACACGAT 59.121 34.615 16.91 0.00 38.34 3.73
3031 3045 6.173339 TGTTTTGTCTTGAGTTGAGAAGTCT 58.827 36.000 0.00 0.00 0.00 3.24
3054 3068 5.413309 ACCAACTCTTCTCAGTTCCATAG 57.587 43.478 0.00 0.00 34.17 2.23
3061 3075 6.931840 ACTCTTCTCAGTTCCATAGTTGAAAC 59.068 38.462 0.00 0.00 0.00 2.78
3062 3076 6.826668 TCTTCTCAGTTCCATAGTTGAAACA 58.173 36.000 0.00 0.00 0.00 2.83
3063 3077 7.453393 TCTTCTCAGTTCCATAGTTGAAACAT 58.547 34.615 0.00 0.00 0.00 2.71
3064 3078 7.939039 TCTTCTCAGTTCCATAGTTGAAACATT 59.061 33.333 0.00 0.00 0.00 2.71
3065 3079 8.463930 TTCTCAGTTCCATAGTTGAAACATTT 57.536 30.769 0.00 0.00 0.00 2.32
3073 3087 8.094798 TCCATAGTTGAAACATTTACACACTC 57.905 34.615 0.00 0.00 0.00 3.51
3121 3135 1.899814 TCGTGTGGAGATTTACAGCCT 59.100 47.619 0.00 0.00 0.00 4.58
3132 3146 2.605837 TTACAGCCTGACAACGACAA 57.394 45.000 0.00 0.00 0.00 3.18
3150 3168 2.290960 ACAATGCTTCCAGTTAGTCCCC 60.291 50.000 0.00 0.00 0.00 4.81
3179 3197 4.207019 GGCGTTGATTATAAATTGCAGTGC 59.793 41.667 8.58 8.58 0.00 4.40
3188 3206 1.636148 AATTGCAGTGCTGGGAACAT 58.364 45.000 17.60 0.00 41.51 2.71
3220 3238 9.698309 CTTGTGTAAGATCATCCGTTATTCTAT 57.302 33.333 0.00 0.00 35.92 1.98
3269 3287 0.958382 GCGCCCACTGACCAAACATA 60.958 55.000 0.00 0.00 0.00 2.29
3270 3288 1.750193 CGCCCACTGACCAAACATAT 58.250 50.000 0.00 0.00 0.00 1.78
3271 3289 1.670811 CGCCCACTGACCAAACATATC 59.329 52.381 0.00 0.00 0.00 1.63
3272 3290 2.024414 GCCCACTGACCAAACATATCC 58.976 52.381 0.00 0.00 0.00 2.59
3273 3291 2.620367 GCCCACTGACCAAACATATCCA 60.620 50.000 0.00 0.00 0.00 3.41
3274 3292 3.902218 CCCACTGACCAAACATATCCAT 58.098 45.455 0.00 0.00 0.00 3.41
3275 3293 3.885297 CCCACTGACCAAACATATCCATC 59.115 47.826 0.00 0.00 0.00 3.51
3282 3300 6.484288 TGACCAAACATATCCATCTCTTGTT 58.516 36.000 0.00 0.00 32.19 2.83
3283 3301 6.947733 TGACCAAACATATCCATCTCTTGTTT 59.052 34.615 0.00 0.00 40.18 2.83
3295 3313 4.806342 TCTCTTGTTTTTACCTCGTTGC 57.194 40.909 0.00 0.00 0.00 4.17
3337 3355 9.317936 CACTACAGCAAATCACTGATATAGAAA 57.682 33.333 0.00 0.00 38.55 2.52
3341 3359 9.107177 ACAGCAAATCACTGATATAGAAAAGAG 57.893 33.333 0.00 0.00 38.55 2.85
3343 3361 9.896645 AGCAAATCACTGATATAGAAAAGAGAA 57.103 29.630 0.00 0.00 0.00 2.87
3384 3402 2.924757 TGATCATCTGATGGGTGCTC 57.075 50.000 17.06 7.65 34.37 4.26
3406 3424 6.500684 TCAAATTAGGAGCAAGCTTGTAAG 57.499 37.500 26.55 2.53 0.00 2.34
3438 3456 1.344114 TGAAATGCTTGGGGTTCTTGC 59.656 47.619 0.00 0.00 0.00 4.01
3495 3513 1.117994 TTGATGCCAAACCAGTGCAA 58.882 45.000 0.00 0.00 38.69 4.08
3675 3693 4.279671 TGTCCGCATATTGTTTGGAACTTT 59.720 37.500 0.00 0.00 0.00 2.66
3710 3728 6.260493 CCTTTGGACTTCAAAAATTGCATCAA 59.740 34.615 0.00 0.00 43.88 2.57
3733 3751 8.296713 TCAATAACTTCAACAAATTAGACTGCC 58.703 33.333 0.00 0.00 0.00 4.85
3735 3753 4.469657 ACTTCAACAAATTAGACTGCCCA 58.530 39.130 0.00 0.00 0.00 5.36
3736 3754 4.520492 ACTTCAACAAATTAGACTGCCCAG 59.480 41.667 0.00 0.00 0.00 4.45
3756 3774 0.608640 AGTGGGAGTAACTTCAGCGG 59.391 55.000 0.00 0.00 0.00 5.52
3774 3792 3.008704 AGCGGTAACATAAGGTCCAACTT 59.991 43.478 0.00 0.00 34.52 2.66
3776 3794 4.569564 GCGGTAACATAAGGTCCAACTTAG 59.430 45.833 0.00 0.00 36.47 2.18
3784 3802 7.962441 ACATAAGGTCCAACTTAGCAAATTTT 58.038 30.769 0.00 0.00 36.47 1.82
3816 3834 7.716998 GTGGCAATGATTTAATAAGGAGAGAGA 59.283 37.037 0.00 0.00 0.00 3.10
3833 3851 9.378504 AGGAGAGAGATGATTTGAGTAACATAT 57.621 33.333 0.00 0.00 0.00 1.78
3848 3866 7.610305 TGAGTAACATATCTAGTCACTCACACA 59.390 37.037 0.00 0.00 36.82 3.72
3849 3867 8.349568 AGTAACATATCTAGTCACTCACACAA 57.650 34.615 0.00 0.00 0.00 3.33
3850 3868 8.244802 AGTAACATATCTAGTCACTCACACAAC 58.755 37.037 0.00 0.00 0.00 3.32
3851 3869 6.590234 ACATATCTAGTCACTCACACAACA 57.410 37.500 0.00 0.00 0.00 3.33
3852 3870 7.175347 ACATATCTAGTCACTCACACAACAT 57.825 36.000 0.00 0.00 0.00 2.71
3853 3871 8.293699 ACATATCTAGTCACTCACACAACATA 57.706 34.615 0.00 0.00 0.00 2.29
3854 3872 8.191446 ACATATCTAGTCACTCACACAACATAC 58.809 37.037 0.00 0.00 0.00 2.39
3855 3873 6.590234 ATCTAGTCACTCACACAACATACA 57.410 37.500 0.00 0.00 0.00 2.29
3856 3874 5.769367 TCTAGTCACTCACACAACATACAC 58.231 41.667 0.00 0.00 0.00 2.90
3857 3875 4.672587 AGTCACTCACACAACATACACT 57.327 40.909 0.00 0.00 0.00 3.55
3858 3876 4.371786 AGTCACTCACACAACATACACTG 58.628 43.478 0.00 0.00 0.00 3.66
3859 3877 3.494626 GTCACTCACACAACATACACTGG 59.505 47.826 0.00 0.00 0.00 4.00
3860 3878 3.133901 TCACTCACACAACATACACTGGT 59.866 43.478 0.00 0.00 0.00 4.00
3866 3884 1.225855 CAACATACACTGGTGCACGT 58.774 50.000 11.45 5.51 35.33 4.49
3867 3885 1.194547 CAACATACACTGGTGCACGTC 59.805 52.381 11.45 0.00 35.33 4.34
3868 3886 0.666274 ACATACACTGGTGCACGTCG 60.666 55.000 11.45 3.90 0.00 5.12
3869 3887 1.080093 ATACACTGGTGCACGTCGG 60.080 57.895 11.45 5.54 0.00 4.79
3870 3888 1.812686 ATACACTGGTGCACGTCGGT 61.813 55.000 11.45 6.24 0.00 4.69
3871 3889 2.410638 TACACTGGTGCACGTCGGTC 62.411 60.000 11.45 0.00 0.00 4.79
3872 3890 4.295119 ACTGGTGCACGTCGGTCC 62.295 66.667 11.45 0.00 0.00 4.46
3873 3891 3.991051 CTGGTGCACGTCGGTCCT 61.991 66.667 11.45 0.00 0.00 3.85
3874 3892 2.598099 TGGTGCACGTCGGTCCTA 60.598 61.111 11.45 0.00 0.00 2.94
3875 3893 2.149803 CTGGTGCACGTCGGTCCTAA 62.150 60.000 11.45 0.00 0.00 2.69
3876 3894 1.005867 GGTGCACGTCGGTCCTAAA 60.006 57.895 11.45 0.00 0.00 1.85
3877 3895 1.287041 GGTGCACGTCGGTCCTAAAC 61.287 60.000 11.45 0.00 0.00 2.01
3878 3896 0.598158 GTGCACGTCGGTCCTAAACA 60.598 55.000 0.00 0.00 0.00 2.83
3879 3897 0.104487 TGCACGTCGGTCCTAAACAA 59.896 50.000 0.00 0.00 0.00 2.83
3880 3898 1.219646 GCACGTCGGTCCTAAACAAA 58.780 50.000 0.00 0.00 0.00 2.83
3881 3899 1.070376 GCACGTCGGTCCTAAACAAAC 60.070 52.381 0.00 0.00 0.00 2.93
3882 3900 1.190763 CACGTCGGTCCTAAACAAACG 59.809 52.381 0.00 0.00 40.86 3.60
3883 3901 0.785979 CGTCGGTCCTAAACAAACGG 59.214 55.000 0.00 0.00 35.12 4.44
3884 3902 1.869342 CGTCGGTCCTAAACAAACGGT 60.869 52.381 0.00 0.00 35.12 4.83
3885 3903 2.212652 GTCGGTCCTAAACAAACGGTT 58.787 47.619 0.00 0.00 42.98 4.44
3905 3923 1.515081 TTTTACCCCTTTCTGCGACG 58.485 50.000 0.00 0.00 0.00 5.12
3906 3924 0.320946 TTTACCCCTTTCTGCGACGG 60.321 55.000 0.00 0.00 0.00 4.79
3907 3925 2.791501 TTACCCCTTTCTGCGACGGC 62.792 60.000 0.00 0.00 40.52 5.68
3916 3934 2.950673 TGCGACGGCATTTGGAAC 59.049 55.556 0.00 0.00 46.21 3.62
3917 3935 2.178273 GCGACGGCATTTGGAACC 59.822 61.111 0.00 0.00 39.62 3.62
3921 3939 2.478746 CGGCATTTGGAACCGTCG 59.521 61.111 0.00 0.00 42.01 5.12
3922 3940 2.178273 GGCATTTGGAACCGTCGC 59.822 61.111 0.00 0.00 0.00 5.19
3923 3941 2.178273 GCATTTGGAACCGTCGCC 59.822 61.111 0.00 0.00 0.00 5.54
3924 3942 2.622011 GCATTTGGAACCGTCGCCA 61.622 57.895 0.00 0.00 0.00 5.69
3925 3943 1.953017 CATTTGGAACCGTCGCCAA 59.047 52.632 0.00 0.00 42.11 4.52
3926 3944 0.109781 CATTTGGAACCGTCGCCAAG 60.110 55.000 0.00 0.00 44.30 3.61
3927 3945 0.536460 ATTTGGAACCGTCGCCAAGT 60.536 50.000 0.00 0.00 44.30 3.16
3928 3946 1.440938 TTTGGAACCGTCGCCAAGTG 61.441 55.000 0.00 0.00 44.30 3.16
3929 3947 2.029964 GGAACCGTCGCCAAGTGA 59.970 61.111 0.00 0.00 0.00 3.41
3930 3948 2.027625 GGAACCGTCGCCAAGTGAG 61.028 63.158 0.00 0.00 0.00 3.51
3931 3949 1.300697 GAACCGTCGCCAAGTGAGT 60.301 57.895 0.00 0.00 0.00 3.41
3932 3950 1.557443 GAACCGTCGCCAAGTGAGTG 61.557 60.000 0.00 0.00 0.00 3.51
3933 3951 2.029073 CCGTCGCCAAGTGAGTGT 59.971 61.111 0.00 0.00 0.00 3.55
3934 3952 2.310233 CCGTCGCCAAGTGAGTGTG 61.310 63.158 0.00 0.00 0.00 3.82
3935 3953 2.310233 CGTCGCCAAGTGAGTGTGG 61.310 63.158 0.00 0.00 38.00 4.17
3936 3954 1.961277 GTCGCCAAGTGAGTGTGGG 60.961 63.158 0.00 0.00 35.28 4.61
3937 3955 3.357079 CGCCAAGTGAGTGTGGGC 61.357 66.667 0.00 0.00 41.20 5.36
3938 3956 2.985847 GCCAAGTGAGTGTGGGCC 60.986 66.667 0.00 0.00 38.70 5.80
3939 3957 2.515398 CCAAGTGAGTGTGGGCCA 59.485 61.111 0.00 0.00 0.00 5.36
3940 3958 1.075482 CCAAGTGAGTGTGGGCCAT 59.925 57.895 10.70 0.00 0.00 4.40
3941 3959 0.327924 CCAAGTGAGTGTGGGCCATA 59.672 55.000 10.70 3.21 0.00 2.74
3942 3960 1.679944 CCAAGTGAGTGTGGGCCATAG 60.680 57.143 10.70 0.00 0.00 2.23
3943 3961 1.278985 CAAGTGAGTGTGGGCCATAGA 59.721 52.381 10.70 0.00 0.00 1.98
3944 3962 1.198713 AGTGAGTGTGGGCCATAGAG 58.801 55.000 10.70 0.00 0.00 2.43
3945 3963 0.179000 GTGAGTGTGGGCCATAGAGG 59.821 60.000 10.70 0.00 41.84 3.69
3946 3964 0.982852 TGAGTGTGGGCCATAGAGGG 60.983 60.000 10.70 0.00 38.09 4.30
3947 3965 1.694169 AGTGTGGGCCATAGAGGGG 60.694 63.158 10.70 0.00 38.09 4.79
3948 3966 2.001269 GTGTGGGCCATAGAGGGGT 61.001 63.158 10.70 0.00 38.09 4.95
3949 3967 1.692749 TGTGGGCCATAGAGGGGTC 60.693 63.158 10.70 0.00 38.09 4.46
3951 3969 2.290745 GGGCCATAGAGGGGTCCT 59.709 66.667 4.39 0.00 47.00 3.85
3952 3970 1.386057 GGGCCATAGAGGGGTCCTT 60.386 63.158 4.39 0.00 47.00 3.36
3953 3971 1.419720 GGGCCATAGAGGGGTCCTTC 61.420 65.000 4.39 0.00 47.00 3.46
3954 3972 1.419720 GGCCATAGAGGGGTCCTTCC 61.420 65.000 0.00 0.00 38.09 3.46
3963 3981 2.346365 GGTCCTTCCCACACGACC 59.654 66.667 0.00 0.00 38.18 4.79
3964 3982 2.346365 GTCCTTCCCACACGACCC 59.654 66.667 0.00 0.00 0.00 4.46
3965 3983 2.122769 TCCTTCCCACACGACCCA 60.123 61.111 0.00 0.00 0.00 4.51
3966 3984 2.214216 TCCTTCCCACACGACCCAG 61.214 63.158 0.00 0.00 0.00 4.45
3967 3985 2.214216 CCTTCCCACACGACCCAGA 61.214 63.158 0.00 0.00 0.00 3.86
3968 3986 1.752198 CTTCCCACACGACCCAGAA 59.248 57.895 0.00 0.00 0.00 3.02
3969 3987 0.107831 CTTCCCACACGACCCAGAAA 59.892 55.000 0.00 0.00 0.00 2.52
3970 3988 0.179040 TTCCCACACGACCCAGAAAC 60.179 55.000 0.00 0.00 0.00 2.78
3971 3989 1.599797 CCCACACGACCCAGAAACC 60.600 63.158 0.00 0.00 0.00 3.27
3972 3990 1.959226 CCACACGACCCAGAAACCG 60.959 63.158 0.00 0.00 0.00 4.44
3973 3991 1.227438 CACACGACCCAGAAACCGT 60.227 57.895 0.00 0.00 35.46 4.83
3974 3992 0.032403 CACACGACCCAGAAACCGTA 59.968 55.000 0.00 0.00 33.62 4.02
3975 3993 0.316204 ACACGACCCAGAAACCGTAG 59.684 55.000 0.00 0.00 33.62 3.51
3988 4006 4.115270 CGTAGGGGATAGGGAGCC 57.885 66.667 0.00 0.00 0.00 4.70
3989 4007 1.465623 CGTAGGGGATAGGGAGCCT 59.534 63.158 0.00 0.00 37.71 4.58
3990 4008 0.178929 CGTAGGGGATAGGGAGCCTT 60.179 60.000 0.00 0.00 34.61 4.35
3991 4009 1.353091 GTAGGGGATAGGGAGCCTTG 58.647 60.000 0.00 0.00 34.61 3.61
3992 4010 1.132817 GTAGGGGATAGGGAGCCTTGA 60.133 57.143 0.00 0.00 34.61 3.02
3993 4011 0.575333 AGGGGATAGGGAGCCTTGAT 59.425 55.000 0.00 0.00 34.61 2.57
3994 4012 0.695347 GGGGATAGGGAGCCTTGATG 59.305 60.000 0.00 0.00 34.61 3.07
3995 4013 0.037447 GGGATAGGGAGCCTTGATGC 59.963 60.000 0.00 0.00 34.61 3.91
3996 4014 0.767375 GGATAGGGAGCCTTGATGCA 59.233 55.000 0.00 0.00 34.61 3.96
3997 4015 1.353694 GGATAGGGAGCCTTGATGCAT 59.646 52.381 0.00 0.00 34.61 3.96
3998 4016 2.573462 GGATAGGGAGCCTTGATGCATA 59.427 50.000 0.00 0.00 34.61 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.607370 GACACTCCCGCTCCCAACC 62.607 68.421 0.00 0.00 0.00 3.77
1 2 2.047179 GACACTCCCGCTCCCAAC 60.047 66.667 0.00 0.00 0.00 3.77
2 3 2.111999 CTTGACACTCCCGCTCCCAA 62.112 60.000 0.00 0.00 0.00 4.12
3 4 2.525629 TTGACACTCCCGCTCCCA 60.526 61.111 0.00 0.00 0.00 4.37
4 5 1.827399 TTCTTGACACTCCCGCTCCC 61.827 60.000 0.00 0.00 0.00 4.30
5 6 0.390472 CTTCTTGACACTCCCGCTCC 60.390 60.000 0.00 0.00 0.00 4.70
6 7 0.318762 ACTTCTTGACACTCCCGCTC 59.681 55.000 0.00 0.00 0.00 5.03
7 8 1.629043 TACTTCTTGACACTCCCGCT 58.371 50.000 0.00 0.00 0.00 5.52
8 9 2.067013 GTTACTTCTTGACACTCCCGC 58.933 52.381 0.00 0.00 0.00 6.13
9 10 2.325761 CGTTACTTCTTGACACTCCCG 58.674 52.381 0.00 0.00 0.00 5.14
10 11 2.036862 ACCGTTACTTCTTGACACTCCC 59.963 50.000 0.00 0.00 0.00 4.30
11 12 3.057734 CACCGTTACTTCTTGACACTCC 58.942 50.000 0.00 0.00 0.00 3.85
12 13 3.973657 TCACCGTTACTTCTTGACACTC 58.026 45.455 0.00 0.00 0.00 3.51
13 14 4.038763 TCATCACCGTTACTTCTTGACACT 59.961 41.667 0.00 0.00 0.00 3.55
14 15 4.304110 TCATCACCGTTACTTCTTGACAC 58.696 43.478 0.00 0.00 0.00 3.67
15 16 4.594123 TCATCACCGTTACTTCTTGACA 57.406 40.909 0.00 0.00 0.00 3.58
16 17 5.118817 GTCTTCATCACCGTTACTTCTTGAC 59.881 44.000 0.00 0.00 0.00 3.18
17 18 5.221362 TGTCTTCATCACCGTTACTTCTTGA 60.221 40.000 0.00 0.00 0.00 3.02
18 19 4.988540 TGTCTTCATCACCGTTACTTCTTG 59.011 41.667 0.00 0.00 0.00 3.02
19 20 5.209818 TGTCTTCATCACCGTTACTTCTT 57.790 39.130 0.00 0.00 0.00 2.52
20 21 4.281182 ACTGTCTTCATCACCGTTACTTCT 59.719 41.667 0.00 0.00 0.00 2.85
21 22 4.557205 ACTGTCTTCATCACCGTTACTTC 58.443 43.478 0.00 0.00 0.00 3.01
22 23 4.602340 ACTGTCTTCATCACCGTTACTT 57.398 40.909 0.00 0.00 0.00 2.24
23 24 4.521639 TGTACTGTCTTCATCACCGTTACT 59.478 41.667 0.00 0.00 0.00 2.24
24 25 4.620184 GTGTACTGTCTTCATCACCGTTAC 59.380 45.833 0.00 0.00 0.00 2.50
25 26 4.521639 AGTGTACTGTCTTCATCACCGTTA 59.478 41.667 0.00 0.00 0.00 3.18
26 27 3.321111 AGTGTACTGTCTTCATCACCGTT 59.679 43.478 0.00 0.00 0.00 4.44
27 28 2.891580 AGTGTACTGTCTTCATCACCGT 59.108 45.455 0.00 0.00 0.00 4.83
28 29 3.577649 AGTGTACTGTCTTCATCACCG 57.422 47.619 0.00 0.00 0.00 4.94
29 30 5.047235 ACCTTAGTGTACTGTCTTCATCACC 60.047 44.000 0.00 0.00 0.00 4.02
30 31 6.026947 ACCTTAGTGTACTGTCTTCATCAC 57.973 41.667 0.00 0.00 0.00 3.06
31 32 5.185249 GGACCTTAGTGTACTGTCTTCATCA 59.815 44.000 0.00 0.00 0.00 3.07
32 33 5.419471 AGGACCTTAGTGTACTGTCTTCATC 59.581 44.000 0.00 0.00 0.00 2.92
33 34 5.186021 CAGGACCTTAGTGTACTGTCTTCAT 59.814 44.000 0.00 0.00 41.46 2.57
34 35 4.523173 CAGGACCTTAGTGTACTGTCTTCA 59.477 45.833 0.00 0.00 41.46 3.02
35 36 5.061920 CAGGACCTTAGTGTACTGTCTTC 57.938 47.826 0.00 0.00 41.46 2.87
41 42 2.824341 CCGAACAGGACCTTAGTGTACT 59.176 50.000 0.00 0.00 45.00 2.73
42 43 2.821969 TCCGAACAGGACCTTAGTGTAC 59.178 50.000 0.00 0.00 45.98 2.90
43 44 3.087031 CTCCGAACAGGACCTTAGTGTA 58.913 50.000 0.00 0.00 45.98 2.90
44 45 1.893801 CTCCGAACAGGACCTTAGTGT 59.106 52.381 0.00 0.00 45.98 3.55
45 46 2.094649 GTCTCCGAACAGGACCTTAGTG 60.095 54.545 0.00 0.00 45.98 2.74
46 47 2.169330 GTCTCCGAACAGGACCTTAGT 58.831 52.381 0.00 0.00 45.98 2.24
47 48 1.477295 GGTCTCCGAACAGGACCTTAG 59.523 57.143 0.00 0.00 45.98 2.18
48 49 1.553706 GGTCTCCGAACAGGACCTTA 58.446 55.000 0.00 0.00 45.98 2.69
49 50 1.192803 GGGTCTCCGAACAGGACCTT 61.193 60.000 10.53 0.00 45.98 3.50
50 51 1.609794 GGGTCTCCGAACAGGACCT 60.610 63.158 10.53 0.00 45.98 3.85
51 52 2.979649 GGGTCTCCGAACAGGACC 59.020 66.667 0.00 0.00 45.98 4.46
62 63 4.083862 GGTGGAGTGGCGGGTCTC 62.084 72.222 0.00 0.00 0.00 3.36
63 64 4.954118 TGGTGGAGTGGCGGGTCT 62.954 66.667 0.00 0.00 0.00 3.85
64 65 4.699522 GTGGTGGAGTGGCGGGTC 62.700 72.222 0.00 0.00 0.00 4.46
66 67 4.394712 GAGTGGTGGAGTGGCGGG 62.395 72.222 0.00 0.00 0.00 6.13
67 68 4.394712 GGAGTGGTGGAGTGGCGG 62.395 72.222 0.00 0.00 0.00 6.13
68 69 4.742201 CGGAGTGGTGGAGTGGCG 62.742 72.222 0.00 0.00 0.00 5.69
70 71 3.302347 GAGCGGAGTGGTGGAGTGG 62.302 68.421 0.00 0.00 0.00 4.00
71 72 2.262915 GAGCGGAGTGGTGGAGTG 59.737 66.667 0.00 0.00 0.00 3.51
72 73 2.997897 GGAGCGGAGTGGTGGAGT 60.998 66.667 0.00 0.00 0.00 3.85
73 74 3.775654 GGGAGCGGAGTGGTGGAG 61.776 72.222 0.00 0.00 0.00 3.86
82 83 4.689549 TCCAACTCCGGGAGCGGA 62.690 66.667 24.76 24.76 33.83 5.54
83 84 4.148825 CTCCAACTCCGGGAGCGG 62.149 72.222 23.84 22.59 44.95 5.52
87 88 1.071699 CTTTTGACTCCAACTCCGGGA 59.928 52.381 0.00 0.00 30.88 5.14
88 89 1.523758 CTTTTGACTCCAACTCCGGG 58.476 55.000 0.00 0.00 30.88 5.73
89 90 1.523758 CCTTTTGACTCCAACTCCGG 58.476 55.000 0.00 0.00 30.88 5.14
90 91 0.875059 GCCTTTTGACTCCAACTCCG 59.125 55.000 0.00 0.00 30.88 4.63
91 92 1.609072 GTGCCTTTTGACTCCAACTCC 59.391 52.381 0.00 0.00 30.88 3.85
92 93 1.264288 CGTGCCTTTTGACTCCAACTC 59.736 52.381 0.00 0.00 30.88 3.01
93 94 1.308998 CGTGCCTTTTGACTCCAACT 58.691 50.000 0.00 0.00 30.88 3.16
94 95 0.310854 CCGTGCCTTTTGACTCCAAC 59.689 55.000 0.00 0.00 30.88 3.77
95 96 0.181587 TCCGTGCCTTTTGACTCCAA 59.818 50.000 0.00 0.00 0.00 3.53
96 97 0.250295 CTCCGTGCCTTTTGACTCCA 60.250 55.000 0.00 0.00 0.00 3.86
97 98 1.578206 GCTCCGTGCCTTTTGACTCC 61.578 60.000 0.00 0.00 35.15 3.85
98 99 0.603975 AGCTCCGTGCCTTTTGACTC 60.604 55.000 0.00 0.00 44.23 3.36
99 100 0.886490 CAGCTCCGTGCCTTTTGACT 60.886 55.000 0.00 0.00 44.23 3.41
100 101 1.576421 CAGCTCCGTGCCTTTTGAC 59.424 57.895 0.00 0.00 44.23 3.18
101 102 1.600636 CCAGCTCCGTGCCTTTTGA 60.601 57.895 0.00 0.00 44.23 2.69
102 103 2.629656 CCCAGCTCCGTGCCTTTTG 61.630 63.158 0.00 0.00 44.23 2.44
103 104 2.282462 CCCAGCTCCGTGCCTTTT 60.282 61.111 0.00 0.00 44.23 2.27
104 105 2.351924 TTTCCCAGCTCCGTGCCTTT 62.352 55.000 0.00 0.00 44.23 3.11
105 106 2.754664 CTTTCCCAGCTCCGTGCCTT 62.755 60.000 0.00 0.00 44.23 4.35
106 107 3.249189 TTTCCCAGCTCCGTGCCT 61.249 61.111 0.00 0.00 44.23 4.75
107 108 2.747855 CTTTCCCAGCTCCGTGCC 60.748 66.667 0.00 0.00 44.23 5.01
108 109 1.743252 CTCTTTCCCAGCTCCGTGC 60.743 63.158 0.00 0.00 43.29 5.34
109 110 0.539051 ATCTCTTTCCCAGCTCCGTG 59.461 55.000 0.00 0.00 0.00 4.94
110 111 0.539051 CATCTCTTTCCCAGCTCCGT 59.461 55.000 0.00 0.00 0.00 4.69
111 112 0.813210 GCATCTCTTTCCCAGCTCCG 60.813 60.000 0.00 0.00 0.00 4.63
112 113 0.545646 AGCATCTCTTTCCCAGCTCC 59.454 55.000 0.00 0.00 0.00 4.70
113 114 1.474855 GGAGCATCTCTTTCCCAGCTC 60.475 57.143 0.00 0.00 45.65 4.09
114 115 0.545646 GGAGCATCTCTTTCCCAGCT 59.454 55.000 0.00 0.00 33.73 4.24
115 116 0.254178 TGGAGCATCTCTTTCCCAGC 59.746 55.000 0.00 0.00 33.73 4.85
116 117 1.746516 GCTGGAGCATCTCTTTCCCAG 60.747 57.143 0.00 0.00 42.88 4.45
117 118 0.254178 GCTGGAGCATCTCTTTCCCA 59.746 55.000 0.00 0.00 41.59 4.37
118 119 0.545646 AGCTGGAGCATCTCTTTCCC 59.454 55.000 0.65 0.00 45.16 3.97
119 120 1.474855 GGAGCTGGAGCATCTCTTTCC 60.475 57.143 0.00 0.00 45.16 3.13
120 121 1.485895 AGGAGCTGGAGCATCTCTTTC 59.514 52.381 0.00 0.00 45.16 2.62
121 122 1.485895 GAGGAGCTGGAGCATCTCTTT 59.514 52.381 0.00 0.00 45.16 2.52
122 123 1.122227 GAGGAGCTGGAGCATCTCTT 58.878 55.000 0.00 0.00 45.16 2.85
123 124 1.108727 CGAGGAGCTGGAGCATCTCT 61.109 60.000 14.87 2.67 45.16 3.10
124 125 1.363443 CGAGGAGCTGGAGCATCTC 59.637 63.158 0.00 6.34 45.16 2.75
125 126 0.106469 TACGAGGAGCTGGAGCATCT 60.106 55.000 0.00 0.00 45.16 2.90
126 127 0.965439 ATACGAGGAGCTGGAGCATC 59.035 55.000 0.00 0.00 45.16 3.91
127 128 1.418334 AATACGAGGAGCTGGAGCAT 58.582 50.000 0.00 0.00 45.16 3.79
128 129 1.195115 AAATACGAGGAGCTGGAGCA 58.805 50.000 0.00 0.00 45.16 4.26
129 130 2.317530 AAAATACGAGGAGCTGGAGC 57.682 50.000 0.00 0.00 42.49 4.70
130 131 4.099573 TCCTAAAAATACGAGGAGCTGGAG 59.900 45.833 0.00 0.00 34.36 3.86
131 132 4.028131 TCCTAAAAATACGAGGAGCTGGA 58.972 43.478 0.00 0.00 34.36 3.86
132 133 4.402056 TCCTAAAAATACGAGGAGCTGG 57.598 45.455 0.00 0.00 34.36 4.85
137 138 5.482878 ACTCCAACTCCTAAAAATACGAGGA 59.517 40.000 0.00 0.00 37.02 3.71
138 139 5.581085 CACTCCAACTCCTAAAAATACGAGG 59.419 44.000 0.00 0.00 0.00 4.63
139 140 6.310711 GTCACTCCAACTCCTAAAAATACGAG 59.689 42.308 0.00 0.00 0.00 4.18
140 141 6.014840 AGTCACTCCAACTCCTAAAAATACGA 60.015 38.462 0.00 0.00 0.00 3.43
141 142 6.164176 AGTCACTCCAACTCCTAAAAATACG 58.836 40.000 0.00 0.00 0.00 3.06
142 143 7.598189 GAGTCACTCCAACTCCTAAAAATAC 57.402 40.000 0.00 0.00 37.72 1.89
158 159 0.606673 GGCCCTGTTTGGAGTCACTC 60.607 60.000 0.00 0.00 38.35 3.51
159 160 1.062488 AGGCCCTGTTTGGAGTCACT 61.062 55.000 0.00 0.00 38.35 3.41
160 161 0.690762 TAGGCCCTGTTTGGAGTCAC 59.309 55.000 0.00 0.00 38.35 3.67
161 162 1.351017 CTTAGGCCCTGTTTGGAGTCA 59.649 52.381 0.00 0.00 38.35 3.41
162 163 1.950954 GCTTAGGCCCTGTTTGGAGTC 60.951 57.143 0.00 0.00 38.35 3.36
163 164 0.038310 GCTTAGGCCCTGTTTGGAGT 59.962 55.000 0.00 0.00 38.35 3.85
164 165 0.038166 TGCTTAGGCCCTGTTTGGAG 59.962 55.000 0.00 0.00 37.74 3.86
165 166 0.704076 ATGCTTAGGCCCTGTTTGGA 59.296 50.000 0.00 0.00 37.74 3.53
166 167 1.106285 GATGCTTAGGCCCTGTTTGG 58.894 55.000 0.00 0.00 37.74 3.28
167 168 0.734889 CGATGCTTAGGCCCTGTTTG 59.265 55.000 0.00 0.00 37.74 2.93
168 169 0.328258 ACGATGCTTAGGCCCTGTTT 59.672 50.000 0.00 0.00 37.74 2.83
169 170 0.392998 CACGATGCTTAGGCCCTGTT 60.393 55.000 0.00 0.00 37.74 3.16
170 171 1.221840 CACGATGCTTAGGCCCTGT 59.778 57.895 0.00 0.00 37.74 4.00
171 172 0.392998 AACACGATGCTTAGGCCCTG 60.393 55.000 0.00 0.00 37.74 4.45
172 173 0.328258 AAACACGATGCTTAGGCCCT 59.672 50.000 0.00 0.00 37.74 5.19
173 174 2.032680 TAAACACGATGCTTAGGCCC 57.967 50.000 0.00 0.00 37.74 5.80
174 175 8.195436 TCTATATATAAACACGATGCTTAGGCC 58.805 37.037 0.00 0.00 37.74 5.19
175 176 9.582431 TTCTATATATAAACACGATGCTTAGGC 57.418 33.333 0.00 0.00 39.26 3.93
274 277 6.347079 CGTAAAGGTGAGAAATTTAAGCACGA 60.347 38.462 9.88 0.00 0.00 4.35
301 304 4.631377 GCATTTTCCCCTTCTAATGTTTGC 59.369 41.667 0.00 0.00 32.10 3.68
390 393 3.203040 CCTCTCTTTCCCTCTCTCTCTCT 59.797 52.174 0.00 0.00 0.00 3.10
391 394 3.202151 TCCTCTCTTTCCCTCTCTCTCTC 59.798 52.174 0.00 0.00 0.00 3.20
418 421 1.559065 TTGGTAGGAAAGAGGGGGCG 61.559 60.000 0.00 0.00 0.00 6.13
419 422 0.256177 CTTGGTAGGAAAGAGGGGGC 59.744 60.000 0.00 0.00 0.00 5.80
430 440 2.161609 GCGAAATGTGGTTCTTGGTAGG 59.838 50.000 0.00 0.00 0.00 3.18
444 454 1.331756 CGAAGATTGGAGGGCGAAATG 59.668 52.381 0.00 0.00 0.00 2.32
463 473 0.649475 GTGTGCTAGAATCTGCAGCG 59.351 55.000 9.47 0.00 40.06 5.18
469 479 4.872691 CGATCAAAAGGTGTGCTAGAATCT 59.127 41.667 0.00 0.00 0.00 2.40
492 502 4.036852 CCAAACTGAGACTGGAGAAAAACC 59.963 45.833 0.00 0.00 31.38 3.27
524 536 0.884514 GAAACTTGCCCAGGAAGCTC 59.115 55.000 0.00 0.00 0.00 4.09
880 892 3.008835 TGAAAGATGCAGGATTGGGAG 57.991 47.619 0.00 0.00 0.00 4.30
890 902 4.157472 TGACACAACTTGTTGAAAGATGCA 59.843 37.500 18.82 0.00 39.17 3.96
895 907 5.291614 CCCAAATGACACAACTTGTTGAAAG 59.708 40.000 18.82 10.80 39.17 2.62
945 957 6.582672 GCAACATTTAGCTTGAGAAAACCTAC 59.417 38.462 0.00 0.00 0.00 3.18
1007 1019 2.503765 TGAGACCTCACACCAGTTTTCA 59.496 45.455 0.00 0.00 34.14 2.69
1062 1074 1.137614 GAGCTCACAGATCGCACGA 59.862 57.895 9.40 0.00 0.00 4.35
1072 1084 0.533951 ATGATCACGCAGAGCTCACA 59.466 50.000 17.77 3.29 32.67 3.58
1116 1128 2.128771 ACCTTGTGGCCACATATGAC 57.871 50.000 37.97 10.09 41.52 3.06
1203 1215 0.962356 CAGCGGAGAACCATGCCTTT 60.962 55.000 0.00 0.00 35.59 3.11
1246 1258 4.897509 ATGCCAAAGATGATATCTCGGA 57.102 40.909 3.98 0.00 39.08 4.55
1366 1378 1.202663 TCTAGACCTCGATCCAGACCG 60.203 57.143 0.00 0.00 0.00 4.79
1371 1383 3.367646 AACTGTCTAGACCTCGATCCA 57.632 47.619 20.11 0.00 0.00 3.41
1401 1413 3.321682 CCTTCTTGAATGGCTCCAAACAA 59.678 43.478 0.00 2.36 0.00 2.83
1430 1442 5.673568 GCAGTTTCATAAAGCTTATGTGCGA 60.674 40.000 0.00 0.00 38.13 5.10
1437 1449 7.452880 AACATCTGCAGTTTCATAAAGCTTA 57.547 32.000 14.67 0.00 0.00 3.09
1455 1467 0.919710 GTGAGGGGCCCTTAACATCT 59.080 55.000 29.49 8.16 31.76 2.90
1490 1502 1.623311 TCCTCTGCTTGATTTCGTCCA 59.377 47.619 0.00 0.00 0.00 4.02
1491 1503 2.275318 CTCCTCTGCTTGATTTCGTCC 58.725 52.381 0.00 0.00 0.00 4.79
1543 1555 1.004679 CAAACTTGGGTGGCATGGC 60.005 57.895 13.29 13.29 0.00 4.40
1558 1570 4.897076 TGTAGAGACCTGTTCAGGTACAAA 59.103 41.667 22.26 8.12 43.24 2.83
1604 1616 7.556844 AGTACATCAATCCAGATTCGTAAACT 58.443 34.615 0.00 0.00 0.00 2.66
1696 1710 9.701098 AATGATACATGAAAACAATATGGATGC 57.299 29.630 0.00 0.00 0.00 3.91
1724 1738 4.141914 CCTGACTTCCTCAATACCCACTAC 60.142 50.000 0.00 0.00 0.00 2.73
1786 1800 6.916360 TTTGAAGAAGCACCATTATCCTTT 57.084 33.333 0.00 0.00 0.00 3.11
1792 1806 4.082081 CCAGCATTTGAAGAAGCACCATTA 60.082 41.667 0.00 0.00 0.00 1.90
1834 1848 1.002134 CAGGGAAGACGCATTGGGT 60.002 57.895 6.00 6.00 0.00 4.51
1839 1853 1.078143 GAAGGCAGGGAAGACGCAT 60.078 57.895 0.00 0.00 0.00 4.73
1903 1917 1.490490 GATGGCAGATTGACCCTACCA 59.510 52.381 0.00 0.00 32.09 3.25
1904 1918 1.771255 AGATGGCAGATTGACCCTACC 59.229 52.381 0.00 0.00 0.00 3.18
1969 1983 4.127171 GTGCCTTCACTTCTTGTTGAGTA 58.873 43.478 0.00 0.00 40.03 2.59
2034 2048 6.179040 TCAGTACTACTTACTCCTTCAGTCC 58.821 44.000 0.00 0.00 39.18 3.85
2049 2063 9.416794 CATTCTGAATCATGGTATCAGTACTAC 57.583 37.037 17.20 0.00 41.04 2.73
2126 2140 2.016318 TGCATCCGATGATTCCAACAC 58.984 47.619 12.79 0.00 0.00 3.32
2135 2149 1.271871 ACCAAGGTTTGCATCCGATGA 60.272 47.619 12.79 0.00 0.00 2.92
2137 2151 2.799126 TACCAAGGTTTGCATCCGAT 57.201 45.000 0.00 0.00 0.00 4.18
2152 2166 4.041567 TCTCCTTCAGCTTCACAAATACCA 59.958 41.667 0.00 0.00 0.00 3.25
2155 2169 5.745312 TCTCTCCTTCAGCTTCACAAATA 57.255 39.130 0.00 0.00 0.00 1.40
2185 2199 0.320771 TCTGCCGCTTCAAACTCTCC 60.321 55.000 0.00 0.00 0.00 3.71
2248 2262 0.687354 AAGCGCTCCTTTCTTCCTCA 59.313 50.000 12.06 0.00 0.00 3.86
2269 2283 2.056481 CTTGGCTAGCTGCAATCGCC 62.056 60.000 15.72 8.40 45.15 5.54
2329 2343 3.354948 TGTAGTGCTTCCATCTGCATT 57.645 42.857 0.00 0.00 41.45 3.56
2464 2478 2.753452 CTGGAGTAGCCTTCGACAACTA 59.247 50.000 0.00 0.00 37.63 2.24
2578 2592 1.737838 TGGTGCTCGTCATGAAATCC 58.262 50.000 0.00 0.00 0.00 3.01
2690 2704 6.309737 GTCTCTTGAATGTTTTTGGCATCATC 59.690 38.462 0.00 0.00 0.00 2.92
2696 2710 5.333568 GCAATGTCTCTTGAATGTTTTTGGC 60.334 40.000 0.00 0.00 0.00 4.52
2700 2714 5.987347 CCAAGCAATGTCTCTTGAATGTTTT 59.013 36.000 3.79 0.00 41.50 2.43
2748 2762 5.924254 TGCTCAATTGATTGCTGAAAAGAAG 59.076 36.000 17.57 0.39 37.68 2.85
2821 2835 4.082125 CCTGAAGATTGTTTAGGCCACTT 58.918 43.478 5.01 0.00 0.00 3.16
2870 2884 1.371467 TCATCTTCAAGGGCCCTCAA 58.629 50.000 28.84 20.03 0.00 3.02
3031 3045 6.017192 ACTATGGAACTGAGAAGAGTTGGTA 58.983 40.000 0.00 0.00 36.27 3.25
3054 3068 7.865707 AGATCAGAGTGTGTAAATGTTTCAAC 58.134 34.615 0.00 0.00 0.00 3.18
3061 3075 4.940046 AGGCAAGATCAGAGTGTGTAAATG 59.060 41.667 0.00 0.00 0.00 2.32
3062 3076 5.171339 AGGCAAGATCAGAGTGTGTAAAT 57.829 39.130 0.00 0.00 0.00 1.40
3063 3077 4.623932 AGGCAAGATCAGAGTGTGTAAA 57.376 40.909 0.00 0.00 0.00 2.01
3064 3078 4.623932 AAGGCAAGATCAGAGTGTGTAA 57.376 40.909 0.00 0.00 0.00 2.41
3065 3079 4.623932 AAAGGCAAGATCAGAGTGTGTA 57.376 40.909 0.00 0.00 0.00 2.90
3073 3087 2.163815 CTGCTGGAAAAGGCAAGATCAG 59.836 50.000 0.00 0.00 38.02 2.90
3121 3135 1.872952 CTGGAAGCATTGTCGTTGTCA 59.127 47.619 0.00 0.00 0.00 3.58
3132 3146 0.541863 CGGGGACTAACTGGAAGCAT 59.458 55.000 0.00 0.00 37.60 3.79
3150 3168 5.115472 GCAATTTATAATCAACGCCACATCG 59.885 40.000 0.00 0.00 0.00 3.84
3179 3197 1.542915 CACAAGCTTGGATGTTCCCAG 59.457 52.381 29.18 0.86 37.53 4.45
3188 3206 4.517285 GGATGATCTTACACAAGCTTGGA 58.483 43.478 29.18 16.82 0.00 3.53
3220 3238 5.899547 TCCAGAGTTAGCCAGATTAGAATCA 59.100 40.000 5.11 0.00 37.89 2.57
3227 3245 2.507471 CCCTTCCAGAGTTAGCCAGATT 59.493 50.000 0.00 0.00 0.00 2.40
3269 3287 5.805728 ACGAGGTAAAAACAAGAGATGGAT 58.194 37.500 0.00 0.00 0.00 3.41
3270 3288 5.223449 ACGAGGTAAAAACAAGAGATGGA 57.777 39.130 0.00 0.00 0.00 3.41
3271 3289 5.689819 CAACGAGGTAAAAACAAGAGATGG 58.310 41.667 0.00 0.00 0.00 3.51
3272 3290 5.049405 AGCAACGAGGTAAAAACAAGAGATG 60.049 40.000 0.00 0.00 0.00 2.90
3273 3291 5.063880 AGCAACGAGGTAAAAACAAGAGAT 58.936 37.500 0.00 0.00 0.00 2.75
3274 3292 4.448210 AGCAACGAGGTAAAAACAAGAGA 58.552 39.130 0.00 0.00 0.00 3.10
3275 3293 4.813296 AGCAACGAGGTAAAAACAAGAG 57.187 40.909 0.00 0.00 0.00 2.85
3282 3300 7.708998 ACAAAAAGAATAGCAACGAGGTAAAA 58.291 30.769 0.00 0.00 33.24 1.52
3283 3301 7.266922 ACAAAAAGAATAGCAACGAGGTAAA 57.733 32.000 0.00 0.00 33.24 2.01
3364 3382 2.506644 TGAGCACCCATCAGATGATCAA 59.493 45.455 12.41 0.00 35.93 2.57
3365 3383 2.121129 TGAGCACCCATCAGATGATCA 58.879 47.619 12.41 0.00 36.47 2.92
3384 3402 6.088824 CACTTACAAGCTTGCTCCTAATTTG 58.911 40.000 26.27 12.30 0.00 2.32
3399 3417 7.482743 GCATTTCATCACATGTACACTTACAAG 59.517 37.037 0.00 0.00 41.64 3.16
3406 3424 5.097529 CCAAGCATTTCATCACATGTACAC 58.902 41.667 0.00 0.00 0.00 2.90
3470 3488 2.964464 ACTGGTTTGGCATCAACATCAA 59.036 40.909 4.59 0.00 31.78 2.57
3495 3513 9.692325 AATCTTAACATAGGAAAAGCAAGAGAT 57.308 29.630 0.00 0.00 0.00 2.75
3605 3623 8.642432 TGTTGGATATGGTTTGTTGAATGTTTA 58.358 29.630 0.00 0.00 0.00 2.01
3606 3624 7.504403 TGTTGGATATGGTTTGTTGAATGTTT 58.496 30.769 0.00 0.00 0.00 2.83
3675 3693 4.214310 TGAAGTCCAAAGGCATGAAGAAA 58.786 39.130 0.00 0.00 0.00 2.52
3710 3728 6.719370 TGGGCAGTCTAATTTGTTGAAGTTAT 59.281 34.615 0.00 0.00 0.00 1.89
3733 3751 2.354203 GCTGAAGTTACTCCCACTCTGG 60.354 54.545 0.00 0.00 37.25 3.86
3735 3753 1.546476 CGCTGAAGTTACTCCCACTCT 59.454 52.381 0.00 0.00 0.00 3.24
3736 3754 1.404315 CCGCTGAAGTTACTCCCACTC 60.404 57.143 0.00 0.00 0.00 3.51
3752 3770 2.570302 AGTTGGACCTTATGTTACCGCT 59.430 45.455 0.00 0.00 0.00 5.52
3756 3774 7.443259 TTTGCTAAGTTGGACCTTATGTTAC 57.557 36.000 0.00 0.00 0.00 2.50
3774 3792 7.609960 TCATTGCCACATAAGAAAATTTGCTA 58.390 30.769 0.00 0.00 0.00 3.49
3776 3794 6.724694 TCATTGCCACATAAGAAAATTTGC 57.275 33.333 0.00 0.00 0.00 3.68
3784 3802 9.639563 TCCTTATTAAATCATTGCCACATAAGA 57.360 29.630 0.00 0.00 0.00 2.10
3806 3824 7.487822 TGTTACTCAAATCATCTCTCTCCTT 57.512 36.000 0.00 0.00 0.00 3.36
3833 3851 5.535030 AGTGTATGTTGTGTGAGTGACTAGA 59.465 40.000 0.00 0.00 0.00 2.43
3848 3866 1.508632 GACGTGCACCAGTGTATGTT 58.491 50.000 12.15 0.36 43.68 2.71
3849 3867 0.666274 CGACGTGCACCAGTGTATGT 60.666 55.000 12.15 12.69 45.72 2.29
3850 3868 1.351430 CCGACGTGCACCAGTGTATG 61.351 60.000 12.15 6.55 38.04 2.39
3851 3869 1.080093 CCGACGTGCACCAGTGTAT 60.080 57.895 12.15 0.00 0.00 2.29
3852 3870 2.337170 CCGACGTGCACCAGTGTA 59.663 61.111 12.15 0.00 0.00 2.90
3853 3871 3.785189 GACCGACGTGCACCAGTGT 62.785 63.158 12.15 2.55 0.00 3.55
3854 3872 3.036084 GACCGACGTGCACCAGTG 61.036 66.667 12.15 0.00 0.00 3.66
3855 3873 4.295119 GGACCGACGTGCACCAGT 62.295 66.667 12.15 3.83 0.00 4.00
3856 3874 2.149803 TTAGGACCGACGTGCACCAG 62.150 60.000 12.15 0.00 31.56 4.00
3857 3875 1.746322 TTTAGGACCGACGTGCACCA 61.746 55.000 12.15 0.00 31.56 4.17
3858 3876 1.005867 TTTAGGACCGACGTGCACC 60.006 57.895 12.15 0.00 31.56 5.01
3859 3877 0.598158 TGTTTAGGACCGACGTGCAC 60.598 55.000 6.82 6.82 31.56 4.57
3860 3878 0.104487 TTGTTTAGGACCGACGTGCA 59.896 50.000 0.00 0.00 31.56 4.57
3861 3879 1.070376 GTTTGTTTAGGACCGACGTGC 60.070 52.381 0.00 0.00 0.00 5.34
3862 3880 1.190763 CGTTTGTTTAGGACCGACGTG 59.809 52.381 0.00 0.00 33.53 4.49
3863 3881 1.490621 CGTTTGTTTAGGACCGACGT 58.509 50.000 0.00 0.00 33.53 4.34
3864 3882 0.785979 CCGTTTGTTTAGGACCGACG 59.214 55.000 0.00 0.00 36.15 5.12
3865 3883 1.869774 ACCGTTTGTTTAGGACCGAC 58.130 50.000 0.00 0.00 0.00 4.79
3866 3884 2.618442 AACCGTTTGTTTAGGACCGA 57.382 45.000 0.00 0.00 31.47 4.69
3867 3885 3.696281 AAAACCGTTTGTTTAGGACCG 57.304 42.857 0.00 0.00 46.39 4.79
3885 3903 1.874872 CGTCGCAGAAAGGGGTAAAAA 59.125 47.619 0.00 0.00 39.69 1.94
3886 3904 1.515081 CGTCGCAGAAAGGGGTAAAA 58.485 50.000 0.00 0.00 39.69 1.52
3887 3905 0.320946 CCGTCGCAGAAAGGGGTAAA 60.321 55.000 0.00 0.00 39.69 2.01
3888 3906 1.294138 CCGTCGCAGAAAGGGGTAA 59.706 57.895 0.00 0.00 39.69 2.85
3889 3907 2.975536 CCGTCGCAGAAAGGGGTA 59.024 61.111 0.00 0.00 39.69 3.69
3890 3908 4.699522 GCCGTCGCAGAAAGGGGT 62.700 66.667 0.00 0.00 39.69 4.95
3891 3909 4.697756 TGCCGTCGCAGAAAGGGG 62.698 66.667 0.00 0.00 41.12 4.79
3900 3918 2.178273 GGTTCCAAATGCCGTCGC 59.822 61.111 0.00 0.00 0.00 5.19
3901 3919 2.478746 CGGTTCCAAATGCCGTCG 59.521 61.111 0.00 0.00 40.53 5.12
3905 3923 2.178273 GCGACGGTTCCAAATGCC 59.822 61.111 0.00 0.00 0.00 4.40
3906 3924 2.136196 TTGGCGACGGTTCCAAATGC 62.136 55.000 11.70 0.00 39.22 3.56
3907 3925 0.109781 CTTGGCGACGGTTCCAAATG 60.110 55.000 14.05 3.78 41.35 2.32
3908 3926 0.536460 ACTTGGCGACGGTTCCAAAT 60.536 50.000 14.05 4.79 41.35 2.32
3909 3927 1.153127 ACTTGGCGACGGTTCCAAA 60.153 52.632 14.05 2.94 41.35 3.28
3910 3928 1.890041 CACTTGGCGACGGTTCCAA 60.890 57.895 12.96 12.96 39.81 3.53
3911 3929 2.280524 CACTTGGCGACGGTTCCA 60.281 61.111 0.00 0.00 0.00 3.53
3912 3930 2.027625 CTCACTTGGCGACGGTTCC 61.028 63.158 0.00 0.00 0.00 3.62
3913 3931 1.300697 ACTCACTTGGCGACGGTTC 60.301 57.895 0.00 0.00 0.00 3.62
3914 3932 1.594293 CACTCACTTGGCGACGGTT 60.594 57.895 0.00 0.00 0.00 4.44
3915 3933 2.029073 CACTCACTTGGCGACGGT 59.971 61.111 0.00 0.00 0.00 4.83
3916 3934 2.029073 ACACTCACTTGGCGACGG 59.971 61.111 0.00 0.00 0.00 4.79
3917 3935 2.310233 CCACACTCACTTGGCGACG 61.310 63.158 0.00 0.00 0.00 5.12
3918 3936 1.961277 CCCACACTCACTTGGCGAC 60.961 63.158 0.00 0.00 0.00 5.19
3919 3937 2.425592 CCCACACTCACTTGGCGA 59.574 61.111 0.00 0.00 0.00 5.54
3920 3938 3.357079 GCCCACACTCACTTGGCG 61.357 66.667 0.00 0.00 31.55 5.69
3921 3939 2.985847 GGCCCACACTCACTTGGC 60.986 66.667 0.00 0.00 41.42 4.52
3922 3940 0.327924 TATGGCCCACACTCACTTGG 59.672 55.000 0.00 0.00 0.00 3.61
3923 3941 1.278985 TCTATGGCCCACACTCACTTG 59.721 52.381 0.00 0.00 0.00 3.16
3924 3942 1.556911 CTCTATGGCCCACACTCACTT 59.443 52.381 0.00 0.00 0.00 3.16
3925 3943 1.198713 CTCTATGGCCCACACTCACT 58.801 55.000 0.00 0.00 0.00 3.41
3926 3944 0.179000 CCTCTATGGCCCACACTCAC 59.821 60.000 0.00 0.00 0.00 3.51
3927 3945 0.982852 CCCTCTATGGCCCACACTCA 60.983 60.000 0.00 0.00 0.00 3.41
3928 3946 1.700042 CCCCTCTATGGCCCACACTC 61.700 65.000 0.00 0.00 0.00 3.51
3929 3947 1.694169 CCCCTCTATGGCCCACACT 60.694 63.158 0.00 0.00 0.00 3.55
3930 3948 1.984288 GACCCCTCTATGGCCCACAC 61.984 65.000 0.00 0.00 0.00 3.82
3931 3949 1.692749 GACCCCTCTATGGCCCACA 60.693 63.158 0.00 0.00 0.00 4.17
3932 3950 2.452937 GGACCCCTCTATGGCCCAC 61.453 68.421 0.00 0.00 0.00 4.61
3933 3951 2.039831 GGACCCCTCTATGGCCCA 60.040 66.667 0.00 0.00 0.00 5.36
3934 3952 1.386057 AAGGACCCCTCTATGGCCC 60.386 63.158 0.00 0.00 30.89 5.80
3935 3953 1.419720 GGAAGGACCCCTCTATGGCC 61.420 65.000 0.00 0.00 30.89 5.36
3936 3954 2.146779 GGAAGGACCCCTCTATGGC 58.853 63.158 0.00 0.00 30.89 4.40
3946 3964 2.346365 GGTCGTGTGGGAAGGACC 59.654 66.667 0.78 0.78 45.07 4.46
3947 3965 2.346365 GGGTCGTGTGGGAAGGAC 59.654 66.667 0.00 0.00 34.86 3.85
3948 3966 2.122769 TGGGTCGTGTGGGAAGGA 60.123 61.111 0.00 0.00 0.00 3.36
3949 3967 1.764571 TTCTGGGTCGTGTGGGAAGG 61.765 60.000 0.00 0.00 0.00 3.46
3950 3968 0.107831 TTTCTGGGTCGTGTGGGAAG 59.892 55.000 0.00 0.00 0.00 3.46
3951 3969 0.179040 GTTTCTGGGTCGTGTGGGAA 60.179 55.000 0.00 0.00 0.00 3.97
3952 3970 1.448497 GTTTCTGGGTCGTGTGGGA 59.552 57.895 0.00 0.00 0.00 4.37
3953 3971 1.599797 GGTTTCTGGGTCGTGTGGG 60.600 63.158 0.00 0.00 0.00 4.61
3954 3972 1.959226 CGGTTTCTGGGTCGTGTGG 60.959 63.158 0.00 0.00 0.00 4.17
3955 3973 0.032403 TACGGTTTCTGGGTCGTGTG 59.968 55.000 0.00 0.00 37.10 3.82
3956 3974 0.316204 CTACGGTTTCTGGGTCGTGT 59.684 55.000 0.00 0.00 37.10 4.49
3957 3975 0.389426 CCTACGGTTTCTGGGTCGTG 60.389 60.000 0.00 0.00 37.10 4.35
3958 3976 1.538687 CCCTACGGTTTCTGGGTCGT 61.539 60.000 0.00 0.00 39.30 4.34
3959 3977 1.217244 CCCTACGGTTTCTGGGTCG 59.783 63.158 0.00 0.00 35.13 4.79
3960 3978 0.906282 TCCCCTACGGTTTCTGGGTC 60.906 60.000 0.00 0.00 38.03 4.46
3961 3979 0.253020 ATCCCCTACGGTTTCTGGGT 60.253 55.000 0.00 0.00 38.03 4.51
3962 3980 1.692519 CTATCCCCTACGGTTTCTGGG 59.307 57.143 0.00 0.00 39.37 4.45
3963 3981 1.692519 CCTATCCCCTACGGTTTCTGG 59.307 57.143 0.00 0.00 0.00 3.86
3964 3982 1.692519 CCCTATCCCCTACGGTTTCTG 59.307 57.143 0.00 0.00 0.00 3.02
3965 3983 1.577242 TCCCTATCCCCTACGGTTTCT 59.423 52.381 0.00 0.00 0.00 2.52
3966 3984 1.969208 CTCCCTATCCCCTACGGTTTC 59.031 57.143 0.00 0.00 0.00 2.78
3967 3985 2.038534 GCTCCCTATCCCCTACGGTTT 61.039 57.143 0.00 0.00 0.00 3.27
3968 3986 0.471401 GCTCCCTATCCCCTACGGTT 60.471 60.000 0.00 0.00 0.00 4.44
3969 3987 1.155624 GCTCCCTATCCCCTACGGT 59.844 63.158 0.00 0.00 0.00 4.83
3970 3988 1.609794 GGCTCCCTATCCCCTACGG 60.610 68.421 0.00 0.00 0.00 4.02
3971 3989 0.178929 AAGGCTCCCTATCCCCTACG 60.179 60.000 0.00 0.00 31.13 3.51
3972 3990 1.132817 TCAAGGCTCCCTATCCCCTAC 60.133 57.143 0.00 0.00 31.13 3.18
3973 3991 1.251136 TCAAGGCTCCCTATCCCCTA 58.749 55.000 0.00 0.00 31.13 3.53
3974 3992 0.575333 ATCAAGGCTCCCTATCCCCT 59.425 55.000 0.00 0.00 31.13 4.79
3975 3993 0.695347 CATCAAGGCTCCCTATCCCC 59.305 60.000 0.00 0.00 31.13 4.81
3976 3994 0.037447 GCATCAAGGCTCCCTATCCC 59.963 60.000 0.00 0.00 31.13 3.85
3977 3995 0.767375 TGCATCAAGGCTCCCTATCC 59.233 55.000 0.00 0.00 31.13 2.59
3978 3996 2.875094 ATGCATCAAGGCTCCCTATC 57.125 50.000 0.00 0.00 31.13 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.