Multiple sequence alignment - TraesCS1D01G135600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G135600 chr1D 100.000 2171 0 0 1 2171 178673108 178675278 0.000000e+00 4010
1 TraesCS1D01G135600 chr3B 95.073 1847 81 3 7 1843 101916562 101914716 0.000000e+00 2898
2 TraesCS1D01G135600 chr3B 85.933 327 38 3 1846 2165 371194722 371195047 2.060000e-90 342
3 TraesCS1D01G135600 chrUn 94.911 1847 82 4 7 1843 216513223 216515067 0.000000e+00 2880
4 TraesCS1D01G135600 chrUn 94.911 1847 82 6 7 1843 286270160 286268316 0.000000e+00 2880
5 TraesCS1D01G135600 chr6D 94.857 1847 85 3 7 1843 168263052 168261206 0.000000e+00 2876
6 TraesCS1D01G135600 chr6D 84.000 325 36 11 1853 2168 4540724 4541041 4.530000e-77 298
7 TraesCS1D01G135600 chr1B 94.748 1847 87 3 7 1843 633748512 633750358 0.000000e+00 2865
8 TraesCS1D01G135600 chr5D 94.748 1847 86 4 7 1843 503223601 503221756 0.000000e+00 2863
9 TraesCS1D01G135600 chr5D 94.640 1847 89 3 7 1843 503273489 503275335 0.000000e+00 2854
10 TraesCS1D01G135600 chr5D 94.563 1030 46 5 824 1843 446178863 446177834 0.000000e+00 1583
11 TraesCS1D01G135600 chr5D 83.283 329 38 10 1853 2171 451155982 451155661 9.810000e-74 287
12 TraesCS1D01G135600 chr5D 83.333 324 39 8 1853 2167 66984065 66983748 3.530000e-73 285
13 TraesCS1D01G135600 chr3A 94.745 1846 86 6 7 1842 164858680 164860524 0.000000e+00 2861
14 TraesCS1D01G135600 chr3A 94.694 1847 88 5 7 1843 66012239 66014085 0.000000e+00 2859
15 TraesCS1D01G135600 chr3A 93.899 1639 82 4 7 1635 495094881 495093251 0.000000e+00 2457
16 TraesCS1D01G135600 chr3A 83.939 330 41 7 1846 2167 360162432 360162757 2.710000e-79 305
17 TraesCS1D01G135600 chr3A 83.283 329 42 9 1846 2166 44523736 44524059 7.580000e-75 291
18 TraesCS1D01G135600 chr2B 93.838 1639 82 5 7 1635 449211669 449210040 0.000000e+00 2449
19 TraesCS1D01G135600 chr1A 94.741 1236 55 2 618 1843 554517023 554515788 0.000000e+00 1914
20 TraesCS1D01G135600 chr1A 82.789 337 46 6 1842 2171 488688342 488688011 7.580000e-75 291
21 TraesCS1D01G135600 chr7B 90.541 1258 108 8 7 1259 732564687 732565938 0.000000e+00 1653
22 TraesCS1D01G135600 chr3D 83.283 329 42 6 1846 2166 32130902 32131225 7.580000e-75 291
23 TraesCS1D01G135600 chr6B 83.333 318 46 5 1853 2168 173567520 173567832 9.810000e-74 287


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G135600 chr1D 178673108 178675278 2170 False 4010 4010 100.000 1 2171 1 chr1D.!!$F1 2170
1 TraesCS1D01G135600 chr3B 101914716 101916562 1846 True 2898 2898 95.073 7 1843 1 chr3B.!!$R1 1836
2 TraesCS1D01G135600 chrUn 216513223 216515067 1844 False 2880 2880 94.911 7 1843 1 chrUn.!!$F1 1836
3 TraesCS1D01G135600 chrUn 286268316 286270160 1844 True 2880 2880 94.911 7 1843 1 chrUn.!!$R1 1836
4 TraesCS1D01G135600 chr6D 168261206 168263052 1846 True 2876 2876 94.857 7 1843 1 chr6D.!!$R1 1836
5 TraesCS1D01G135600 chr1B 633748512 633750358 1846 False 2865 2865 94.748 7 1843 1 chr1B.!!$F1 1836
6 TraesCS1D01G135600 chr5D 503221756 503223601 1845 True 2863 2863 94.748 7 1843 1 chr5D.!!$R4 1836
7 TraesCS1D01G135600 chr5D 503273489 503275335 1846 False 2854 2854 94.640 7 1843 1 chr5D.!!$F1 1836
8 TraesCS1D01G135600 chr5D 446177834 446178863 1029 True 1583 1583 94.563 824 1843 1 chr5D.!!$R2 1019
9 TraesCS1D01G135600 chr3A 164858680 164860524 1844 False 2861 2861 94.745 7 1842 1 chr3A.!!$F3 1835
10 TraesCS1D01G135600 chr3A 66012239 66014085 1846 False 2859 2859 94.694 7 1843 1 chr3A.!!$F2 1836
11 TraesCS1D01G135600 chr3A 495093251 495094881 1630 True 2457 2457 93.899 7 1635 1 chr3A.!!$R1 1628
12 TraesCS1D01G135600 chr2B 449210040 449211669 1629 True 2449 2449 93.838 7 1635 1 chr2B.!!$R1 1628
13 TraesCS1D01G135600 chr1A 554515788 554517023 1235 True 1914 1914 94.741 618 1843 1 chr1A.!!$R2 1225
14 TraesCS1D01G135600 chr7B 732564687 732565938 1251 False 1653 1653 90.541 7 1259 1 chr7B.!!$F1 1252

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
439 441 1.148027 TCTGACTCCTCCACTCCAGTT 59.852 52.381 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2028 2041 0.035056 AGTTCTGCGGCCTTAAGCAT 60.035 50.0 0.0 0.0 46.5 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.098807 GGTTCTCATCCTTCAGAGACTACC 59.901 50.000 0.00 0.00 40.37 3.18
58 59 6.611785 AGACTACCAGTGTAATAGGAGCATA 58.388 40.000 0.00 0.00 0.00 3.14
135 136 9.947669 GAATCAAATCAGATGGTTCTATTTCTG 57.052 33.333 0.00 0.00 35.50 3.02
157 158 4.102524 TGAACCTTTCTGACTTGCTCCTAA 59.897 41.667 0.00 0.00 0.00 2.69
205 206 4.156455 AGTCAGTCATTCACAACCACTT 57.844 40.909 0.00 0.00 0.00 3.16
241 242 8.465201 TCCTCGAAAAGTTAAGGATTAGTAGTC 58.535 37.037 0.00 0.00 33.00 2.59
383 385 5.534207 TGAAAGTCTCATGCATGGTTTTT 57.466 34.783 25.97 19.22 0.00 1.94
428 430 4.601084 TCCTATTTTCGACTCTGACTCCT 58.399 43.478 0.00 0.00 0.00 3.69
439 441 1.148027 TCTGACTCCTCCACTCCAGTT 59.852 52.381 0.00 0.00 0.00 3.16
464 466 5.418310 TGCTTTTCTTTCTGTTACTTCGG 57.582 39.130 0.00 0.00 0.00 4.30
582 584 5.517924 TCTTAGCATGATTTTGGGGAATCA 58.482 37.500 0.00 3.12 46.64 2.57
612 614 7.083858 GCTATTACTCAAACAAGCATGAAACA 58.916 34.615 0.00 0.00 32.25 2.83
628 630 6.866770 GCATGAAACATATGCTTGCATATTCT 59.133 34.615 21.29 11.26 45.64 2.40
644 646 5.477984 GCATATTCTTCCATAGGGCAAATCA 59.522 40.000 0.00 0.00 0.00 2.57
654 656 7.168219 TCCATAGGGCAAATCAGATATGTAAC 58.832 38.462 0.00 0.00 0.00 2.50
658 660 9.896645 ATAGGGCAAATCAGATATGTAACTATG 57.103 33.333 0.00 0.00 0.00 2.23
822 824 5.912892 TGCAGGATTATACACGAAAGATCA 58.087 37.500 0.00 0.00 0.00 2.92
837 839 6.314896 ACGAAAGATCATTTTTAGGCTCTCTG 59.685 38.462 0.00 0.00 0.00 3.35
862 864 3.515562 AGCCCTATGTCTCTTATCCCTG 58.484 50.000 0.00 0.00 0.00 4.45
967 969 6.435277 TGGTTTCAATAGGACTACTTACGAGT 59.565 38.462 0.00 0.00 39.97 4.18
971 973 8.565896 TTCAATAGGACTACTTACGAGTGTTA 57.434 34.615 0.00 0.00 36.60 2.41
1012 1024 8.425577 AATCAAGTTATTAATGACTGGACGAG 57.574 34.615 17.29 4.12 30.28 4.18
1015 1027 6.525578 AGTTATTAATGACTGGACGAGACA 57.474 37.500 11.78 0.00 0.00 3.41
1026 1038 5.607477 ACTGGACGAGACAAAGAAATAACA 58.393 37.500 0.00 0.00 0.00 2.41
1090 1102 3.637998 ATTCCATCGAATTGAGCATGC 57.362 42.857 10.51 10.51 35.00 4.06
1091 1103 2.336945 TCCATCGAATTGAGCATGCT 57.663 45.000 22.92 22.92 0.00 3.79
1115 1127 7.327275 GCTTGTATGTGTGATAGCATCTACTAC 59.673 40.741 0.00 0.00 0.00 2.73
1136 1148 5.456921 ACACCAGGAATATCAATGAACCT 57.543 39.130 0.00 0.00 0.00 3.50
1173 1186 4.141597 GCTCAGGATACCCTCTTTTAGCTT 60.142 45.833 0.00 0.00 42.02 3.74
1181 1194 3.775866 ACCCTCTTTTAGCTTCTAGGTCC 59.224 47.826 0.00 0.00 0.00 4.46
1211 1224 9.716556 TCTTAGTTCAAGATCCCTCTTACTAAT 57.283 33.333 9.49 0.00 39.51 1.73
1296 1309 9.904198 TGAACTTATAATCATGGAATCAACTCA 57.096 29.630 0.00 0.00 0.00 3.41
1305 1318 5.826208 TCATGGAATCAACTCAATCATCAGG 59.174 40.000 0.00 0.00 0.00 3.86
1335 1348 3.104512 TCATTCCATACCGAACCAGACT 58.895 45.455 0.00 0.00 0.00 3.24
1345 1358 1.603802 CGAACCAGACTGTGCACATTT 59.396 47.619 22.00 10.67 0.00 2.32
1358 1371 9.793252 GACTGTGCACATTTTTATTATGAGAAT 57.207 29.630 22.00 0.00 0.00 2.40
1386 1399 6.205658 GTCATTCAAGCCTATGGAAATAGGAC 59.794 42.308 14.61 6.93 45.08 3.85
1390 1403 5.903010 TCAAGCCTATGGAAATAGGACACTA 59.097 40.000 14.61 0.00 45.08 2.74
1392 1405 7.733047 TCAAGCCTATGGAAATAGGACACTATA 59.267 37.037 14.61 0.00 45.08 1.31
1475 1488 7.372260 AGACCTGCTTTTGACATATCTATCT 57.628 36.000 0.00 0.00 0.00 1.98
1644 1657 4.148838 GTCTGACTCAGGCCTATATGACT 58.851 47.826 3.98 0.00 28.61 3.41
1796 1809 5.128919 ACTCAAAATCTTGTGCTGAAGAGT 58.871 37.500 4.62 0.00 35.44 3.24
1832 1845 5.006386 GTCCTCTTCAAGGCATAATATGGG 58.994 45.833 2.13 0.00 45.78 4.00
1843 1856 5.194334 AGGCATAATATGGGGAATGCTCATA 59.806 40.000 0.00 0.00 35.57 2.15
1844 1857 5.300286 GGCATAATATGGGGAATGCTCATAC 59.700 44.000 0.00 0.00 35.57 2.39
1845 1858 5.300286 GCATAATATGGGGAATGCTCATACC 59.700 44.000 0.00 0.00 32.80 2.73
1846 1859 6.666678 CATAATATGGGGAATGCTCATACCT 58.333 40.000 0.00 0.00 0.00 3.08
1847 1860 4.851639 ATATGGGGAATGCTCATACCTC 57.148 45.455 0.00 0.00 0.00 3.85
1848 1861 1.140312 TGGGGAATGCTCATACCTCC 58.860 55.000 0.00 0.00 0.00 4.30
1849 1862 0.035458 GGGGAATGCTCATACCTCCG 59.965 60.000 0.00 0.00 0.00 4.63
1850 1863 0.759346 GGGAATGCTCATACCTCCGT 59.241 55.000 0.00 0.00 0.00 4.69
1851 1864 1.141053 GGGAATGCTCATACCTCCGTT 59.859 52.381 0.00 0.00 0.00 4.44
1852 1865 2.367567 GGGAATGCTCATACCTCCGTTA 59.632 50.000 0.00 0.00 0.00 3.18
1853 1866 3.555168 GGGAATGCTCATACCTCCGTTAG 60.555 52.174 0.00 0.00 0.00 2.34
1854 1867 3.069729 GGAATGCTCATACCTCCGTTAGT 59.930 47.826 0.00 0.00 0.00 2.24
1855 1868 3.735237 ATGCTCATACCTCCGTTAGTG 57.265 47.619 0.00 0.00 0.00 2.74
1856 1869 2.730382 TGCTCATACCTCCGTTAGTGA 58.270 47.619 0.00 0.00 0.00 3.41
1857 1870 2.688446 TGCTCATACCTCCGTTAGTGAG 59.312 50.000 0.00 0.00 36.92 3.51
1858 1871 3.357166 CTCATACCTCCGTTAGTGAGC 57.643 52.381 0.00 0.00 0.00 4.26
1859 1872 2.688446 CTCATACCTCCGTTAGTGAGCA 59.312 50.000 0.00 0.00 0.00 4.26
1860 1873 2.688446 TCATACCTCCGTTAGTGAGCAG 59.312 50.000 0.00 0.00 0.00 4.24
1861 1874 1.471119 TACCTCCGTTAGTGAGCAGG 58.529 55.000 0.00 0.00 0.00 4.85
1862 1875 1.153549 CCTCCGTTAGTGAGCAGGC 60.154 63.158 0.00 0.00 0.00 4.85
1863 1876 1.591703 CTCCGTTAGTGAGCAGGCA 59.408 57.895 0.00 0.00 0.00 4.75
1864 1877 0.737715 CTCCGTTAGTGAGCAGGCAC 60.738 60.000 0.00 0.00 39.05 5.01
1866 1879 0.737715 CCGTTAGTGAGCAGGCACTC 60.738 60.000 9.70 0.95 45.54 3.51
1867 1880 0.038251 CGTTAGTGAGCAGGCACTCA 60.038 55.000 9.70 6.18 45.54 3.41
1872 1885 3.545724 TGAGCAGGCACTCAAGATG 57.454 52.632 7.68 0.00 43.59 2.90
1873 1886 0.689055 TGAGCAGGCACTCAAGATGT 59.311 50.000 7.68 0.00 43.59 3.06
1874 1887 1.338484 TGAGCAGGCACTCAAGATGTC 60.338 52.381 7.68 0.00 43.59 3.06
1875 1888 0.982704 AGCAGGCACTCAAGATGTCT 59.017 50.000 0.00 0.00 34.60 3.41
1877 1890 1.735386 CAGGCACTCAAGATGTCTGG 58.265 55.000 0.00 0.00 44.43 3.86
1878 1891 0.617413 AGGCACTCAAGATGTCTGGG 59.383 55.000 0.00 0.00 28.62 4.45
1879 1892 0.326264 GGCACTCAAGATGTCTGGGT 59.674 55.000 0.00 0.00 0.00 4.51
1880 1893 1.555075 GGCACTCAAGATGTCTGGGTA 59.445 52.381 0.00 0.00 0.00 3.69
1881 1894 2.622436 GCACTCAAGATGTCTGGGTAC 58.378 52.381 0.00 0.00 0.00 3.34
1882 1895 2.234908 GCACTCAAGATGTCTGGGTACT 59.765 50.000 0.00 0.00 0.00 2.73
1883 1896 3.854666 CACTCAAGATGTCTGGGTACTG 58.145 50.000 0.00 0.00 0.00 2.74
1884 1897 2.234908 ACTCAAGATGTCTGGGTACTGC 59.765 50.000 0.00 0.00 0.00 4.40
1885 1898 2.234661 CTCAAGATGTCTGGGTACTGCA 59.765 50.000 0.00 0.00 0.00 4.41
1886 1899 2.637382 TCAAGATGTCTGGGTACTGCAA 59.363 45.455 0.00 0.00 0.00 4.08
1887 1900 3.264193 TCAAGATGTCTGGGTACTGCAAT 59.736 43.478 0.00 0.00 0.00 3.56
1888 1901 3.550437 AGATGTCTGGGTACTGCAATC 57.450 47.619 0.00 0.00 0.00 2.67
1889 1902 2.840038 AGATGTCTGGGTACTGCAATCA 59.160 45.455 0.00 0.00 0.00 2.57
1890 1903 3.457380 AGATGTCTGGGTACTGCAATCAT 59.543 43.478 0.00 0.00 0.00 2.45
1891 1904 3.719268 TGTCTGGGTACTGCAATCATT 57.281 42.857 0.00 0.00 0.00 2.57
1892 1905 3.346315 TGTCTGGGTACTGCAATCATTG 58.654 45.455 0.00 0.00 0.00 2.82
1893 1906 3.008923 TGTCTGGGTACTGCAATCATTGA 59.991 43.478 0.00 0.00 0.00 2.57
1894 1907 4.009675 GTCTGGGTACTGCAATCATTGAA 58.990 43.478 0.00 0.00 0.00 2.69
1895 1908 4.641989 GTCTGGGTACTGCAATCATTGAAT 59.358 41.667 0.00 0.00 0.00 2.57
1896 1909 4.883585 TCTGGGTACTGCAATCATTGAATC 59.116 41.667 0.00 0.00 0.00 2.52
1897 1910 4.598022 TGGGTACTGCAATCATTGAATCA 58.402 39.130 0.00 0.00 0.00 2.57
1898 1911 4.641541 TGGGTACTGCAATCATTGAATCAG 59.358 41.667 0.00 1.73 0.00 2.90
1899 1912 4.641989 GGGTACTGCAATCATTGAATCAGT 59.358 41.667 12.19 12.19 36.17 3.41
1900 1913 5.126061 GGGTACTGCAATCATTGAATCAGTT 59.874 40.000 12.63 1.27 34.69 3.16
1901 1914 6.318648 GGGTACTGCAATCATTGAATCAGTTA 59.681 38.462 12.63 0.55 34.69 2.24
1902 1915 7.412853 GGTACTGCAATCATTGAATCAGTTAG 58.587 38.462 12.63 3.82 34.69 2.34
1903 1916 6.446781 ACTGCAATCATTGAATCAGTTAGG 57.553 37.500 0.00 0.00 30.64 2.69
1904 1917 6.182627 ACTGCAATCATTGAATCAGTTAGGA 58.817 36.000 0.00 0.00 30.64 2.94
1905 1918 6.318144 ACTGCAATCATTGAATCAGTTAGGAG 59.682 38.462 0.00 0.00 30.64 3.69
1906 1919 6.182627 TGCAATCATTGAATCAGTTAGGAGT 58.817 36.000 0.00 0.00 0.00 3.85
1907 1920 6.660521 TGCAATCATTGAATCAGTTAGGAGTT 59.339 34.615 0.00 0.00 0.00 3.01
1908 1921 7.828717 TGCAATCATTGAATCAGTTAGGAGTTA 59.171 33.333 0.00 0.00 0.00 2.24
1909 1922 8.677300 GCAATCATTGAATCAGTTAGGAGTTAA 58.323 33.333 0.00 0.00 0.00 2.01
1917 1930 9.658799 TGAATCAGTTAGGAGTTAATCTTTCAG 57.341 33.333 0.00 0.00 0.00 3.02
1918 1931 9.877178 GAATCAGTTAGGAGTTAATCTTTCAGA 57.123 33.333 0.00 0.00 0.00 3.27
1920 1933 9.829507 ATCAGTTAGGAGTTAATCTTTCAGATG 57.170 33.333 0.00 0.00 34.65 2.90
1921 1934 9.035890 TCAGTTAGGAGTTAATCTTTCAGATGA 57.964 33.333 0.00 0.00 34.65 2.92
1922 1935 9.658799 CAGTTAGGAGTTAATCTTTCAGATGAA 57.341 33.333 0.00 0.00 34.65 2.57
1923 1936 9.883142 AGTTAGGAGTTAATCTTTCAGATGAAG 57.117 33.333 0.00 0.00 34.65 3.02
1924 1937 9.660180 GTTAGGAGTTAATCTTTCAGATGAAGT 57.340 33.333 0.00 0.00 34.65 3.01
1927 1940 9.041354 AGGAGTTAATCTTTCAGATGAAGTAGT 57.959 33.333 0.00 0.00 34.65 2.73
1928 1941 9.092876 GGAGTTAATCTTTCAGATGAAGTAGTG 57.907 37.037 0.00 0.00 34.65 2.74
1929 1942 9.862371 GAGTTAATCTTTCAGATGAAGTAGTGA 57.138 33.333 0.00 0.00 34.65 3.41
1934 1947 8.715191 ATCTTTCAGATGAAGTAGTGATTGAC 57.285 34.615 0.00 0.00 32.80 3.18
1935 1948 7.099764 TCTTTCAGATGAAGTAGTGATTGACC 58.900 38.462 0.00 0.00 35.21 4.02
1936 1949 4.998788 TCAGATGAAGTAGTGATTGACCG 58.001 43.478 0.00 0.00 0.00 4.79
1937 1950 4.705023 TCAGATGAAGTAGTGATTGACCGA 59.295 41.667 0.00 0.00 0.00 4.69
1938 1951 5.039984 CAGATGAAGTAGTGATTGACCGAG 58.960 45.833 0.00 0.00 0.00 4.63
1939 1952 4.707448 AGATGAAGTAGTGATTGACCGAGT 59.293 41.667 0.00 0.00 0.00 4.18
1940 1953 4.866508 TGAAGTAGTGATTGACCGAGTT 57.133 40.909 0.00 0.00 0.00 3.01
1941 1954 4.806330 TGAAGTAGTGATTGACCGAGTTC 58.194 43.478 0.00 0.00 0.00 3.01
1942 1955 4.523173 TGAAGTAGTGATTGACCGAGTTCT 59.477 41.667 0.00 0.00 0.00 3.01
1943 1956 4.705337 AGTAGTGATTGACCGAGTTCTC 57.295 45.455 0.00 0.00 0.00 2.87
1944 1957 3.444388 AGTAGTGATTGACCGAGTTCTCC 59.556 47.826 0.00 0.00 0.00 3.71
1945 1958 2.248248 AGTGATTGACCGAGTTCTCCA 58.752 47.619 0.00 0.00 0.00 3.86
1946 1959 2.232452 AGTGATTGACCGAGTTCTCCAG 59.768 50.000 0.00 0.00 0.00 3.86
1947 1960 2.028930 GTGATTGACCGAGTTCTCCAGT 60.029 50.000 0.00 0.00 0.00 4.00
1948 1961 2.231478 TGATTGACCGAGTTCTCCAGTC 59.769 50.000 9.36 9.36 0.00 3.51
1949 1962 1.699730 TTGACCGAGTTCTCCAGTCA 58.300 50.000 12.99 12.99 35.75 3.41
1950 1963 0.959553 TGACCGAGTTCTCCAGTCAC 59.040 55.000 12.99 0.00 32.75 3.67
1951 1964 1.249407 GACCGAGTTCTCCAGTCACT 58.751 55.000 10.69 0.00 0.00 3.41
1952 1965 1.614413 GACCGAGTTCTCCAGTCACTT 59.386 52.381 10.69 0.00 0.00 3.16
1953 1966 1.614413 ACCGAGTTCTCCAGTCACTTC 59.386 52.381 0.00 0.00 0.00 3.01
1954 1967 1.067495 CCGAGTTCTCCAGTCACTTCC 60.067 57.143 0.00 0.00 0.00 3.46
1955 1968 1.613925 CGAGTTCTCCAGTCACTTCCA 59.386 52.381 0.00 0.00 0.00 3.53
1956 1969 2.608261 CGAGTTCTCCAGTCACTTCCAC 60.608 54.545 0.00 0.00 0.00 4.02
1957 1970 1.694696 AGTTCTCCAGTCACTTCCACC 59.305 52.381 0.00 0.00 0.00 4.61
1958 1971 1.416401 GTTCTCCAGTCACTTCCACCA 59.584 52.381 0.00 0.00 0.00 4.17
1959 1972 1.801242 TCTCCAGTCACTTCCACCAA 58.199 50.000 0.00 0.00 0.00 3.67
1960 1973 1.694150 TCTCCAGTCACTTCCACCAAG 59.306 52.381 0.00 0.00 38.21 3.61
1961 1974 0.108585 TCCAGTCACTTCCACCAAGC 59.891 55.000 0.00 0.00 35.17 4.01
1962 1975 0.109342 CCAGTCACTTCCACCAAGCT 59.891 55.000 0.00 0.00 35.17 3.74
1963 1976 1.347707 CCAGTCACTTCCACCAAGCTA 59.652 52.381 0.00 0.00 35.17 3.32
1964 1977 2.417719 CAGTCACTTCCACCAAGCTAC 58.582 52.381 0.00 0.00 35.17 3.58
1965 1978 2.047061 AGTCACTTCCACCAAGCTACA 58.953 47.619 0.00 0.00 35.17 2.74
1966 1979 2.438021 AGTCACTTCCACCAAGCTACAA 59.562 45.455 0.00 0.00 35.17 2.41
1967 1980 2.808543 GTCACTTCCACCAAGCTACAAG 59.191 50.000 0.00 0.00 35.17 3.16
1968 1981 2.703536 TCACTTCCACCAAGCTACAAGA 59.296 45.455 0.00 0.00 35.17 3.02
1969 1982 3.135712 TCACTTCCACCAAGCTACAAGAA 59.864 43.478 0.00 0.00 35.17 2.52
1970 1983 3.251004 CACTTCCACCAAGCTACAAGAAC 59.749 47.826 0.00 0.00 35.17 3.01
1971 1984 3.136626 ACTTCCACCAAGCTACAAGAACT 59.863 43.478 0.00 0.00 35.17 3.01
1972 1985 3.857157 TCCACCAAGCTACAAGAACTT 57.143 42.857 0.00 0.00 0.00 2.66
1973 1986 3.740115 TCCACCAAGCTACAAGAACTTC 58.260 45.455 0.00 0.00 0.00 3.01
1974 1987 2.480419 CCACCAAGCTACAAGAACTTCG 59.520 50.000 0.00 0.00 0.00 3.79
1975 1988 3.131396 CACCAAGCTACAAGAACTTCGT 58.869 45.455 0.00 0.00 0.00 3.85
1976 1989 4.304110 CACCAAGCTACAAGAACTTCGTA 58.696 43.478 0.00 0.00 0.00 3.43
1977 1990 4.748102 CACCAAGCTACAAGAACTTCGTAA 59.252 41.667 0.00 0.00 0.00 3.18
1978 1991 5.408604 CACCAAGCTACAAGAACTTCGTAAT 59.591 40.000 0.00 0.00 0.00 1.89
1979 1992 5.408604 ACCAAGCTACAAGAACTTCGTAATG 59.591 40.000 0.00 0.00 0.00 1.90
1980 1993 5.637810 CCAAGCTACAAGAACTTCGTAATGA 59.362 40.000 0.00 0.00 0.00 2.57
1981 1994 6.147164 CCAAGCTACAAGAACTTCGTAATGAA 59.853 38.462 0.00 0.00 34.74 2.57
1982 1995 6.707599 AGCTACAAGAACTTCGTAATGAAC 57.292 37.500 0.00 0.00 31.87 3.18
1983 1996 6.456501 AGCTACAAGAACTTCGTAATGAACT 58.543 36.000 0.00 0.00 31.87 3.01
1984 1997 7.600065 AGCTACAAGAACTTCGTAATGAACTA 58.400 34.615 0.00 0.00 31.87 2.24
1985 1998 8.251721 AGCTACAAGAACTTCGTAATGAACTAT 58.748 33.333 0.00 0.00 31.87 2.12
1986 1999 9.512435 GCTACAAGAACTTCGTAATGAACTATA 57.488 33.333 0.00 0.00 31.87 1.31
1989 2002 9.701098 ACAAGAACTTCGTAATGAACTATAACA 57.299 29.630 0.00 0.00 31.87 2.41
1992 2005 8.818057 AGAACTTCGTAATGAACTATAACATGC 58.182 33.333 0.00 0.00 31.87 4.06
1993 2006 8.487313 AACTTCGTAATGAACTATAACATGCA 57.513 30.769 0.00 0.00 31.87 3.96
1994 2007 8.487313 ACTTCGTAATGAACTATAACATGCAA 57.513 30.769 0.00 0.00 31.87 4.08
1995 2008 8.604035 ACTTCGTAATGAACTATAACATGCAAG 58.396 33.333 0.00 0.00 31.87 4.01
1996 2009 7.477144 TCGTAATGAACTATAACATGCAAGG 57.523 36.000 0.00 0.00 0.00 3.61
1997 2010 6.481976 TCGTAATGAACTATAACATGCAAGGG 59.518 38.462 0.00 0.00 0.00 3.95
1998 2011 6.481976 CGTAATGAACTATAACATGCAAGGGA 59.518 38.462 0.00 0.00 0.00 4.20
1999 2012 7.173218 CGTAATGAACTATAACATGCAAGGGAT 59.827 37.037 0.00 0.00 0.00 3.85
2000 2013 6.889301 ATGAACTATAACATGCAAGGGATG 57.111 37.500 0.00 0.00 0.00 3.51
2001 2014 5.132502 TGAACTATAACATGCAAGGGATGG 58.867 41.667 0.00 0.00 0.00 3.51
2002 2015 5.104151 TGAACTATAACATGCAAGGGATGGA 60.104 40.000 0.00 0.00 0.00 3.41
2003 2016 4.978099 ACTATAACATGCAAGGGATGGAG 58.022 43.478 0.00 0.00 30.55 3.86
2004 2017 4.660303 ACTATAACATGCAAGGGATGGAGA 59.340 41.667 0.00 0.00 30.55 3.71
2005 2018 2.905415 AACATGCAAGGGATGGAGAA 57.095 45.000 0.00 0.00 30.55 2.87
2006 2019 2.905415 ACATGCAAGGGATGGAGAAA 57.095 45.000 0.00 0.00 30.55 2.52
2007 2020 3.173953 ACATGCAAGGGATGGAGAAAA 57.826 42.857 0.00 0.00 30.55 2.29
2008 2021 3.716431 ACATGCAAGGGATGGAGAAAAT 58.284 40.909 0.00 0.00 30.55 1.82
2009 2022 3.449737 ACATGCAAGGGATGGAGAAAATG 59.550 43.478 0.00 0.00 30.55 2.32
2010 2023 3.454719 TGCAAGGGATGGAGAAAATGA 57.545 42.857 0.00 0.00 0.00 2.57
2011 2024 3.091545 TGCAAGGGATGGAGAAAATGAC 58.908 45.455 0.00 0.00 0.00 3.06
2012 2025 2.428530 GCAAGGGATGGAGAAAATGACC 59.571 50.000 0.00 0.00 0.00 4.02
2013 2026 3.026694 CAAGGGATGGAGAAAATGACCC 58.973 50.000 0.00 0.00 36.47 4.46
2014 2027 1.570979 AGGGATGGAGAAAATGACCCC 59.429 52.381 0.00 0.00 36.84 4.95
2015 2028 1.411644 GGGATGGAGAAAATGACCCCC 60.412 57.143 0.00 0.00 0.00 5.40
2016 2029 1.680338 GATGGAGAAAATGACCCCCG 58.320 55.000 0.00 0.00 0.00 5.73
2017 2030 1.211949 GATGGAGAAAATGACCCCCGA 59.788 52.381 0.00 0.00 0.00 5.14
2018 2031 0.618458 TGGAGAAAATGACCCCCGAG 59.382 55.000 0.00 0.00 0.00 4.63
2019 2032 0.748367 GGAGAAAATGACCCCCGAGC 60.748 60.000 0.00 0.00 0.00 5.03
2020 2033 0.253327 GAGAAAATGACCCCCGAGCT 59.747 55.000 0.00 0.00 0.00 4.09
2021 2034 1.485066 GAGAAAATGACCCCCGAGCTA 59.515 52.381 0.00 0.00 0.00 3.32
2022 2035 2.104963 GAGAAAATGACCCCCGAGCTAT 59.895 50.000 0.00 0.00 0.00 2.97
2023 2036 2.509964 AGAAAATGACCCCCGAGCTATT 59.490 45.455 0.00 0.00 0.00 1.73
2024 2037 2.640316 AAATGACCCCCGAGCTATTC 57.360 50.000 0.00 0.00 0.00 1.75
2032 2045 4.235065 CGAGCTATTCGCGATGCT 57.765 55.556 24.60 24.60 43.22 3.79
2033 2046 2.510948 CGAGCTATTCGCGATGCTT 58.489 52.632 24.94 13.72 43.22 3.91
2034 2047 1.686464 CGAGCTATTCGCGATGCTTA 58.314 50.000 24.94 6.57 43.22 3.09
2035 2048 2.051423 CGAGCTATTCGCGATGCTTAA 58.949 47.619 24.94 5.86 43.22 1.85
2036 2049 2.089734 CGAGCTATTCGCGATGCTTAAG 59.910 50.000 24.94 17.79 43.22 1.85
2037 2050 2.408050 AGCTATTCGCGATGCTTAAGG 58.592 47.619 20.74 4.57 45.59 2.69
2038 2051 1.136224 GCTATTCGCGATGCTTAAGGC 60.136 52.381 10.88 2.66 42.22 4.35
2039 2052 1.461127 CTATTCGCGATGCTTAAGGCC 59.539 52.381 10.88 0.00 40.92 5.19
2040 2053 1.498865 ATTCGCGATGCTTAAGGCCG 61.499 55.000 10.88 0.00 40.92 6.13
2041 2054 4.299316 CGCGATGCTTAAGGCCGC 62.299 66.667 0.00 7.37 44.14 6.53
2042 2055 3.202001 GCGATGCTTAAGGCCGCA 61.202 61.111 5.46 5.46 45.86 5.69
2043 2056 3.017323 CGATGCTTAAGGCCGCAG 58.983 61.111 9.00 2.08 39.82 5.18
2044 2057 1.521457 CGATGCTTAAGGCCGCAGA 60.521 57.895 9.00 0.00 39.82 4.26
2045 2058 1.089481 CGATGCTTAAGGCCGCAGAA 61.089 55.000 9.00 0.00 39.82 3.02
2046 2059 0.378610 GATGCTTAAGGCCGCAGAAC 59.621 55.000 9.00 0.44 39.82 3.01
2047 2060 0.035056 ATGCTTAAGGCCGCAGAACT 60.035 50.000 9.00 0.00 39.82 3.01
2048 2061 0.611200 TGCTTAAGGCCGCAGAACTA 59.389 50.000 4.29 0.00 40.92 2.24
2049 2062 1.291132 GCTTAAGGCCGCAGAACTAG 58.709 55.000 4.29 0.00 34.27 2.57
2050 2063 1.134788 GCTTAAGGCCGCAGAACTAGA 60.135 52.381 4.29 0.00 34.27 2.43
2051 2064 2.677037 GCTTAAGGCCGCAGAACTAGAA 60.677 50.000 4.29 0.00 34.27 2.10
2052 2065 3.596214 CTTAAGGCCGCAGAACTAGAAA 58.404 45.455 0.00 0.00 0.00 2.52
2053 2066 2.789409 AAGGCCGCAGAACTAGAAAT 57.211 45.000 0.00 0.00 0.00 2.17
2054 2067 2.029838 AGGCCGCAGAACTAGAAATG 57.970 50.000 0.00 0.00 0.00 2.32
2055 2068 1.279271 AGGCCGCAGAACTAGAAATGT 59.721 47.619 0.00 0.00 0.00 2.71
2056 2069 1.398390 GGCCGCAGAACTAGAAATGTG 59.602 52.381 0.00 0.00 0.00 3.21
2057 2070 1.398390 GCCGCAGAACTAGAAATGTGG 59.602 52.381 16.11 16.11 44.40 4.17
2058 2071 2.935238 GCCGCAGAACTAGAAATGTGGA 60.935 50.000 21.41 0.00 44.35 4.02
2059 2072 3.535561 CCGCAGAACTAGAAATGTGGAT 58.464 45.455 15.65 0.00 44.35 3.41
2060 2073 3.310774 CCGCAGAACTAGAAATGTGGATG 59.689 47.826 15.65 0.00 44.35 3.51
2061 2074 3.310774 CGCAGAACTAGAAATGTGGATGG 59.689 47.826 0.00 0.00 0.00 3.51
2062 2075 4.517285 GCAGAACTAGAAATGTGGATGGA 58.483 43.478 0.00 0.00 0.00 3.41
2063 2076 4.574013 GCAGAACTAGAAATGTGGATGGAG 59.426 45.833 0.00 0.00 0.00 3.86
2064 2077 4.574013 CAGAACTAGAAATGTGGATGGAGC 59.426 45.833 0.00 0.00 0.00 4.70
2065 2078 4.225942 AGAACTAGAAATGTGGATGGAGCA 59.774 41.667 0.00 0.00 0.00 4.26
2066 2079 4.785346 ACTAGAAATGTGGATGGAGCAT 57.215 40.909 0.00 0.00 0.00 3.79
2067 2080 4.712476 ACTAGAAATGTGGATGGAGCATC 58.288 43.478 0.00 0.00 39.87 3.91
2068 2081 3.657398 AGAAATGTGGATGGAGCATCA 57.343 42.857 0.00 0.00 42.13 3.07
2069 2082 3.972133 AGAAATGTGGATGGAGCATCAA 58.028 40.909 0.00 0.00 42.13 2.57
2070 2083 3.952323 AGAAATGTGGATGGAGCATCAAG 59.048 43.478 0.00 0.00 42.13 3.02
2071 2084 3.377253 AATGTGGATGGAGCATCAAGT 57.623 42.857 0.00 0.00 42.13 3.16
2072 2085 2.118313 TGTGGATGGAGCATCAAGTG 57.882 50.000 0.00 0.00 42.13 3.16
2073 2086 1.352017 TGTGGATGGAGCATCAAGTGT 59.648 47.619 0.00 0.00 42.13 3.55
2074 2087 2.224843 TGTGGATGGAGCATCAAGTGTT 60.225 45.455 0.00 0.00 42.13 3.32
2075 2088 2.163010 GTGGATGGAGCATCAAGTGTTG 59.837 50.000 0.00 0.00 42.13 3.33
2076 2089 2.040145 TGGATGGAGCATCAAGTGTTGA 59.960 45.455 0.00 0.00 42.13 3.18
2091 2104 8.106247 TCAAGTGTTGATGGTTAATAAAGACC 57.894 34.615 0.00 0.00 34.08 3.85
2103 2116 9.280174 TGGTTAATAAAGACCAGTAGTTTCAAG 57.720 33.333 0.00 0.00 40.85 3.02
2104 2117 9.498176 GGTTAATAAAGACCAGTAGTTTCAAGA 57.502 33.333 0.00 0.00 35.95 3.02
2107 2120 8.622948 AATAAAGACCAGTAGTTTCAAGAAGG 57.377 34.615 0.00 0.00 0.00 3.46
2108 2121 4.625607 AGACCAGTAGTTTCAAGAAGGG 57.374 45.455 0.00 0.00 0.00 3.95
2109 2122 3.075148 GACCAGTAGTTTCAAGAAGGGC 58.925 50.000 0.00 0.00 0.00 5.19
2110 2123 2.441750 ACCAGTAGTTTCAAGAAGGGCA 59.558 45.455 0.00 0.00 0.00 5.36
2111 2124 3.117663 ACCAGTAGTTTCAAGAAGGGCAA 60.118 43.478 0.00 0.00 0.00 4.52
2112 2125 3.503748 CCAGTAGTTTCAAGAAGGGCAAG 59.496 47.826 0.00 0.00 0.00 4.01
2113 2126 4.389374 CAGTAGTTTCAAGAAGGGCAAGA 58.611 43.478 0.00 0.00 0.00 3.02
2114 2127 4.821805 CAGTAGTTTCAAGAAGGGCAAGAA 59.178 41.667 0.00 0.00 0.00 2.52
2115 2128 5.049129 CAGTAGTTTCAAGAAGGGCAAGAAG 60.049 44.000 0.00 0.00 0.00 2.85
2116 2129 3.225940 AGTTTCAAGAAGGGCAAGAAGG 58.774 45.455 0.00 0.00 0.00 3.46
2117 2130 2.292828 TTCAAGAAGGGCAAGAAGGG 57.707 50.000 0.00 0.00 0.00 3.95
2118 2131 1.444933 TCAAGAAGGGCAAGAAGGGA 58.555 50.000 0.00 0.00 0.00 4.20
2119 2132 1.780309 TCAAGAAGGGCAAGAAGGGAA 59.220 47.619 0.00 0.00 0.00 3.97
2120 2133 2.176798 TCAAGAAGGGCAAGAAGGGAAA 59.823 45.455 0.00 0.00 0.00 3.13
2121 2134 2.294449 AGAAGGGCAAGAAGGGAAAC 57.706 50.000 0.00 0.00 0.00 2.78
2122 2135 1.783365 AGAAGGGCAAGAAGGGAAACT 59.217 47.619 0.00 0.00 0.00 2.66
2123 2136 2.177888 AGAAGGGCAAGAAGGGAAACTT 59.822 45.455 0.00 0.00 43.65 2.66
2134 2147 3.243359 AGGGAAACTTCAAGAATGGCA 57.757 42.857 0.00 0.00 0.00 4.92
2135 2148 3.575805 AGGGAAACTTCAAGAATGGCAA 58.424 40.909 0.00 0.00 0.00 4.52
2136 2149 3.575687 AGGGAAACTTCAAGAATGGCAAG 59.424 43.478 0.00 0.00 0.00 4.01
2137 2150 3.320626 GGAAACTTCAAGAATGGCAAGC 58.679 45.455 0.00 0.00 0.00 4.01
2138 2151 3.320626 GAAACTTCAAGAATGGCAAGCC 58.679 45.455 3.61 3.61 0.00 4.35
2162 2175 2.436115 CGCCCTCGGGAAGAAACC 60.436 66.667 6.08 0.00 37.50 3.27
2163 2176 2.045242 GCCCTCGGGAAGAAACCC 60.045 66.667 6.08 0.00 45.92 4.11
2167 2180 0.322546 CCTCGGGAAGAAACCCAAGG 60.323 60.000 0.00 0.00 46.29 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.394565 CCCACTATGTAGCAGCCTCC 59.605 60.000 0.00 0.00 0.00 4.30
1 2 1.123928 ACCCACTATGTAGCAGCCTC 58.876 55.000 0.00 0.00 0.00 4.70
2 3 1.486726 GAACCCACTATGTAGCAGCCT 59.513 52.381 0.00 0.00 0.00 4.58
3 4 1.486726 AGAACCCACTATGTAGCAGCC 59.513 52.381 0.00 0.00 0.00 4.85
4 5 2.168521 TGAGAACCCACTATGTAGCAGC 59.831 50.000 0.00 0.00 0.00 5.25
5 6 4.502259 GGATGAGAACCCACTATGTAGCAG 60.502 50.000 0.00 0.00 0.00 4.24
41 42 5.459107 GTCAACGTATGCTCCTATTACACTG 59.541 44.000 0.00 0.00 0.00 3.66
58 59 2.158667 AGGGTGATCCTTTTGTCAACGT 60.159 45.455 0.00 0.00 45.47 3.99
135 136 3.133141 AGGAGCAAGTCAGAAAGGTTC 57.867 47.619 0.00 0.00 0.00 3.62
157 158 1.056660 TCCTTTCGACCTTGCTTCCT 58.943 50.000 0.00 0.00 0.00 3.36
162 163 3.915437 TTTCAATCCTTTCGACCTTGC 57.085 42.857 0.00 0.00 0.00 4.01
205 206 7.769044 CCTTAACTTTTCGAGGAATCCTTCATA 59.231 37.037 2.09 0.00 31.76 2.15
271 272 5.901552 TCGCATATGTACAAGACTGAATCA 58.098 37.500 0.00 0.00 0.00 2.57
283 285 5.779922 TGATTACCTTCCTCGCATATGTAC 58.220 41.667 4.29 0.00 0.00 2.90
351 353 1.539827 TGAGACTTTCATCTCGCACGA 59.460 47.619 0.00 0.00 46.98 4.35
383 385 3.092301 TCCTCGCTTCTTTCTCTCATGA 58.908 45.455 0.00 0.00 0.00 3.07
428 430 2.435372 AAAGCAACAACTGGAGTGGA 57.565 45.000 0.00 0.00 0.00 4.02
439 441 6.255215 CGAAGTAACAGAAAGAAAAGCAACA 58.745 36.000 0.00 0.00 0.00 3.33
527 529 7.180663 AGGATTTCCAGAAGAAGATGACATTT 58.819 34.615 0.00 0.00 38.89 2.32
532 534 5.664908 AGCTAGGATTTCCAGAAGAAGATGA 59.335 40.000 0.00 0.00 38.89 2.92
582 584 5.070001 TGCTTGTTTGAGTAATAGCAAGGT 58.930 37.500 0.00 0.00 35.00 3.50
628 630 6.204852 ACATATCTGATTTGCCCTATGGAA 57.795 37.500 7.84 0.00 0.00 3.53
654 656 7.282585 TGAGTCTCCAACAATTATTCCCATAG 58.717 38.462 0.00 0.00 0.00 2.23
658 660 6.834168 TTTGAGTCTCCAACAATTATTCCC 57.166 37.500 0.00 0.00 0.00 3.97
737 739 9.492973 AAATAATACAATGCAAGCAAAAGTTCT 57.507 25.926 0.00 0.00 0.00 3.01
837 839 5.544562 AGGGATAAGAGACATAGGGCTAAAC 59.455 44.000 0.00 0.00 0.00 2.01
985 997 9.878667 TCGTCCAGTCATTAATAACTTGATTAA 57.121 29.630 0.00 0.00 36.10 1.40
1026 1038 9.209175 GATCTTCTATAATTTCGCACATAAGGT 57.791 33.333 0.00 0.00 0.00 3.50
1086 1098 5.684550 ATGCTATCACACATACAAGCATG 57.315 39.130 6.81 0.00 46.03 4.06
1090 1102 8.352942 TGTAGTAGATGCTATCACACATACAAG 58.647 37.037 0.00 0.00 0.00 3.16
1091 1103 8.135529 GTGTAGTAGATGCTATCACACATACAA 58.864 37.037 12.64 0.00 0.00 2.41
1115 1127 5.439721 TGAGGTTCATTGATATTCCTGGTG 58.560 41.667 0.00 0.00 0.00 4.17
1136 1148 3.423749 TCCTGAGCAATTGCAAGAATGA 58.576 40.909 30.89 16.73 45.16 2.57
1173 1186 7.792364 TCTTGAACTAAGAAATGGACCTAGA 57.208 36.000 0.00 0.00 42.31 2.43
1291 1304 9.911788 ATGAACTTATAACCTGATGATTGAGTT 57.088 29.630 0.00 0.00 0.00 3.01
1296 1309 9.872684 ATGGAATGAACTTATAACCTGATGATT 57.127 29.630 0.00 0.00 0.00 2.57
1305 1318 7.496591 TGGTTCGGTATGGAATGAACTTATAAC 59.503 37.037 4.23 0.00 40.34 1.89
1335 1348 7.980662 CCCATTCTCATAATAAAAATGTGCACA 59.019 33.333 24.08 24.08 0.00 4.57
1358 1371 2.204463 TCCATAGGCTTGAATGACCCA 58.796 47.619 0.00 0.00 0.00 4.51
1450 1463 8.484214 AGATAGATATGTCAAAAGCAGGTCTA 57.516 34.615 0.00 0.00 0.00 2.59
1475 1488 9.073475 GTGCATATGGTACCCAAATTAGAATAA 57.927 33.333 10.07 0.00 36.95 1.40
1594 1607 8.404765 TCAAATAGCTTCGATTTGCATTATTCA 58.595 29.630 13.39 0.00 41.86 2.57
1596 1609 9.188588 CATCAAATAGCTTCGATTTGCATTATT 57.811 29.630 13.39 0.93 41.86 1.40
1644 1657 5.299531 AGTCTTGGAGTATTTCGATCGATCA 59.700 40.000 24.40 9.38 0.00 2.92
1796 1809 2.654802 GAGGACTCGAACCTCCACA 58.345 57.895 20.92 0.00 45.64 4.17
1832 1845 2.622064 AACGGAGGTATGAGCATTCC 57.378 50.000 0.00 0.00 0.00 3.01
1843 1856 1.889530 GCCTGCTCACTAACGGAGGT 61.890 60.000 0.00 0.00 40.47 3.85
1844 1857 1.153549 GCCTGCTCACTAACGGAGG 60.154 63.158 0.00 0.00 41.20 4.30
1845 1858 0.737715 GTGCCTGCTCACTAACGGAG 60.738 60.000 0.00 0.00 34.29 4.63
1846 1859 1.185618 AGTGCCTGCTCACTAACGGA 61.186 55.000 5.30 0.00 44.77 4.69
1847 1860 0.737715 GAGTGCCTGCTCACTAACGG 60.738 60.000 6.79 0.00 46.40 4.44
1848 1861 0.038251 TGAGTGCCTGCTCACTAACG 60.038 55.000 6.79 0.00 46.40 3.18
1849 1862 2.072298 CTTGAGTGCCTGCTCACTAAC 58.928 52.381 6.79 0.00 46.40 2.34
1850 1863 1.970640 TCTTGAGTGCCTGCTCACTAA 59.029 47.619 6.79 0.00 46.40 2.24
1851 1864 1.632589 TCTTGAGTGCCTGCTCACTA 58.367 50.000 6.79 0.00 46.40 2.74
1853 1866 1.085091 CATCTTGAGTGCCTGCTCAC 58.915 55.000 2.77 0.00 44.23 3.51
1854 1867 0.689055 ACATCTTGAGTGCCTGCTCA 59.311 50.000 0.00 0.00 43.03 4.26
1855 1868 1.066286 AGACATCTTGAGTGCCTGCTC 60.066 52.381 0.00 0.00 36.12 4.26
1856 1869 0.982704 AGACATCTTGAGTGCCTGCT 59.017 50.000 0.00 0.00 0.00 4.24
1857 1870 1.085091 CAGACATCTTGAGTGCCTGC 58.915 55.000 0.00 0.00 0.00 4.85
1858 1871 1.678123 CCCAGACATCTTGAGTGCCTG 60.678 57.143 0.00 0.00 0.00 4.85
1859 1872 0.617413 CCCAGACATCTTGAGTGCCT 59.383 55.000 0.00 0.00 0.00 4.75
1860 1873 0.326264 ACCCAGACATCTTGAGTGCC 59.674 55.000 0.00 0.00 0.00 5.01
1861 1874 2.234908 AGTACCCAGACATCTTGAGTGC 59.765 50.000 0.00 0.00 0.00 4.40
1862 1875 3.854666 CAGTACCCAGACATCTTGAGTG 58.145 50.000 0.00 0.00 0.00 3.51
1863 1876 2.234908 GCAGTACCCAGACATCTTGAGT 59.765 50.000 0.00 0.00 0.00 3.41
1864 1877 2.234661 TGCAGTACCCAGACATCTTGAG 59.765 50.000 0.00 0.00 0.00 3.02
1865 1878 2.256306 TGCAGTACCCAGACATCTTGA 58.744 47.619 0.00 0.00 0.00 3.02
1866 1879 2.768253 TGCAGTACCCAGACATCTTG 57.232 50.000 0.00 0.00 0.00 3.02
1867 1880 3.264193 TGATTGCAGTACCCAGACATCTT 59.736 43.478 0.00 0.00 0.00 2.40
1868 1881 2.840038 TGATTGCAGTACCCAGACATCT 59.160 45.455 0.00 0.00 0.00 2.90
1869 1882 3.266510 TGATTGCAGTACCCAGACATC 57.733 47.619 0.00 0.00 0.00 3.06
1870 1883 3.939740 ATGATTGCAGTACCCAGACAT 57.060 42.857 0.00 0.00 0.00 3.06
1871 1884 3.008923 TCAATGATTGCAGTACCCAGACA 59.991 43.478 0.00 0.00 0.00 3.41
1872 1885 3.609853 TCAATGATTGCAGTACCCAGAC 58.390 45.455 0.00 0.00 0.00 3.51
1873 1886 3.998913 TCAATGATTGCAGTACCCAGA 57.001 42.857 0.00 0.00 0.00 3.86
1874 1887 4.641541 TGATTCAATGATTGCAGTACCCAG 59.358 41.667 0.00 0.00 0.00 4.45
1875 1888 4.598022 TGATTCAATGATTGCAGTACCCA 58.402 39.130 0.00 0.00 0.00 4.51
1876 1889 4.641989 ACTGATTCAATGATTGCAGTACCC 59.358 41.667 12.99 0.00 35.09 3.69
1877 1890 5.824904 ACTGATTCAATGATTGCAGTACC 57.175 39.130 12.99 0.00 35.09 3.34
1878 1891 7.280876 TCCTAACTGATTCAATGATTGCAGTAC 59.719 37.037 14.38 0.00 35.73 2.73
1879 1892 7.337938 TCCTAACTGATTCAATGATTGCAGTA 58.662 34.615 14.38 0.89 35.73 2.74
1880 1893 6.182627 TCCTAACTGATTCAATGATTGCAGT 58.817 36.000 9.99 9.99 38.14 4.40
1881 1894 6.318144 ACTCCTAACTGATTCAATGATTGCAG 59.682 38.462 0.00 5.14 0.00 4.41
1882 1895 6.182627 ACTCCTAACTGATTCAATGATTGCA 58.817 36.000 0.00 0.00 0.00 4.08
1883 1896 6.690194 ACTCCTAACTGATTCAATGATTGC 57.310 37.500 0.00 0.00 0.00 3.56
1891 1904 9.658799 CTGAAAGATTAACTCCTAACTGATTCA 57.341 33.333 0.00 0.00 34.07 2.57
1892 1905 9.877178 TCTGAAAGATTAACTCCTAACTGATTC 57.123 33.333 0.00 0.00 38.67 2.52
1911 1924 6.035435 CGGTCAATCACTACTTCATCTGAAAG 59.965 42.308 0.00 0.00 33.07 2.62
1912 1925 5.869344 CGGTCAATCACTACTTCATCTGAAA 59.131 40.000 0.00 0.00 33.07 2.69
1913 1926 5.185056 TCGGTCAATCACTACTTCATCTGAA 59.815 40.000 0.00 0.00 0.00 3.02
1914 1927 4.705023 TCGGTCAATCACTACTTCATCTGA 59.295 41.667 0.00 0.00 0.00 3.27
1915 1928 4.998788 TCGGTCAATCACTACTTCATCTG 58.001 43.478 0.00 0.00 0.00 2.90
1916 1929 4.707448 ACTCGGTCAATCACTACTTCATCT 59.293 41.667 0.00 0.00 0.00 2.90
1917 1930 5.000012 ACTCGGTCAATCACTACTTCATC 58.000 43.478 0.00 0.00 0.00 2.92
1918 1931 5.186021 AGAACTCGGTCAATCACTACTTCAT 59.814 40.000 0.00 0.00 0.00 2.57
1919 1932 4.523173 AGAACTCGGTCAATCACTACTTCA 59.477 41.667 0.00 0.00 0.00 3.02
1920 1933 5.061920 AGAACTCGGTCAATCACTACTTC 57.938 43.478 0.00 0.00 0.00 3.01
1921 1934 4.082136 GGAGAACTCGGTCAATCACTACTT 60.082 45.833 0.00 0.00 0.00 2.24
1922 1935 3.444388 GGAGAACTCGGTCAATCACTACT 59.556 47.826 0.00 0.00 0.00 2.57
1923 1936 3.192844 TGGAGAACTCGGTCAATCACTAC 59.807 47.826 0.00 0.00 0.00 2.73
1924 1937 3.427573 TGGAGAACTCGGTCAATCACTA 58.572 45.455 0.00 0.00 0.00 2.74
1925 1938 2.232452 CTGGAGAACTCGGTCAATCACT 59.768 50.000 0.00 0.00 0.00 3.41
1926 1939 2.028930 ACTGGAGAACTCGGTCAATCAC 60.029 50.000 0.00 0.00 0.00 3.06
1927 1940 2.231478 GACTGGAGAACTCGGTCAATCA 59.769 50.000 15.66 0.57 35.06 2.57
1928 1941 2.231478 TGACTGGAGAACTCGGTCAATC 59.769 50.000 18.65 4.77 38.77 2.67
1929 1942 2.028930 GTGACTGGAGAACTCGGTCAAT 60.029 50.000 20.83 0.00 41.13 2.57
1930 1943 1.340248 GTGACTGGAGAACTCGGTCAA 59.660 52.381 20.83 10.12 41.13 3.18
1931 1944 0.959553 GTGACTGGAGAACTCGGTCA 59.040 55.000 17.74 17.74 39.10 4.02
1932 1945 1.249407 AGTGACTGGAGAACTCGGTC 58.751 55.000 14.52 14.52 35.31 4.79
1933 1946 1.614413 GAAGTGACTGGAGAACTCGGT 59.386 52.381 0.00 0.00 0.00 4.69
1934 1947 1.067495 GGAAGTGACTGGAGAACTCGG 60.067 57.143 0.00 0.00 0.00 4.63
1935 1948 1.613925 TGGAAGTGACTGGAGAACTCG 59.386 52.381 0.00 0.00 0.00 4.18
1936 1949 2.289133 GGTGGAAGTGACTGGAGAACTC 60.289 54.545 0.00 0.00 0.00 3.01
1937 1950 1.694696 GGTGGAAGTGACTGGAGAACT 59.305 52.381 0.00 0.00 0.00 3.01
1938 1951 1.416401 TGGTGGAAGTGACTGGAGAAC 59.584 52.381 0.00 0.00 0.00 3.01
1939 1952 1.801242 TGGTGGAAGTGACTGGAGAA 58.199 50.000 0.00 0.00 0.00 2.87
1940 1953 1.694150 CTTGGTGGAAGTGACTGGAGA 59.306 52.381 0.00 0.00 0.00 3.71
1941 1954 1.879796 GCTTGGTGGAAGTGACTGGAG 60.880 57.143 0.00 0.00 33.73 3.86
1942 1955 0.108585 GCTTGGTGGAAGTGACTGGA 59.891 55.000 0.00 0.00 33.73 3.86
1943 1956 0.109342 AGCTTGGTGGAAGTGACTGG 59.891 55.000 0.00 0.00 33.73 4.00
1944 1957 2.224281 TGTAGCTTGGTGGAAGTGACTG 60.224 50.000 0.00 0.00 33.73 3.51
1945 1958 2.047061 TGTAGCTTGGTGGAAGTGACT 58.953 47.619 0.00 0.00 33.73 3.41
1946 1959 2.543777 TGTAGCTTGGTGGAAGTGAC 57.456 50.000 0.00 0.00 33.73 3.67
1947 1960 2.703536 TCTTGTAGCTTGGTGGAAGTGA 59.296 45.455 0.00 0.00 33.73 3.41
1948 1961 3.126001 TCTTGTAGCTTGGTGGAAGTG 57.874 47.619 0.00 0.00 33.73 3.16
1949 1962 3.136626 AGTTCTTGTAGCTTGGTGGAAGT 59.863 43.478 0.00 0.00 33.73 3.01
1950 1963 3.744660 AGTTCTTGTAGCTTGGTGGAAG 58.255 45.455 0.00 0.00 34.41 3.46
1951 1964 3.857157 AGTTCTTGTAGCTTGGTGGAA 57.143 42.857 0.00 0.00 0.00 3.53
1952 1965 3.740115 GAAGTTCTTGTAGCTTGGTGGA 58.260 45.455 0.00 0.00 0.00 4.02
1953 1966 2.480419 CGAAGTTCTTGTAGCTTGGTGG 59.520 50.000 0.00 0.00 0.00 4.61
1954 1967 3.131396 ACGAAGTTCTTGTAGCTTGGTG 58.869 45.455 0.00 0.00 37.78 4.17
1955 1968 3.470645 ACGAAGTTCTTGTAGCTTGGT 57.529 42.857 0.00 0.00 37.78 3.67
1956 1969 5.637810 TCATTACGAAGTTCTTGTAGCTTGG 59.362 40.000 0.00 0.00 37.78 3.61
1957 1970 6.706055 TCATTACGAAGTTCTTGTAGCTTG 57.294 37.500 0.00 0.00 37.78 4.01
1958 1971 6.929606 AGTTCATTACGAAGTTCTTGTAGCTT 59.070 34.615 0.00 0.00 37.78 3.74
1959 1972 6.456501 AGTTCATTACGAAGTTCTTGTAGCT 58.543 36.000 0.56 0.00 37.78 3.32
1960 1973 6.707599 AGTTCATTACGAAGTTCTTGTAGC 57.292 37.500 0.56 0.00 37.78 3.58
1963 1976 9.701098 TGTTATAGTTCATTACGAAGTTCTTGT 57.299 29.630 0.56 0.00 37.78 3.16
1966 1979 8.818057 GCATGTTATAGTTCATTACGAAGTTCT 58.182 33.333 0.56 0.00 37.78 3.01
1967 1980 8.600625 TGCATGTTATAGTTCATTACGAAGTTC 58.399 33.333 0.00 0.00 37.78 3.01
1968 1981 8.487313 TGCATGTTATAGTTCATTACGAAGTT 57.513 30.769 0.00 0.00 37.78 2.66
1970 1983 8.064222 CCTTGCATGTTATAGTTCATTACGAAG 58.936 37.037 0.00 0.00 33.09 3.79
1971 1984 7.011950 CCCTTGCATGTTATAGTTCATTACGAA 59.988 37.037 0.00 0.00 0.00 3.85
1972 1985 6.481976 CCCTTGCATGTTATAGTTCATTACGA 59.518 38.462 0.00 0.00 0.00 3.43
1973 1986 6.481976 TCCCTTGCATGTTATAGTTCATTACG 59.518 38.462 0.00 0.00 0.00 3.18
1974 1987 7.801716 TCCCTTGCATGTTATAGTTCATTAC 57.198 36.000 0.00 0.00 0.00 1.89
1975 1988 7.448161 CCATCCCTTGCATGTTATAGTTCATTA 59.552 37.037 0.00 0.00 0.00 1.90
1976 1989 6.266103 CCATCCCTTGCATGTTATAGTTCATT 59.734 38.462 0.00 0.00 0.00 2.57
1977 1990 5.771666 CCATCCCTTGCATGTTATAGTTCAT 59.228 40.000 0.00 0.00 0.00 2.57
1978 1991 5.104151 TCCATCCCTTGCATGTTATAGTTCA 60.104 40.000 0.00 0.00 0.00 3.18
1979 1992 5.376625 TCCATCCCTTGCATGTTATAGTTC 58.623 41.667 0.00 0.00 0.00 3.01
1980 1993 5.132648 TCTCCATCCCTTGCATGTTATAGTT 59.867 40.000 0.00 0.00 0.00 2.24
1981 1994 4.660303 TCTCCATCCCTTGCATGTTATAGT 59.340 41.667 0.00 0.00 0.00 2.12
1982 1995 5.233083 TCTCCATCCCTTGCATGTTATAG 57.767 43.478 0.00 0.00 0.00 1.31
1983 1996 5.645056 TTCTCCATCCCTTGCATGTTATA 57.355 39.130 0.00 0.00 0.00 0.98
1984 1997 4.524802 TTCTCCATCCCTTGCATGTTAT 57.475 40.909 0.00 0.00 0.00 1.89
1985 1998 4.314522 TTTCTCCATCCCTTGCATGTTA 57.685 40.909 0.00 0.00 0.00 2.41
1986 1999 2.905415 TTCTCCATCCCTTGCATGTT 57.095 45.000 0.00 0.00 0.00 2.71
1987 2000 2.905415 TTTCTCCATCCCTTGCATGT 57.095 45.000 0.00 0.00 0.00 3.21
1988 2001 3.702548 TCATTTTCTCCATCCCTTGCATG 59.297 43.478 0.00 0.00 0.00 4.06
1989 2002 3.703052 GTCATTTTCTCCATCCCTTGCAT 59.297 43.478 0.00 0.00 0.00 3.96
1990 2003 3.091545 GTCATTTTCTCCATCCCTTGCA 58.908 45.455 0.00 0.00 0.00 4.08
1991 2004 2.428530 GGTCATTTTCTCCATCCCTTGC 59.571 50.000 0.00 0.00 0.00 4.01
1992 2005 3.026694 GGGTCATTTTCTCCATCCCTTG 58.973 50.000 0.00 0.00 0.00 3.61
1993 2006 2.023984 GGGGTCATTTTCTCCATCCCTT 60.024 50.000 0.00 0.00 34.44 3.95
1994 2007 1.570979 GGGGTCATTTTCTCCATCCCT 59.429 52.381 0.00 0.00 34.44 4.20
1995 2008 1.411644 GGGGGTCATTTTCTCCATCCC 60.412 57.143 0.00 0.00 0.00 3.85
1996 2009 1.750682 CGGGGGTCATTTTCTCCATCC 60.751 57.143 0.00 0.00 0.00 3.51
1997 2010 1.211949 TCGGGGGTCATTTTCTCCATC 59.788 52.381 0.00 0.00 0.00 3.51
1998 2011 1.212935 CTCGGGGGTCATTTTCTCCAT 59.787 52.381 0.00 0.00 0.00 3.41
1999 2012 0.618458 CTCGGGGGTCATTTTCTCCA 59.382 55.000 0.00 0.00 0.00 3.86
2000 2013 0.748367 GCTCGGGGGTCATTTTCTCC 60.748 60.000 0.00 0.00 0.00 3.71
2001 2014 0.253327 AGCTCGGGGGTCATTTTCTC 59.747 55.000 0.00 0.00 0.00 2.87
2002 2015 1.580059 TAGCTCGGGGGTCATTTTCT 58.420 50.000 0.00 0.00 0.00 2.52
2003 2016 2.640316 ATAGCTCGGGGGTCATTTTC 57.360 50.000 0.00 0.00 0.00 2.29
2004 2017 2.745152 CGAATAGCTCGGGGGTCATTTT 60.745 50.000 0.00 0.00 44.20 1.82
2005 2018 1.202651 CGAATAGCTCGGGGGTCATTT 60.203 52.381 0.00 0.00 44.20 2.32
2006 2019 0.393077 CGAATAGCTCGGGGGTCATT 59.607 55.000 0.00 0.00 44.20 2.57
2007 2020 2.050269 CGAATAGCTCGGGGGTCAT 58.950 57.895 0.00 0.00 44.20 3.06
2008 2021 3.533720 CGAATAGCTCGGGGGTCA 58.466 61.111 0.00 0.00 44.20 4.02
2016 2029 2.410053 CCTTAAGCATCGCGAATAGCTC 59.590 50.000 26.74 8.91 45.59 4.09
2017 2030 2.408050 CCTTAAGCATCGCGAATAGCT 58.592 47.619 22.91 22.91 45.59 3.32
2018 2031 1.136224 GCCTTAAGCATCGCGAATAGC 60.136 52.381 15.24 18.08 42.97 2.97
2019 2032 1.461127 GGCCTTAAGCATCGCGAATAG 59.539 52.381 15.24 7.64 46.50 1.73
2020 2033 1.508632 GGCCTTAAGCATCGCGAATA 58.491 50.000 15.24 1.11 46.50 1.75
2021 2034 1.498865 CGGCCTTAAGCATCGCGAAT 61.499 55.000 15.24 2.22 46.50 3.34
2022 2035 2.171079 CGGCCTTAAGCATCGCGAA 61.171 57.895 15.24 0.00 46.50 4.70
2023 2036 2.584970 CGGCCTTAAGCATCGCGA 60.585 61.111 13.09 13.09 46.50 5.87
2024 2037 4.299316 GCGGCCTTAAGCATCGCG 62.299 66.667 15.58 0.00 46.50 5.87
2026 2039 1.089481 TTCTGCGGCCTTAAGCATCG 61.089 55.000 0.00 1.72 46.50 3.84
2027 2040 0.378610 GTTCTGCGGCCTTAAGCATC 59.621 55.000 0.00 0.00 46.50 3.91
2028 2041 0.035056 AGTTCTGCGGCCTTAAGCAT 60.035 50.000 0.00 0.00 46.50 3.79
2029 2042 0.611200 TAGTTCTGCGGCCTTAAGCA 59.389 50.000 0.00 1.21 46.50 3.91
2030 2043 1.134788 TCTAGTTCTGCGGCCTTAAGC 60.135 52.381 0.00 0.00 42.60 3.09
2031 2044 2.961526 TCTAGTTCTGCGGCCTTAAG 57.038 50.000 0.00 0.00 0.00 1.85
2032 2045 3.688694 TTTCTAGTTCTGCGGCCTTAA 57.311 42.857 0.00 0.00 0.00 1.85
2033 2046 3.055385 ACATTTCTAGTTCTGCGGCCTTA 60.055 43.478 0.00 0.00 0.00 2.69
2034 2047 2.290323 ACATTTCTAGTTCTGCGGCCTT 60.290 45.455 0.00 0.00 0.00 4.35
2035 2048 1.279271 ACATTTCTAGTTCTGCGGCCT 59.721 47.619 0.00 0.00 0.00 5.19
2036 2049 1.398390 CACATTTCTAGTTCTGCGGCC 59.602 52.381 0.00 0.00 0.00 6.13
2037 2050 1.398390 CCACATTTCTAGTTCTGCGGC 59.602 52.381 0.00 0.00 0.00 6.53
2038 2051 2.972625 TCCACATTTCTAGTTCTGCGG 58.027 47.619 0.00 0.00 0.00 5.69
2039 2052 3.310774 CCATCCACATTTCTAGTTCTGCG 59.689 47.826 0.00 0.00 0.00 5.18
2040 2053 4.517285 TCCATCCACATTTCTAGTTCTGC 58.483 43.478 0.00 0.00 0.00 4.26
2041 2054 4.574013 GCTCCATCCACATTTCTAGTTCTG 59.426 45.833 0.00 0.00 0.00 3.02
2042 2055 4.225942 TGCTCCATCCACATTTCTAGTTCT 59.774 41.667 0.00 0.00 0.00 3.01
2043 2056 4.517285 TGCTCCATCCACATTTCTAGTTC 58.483 43.478 0.00 0.00 0.00 3.01
2044 2057 4.574674 TGCTCCATCCACATTTCTAGTT 57.425 40.909 0.00 0.00 0.00 2.24
2045 2058 4.164796 TGATGCTCCATCCACATTTCTAGT 59.835 41.667 3.03 0.00 39.87 2.57
2046 2059 4.711399 TGATGCTCCATCCACATTTCTAG 58.289 43.478 3.03 0.00 39.87 2.43
2047 2060 4.776435 TGATGCTCCATCCACATTTCTA 57.224 40.909 3.03 0.00 39.87 2.10
2048 2061 3.657398 TGATGCTCCATCCACATTTCT 57.343 42.857 3.03 0.00 39.87 2.52
2049 2062 3.698040 ACTTGATGCTCCATCCACATTTC 59.302 43.478 3.03 0.00 39.87 2.17
2050 2063 3.446161 CACTTGATGCTCCATCCACATTT 59.554 43.478 3.03 0.00 39.87 2.32
2051 2064 3.021695 CACTTGATGCTCCATCCACATT 58.978 45.455 3.03 0.00 39.87 2.71
2052 2065 2.025605 ACACTTGATGCTCCATCCACAT 60.026 45.455 3.03 0.00 39.87 3.21
2053 2066 1.352017 ACACTTGATGCTCCATCCACA 59.648 47.619 3.03 0.00 39.87 4.17
2054 2067 2.119801 ACACTTGATGCTCCATCCAC 57.880 50.000 3.03 0.00 39.87 4.02
2055 2068 2.040145 TCAACACTTGATGCTCCATCCA 59.960 45.455 3.03 0.00 39.87 3.41
2056 2069 2.715046 TCAACACTTGATGCTCCATCC 58.285 47.619 3.03 0.00 39.87 3.51
2066 2079 7.721842 TGGTCTTTATTAACCATCAACACTTGA 59.278 33.333 0.00 0.00 40.60 3.02
2067 2080 7.881142 TGGTCTTTATTAACCATCAACACTTG 58.119 34.615 0.00 0.00 40.60 3.16
2068 2081 7.724061 ACTGGTCTTTATTAACCATCAACACTT 59.276 33.333 0.00 0.00 44.30 3.16
2069 2082 7.231467 ACTGGTCTTTATTAACCATCAACACT 58.769 34.615 0.00 0.00 44.30 3.55
2070 2083 7.448748 ACTGGTCTTTATTAACCATCAACAC 57.551 36.000 0.00 0.00 44.30 3.32
2071 2084 8.380099 ACTACTGGTCTTTATTAACCATCAACA 58.620 33.333 0.00 0.00 44.30 3.33
2072 2085 8.788325 ACTACTGGTCTTTATTAACCATCAAC 57.212 34.615 0.00 0.00 44.30 3.18
2073 2086 9.802039 AAACTACTGGTCTTTATTAACCATCAA 57.198 29.630 0.00 0.00 44.30 2.57
2074 2087 9.444600 GAAACTACTGGTCTTTATTAACCATCA 57.555 33.333 0.00 0.00 44.30 3.07
2075 2088 9.444600 TGAAACTACTGGTCTTTATTAACCATC 57.555 33.333 0.00 0.00 44.30 3.51
2076 2089 9.802039 TTGAAACTACTGGTCTTTATTAACCAT 57.198 29.630 0.00 0.00 44.30 3.55
2077 2090 9.280174 CTTGAAACTACTGGTCTTTATTAACCA 57.720 33.333 0.00 0.00 43.20 3.67
2078 2091 9.498176 TCTTGAAACTACTGGTCTTTATTAACC 57.502 33.333 0.00 0.00 36.03 2.85
2081 2094 9.720769 CCTTCTTGAAACTACTGGTCTTTATTA 57.279 33.333 0.00 0.00 0.00 0.98
2082 2095 7.665974 CCCTTCTTGAAACTACTGGTCTTTATT 59.334 37.037 0.00 0.00 0.00 1.40
2083 2096 7.168905 CCCTTCTTGAAACTACTGGTCTTTAT 58.831 38.462 0.00 0.00 0.00 1.40
2084 2097 6.531021 CCCTTCTTGAAACTACTGGTCTTTA 58.469 40.000 0.00 0.00 0.00 1.85
2085 2098 5.377478 CCCTTCTTGAAACTACTGGTCTTT 58.623 41.667 0.00 0.00 0.00 2.52
2086 2099 4.747009 GCCCTTCTTGAAACTACTGGTCTT 60.747 45.833 0.00 0.00 0.00 3.01
2087 2100 3.244596 GCCCTTCTTGAAACTACTGGTCT 60.245 47.826 0.00 0.00 0.00 3.85
2088 2101 3.075148 GCCCTTCTTGAAACTACTGGTC 58.925 50.000 0.00 0.00 0.00 4.02
2089 2102 2.441750 TGCCCTTCTTGAAACTACTGGT 59.558 45.455 0.00 0.00 0.00 4.00
2090 2103 3.140325 TGCCCTTCTTGAAACTACTGG 57.860 47.619 0.00 0.00 0.00 4.00
2091 2104 4.389374 TCTTGCCCTTCTTGAAACTACTG 58.611 43.478 0.00 0.00 0.00 2.74
2092 2105 4.706842 TCTTGCCCTTCTTGAAACTACT 57.293 40.909 0.00 0.00 0.00 2.57
2093 2106 4.216472 CCTTCTTGCCCTTCTTGAAACTAC 59.784 45.833 0.00 0.00 0.00 2.73
2094 2107 4.398319 CCTTCTTGCCCTTCTTGAAACTA 58.602 43.478 0.00 0.00 0.00 2.24
2095 2108 3.225940 CCTTCTTGCCCTTCTTGAAACT 58.774 45.455 0.00 0.00 0.00 2.66
2096 2109 2.297315 CCCTTCTTGCCCTTCTTGAAAC 59.703 50.000 0.00 0.00 0.00 2.78
2097 2110 2.176798 TCCCTTCTTGCCCTTCTTGAAA 59.823 45.455 0.00 0.00 0.00 2.69
2098 2111 1.780309 TCCCTTCTTGCCCTTCTTGAA 59.220 47.619 0.00 0.00 0.00 2.69
2099 2112 1.444933 TCCCTTCTTGCCCTTCTTGA 58.555 50.000 0.00 0.00 0.00 3.02
2100 2113 2.292828 TTCCCTTCTTGCCCTTCTTG 57.707 50.000 0.00 0.00 0.00 3.02
2101 2114 2.177888 AGTTTCCCTTCTTGCCCTTCTT 59.822 45.455 0.00 0.00 0.00 2.52
2102 2115 1.783365 AGTTTCCCTTCTTGCCCTTCT 59.217 47.619 0.00 0.00 0.00 2.85
2103 2116 2.294449 AGTTTCCCTTCTTGCCCTTC 57.706 50.000 0.00 0.00 0.00 3.46
2104 2117 2.598565 GAAGTTTCCCTTCTTGCCCTT 58.401 47.619 0.00 0.00 45.19 3.95
2105 2118 2.294449 GAAGTTTCCCTTCTTGCCCT 57.706 50.000 0.00 0.00 45.19 5.19
2113 2126 3.575805 TGCCATTCTTGAAGTTTCCCTT 58.424 40.909 0.00 0.00 35.59 3.95
2114 2127 3.243359 TGCCATTCTTGAAGTTTCCCT 57.757 42.857 0.00 0.00 0.00 4.20
2115 2128 3.862264 GCTTGCCATTCTTGAAGTTTCCC 60.862 47.826 0.00 0.00 0.00 3.97
2116 2129 3.320626 GCTTGCCATTCTTGAAGTTTCC 58.679 45.455 0.00 0.00 0.00 3.13
2117 2130 3.243839 TGGCTTGCCATTCTTGAAGTTTC 60.244 43.478 10.65 0.00 0.00 2.78
2118 2131 2.699846 TGGCTTGCCATTCTTGAAGTTT 59.300 40.909 10.65 0.00 0.00 2.66
2119 2132 2.298163 CTGGCTTGCCATTCTTGAAGTT 59.702 45.455 15.21 0.00 0.00 2.66
2120 2133 1.891150 CTGGCTTGCCATTCTTGAAGT 59.109 47.619 15.21 0.00 0.00 3.01
2121 2134 1.891150 ACTGGCTTGCCATTCTTGAAG 59.109 47.619 15.21 3.42 0.00 3.02
2122 2135 1.999648 ACTGGCTTGCCATTCTTGAA 58.000 45.000 15.21 0.00 0.00 2.69
2123 2136 1.614903 CAACTGGCTTGCCATTCTTGA 59.385 47.619 15.21 0.00 0.00 3.02
2124 2137 2.074547 CAACTGGCTTGCCATTCTTG 57.925 50.000 15.21 12.27 0.00 3.02
2145 2158 2.436115 GGTTTCTTCCCGAGGGCG 60.436 66.667 2.58 0.00 34.68 6.13
2146 2159 2.045242 GGGTTTCTTCCCGAGGGC 60.045 66.667 2.58 0.00 37.93 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.