Multiple sequence alignment - TraesCS1D01G135200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G135200 chr1D 100.000 9397 0 0 1 9397 176345081 176354477 0.000000e+00 17354.0
1 TraesCS1D01G135200 chr1D 94.059 202 12 0 9194 9395 176374471 176374672 3.300000e-79 307.0
2 TraesCS1D01G135200 chr1D 84.577 201 27 4 9194 9392 224854098 224853900 7.440000e-46 196.0
3 TraesCS1D01G135200 chr1D 84.000 200 30 2 9194 9392 224841240 224841042 3.460000e-44 191.0
4 TraesCS1D01G135200 chr1A 96.886 8960 213 28 1 8931 232066251 232075173 0.000000e+00 14940.0
5 TraesCS1D01G135200 chr1A 87.413 143 5 7 8926 9068 232078054 232078183 1.630000e-32 152.0
6 TraesCS1D01G135200 chr1B 97.284 8652 171 25 1 8638 242660164 242668765 0.000000e+00 14617.0
7 TraesCS1D01G135200 chr1B 84.804 204 11 8 8622 8818 242668781 242668971 4.480000e-43 187.0
8 TraesCS1D01G135200 chr5D 86.092 568 60 17 744 1300 417635445 417636004 2.260000e-165 593.0
9 TraesCS1D01G135200 chr5D 80.118 679 74 29 1299 1945 417636037 417636686 5.180000e-122 449.0
10 TraesCS1D01G135200 chr5D 87.903 248 26 3 1053 1296 45593016 45592769 1.190000e-73 289.0
11 TraesCS1D01G135200 chr5D 90.141 213 18 3 2856 3067 417636728 417636938 3.340000e-69 274.0
12 TraesCS1D01G135200 chr2D 85.563 568 63 15 744 1300 80973981 80974540 2.280000e-160 577.0
13 TraesCS1D01G135200 chr2D 79.734 676 74 34 1299 1945 80974573 80975214 1.870000e-116 431.0
14 TraesCS1D01G135200 chr2D 90.141 213 18 3 2856 3067 80975258 80975468 3.340000e-69 274.0
15 TraesCS1D01G135200 chr4D 81.210 314 47 8 1842 2149 446151081 446150774 9.430000e-60 243.0
16 TraesCS1D01G135200 chr4D 72.188 809 169 42 7539 8328 446144175 446143404 7.440000e-46 196.0
17 TraesCS1D01G135200 chr4D 82.500 120 10 6 985 1095 446152401 446152284 2.790000e-15 95.3
18 TraesCS1D01G135200 chr4D 85.714 70 10 0 5676 5745 446145448 446145379 3.640000e-09 75.0
19 TraesCS1D01G135200 chr4B 81.210 314 47 8 1842 2149 558058022 558057715 9.430000e-60 243.0
20 TraesCS1D01G135200 chr4B 72.391 891 176 48 7539 8397 558051048 558050196 1.590000e-52 219.0
21 TraesCS1D01G135200 chr4B 80.147 136 16 6 985 1111 558059328 558059195 3.610000e-14 91.6
22 TraesCS1D01G135200 chr4B 83.721 86 13 1 5676 5760 558052320 558052235 7.820000e-11 80.5
23 TraesCS1D01G135200 chr5A 84.500 200 29 2 9194 9392 463993384 463993582 7.440000e-46 196.0
24 TraesCS1D01G135200 chr5A 84.729 203 23 6 9194 9392 463997841 463998039 7.440000e-46 196.0
25 TraesCS1D01G135200 chr2B 84.500 200 29 2 9194 9392 324207078 324207276 7.440000e-46 196.0
26 TraesCS1D01G135200 chr7D 83.824 204 31 2 9190 9392 80084494 80084292 9.630000e-45 193.0
27 TraesCS1D01G135200 chr2A 83.824 204 31 2 9194 9396 718467838 718467636 9.630000e-45 193.0
28 TraesCS1D01G135200 chr3B 84.000 200 30 2 9194 9392 47580287 47580485 3.460000e-44 191.0
29 TraesCS1D01G135200 chr4A 71.429 385 88 15 5372 5745 21212209 21212582 2.170000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G135200 chr1D 176345081 176354477 9396 False 17354.000000 17354 100.000000 1 9397 1 chr1D.!!$F1 9396
1 TraesCS1D01G135200 chr1A 232066251 232078183 11932 False 7546.000000 14940 92.149500 1 9068 2 chr1A.!!$F1 9067
2 TraesCS1D01G135200 chr1B 242660164 242668971 8807 False 7402.000000 14617 91.044000 1 8818 2 chr1B.!!$F1 8817
3 TraesCS1D01G135200 chr5D 417635445 417636938 1493 False 438.666667 593 85.450333 744 3067 3 chr5D.!!$F1 2323
4 TraesCS1D01G135200 chr2D 80973981 80975468 1487 False 427.333333 577 85.146000 744 3067 3 chr2D.!!$F1 2323

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.988145 TGGGGAATCTCGGCATCCTT 60.988 55.000 0.00 0.0 33.61 3.36 F
593 596 3.052329 AGAATTCTCTCTCCCCCAATCC 58.948 50.000 0.88 0.0 0.00 3.01 F
2115 2217 0.908198 ATGAGTCACCCTCTTCTGCC 59.092 55.000 0.00 0.0 41.11 4.85 F
2155 2257 1.781786 TACTCCAGAGATGCCTCCAC 58.218 55.000 0.70 0.0 40.30 4.02 F
3313 3417 1.060698 GCGATAGGCGAACACAAACTC 59.939 52.381 0.00 0.0 44.57 3.01 F
3935 4039 0.236711 CAACTGCAAGCTGAACTCCG 59.763 55.000 5.93 0.0 37.60 4.63 F
4063 4167 0.615331 GGACATTGAGGAGCTGACCA 59.385 55.000 0.00 0.0 0.00 4.02 F
5381 5486 1.632422 GTTGGAAAATCATGCTGCGG 58.368 50.000 0.00 0.0 0.00 5.69 F
6679 6784 0.994995 CCTCTTCTGTGAATGTCGCG 59.005 55.000 0.00 0.0 0.00 5.87 F
7874 7983 0.175302 CGTCTTCAGCAGAGCCTGAT 59.825 55.000 6.40 0.0 41.18 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1646 1748 3.374042 TCAACTCCCACCAAGAAACAA 57.626 42.857 0.00 0.00 0.00 2.83 R
2152 2254 1.191535 TATGTTGGACGGGAGAGTGG 58.808 55.000 0.00 0.00 0.00 4.00 R
2939 3043 0.236711 CTTCAGCTCACAAACAGCGG 59.763 55.000 0.00 0.00 42.14 5.52 R
3747 3851 1.202498 TCAATCTCTCGATGCAGCCTG 60.202 52.381 0.00 0.00 0.00 4.85 R
5282 5387 2.055689 CTCTCCAAGGCCACCACACA 62.056 60.000 5.01 0.00 0.00 3.72 R
5317 5422 3.409026 AGAGCCACATTCTCGTCTTTT 57.591 42.857 0.00 0.00 35.79 2.27 R
5486 5591 4.562757 CCTGTCGATGTTAAGGACCTTCAA 60.563 45.833 10.87 1.15 30.92 2.69 R
6774 6879 1.135489 CAATATGGGCATCTCGCATGC 60.135 52.381 7.91 7.91 46.27 4.06 R
8104 8213 0.249447 CTCCGCGTTCATGCTATCCA 60.249 55.000 4.92 0.00 0.00 3.41 R
8835 9003 0.317160 CGCATCCACGGCCTTAGATA 59.683 55.000 0.00 0.00 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.988145 TGGGGAATCTCGGCATCCTT 60.988 55.000 0.00 0.00 33.61 3.36
142 143 6.975772 TGTAGTTGTTTTCTTTATTGTGTGGC 59.024 34.615 0.00 0.00 0.00 5.01
593 596 3.052329 AGAATTCTCTCTCCCCCAATCC 58.948 50.000 0.88 0.00 0.00 3.01
680 683 5.757850 ATCTTTGTGTTCTTCCAGTCAAC 57.242 39.130 0.00 0.00 0.00 3.18
980 985 5.811100 GGTATTACTTACTGGTTCAGAGTGC 59.189 44.000 1.59 0.00 35.18 4.40
1612 1672 7.337689 CCTTCTCATCTGGAAATGTTTCATGTA 59.662 37.037 7.69 0.00 38.92 2.29
1646 1748 4.959080 AGGTATCCCAATTCCCATTTTGT 58.041 39.130 0.00 0.00 0.00 2.83
1811 1913 3.199071 AGTGATTGAATTACGCCCCTGTA 59.801 43.478 0.00 0.00 0.00 2.74
1929 2031 5.242171 TGAAGATGCTGATTCTTTTGCAAGA 59.758 36.000 0.00 0.00 38.96 3.02
2079 2181 8.360390 AGAACAATTTCTGAAGTATTCCCAAAC 58.640 33.333 6.34 0.00 46.93 2.93
2115 2217 0.908198 ATGAGTCACCCTCTTCTGCC 59.092 55.000 0.00 0.00 41.11 4.85
2152 2254 2.036992 CCACATACTCCAGAGATGCCTC 59.963 54.545 0.70 0.00 39.72 4.70
2155 2257 1.781786 TACTCCAGAGATGCCTCCAC 58.218 55.000 0.70 0.00 40.30 4.02
2239 2341 3.430098 GGAAACCAGTGCATTGTCAAACA 60.430 43.478 8.53 0.00 0.00 2.83
2296 2398 2.614481 GGTGGTGAAAATGCTCCTCGTA 60.614 50.000 0.00 0.00 0.00 3.43
2297 2399 3.270877 GTGGTGAAAATGCTCCTCGTAT 58.729 45.455 0.00 0.00 0.00 3.06
2474 2576 2.431430 GCGGGCAAAGAAAGCTGC 60.431 61.111 0.00 0.00 37.86 5.25
2784 2886 2.037772 TCTCCACTCAAGCTTTCAGGAC 59.962 50.000 0.00 0.00 0.00 3.85
2939 3043 1.364626 CGCAAGATGCACCTGGAGAC 61.365 60.000 0.00 0.00 45.36 3.36
3122 3226 1.227497 GCGCTGAGAAGGATGGAGG 60.227 63.158 0.00 0.00 0.00 4.30
3313 3417 1.060698 GCGATAGGCGAACACAAACTC 59.939 52.381 0.00 0.00 44.57 3.01
3611 3715 2.744202 AGAAAATGCAGTTACTGGAGCG 59.256 45.455 14.63 0.00 34.87 5.03
3618 3722 2.349886 GCAGTTACTGGAGCGAGAAATG 59.650 50.000 14.63 0.00 31.21 2.32
3747 3851 2.560542 TCAGTCTCAGGAAGAAGTGAGC 59.439 50.000 0.00 0.00 40.13 4.26
3785 3889 4.877378 TTGAGAAGCTGAATGGCAAATT 57.123 36.364 0.00 0.00 34.17 1.82
3823 3927 4.040217 ACTTGTCATCTGAACTCAAGAGCT 59.960 41.667 18.54 0.00 38.82 4.09
3865 3969 3.983344 CGAAAAAGATGCAACCCTTCTTG 59.017 43.478 0.41 0.00 37.82 3.02
3895 3999 3.497048 GGAGTCCTCGATGAGAGTATCCA 60.497 52.174 0.41 0.00 45.44 3.41
3935 4039 0.236711 CAACTGCAAGCTGAACTCCG 59.763 55.000 5.93 0.00 37.60 4.63
4063 4167 0.615331 GGACATTGAGGAGCTGACCA 59.385 55.000 0.00 0.00 0.00 4.02
4125 4229 7.503521 TGAGAACATTGTAAACAAGCATACA 57.496 32.000 1.62 0.00 39.47 2.29
4156 4260 4.060900 CCATATCCTCCGTGAACAGAATG 58.939 47.826 0.00 0.00 46.00 2.67
4176 4280 8.517062 AGAATGTTTCTGCTGAGCTTATAATT 57.483 30.769 5.83 0.00 38.91 1.40
4191 4295 7.945134 AGCTTATAATTAAAGACCTGCATTGG 58.055 34.615 9.97 0.00 0.00 3.16
5197 5302 2.489329 GCATGCAAACAGCCTAGAGAAA 59.511 45.455 14.21 0.00 44.83 2.52
5317 5422 5.235850 TGGAGAGTAGTTTGGTTTATGCA 57.764 39.130 0.00 0.00 0.00 3.96
5381 5486 1.632422 GTTGGAAAATCATGCTGCGG 58.368 50.000 0.00 0.00 0.00 5.69
5486 5591 2.982488 AGAGAAGGGATTTCACACCACT 59.018 45.455 0.00 0.00 38.31 4.00
5549 5654 2.997485 AGCTCAGGACGAAATTTTGC 57.003 45.000 5.27 0.00 0.00 3.68
5755 5860 8.497554 GCAACAGAATTGATTTCTTTGCAAATA 58.502 29.630 13.23 2.14 45.46 1.40
5789 5894 7.219484 CAACTTTTGGAATCTAATGACCAGT 57.781 36.000 0.00 0.00 33.85 4.00
6088 6193 5.071519 AGCATCTGCATTGGTATCTCTTACT 59.928 40.000 4.79 0.00 45.16 2.24
6099 6204 6.377080 TGGTATCTCTTACTGATGAGATGGT 58.623 40.000 13.69 0.00 46.01 3.55
6150 6255 6.486253 TGATAATGAAGTCAAAGTGCTGAC 57.514 37.500 0.00 0.00 45.10 3.51
6416 6521 1.896660 GTTGTTGGGGCGCTTCAGA 60.897 57.895 7.64 0.00 0.00 3.27
6467 6572 7.775093 TGAAAGGAGAACTTGAGAAGAAAATCA 59.225 33.333 0.00 0.00 39.96 2.57
6679 6784 0.994995 CCTCTTCTGTGAATGTCGCG 59.005 55.000 0.00 0.00 0.00 5.87
6701 6806 4.330074 CGGTCTACAAAGAAATGGCACTAG 59.670 45.833 0.00 0.00 32.16 2.57
6850 6955 2.165845 AGAAAATGCAGAGCTGAATGCC 59.834 45.455 11.48 0.00 44.23 4.40
6945 7050 3.327757 TCTCTGTCAAAACCCTACAGCAT 59.672 43.478 0.00 0.00 40.34 3.79
7076 7185 3.937814 TCCTTGATGTGTAAGCATCGTT 58.062 40.909 0.00 0.00 45.98 3.85
7529 7638 5.874093 TCTGAGAAGGAGAAGCAAAAAGAT 58.126 37.500 0.00 0.00 0.00 2.40
7532 7641 3.509184 AGAAGGAGAAGCAAAAAGATGGC 59.491 43.478 0.00 0.00 0.00 4.40
7844 7953 4.043310 AGAGACCTGGGAATCATCAACAAA 59.957 41.667 0.00 0.00 0.00 2.83
7874 7983 0.175302 CGTCTTCAGCAGAGCCTGAT 59.825 55.000 6.40 0.00 41.18 2.90
7897 8006 1.136891 GTTATGGGGCAAGAATGTGGC 59.863 52.381 0.00 0.00 43.12 5.01
8104 8213 1.739067 GAGAATTACCCTGCGCTGTT 58.261 50.000 9.73 0.00 0.00 3.16
8117 8226 1.268234 GCGCTGTTGGATAGCATGAAC 60.268 52.381 0.00 0.00 41.18 3.18
8186 8295 2.033194 GCGGAAAGGGTCGGACAAG 61.033 63.158 10.76 0.00 0.00 3.16
8279 8388 0.671781 CAAGGCTCAAGGTGTCGGAG 60.672 60.000 0.00 0.00 0.00 4.63
8349 8458 1.348036 ACCGTGGAAAGAAGAAGAGGG 59.652 52.381 0.00 0.00 0.00 4.30
8351 8460 1.270839 CGTGGAAAGAAGAAGAGGGCA 60.271 52.381 0.00 0.00 0.00 5.36
8406 8517 2.559668 ACTGAGCCATGACCATTTTGTG 59.440 45.455 0.00 0.00 0.00 3.33
8491 8605 5.030820 AGGAAACCATACTTGTAGTAGGCT 58.969 41.667 0.00 0.00 33.66 4.58
8620 8742 4.095932 CGGCATCAATTGGATAGATGGATG 59.904 45.833 5.42 0.00 39.53 3.51
8638 8760 6.713762 TGGATGAGGCATTTTATTTACCTG 57.286 37.500 0.00 0.00 0.00 4.00
8686 8854 3.368248 CATCAGATTTTGTCACCCCCAT 58.632 45.455 0.00 0.00 0.00 4.00
8787 8955 3.781307 CCGGGGATCTTGCCGACA 61.781 66.667 0.00 0.00 0.00 4.35
8822 8990 4.443266 GCTGAGTTCGGCGCCTCT 62.443 66.667 26.68 19.35 38.61 3.69
8823 8991 2.262915 CTGAGTTCGGCGCCTCTT 59.737 61.111 26.68 7.13 0.00 2.85
8824 8992 2.048222 TGAGTTCGGCGCCTCTTG 60.048 61.111 26.68 9.07 0.00 3.02
8826 8994 3.941657 GAGTTCGGCGCCTCTTGCT 62.942 63.158 26.68 14.77 38.05 3.91
8828 8996 2.742372 TTCGGCGCCTCTTGCTTC 60.742 61.111 26.68 0.00 38.05 3.86
8829 8997 3.529341 TTCGGCGCCTCTTGCTTCA 62.529 57.895 26.68 0.00 38.05 3.02
8830 8998 2.803155 TTCGGCGCCTCTTGCTTCAT 62.803 55.000 26.68 0.00 38.05 2.57
8831 8999 2.401766 CGGCGCCTCTTGCTTCATT 61.402 57.895 26.68 0.00 38.05 2.57
8833 9001 1.028868 GGCGCCTCTTGCTTCATTCT 61.029 55.000 22.15 0.00 38.05 2.40
8835 9003 1.200948 GCGCCTCTTGCTTCATTCTTT 59.799 47.619 0.00 0.00 38.05 2.52
8836 9004 2.420022 GCGCCTCTTGCTTCATTCTTTA 59.580 45.455 0.00 0.00 38.05 1.85
8837 9005 3.065925 GCGCCTCTTGCTTCATTCTTTAT 59.934 43.478 0.00 0.00 38.05 1.40
8838 9006 4.787882 GCGCCTCTTGCTTCATTCTTTATC 60.788 45.833 0.00 0.00 38.05 1.75
8839 9007 4.574013 CGCCTCTTGCTTCATTCTTTATCT 59.426 41.667 0.00 0.00 38.05 1.98
8840 9008 5.755375 CGCCTCTTGCTTCATTCTTTATCTA 59.245 40.000 0.00 0.00 38.05 1.98
8842 9010 7.518052 CGCCTCTTGCTTCATTCTTTATCTAAG 60.518 40.741 0.00 0.00 38.05 2.18
8843 9011 7.255070 GCCTCTTGCTTCATTCTTTATCTAAGG 60.255 40.741 0.00 0.00 36.87 2.69
8844 9012 7.255070 CCTCTTGCTTCATTCTTTATCTAAGGC 60.255 40.741 0.00 0.00 34.46 4.35
8845 9013 6.543831 TCTTGCTTCATTCTTTATCTAAGGCC 59.456 38.462 0.00 0.00 34.46 5.19
8846 9014 4.816385 TGCTTCATTCTTTATCTAAGGCCG 59.184 41.667 0.00 0.00 34.46 6.13
8847 9015 4.816925 GCTTCATTCTTTATCTAAGGCCGT 59.183 41.667 0.00 0.00 34.46 5.68
8848 9016 5.277538 GCTTCATTCTTTATCTAAGGCCGTG 60.278 44.000 0.00 0.00 34.46 4.94
8849 9017 4.703897 TCATTCTTTATCTAAGGCCGTGG 58.296 43.478 0.00 0.00 34.46 4.94
8850 9018 4.407621 TCATTCTTTATCTAAGGCCGTGGA 59.592 41.667 7.28 7.28 34.46 4.02
8851 9019 5.071788 TCATTCTTTATCTAAGGCCGTGGAT 59.928 40.000 20.47 20.47 34.46 3.41
8852 9020 4.336889 TCTTTATCTAAGGCCGTGGATG 57.663 45.455 24.32 10.43 34.46 3.51
8853 9021 2.543777 TTATCTAAGGCCGTGGATGC 57.456 50.000 24.32 0.00 0.00 3.91
8854 9022 0.317160 TATCTAAGGCCGTGGATGCG 59.683 55.000 24.32 0.00 0.00 4.73
8857 9025 3.613877 TAAGGCCGTGGATGCGCAA 62.614 57.895 17.11 0.00 0.00 4.85
8863 9031 2.747460 GTGGATGCGCAAGGCTCA 60.747 61.111 17.11 5.76 44.05 4.26
8886 9054 1.526225 GCGGGCATTTCTCTACCCC 60.526 63.158 0.00 0.00 39.34 4.95
8887 9055 1.912220 CGGGCATTTCTCTACCCCA 59.088 57.895 0.00 0.00 39.34 4.96
8893 9061 2.369394 CATTTCTCTACCCCACCTTGC 58.631 52.381 0.00 0.00 0.00 4.01
8900 9068 4.785453 CCCCACCTTGCTCCGCTC 62.785 72.222 0.00 0.00 0.00 5.03
8905 9073 3.764466 CCTTGCTCCGCTCGACCT 61.764 66.667 0.00 0.00 0.00 3.85
8943 11993 5.470047 AGGGCTTTCTTATAATCGATCGT 57.530 39.130 15.94 0.00 0.00 3.73
8946 11996 5.227908 GGCTTTCTTATAATCGATCGTGGA 58.772 41.667 15.94 1.39 0.00 4.02
8983 12033 3.471495 GGTTCACCGAAATGACATGTC 57.529 47.619 19.27 19.27 0.00 3.06
8984 12034 2.161609 GGTTCACCGAAATGACATGTCC 59.838 50.000 22.85 6.58 0.00 4.02
8985 12035 2.811431 GTTCACCGAAATGACATGTCCA 59.189 45.455 22.85 11.43 0.00 4.02
8986 12036 2.698803 TCACCGAAATGACATGTCCAG 58.301 47.619 22.85 9.30 0.00 3.86
8987 12037 1.739466 CACCGAAATGACATGTCCAGG 59.261 52.381 22.85 18.63 0.00 4.45
8988 12038 1.351017 ACCGAAATGACATGTCCAGGT 59.649 47.619 22.85 19.20 0.00 4.00
8992 12042 4.229096 CGAAATGACATGTCCAGGTTTTG 58.771 43.478 22.85 16.25 0.00 2.44
9004 12054 1.112916 AGGTTTTGGGTTTGCCTCCG 61.113 55.000 0.00 0.00 34.45 4.63
9072 12122 4.076244 GGCTCGGCCTCGTCTATA 57.924 61.111 0.00 0.00 46.69 1.31
9073 12123 2.569183 GGCTCGGCCTCGTCTATAT 58.431 57.895 0.00 0.00 46.69 0.86
9074 12124 0.889306 GGCTCGGCCTCGTCTATATT 59.111 55.000 0.00 0.00 46.69 1.28
9075 12125 1.402984 GGCTCGGCCTCGTCTATATTG 60.403 57.143 0.00 0.00 46.69 1.90
9076 12126 1.983972 CTCGGCCTCGTCTATATTGC 58.016 55.000 0.00 0.00 37.69 3.56
9077 12127 1.542030 CTCGGCCTCGTCTATATTGCT 59.458 52.381 0.00 0.00 37.69 3.91
9078 12128 1.540267 TCGGCCTCGTCTATATTGCTC 59.460 52.381 0.00 0.00 37.69 4.26
9079 12129 1.402984 CGGCCTCGTCTATATTGCTCC 60.403 57.143 0.00 0.00 0.00 4.70
9080 12130 1.618837 GGCCTCGTCTATATTGCTCCA 59.381 52.381 0.00 0.00 0.00 3.86
9081 12131 2.037251 GGCCTCGTCTATATTGCTCCAA 59.963 50.000 0.00 0.00 0.00 3.53
9082 12132 3.494398 GGCCTCGTCTATATTGCTCCAAA 60.494 47.826 0.00 0.00 0.00 3.28
9083 12133 3.743396 GCCTCGTCTATATTGCTCCAAAG 59.257 47.826 0.00 0.00 0.00 2.77
9096 12146 3.010200 CTCCAAAGCAGATAAAGGCCT 57.990 47.619 0.00 0.00 0.00 5.19
9097 12147 3.359950 CTCCAAAGCAGATAAAGGCCTT 58.640 45.455 13.78 13.78 0.00 4.35
9098 12148 3.091545 TCCAAAGCAGATAAAGGCCTTG 58.908 45.455 21.33 8.06 32.59 3.61
9099 12149 2.417787 CCAAAGCAGATAAAGGCCTTGC 60.418 50.000 21.33 18.87 31.68 4.01
9100 12150 1.098050 AAGCAGATAAAGGCCTTGCG 58.902 50.000 21.33 7.13 0.00 4.85
9101 12151 0.749454 AGCAGATAAAGGCCTTGCGG 60.749 55.000 21.33 13.30 0.00 5.69
9102 12152 1.032114 GCAGATAAAGGCCTTGCGGT 61.032 55.000 21.33 5.57 0.00 5.68
9103 12153 0.734889 CAGATAAAGGCCTTGCGGTG 59.265 55.000 21.33 11.13 0.00 4.94
9104 12154 1.032114 AGATAAAGGCCTTGCGGTGC 61.032 55.000 21.33 5.87 0.00 5.01
9105 12155 1.304052 ATAAAGGCCTTGCGGTGCA 60.304 52.632 21.33 0.00 36.47 4.57
9106 12156 1.595093 ATAAAGGCCTTGCGGTGCAC 61.595 55.000 21.33 8.80 38.71 4.57
9111 12161 4.974721 CCTTGCGGTGCACCCCTT 62.975 66.667 29.95 0.00 38.71 3.95
9112 12162 3.673484 CTTGCGGTGCACCCCTTG 61.673 66.667 29.95 16.82 38.71 3.61
9113 12163 4.514585 TTGCGGTGCACCCCTTGT 62.515 61.111 29.95 0.00 38.71 3.16
9114 12164 4.947147 TGCGGTGCACCCCTTGTC 62.947 66.667 29.95 12.25 31.71 3.18
9118 12168 4.947147 GTGCACCCCTTGTCGGCA 62.947 66.667 5.22 0.00 0.00 5.69
9119 12169 4.947147 TGCACCCCTTGTCGGCAC 62.947 66.667 0.00 0.00 0.00 5.01
9141 12191 4.838152 CCGGTCCTGACGGCCATG 62.838 72.222 2.24 0.00 45.34 3.66
9142 12192 4.838152 CGGTCCTGACGGCCATGG 62.838 72.222 7.63 7.63 0.00 3.66
9143 12193 3.399181 GGTCCTGACGGCCATGGA 61.399 66.667 18.40 0.64 0.00 3.41
9144 12194 2.125106 GTCCTGACGGCCATGGAC 60.125 66.667 18.40 13.35 41.52 4.02
9145 12195 3.399181 TCCTGACGGCCATGGACC 61.399 66.667 18.40 15.42 0.00 4.46
9146 12196 3.402681 CCTGACGGCCATGGACCT 61.403 66.667 18.40 0.85 0.00 3.85
9147 12197 2.124983 CTGACGGCCATGGACCTG 60.125 66.667 18.40 14.15 0.00 4.00
9148 12198 4.408821 TGACGGCCATGGACCTGC 62.409 66.667 18.40 10.87 0.00 4.85
9152 12202 3.134127 GGCCATGGACCTGCGTTC 61.134 66.667 18.40 0.00 0.00 3.95
9153 12203 2.045926 GCCATGGACCTGCGTTCT 60.046 61.111 18.40 0.00 0.00 3.01
9154 12204 2.109126 GCCATGGACCTGCGTTCTC 61.109 63.158 18.40 0.00 0.00 2.87
9155 12205 1.450312 CCATGGACCTGCGTTCTCC 60.450 63.158 5.56 0.00 0.00 3.71
9156 12206 1.296392 CATGGACCTGCGTTCTCCA 59.704 57.895 0.00 0.00 38.47 3.86
9157 12207 0.742281 CATGGACCTGCGTTCTCCAG 60.742 60.000 0.00 0.00 37.51 3.86
9158 12208 1.194781 ATGGACCTGCGTTCTCCAGT 61.195 55.000 0.00 0.00 37.51 4.00
9159 12209 0.541063 TGGACCTGCGTTCTCCAGTA 60.541 55.000 0.00 0.00 30.27 2.74
9160 12210 0.824759 GGACCTGCGTTCTCCAGTAT 59.175 55.000 0.00 0.00 0.00 2.12
9161 12211 1.202428 GGACCTGCGTTCTCCAGTATC 60.202 57.143 0.00 0.00 0.00 2.24
9162 12212 0.824759 ACCTGCGTTCTCCAGTATCC 59.175 55.000 0.00 0.00 0.00 2.59
9163 12213 0.824109 CCTGCGTTCTCCAGTATCCA 59.176 55.000 0.00 0.00 0.00 3.41
9164 12214 1.414181 CCTGCGTTCTCCAGTATCCAT 59.586 52.381 0.00 0.00 0.00 3.41
9165 12215 2.628178 CCTGCGTTCTCCAGTATCCATA 59.372 50.000 0.00 0.00 0.00 2.74
9166 12216 3.305676 CCTGCGTTCTCCAGTATCCATAG 60.306 52.174 0.00 0.00 0.00 2.23
9167 12217 2.035961 TGCGTTCTCCAGTATCCATAGC 59.964 50.000 0.00 0.00 0.00 2.97
9168 12218 2.035961 GCGTTCTCCAGTATCCATAGCA 59.964 50.000 0.00 0.00 0.00 3.49
9169 12219 3.306364 GCGTTCTCCAGTATCCATAGCAT 60.306 47.826 0.00 0.00 0.00 3.79
9170 12220 4.240888 CGTTCTCCAGTATCCATAGCATG 58.759 47.826 0.00 0.00 0.00 4.06
9171 12221 3.969287 TCTCCAGTATCCATAGCATGC 57.031 47.619 10.51 10.51 0.00 4.06
9172 12222 3.514539 TCTCCAGTATCCATAGCATGCT 58.485 45.455 25.99 25.99 0.00 3.79
9173 12223 4.677182 TCTCCAGTATCCATAGCATGCTA 58.323 43.478 28.72 28.72 0.00 3.49
9174 12224 4.708909 TCTCCAGTATCCATAGCATGCTAG 59.291 45.833 29.78 21.00 31.45 3.42
9175 12225 3.196469 TCCAGTATCCATAGCATGCTAGC 59.804 47.826 29.78 8.10 31.45 3.42
9176 12226 3.185330 CAGTATCCATAGCATGCTAGCG 58.815 50.000 29.78 22.61 40.15 4.26
9177 12227 2.828520 AGTATCCATAGCATGCTAGCGT 59.171 45.455 29.78 18.30 40.15 5.07
9178 12228 2.376808 ATCCATAGCATGCTAGCGTC 57.623 50.000 29.78 2.42 40.15 5.19
9179 12229 0.318441 TCCATAGCATGCTAGCGTCC 59.682 55.000 29.78 0.00 40.15 4.79
9180 12230 0.319728 CCATAGCATGCTAGCGTCCT 59.680 55.000 29.78 11.66 40.15 3.85
9181 12231 1.671261 CCATAGCATGCTAGCGTCCTC 60.671 57.143 29.78 0.00 40.15 3.71
9182 12232 1.271934 CATAGCATGCTAGCGTCCTCT 59.728 52.381 29.78 10.21 40.15 3.69
9183 12233 2.271944 TAGCATGCTAGCGTCCTCTA 57.728 50.000 23.52 6.27 40.15 2.43
9184 12234 0.671251 AGCATGCTAGCGTCCTCTAC 59.329 55.000 21.21 0.00 40.15 2.59
9185 12235 0.319125 GCATGCTAGCGTCCTCTACC 60.319 60.000 11.37 0.00 0.00 3.18
9186 12236 1.032794 CATGCTAGCGTCCTCTACCA 58.967 55.000 6.43 0.00 0.00 3.25
9187 12237 1.000827 CATGCTAGCGTCCTCTACCAG 60.001 57.143 6.43 0.00 0.00 4.00
9188 12238 1.360911 GCTAGCGTCCTCTACCAGC 59.639 63.158 0.00 0.00 0.00 4.85
9189 12239 1.384989 GCTAGCGTCCTCTACCAGCA 61.385 60.000 0.00 0.00 0.00 4.41
9190 12240 1.323412 CTAGCGTCCTCTACCAGCAT 58.677 55.000 0.00 0.00 0.00 3.79
9191 12241 1.000827 CTAGCGTCCTCTACCAGCATG 60.001 57.143 0.00 0.00 0.00 4.06
9203 12253 3.252979 CAGCATGGTGATGTGGACA 57.747 52.632 20.20 0.00 31.50 4.02
9204 12254 1.758936 CAGCATGGTGATGTGGACAT 58.241 50.000 20.20 0.00 39.70 3.06
9205 12255 2.921821 CAGCATGGTGATGTGGACATA 58.078 47.619 20.20 0.00 36.57 2.29
9206 12256 2.876550 CAGCATGGTGATGTGGACATAG 59.123 50.000 20.20 0.00 36.57 2.23
9207 12257 1.605710 GCATGGTGATGTGGACATAGC 59.394 52.381 0.00 0.00 36.57 2.97
9208 12258 2.747467 GCATGGTGATGTGGACATAGCT 60.747 50.000 0.00 0.00 36.57 3.32
9209 12259 3.494924 GCATGGTGATGTGGACATAGCTA 60.495 47.826 0.00 0.00 36.57 3.32
9210 12260 4.805272 GCATGGTGATGTGGACATAGCTAT 60.805 45.833 0.00 0.00 36.57 2.97
9211 12261 4.607293 TGGTGATGTGGACATAGCTATC 57.393 45.455 2.34 0.00 36.57 2.08
9212 12262 3.966665 TGGTGATGTGGACATAGCTATCA 59.033 43.478 2.34 0.00 36.57 2.15
9213 12263 4.594491 TGGTGATGTGGACATAGCTATCAT 59.406 41.667 2.34 3.89 36.57 2.45
9214 12264 5.779771 TGGTGATGTGGACATAGCTATCATA 59.220 40.000 2.34 0.00 36.57 2.15
9215 12265 6.269769 TGGTGATGTGGACATAGCTATCATAA 59.730 38.462 2.34 0.00 36.57 1.90
9216 12266 7.161404 GGTGATGTGGACATAGCTATCATAAA 58.839 38.462 2.34 0.00 36.57 1.40
9217 12267 7.661437 GGTGATGTGGACATAGCTATCATAAAA 59.339 37.037 2.34 0.00 36.57 1.52
9218 12268 9.056005 GTGATGTGGACATAGCTATCATAAAAA 57.944 33.333 2.34 0.00 36.57 1.94
9219 12269 9.056005 TGATGTGGACATAGCTATCATAAAAAC 57.944 33.333 2.34 0.00 36.57 2.43
9220 12270 7.477144 TGTGGACATAGCTATCATAAAAACG 57.523 36.000 2.34 0.00 0.00 3.60
9221 12271 7.045416 TGTGGACATAGCTATCATAAAAACGT 58.955 34.615 2.34 0.00 0.00 3.99
9222 12272 7.223971 TGTGGACATAGCTATCATAAAAACGTC 59.776 37.037 2.34 5.01 0.00 4.34
9223 12273 7.438459 GTGGACATAGCTATCATAAAAACGTCT 59.562 37.037 2.34 0.00 0.00 4.18
9224 12274 8.635328 TGGACATAGCTATCATAAAAACGTCTA 58.365 33.333 2.34 0.43 0.00 2.59
9225 12275 9.472361 GGACATAGCTATCATAAAAACGTCTAA 57.528 33.333 2.34 0.00 0.00 2.10
9275 12325 8.906636 TCAGATACTTTCGTTTCTACATACAC 57.093 34.615 0.00 0.00 31.46 2.90
9276 12326 8.517056 TCAGATACTTTCGTTTCTACATACACA 58.483 33.333 0.00 0.00 31.46 3.72
9277 12327 9.302345 CAGATACTTTCGTTTCTACATACACAT 57.698 33.333 0.00 0.00 31.46 3.21
9278 12328 9.302345 AGATACTTTCGTTTCTACATACACATG 57.698 33.333 0.00 0.00 38.21 3.21
9279 12329 9.297586 GATACTTTCGTTTCTACATACACATGA 57.702 33.333 0.00 0.00 35.96 3.07
9280 12330 9.817809 ATACTTTCGTTTCTACATACACATGAT 57.182 29.630 0.00 0.00 35.96 2.45
9281 12331 8.547967 ACTTTCGTTTCTACATACACATGATT 57.452 30.769 0.00 0.00 35.96 2.57
9282 12332 8.999431 ACTTTCGTTTCTACATACACATGATTT 58.001 29.630 0.00 0.00 35.96 2.17
9286 12336 9.647797 TCGTTTCTACATACACATGATTTAACT 57.352 29.630 0.00 0.00 35.96 2.24
9287 12337 9.689075 CGTTTCTACATACACATGATTTAACTG 57.311 33.333 0.00 0.00 35.96 3.16
9290 12340 9.936759 TTCTACATACACATGATTTAACTGACA 57.063 29.630 0.00 0.00 35.96 3.58
9293 12343 8.791327 ACATACACATGATTTAACTGACATGA 57.209 30.769 0.00 0.00 41.45 3.07
9294 12344 9.230122 ACATACACATGATTTAACTGACATGAA 57.770 29.630 0.00 0.00 41.45 2.57
9303 12353 9.346005 TGATTTAACTGACATGAATATGATGCT 57.654 29.630 0.00 0.00 37.73 3.79
9306 12356 6.775939 AACTGACATGAATATGATGCTACG 57.224 37.500 0.00 0.00 37.73 3.51
9307 12357 4.687948 ACTGACATGAATATGATGCTACGC 59.312 41.667 0.00 0.00 37.73 4.42
9308 12358 4.886579 TGACATGAATATGATGCTACGCT 58.113 39.130 0.00 0.00 37.73 5.07
9309 12359 5.299949 TGACATGAATATGATGCTACGCTT 58.700 37.500 0.00 0.00 37.73 4.68
9310 12360 6.454795 TGACATGAATATGATGCTACGCTTA 58.545 36.000 0.00 0.00 37.73 3.09
9311 12361 7.099120 TGACATGAATATGATGCTACGCTTAT 58.901 34.615 0.00 0.00 37.73 1.73
9312 12362 7.603784 TGACATGAATATGATGCTACGCTTATT 59.396 33.333 0.00 0.00 37.73 1.40
9313 12363 9.087424 GACATGAATATGATGCTACGCTTATTA 57.913 33.333 0.00 0.00 37.73 0.98
9314 12364 9.605275 ACATGAATATGATGCTACGCTTATTAT 57.395 29.630 0.00 0.00 37.73 1.28
9341 12391 9.689501 TTTATTTACTTGTACCCAGGAATAAGG 57.310 33.333 0.00 0.00 0.00 2.69
9354 12404 7.282332 CCAGGAATAAGGGAATCAGAAAATC 57.718 40.000 0.00 0.00 0.00 2.17
9355 12405 6.835488 CCAGGAATAAGGGAATCAGAAAATCA 59.165 38.462 0.00 0.00 0.00 2.57
9356 12406 7.342799 CCAGGAATAAGGGAATCAGAAAATCAA 59.657 37.037 0.00 0.00 0.00 2.57
9357 12407 8.921205 CAGGAATAAGGGAATCAGAAAATCAAT 58.079 33.333 0.00 0.00 0.00 2.57
9358 12408 9.498039 AGGAATAAGGGAATCAGAAAATCAATT 57.502 29.630 0.00 0.00 0.00 2.32
9364 12414 9.948964 AAGGGAATCAGAAAATCAATTAAAAGG 57.051 29.630 0.00 0.00 0.00 3.11
9365 12415 8.542926 AGGGAATCAGAAAATCAATTAAAAGGG 58.457 33.333 0.00 0.00 0.00 3.95
9366 12416 8.539544 GGGAATCAGAAAATCAATTAAAAGGGA 58.460 33.333 0.00 0.00 0.00 4.20
9367 12417 9.591792 GGAATCAGAAAATCAATTAAAAGGGAG 57.408 33.333 0.00 0.00 0.00 4.30
9368 12418 9.091784 GAATCAGAAAATCAATTAAAAGGGAGC 57.908 33.333 0.00 0.00 0.00 4.70
9369 12419 7.537596 TCAGAAAATCAATTAAAAGGGAGCA 57.462 32.000 0.00 0.00 0.00 4.26
9370 12420 7.961351 TCAGAAAATCAATTAAAAGGGAGCAA 58.039 30.769 0.00 0.00 0.00 3.91
9371 12421 8.596293 TCAGAAAATCAATTAAAAGGGAGCAAT 58.404 29.630 0.00 0.00 0.00 3.56
9372 12422 9.874205 CAGAAAATCAATTAAAAGGGAGCAATA 57.126 29.630 0.00 0.00 0.00 1.90
9373 12423 9.875691 AGAAAATCAATTAAAAGGGAGCAATAC 57.124 29.630 0.00 0.00 0.00 1.89
9374 12424 9.875691 GAAAATCAATTAAAAGGGAGCAATACT 57.124 29.630 0.00 0.00 0.00 2.12
9375 12425 9.875691 AAAATCAATTAAAAGGGAGCAATACTC 57.124 29.630 0.00 0.00 45.45 2.59
9396 12446 3.515286 GCATGCATGCGCTCCACT 61.515 61.111 33.99 0.00 44.67 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.404426 TGGGTCGACTCTCTGAGGAA 59.596 55.000 17.97 0.00 33.35 3.36
142 143 0.387202 AGATGGATCCTCGAAGCGTG 59.613 55.000 14.23 0.00 0.00 5.34
425 427 3.465871 TCCAAAAGCAAAATCAAGCCAC 58.534 40.909 0.00 0.00 0.00 5.01
593 596 7.636326 AGAAGACAAAACGTGTTAGGTAATTG 58.364 34.615 0.00 0.00 41.96 2.32
680 683 1.532604 TACAGGTGTGAGGTCTGCGG 61.533 60.000 0.00 0.00 32.19 5.69
936 941 2.761208 CCTCACTTCCTCGGTAGAATGT 59.239 50.000 0.00 0.00 0.00 2.71
1181 1191 8.305317 GTGTAACTGAGAGAACCTAGTAACATT 58.695 37.037 0.00 0.00 0.00 2.71
1646 1748 3.374042 TCAACTCCCACCAAGAAACAA 57.626 42.857 0.00 0.00 0.00 2.83
1929 2031 4.270834 TCTTGTAGTACATCTCCGCTCTT 58.729 43.478 3.28 0.00 0.00 2.85
2079 2181 2.820197 CTCATCCATTGATGGCATCTGG 59.180 50.000 26.49 24.68 46.92 3.86
2115 2217 1.228124 TGGTTCCACTTCTTGGCCG 60.228 57.895 0.00 0.00 46.47 6.13
2152 2254 1.191535 TATGTTGGACGGGAGAGTGG 58.808 55.000 0.00 0.00 0.00 4.00
2155 2257 3.819564 TTCATATGTTGGACGGGAGAG 57.180 47.619 1.90 0.00 0.00 3.20
2193 2295 4.838423 TGAGAGTGTGAACCATTCCTCTTA 59.162 41.667 0.00 0.00 29.65 2.10
2239 2341 4.156455 TGGACTGCTTCAGACTTTTTCT 57.844 40.909 0.29 0.00 35.18 2.52
2296 2398 4.511082 CCGTGCTTTTCCATCAAAAACAAT 59.489 37.500 0.00 0.00 32.97 2.71
2297 2399 3.868077 CCGTGCTTTTCCATCAAAAACAA 59.132 39.130 0.00 0.00 32.97 2.83
2474 2576 5.942236 TCCTTCTGATTTTGGATCTCAGTTG 59.058 40.000 8.33 4.02 38.05 3.16
2784 2886 0.636733 GCATGCGCTTTTCATGTTCG 59.363 50.000 9.73 0.00 42.34 3.95
2939 3043 0.236711 CTTCAGCTCACAAACAGCGG 59.763 55.000 0.00 0.00 42.14 5.52
3122 3226 3.060602 GACTGCTGGTGTTGAAGTAGAC 58.939 50.000 0.00 0.00 31.37 2.59
3313 3417 2.673862 CTGACATGAGAAGAGCTGCTTG 59.326 50.000 2.53 0.00 36.83 4.01
3611 3715 4.478206 TCACTCATCTGTCCCATTTCTC 57.522 45.455 0.00 0.00 0.00 2.87
3618 3722 3.244215 TGACACTTTCACTCATCTGTCCC 60.244 47.826 0.00 0.00 0.00 4.46
3747 3851 1.202498 TCAATCTCTCGATGCAGCCTG 60.202 52.381 0.00 0.00 0.00 4.85
3785 3889 5.034852 TGACAAGTTCTCCAACTCATTCA 57.965 39.130 0.00 0.00 42.45 2.57
3823 3927 5.988310 TCGGTGTTTAGAAGTAAGATGGA 57.012 39.130 0.00 0.00 0.00 3.41
3865 3969 1.407258 CATCGAGGACTCCTGGTTCTC 59.593 57.143 0.93 0.00 44.96 2.87
3895 3999 5.752036 TGTGAGAGTTCAGATTCCAGATT 57.248 39.130 0.00 0.00 32.98 2.40
3935 4039 2.930682 GTTTCACCATCTAGGCTCGTTC 59.069 50.000 0.00 0.00 43.14 3.95
4063 4167 5.073144 TGTTCTCCACCTCACTTAATTTCCT 59.927 40.000 0.00 0.00 0.00 3.36
4125 4229 6.935240 TCACGGAGGATATGGATATCTTTT 57.065 37.500 2.05 0.00 39.24 2.27
4156 4260 9.709600 GTCTTTAATTATAAGCTCAGCAGAAAC 57.290 33.333 0.00 0.00 0.00 2.78
4176 4280 3.768757 CCAATTCCCAATGCAGGTCTTTA 59.231 43.478 0.00 0.00 0.00 1.85
4191 4295 3.769300 ACTCCTTTAATGCACCCAATTCC 59.231 43.478 0.00 0.00 0.00 3.01
4967 5072 4.744795 AAGGCACTCTCTGTAGTTATGG 57.255 45.455 0.00 0.00 38.49 2.74
4969 5074 6.769512 TGAAAAAGGCACTCTCTGTAGTTAT 58.230 36.000 0.00 0.00 38.49 1.89
5282 5387 2.055689 CTCTCCAAGGCCACCACACA 62.056 60.000 5.01 0.00 0.00 3.72
5317 5422 3.409026 AGAGCCACATTCTCGTCTTTT 57.591 42.857 0.00 0.00 35.79 2.27
5381 5486 7.220030 TCCTCCAGCTGTGATATTAAAATCTC 58.780 38.462 13.81 0.00 0.00 2.75
5486 5591 4.562757 CCTGTCGATGTTAAGGACCTTCAA 60.563 45.833 10.87 1.15 30.92 2.69
5789 5894 7.447238 ACTGTTATTTTGTAGCTCTTGCCTAAA 59.553 33.333 0.00 0.00 40.80 1.85
6088 6193 2.303890 ACTCAGCAACACCATCTCATCA 59.696 45.455 0.00 0.00 0.00 3.07
6099 6204 4.819630 CACCCTTAACTAAACTCAGCAACA 59.180 41.667 0.00 0.00 0.00 3.33
6150 6255 7.700505 TGATTCAAACAATATAGCTCTTGCAG 58.299 34.615 0.00 0.00 42.74 4.41
6416 6521 3.834231 ACTTTAGCACCTTCAATGGCAAT 59.166 39.130 0.00 0.00 0.00 3.56
6679 6784 5.488341 TCTAGTGCCATTTCTTTGTAGACC 58.512 41.667 0.00 0.00 0.00 3.85
6701 6806 3.067320 GCCTTGGCTTCCATCATAAACTC 59.933 47.826 4.11 0.00 31.53 3.01
6774 6879 1.135489 CAATATGGGCATCTCGCATGC 60.135 52.381 7.91 7.91 46.27 4.06
6841 6946 1.300971 TGCTCAGTTCGGCATTCAGC 61.301 55.000 0.00 0.00 44.65 4.26
7076 7185 5.602561 AGATGACATGCCACCATAGTAGTAA 59.397 40.000 0.00 0.00 0.00 2.24
7292 7401 2.159282 GCCAATCTTGTCCTCTTGCATG 60.159 50.000 0.00 0.00 0.00 4.06
7363 7472 3.372206 CCCAAGTGCTTCTATTCTTGACG 59.628 47.826 0.00 0.00 39.39 4.35
7529 7638 4.033776 CCTTTGGAGCCCTCGCCA 62.034 66.667 0.00 0.00 40.53 5.69
7532 7641 1.078143 CTTCCCTTTGGAGCCCTCG 60.078 63.158 0.00 0.00 43.07 4.63
7760 7869 0.824109 CCTCAACCGCCTCTATGTCA 59.176 55.000 0.00 0.00 0.00 3.58
7844 7953 1.131504 GCTGAAGACGACATCTCGAGT 59.868 52.381 13.13 0.00 43.06 4.18
7874 7983 3.355378 CACATTCTTGCCCCATAACTCA 58.645 45.455 0.00 0.00 0.00 3.41
7897 8006 1.733402 ATCAGAAGCGAGCCTCTCCG 61.733 60.000 0.00 0.00 0.00 4.63
8084 8193 0.460284 ACAGCGCAGGGTAATTCTCG 60.460 55.000 11.47 0.00 0.00 4.04
8104 8213 0.249447 CTCCGCGTTCATGCTATCCA 60.249 55.000 4.92 0.00 0.00 3.41
8349 8458 2.282040 ACAGCTGCAGAAGGGTGC 60.282 61.111 20.43 0.00 44.27 5.01
8351 8460 1.228063 CACACAGCTGCAGAAGGGT 60.228 57.895 20.43 13.22 0.00 4.34
8412 8523 1.202143 GGTTTCTTATTTCTGGCCGCG 60.202 52.381 0.00 0.00 0.00 6.46
8459 8573 9.892130 CTACAAGTATGGTTTCCTCTTTATCTT 57.108 33.333 0.00 0.00 0.00 2.40
8460 8574 9.047947 ACTACAAGTATGGTTTCCTCTTTATCT 57.952 33.333 0.00 0.00 0.00 1.98
8463 8577 8.755977 CCTACTACAAGTATGGTTTCCTCTTTA 58.244 37.037 0.00 0.00 29.08 1.85
8470 8584 5.041940 CGAGCCTACTACAAGTATGGTTTC 58.958 45.833 0.00 0.00 29.44 2.78
8491 8605 3.670625 CTCAATTACAAAGGGGACACGA 58.329 45.455 0.00 0.00 0.00 4.35
8555 8675 3.885297 ACTCACACCCACAGATGAAAAAG 59.115 43.478 0.00 0.00 0.00 2.27
8556 8676 3.897239 ACTCACACCCACAGATGAAAAA 58.103 40.909 0.00 0.00 0.00 1.94
8568 8688 8.880878 AAAATTAACACATTTTACTCACACCC 57.119 30.769 0.00 0.00 35.09 4.61
8620 8742 6.040391 TGCATACCAGGTAAATAAAATGCCTC 59.960 38.462 15.67 0.00 38.11 4.70
8638 8760 2.158769 TGTCACCCAGATGATGCATACC 60.159 50.000 0.00 0.00 0.00 2.73
8686 8854 0.586319 CTTTGCGCTCTTGGTTTCGA 59.414 50.000 9.73 0.00 0.00 3.71
8787 8955 4.719369 GTGAAGCGCCTCCGTCGT 62.719 66.667 2.29 0.00 36.67 4.34
8818 8986 7.255070 GCCTTAGATAAAGAATGAAGCAAGAGG 60.255 40.741 0.00 0.00 37.38 3.69
8819 8987 7.255070 GGCCTTAGATAAAGAATGAAGCAAGAG 60.255 40.741 0.00 0.00 37.38 2.85
8821 8989 6.512415 CGGCCTTAGATAAAGAATGAAGCAAG 60.512 42.308 0.00 0.00 37.38 4.01
8822 8990 5.296780 CGGCCTTAGATAAAGAATGAAGCAA 59.703 40.000 0.00 0.00 37.38 3.91
8823 8991 4.816385 CGGCCTTAGATAAAGAATGAAGCA 59.184 41.667 0.00 0.00 37.38 3.91
8824 8992 4.816925 ACGGCCTTAGATAAAGAATGAAGC 59.183 41.667 0.00 0.00 37.38 3.86
8826 8994 5.104693 TCCACGGCCTTAGATAAAGAATGAA 60.105 40.000 0.00 0.00 37.38 2.57
8828 8996 4.703897 TCCACGGCCTTAGATAAAGAATG 58.296 43.478 0.00 0.00 37.38 2.67
8829 8997 5.308825 CATCCACGGCCTTAGATAAAGAAT 58.691 41.667 0.00 0.00 37.38 2.40
8830 8998 4.703897 CATCCACGGCCTTAGATAAAGAA 58.296 43.478 0.00 0.00 37.38 2.52
8831 8999 3.494398 GCATCCACGGCCTTAGATAAAGA 60.494 47.826 0.00 0.00 37.38 2.52
8833 9001 2.805295 CGCATCCACGGCCTTAGATAAA 60.805 50.000 0.00 0.00 0.00 1.40
8835 9003 0.317160 CGCATCCACGGCCTTAGATA 59.683 55.000 0.00 0.00 0.00 1.98
8836 9004 1.069765 CGCATCCACGGCCTTAGAT 59.930 57.895 0.00 0.00 0.00 1.98
8837 9005 2.499205 CGCATCCACGGCCTTAGA 59.501 61.111 0.00 0.00 0.00 2.10
8838 9006 3.272334 GCGCATCCACGGCCTTAG 61.272 66.667 0.30 0.00 0.00 2.18
8839 9007 3.613877 TTGCGCATCCACGGCCTTA 62.614 57.895 12.75 0.00 0.00 2.69
8845 9013 3.869272 GAGCCTTGCGCATCCACG 61.869 66.667 12.75 0.00 41.38 4.94
8846 9014 2.747460 TGAGCCTTGCGCATCCAC 60.747 61.111 12.75 0.78 41.38 4.02
8847 9015 2.437180 CTGAGCCTTGCGCATCCA 60.437 61.111 12.75 4.21 37.76 3.41
8848 9016 3.207669 CCTGAGCCTTGCGCATCC 61.208 66.667 12.75 2.10 37.76 3.51
8849 9017 3.885521 GCCTGAGCCTTGCGCATC 61.886 66.667 12.75 6.31 37.76 3.91
8872 9040 2.369394 CAAGGTGGGGTAGAGAAATGC 58.631 52.381 0.00 0.00 0.00 3.56
8875 9043 1.628846 GAGCAAGGTGGGGTAGAGAAA 59.371 52.381 0.00 0.00 0.00 2.52
8905 9073 0.613260 CCCTTCCAGGATGACGACAA 59.387 55.000 3.79 0.00 39.69 3.18
8931 9099 4.384547 CGCAAACATCCACGATCGATTATA 59.615 41.667 24.34 2.43 0.00 0.98
8933 9101 2.538037 CGCAAACATCCACGATCGATTA 59.462 45.455 24.34 6.30 0.00 1.75
8934 9102 1.327460 CGCAAACATCCACGATCGATT 59.673 47.619 24.34 0.00 0.00 3.34
8935 9103 0.930310 CGCAAACATCCACGATCGAT 59.070 50.000 24.34 0.00 0.00 3.59
8936 9104 1.081556 CCGCAAACATCCACGATCGA 61.082 55.000 24.34 0.00 0.00 3.59
8943 11993 2.676121 CAGCCCCGCAAACATCCA 60.676 61.111 0.00 0.00 0.00 3.41
8946 11996 3.055719 CGTCAGCCCCGCAAACAT 61.056 61.111 0.00 0.00 0.00 2.71
8983 12033 0.392706 GAGGCAAACCCAAAACCTGG 59.607 55.000 0.00 0.00 45.97 4.45
8984 12034 0.392706 GGAGGCAAACCCAAAACCTG 59.607 55.000 0.00 0.00 36.11 4.00
8985 12035 1.112916 CGGAGGCAAACCCAAAACCT 61.113 55.000 0.00 0.00 36.11 3.50
8986 12036 1.365999 CGGAGGCAAACCCAAAACC 59.634 57.895 0.00 0.00 36.11 3.27
8987 12037 1.300620 GCGGAGGCAAACCCAAAAC 60.301 57.895 0.00 0.00 39.62 2.43
8988 12038 3.133946 GCGGAGGCAAACCCAAAA 58.866 55.556 0.00 0.00 39.62 2.44
9019 12069 2.286872 TCGATGAAGAGTAGTCCGGTC 58.713 52.381 0.00 0.00 0.00 4.79
9028 12078 1.686052 GATGGCTCCTCGATGAAGAGT 59.314 52.381 0.00 0.00 36.56 3.24
9076 12126 3.010200 AGGCCTTTATCTGCTTTGGAG 57.990 47.619 0.00 0.00 0.00 3.86
9077 12127 3.091545 CAAGGCCTTTATCTGCTTTGGA 58.908 45.455 17.61 0.00 39.90 3.53
9078 12128 2.417787 GCAAGGCCTTTATCTGCTTTGG 60.418 50.000 17.61 0.38 42.71 3.28
9079 12129 2.733227 CGCAAGGCCTTTATCTGCTTTG 60.733 50.000 17.61 1.71 44.55 2.77
9080 12130 1.474077 CGCAAGGCCTTTATCTGCTTT 59.526 47.619 17.61 0.00 0.00 3.51
9081 12131 1.098050 CGCAAGGCCTTTATCTGCTT 58.902 50.000 17.61 0.00 0.00 3.91
9082 12132 2.785868 CGCAAGGCCTTTATCTGCT 58.214 52.632 17.61 0.00 0.00 4.24
9101 12151 4.947147 TGCCGACAAGGGGTGCAC 62.947 66.667 8.80 8.80 41.48 4.57
9102 12152 4.947147 GTGCCGACAAGGGGTGCA 62.947 66.667 0.00 0.00 41.48 4.57
9128 12178 3.399181 GGTCCATGGCCGTCAGGA 61.399 66.667 6.96 0.00 41.02 3.86
9129 12179 3.402681 AGGTCCATGGCCGTCAGG 61.403 66.667 6.96 0.00 41.62 3.86
9130 12180 2.124983 CAGGTCCATGGCCGTCAG 60.125 66.667 6.96 1.83 0.00 3.51
9131 12181 4.408821 GCAGGTCCATGGCCGTCA 62.409 66.667 6.96 0.00 0.00 4.35
9135 12185 3.134127 GAACGCAGGTCCATGGCC 61.134 66.667 6.96 12.06 0.00 5.36
9136 12186 2.045926 AGAACGCAGGTCCATGGC 60.046 61.111 6.96 1.78 0.00 4.40
9137 12187 1.450312 GGAGAACGCAGGTCCATGG 60.450 63.158 4.97 4.97 0.00 3.66
9138 12188 0.742281 CTGGAGAACGCAGGTCCATG 60.742 60.000 0.00 0.00 39.66 3.66
9139 12189 1.194781 ACTGGAGAACGCAGGTCCAT 61.195 55.000 0.00 0.00 39.66 3.41
9140 12190 0.541063 TACTGGAGAACGCAGGTCCA 60.541 55.000 0.00 0.00 38.07 4.02
9141 12191 0.824759 ATACTGGAGAACGCAGGTCC 59.175 55.000 0.00 0.00 0.00 4.46
9142 12192 1.202428 GGATACTGGAGAACGCAGGTC 60.202 57.143 0.00 0.00 0.00 3.85
9143 12193 0.824759 GGATACTGGAGAACGCAGGT 59.175 55.000 0.00 0.00 0.00 4.00
9144 12194 0.824109 TGGATACTGGAGAACGCAGG 59.176 55.000 0.00 0.00 37.61 4.85
9145 12195 2.898729 ATGGATACTGGAGAACGCAG 57.101 50.000 0.00 0.00 37.61 5.18
9146 12196 2.035961 GCTATGGATACTGGAGAACGCA 59.964 50.000 0.00 0.00 37.61 5.24
9147 12197 2.035961 TGCTATGGATACTGGAGAACGC 59.964 50.000 0.00 0.00 37.61 4.84
9148 12198 4.240888 CATGCTATGGATACTGGAGAACG 58.759 47.826 0.00 0.00 37.61 3.95
9149 12199 3.999663 GCATGCTATGGATACTGGAGAAC 59.000 47.826 11.37 0.00 37.61 3.01
9150 12200 3.906218 AGCATGCTATGGATACTGGAGAA 59.094 43.478 21.21 0.00 37.61 2.87
9151 12201 3.514539 AGCATGCTATGGATACTGGAGA 58.485 45.455 21.21 0.00 37.61 3.71
9152 12202 3.977134 AGCATGCTATGGATACTGGAG 57.023 47.619 21.21 0.00 37.61 3.86
9153 12203 3.196469 GCTAGCATGCTATGGATACTGGA 59.804 47.826 27.03 2.98 37.61 3.86
9154 12204 3.529533 GCTAGCATGCTATGGATACTGG 58.470 50.000 27.03 13.28 37.61 4.00
9155 12205 3.185330 CGCTAGCATGCTATGGATACTG 58.815 50.000 27.03 13.97 37.61 2.74
9156 12206 2.828520 ACGCTAGCATGCTATGGATACT 59.171 45.455 27.03 1.42 37.61 2.12
9157 12207 3.182967 GACGCTAGCATGCTATGGATAC 58.817 50.000 27.03 12.91 0.00 2.24
9158 12208 2.166459 GGACGCTAGCATGCTATGGATA 59.834 50.000 27.03 6.65 0.00 2.59
9159 12209 1.066573 GGACGCTAGCATGCTATGGAT 60.067 52.381 27.03 13.35 0.00 3.41
9160 12210 0.318441 GGACGCTAGCATGCTATGGA 59.682 55.000 27.03 7.84 0.00 3.41
9161 12211 0.319728 AGGACGCTAGCATGCTATGG 59.680 55.000 27.03 22.10 0.00 2.74
9162 12212 1.271934 AGAGGACGCTAGCATGCTATG 59.728 52.381 27.03 22.93 0.00 2.23
9163 12213 1.626686 AGAGGACGCTAGCATGCTAT 58.373 50.000 27.03 13.39 0.00 2.97
9164 12214 1.880675 GTAGAGGACGCTAGCATGCTA 59.119 52.381 25.40 25.40 0.00 3.49
9165 12215 0.671251 GTAGAGGACGCTAGCATGCT 59.329 55.000 25.99 25.99 0.00 3.79
9166 12216 0.319125 GGTAGAGGACGCTAGCATGC 60.319 60.000 16.45 10.51 38.42 4.06
9167 12217 1.000827 CTGGTAGAGGACGCTAGCATG 60.001 57.143 16.45 1.28 44.85 4.06
9168 12218 1.323412 CTGGTAGAGGACGCTAGCAT 58.677 55.000 16.45 0.00 44.85 3.79
9169 12219 1.384989 GCTGGTAGAGGACGCTAGCA 61.385 60.000 16.45 12.95 44.07 3.49
9170 12220 1.360911 GCTGGTAGAGGACGCTAGC 59.639 63.158 4.06 4.06 38.88 3.42
9171 12221 1.000827 CATGCTGGTAGAGGACGCTAG 60.001 57.143 0.00 0.00 0.00 3.42
9172 12222 1.032794 CATGCTGGTAGAGGACGCTA 58.967 55.000 0.00 0.00 0.00 4.26
9173 12223 1.680522 CCATGCTGGTAGAGGACGCT 61.681 60.000 0.00 0.00 31.35 5.07
9174 12224 1.227380 CCATGCTGGTAGAGGACGC 60.227 63.158 0.00 0.00 31.35 5.19
9181 12231 7.429658 TATGTCCACATCACCATGCTGGTAG 62.430 48.000 7.41 4.51 42.34 3.18
9182 12232 5.670219 TATGTCCACATCACCATGCTGGTA 61.670 45.833 7.41 0.00 42.34 3.25
9183 12233 4.965660 TATGTCCACATCACCATGCTGGT 61.966 47.826 0.00 2.38 43.78 4.00
9184 12234 0.322726 TGTCCACATCACCATGCTGG 60.323 55.000 1.16 1.16 45.02 4.85
9185 12235 1.758936 ATGTCCACATCACCATGCTG 58.241 50.000 0.00 0.00 32.57 4.41
9186 12236 2.747467 GCTATGTCCACATCACCATGCT 60.747 50.000 0.00 0.00 37.76 3.79
9187 12237 1.605710 GCTATGTCCACATCACCATGC 59.394 52.381 0.00 0.00 37.76 4.06
9188 12238 3.204306 AGCTATGTCCACATCACCATG 57.796 47.619 0.00 0.00 37.76 3.66
9189 12239 4.594491 TGATAGCTATGTCCACATCACCAT 59.406 41.667 11.94 0.00 37.76 3.55
9190 12240 3.966665 TGATAGCTATGTCCACATCACCA 59.033 43.478 11.94 0.00 37.76 4.17
9191 12241 4.607293 TGATAGCTATGTCCACATCACC 57.393 45.455 11.94 0.00 37.76 4.02
9192 12242 8.607441 TTTTATGATAGCTATGTCCACATCAC 57.393 34.615 11.94 0.00 37.76 3.06
9193 12243 9.056005 GTTTTTATGATAGCTATGTCCACATCA 57.944 33.333 11.94 2.16 37.76 3.07
9194 12244 8.223769 CGTTTTTATGATAGCTATGTCCACATC 58.776 37.037 11.94 0.00 37.76 3.06
9195 12245 7.715249 ACGTTTTTATGATAGCTATGTCCACAT 59.285 33.333 11.94 10.22 40.22 3.21
9196 12246 7.045416 ACGTTTTTATGATAGCTATGTCCACA 58.955 34.615 11.94 2.52 0.00 4.17
9197 12247 7.438459 AGACGTTTTTATGATAGCTATGTCCAC 59.562 37.037 11.94 0.00 0.00 4.02
9198 12248 7.497595 AGACGTTTTTATGATAGCTATGTCCA 58.502 34.615 11.94 3.33 0.00 4.02
9199 12249 7.948278 AGACGTTTTTATGATAGCTATGTCC 57.052 36.000 11.94 0.00 0.00 4.02
9253 12303 9.297586 TCATGTGTATGTAGAAACGAAAGTATC 57.702 33.333 0.00 0.00 38.37 2.24
9254 12304 9.817809 ATCATGTGTATGTAGAAACGAAAGTAT 57.182 29.630 0.00 0.00 38.37 2.12
9255 12305 9.647797 AATCATGTGTATGTAGAAACGAAAGTA 57.352 29.630 0.00 0.00 38.37 2.24
9256 12306 8.547967 AATCATGTGTATGTAGAAACGAAAGT 57.452 30.769 0.00 0.00 39.99 2.66
9260 12310 9.647797 AGTTAAATCATGTGTATGTAGAAACGA 57.352 29.630 0.00 0.00 35.73 3.85
9261 12311 9.689075 CAGTTAAATCATGTGTATGTAGAAACG 57.311 33.333 0.00 0.00 35.73 3.60
9264 12314 9.936759 TGTCAGTTAAATCATGTGTATGTAGAA 57.063 29.630 0.00 0.00 35.73 2.10
9267 12317 9.883142 TCATGTCAGTTAAATCATGTGTATGTA 57.117 29.630 4.99 0.00 38.78 2.29
9268 12318 8.791327 TCATGTCAGTTAAATCATGTGTATGT 57.209 30.769 4.99 0.00 38.78 2.29
9277 12327 9.346005 AGCATCATATTCATGTCAGTTAAATCA 57.654 29.630 0.00 0.00 33.57 2.57
9280 12330 8.764287 CGTAGCATCATATTCATGTCAGTTAAA 58.236 33.333 0.00 0.00 33.57 1.52
9281 12331 8.298030 CGTAGCATCATATTCATGTCAGTTAA 57.702 34.615 0.00 0.00 33.57 2.01
9282 12332 7.873739 CGTAGCATCATATTCATGTCAGTTA 57.126 36.000 0.00 0.00 33.57 2.24
9283 12333 6.775939 CGTAGCATCATATTCATGTCAGTT 57.224 37.500 0.00 0.00 33.57 3.16
9315 12365 9.689501 CCTTATTCCTGGGTACAAGTAAATAAA 57.310 33.333 0.00 0.00 0.00 1.40
9316 12366 8.276477 CCCTTATTCCTGGGTACAAGTAAATAA 58.724 37.037 0.00 4.47 38.65 1.40
9317 12367 7.628505 TCCCTTATTCCTGGGTACAAGTAAATA 59.371 37.037 0.00 0.00 43.74 1.40
9318 12368 6.449041 TCCCTTATTCCTGGGTACAAGTAAAT 59.551 38.462 0.00 0.00 43.74 1.40
9319 12369 5.791664 TCCCTTATTCCTGGGTACAAGTAAA 59.208 40.000 0.00 0.00 43.74 2.01
9320 12370 5.352264 TCCCTTATTCCTGGGTACAAGTAA 58.648 41.667 0.00 0.00 43.74 2.24
9321 12371 4.962839 TCCCTTATTCCTGGGTACAAGTA 58.037 43.478 0.00 0.00 43.74 2.24
9322 12372 3.810623 TCCCTTATTCCTGGGTACAAGT 58.189 45.455 0.00 0.00 43.74 3.16
9323 12373 4.855298 TTCCCTTATTCCTGGGTACAAG 57.145 45.455 0.00 0.00 43.74 3.16
9324 12374 4.791334 TGATTCCCTTATTCCTGGGTACAA 59.209 41.667 0.00 0.00 43.74 2.41
9325 12375 4.376223 TGATTCCCTTATTCCTGGGTACA 58.624 43.478 0.00 0.00 43.74 2.90
9326 12376 4.658901 TCTGATTCCCTTATTCCTGGGTAC 59.341 45.833 0.00 0.00 43.74 3.34
9327 12377 4.903149 TCTGATTCCCTTATTCCTGGGTA 58.097 43.478 0.00 0.00 43.74 3.69
9328 12378 3.747852 TCTGATTCCCTTATTCCTGGGT 58.252 45.455 0.00 0.00 43.74 4.51
9329 12379 4.796110 TTCTGATTCCCTTATTCCTGGG 57.204 45.455 0.00 0.00 44.66 4.45
9330 12380 6.835488 TGATTTTCTGATTCCCTTATTCCTGG 59.165 38.462 0.00 0.00 0.00 4.45
9331 12381 7.886629 TGATTTTCTGATTCCCTTATTCCTG 57.113 36.000 0.00 0.00 0.00 3.86
9332 12382 9.498039 AATTGATTTTCTGATTCCCTTATTCCT 57.502 29.630 0.00 0.00 0.00 3.36
9338 12388 9.948964 CCTTTTAATTGATTTTCTGATTCCCTT 57.051 29.630 0.00 0.00 0.00 3.95
9339 12389 8.542926 CCCTTTTAATTGATTTTCTGATTCCCT 58.457 33.333 0.00 0.00 0.00 4.20
9340 12390 8.539544 TCCCTTTTAATTGATTTTCTGATTCCC 58.460 33.333 0.00 0.00 0.00 3.97
9341 12391 9.591792 CTCCCTTTTAATTGATTTTCTGATTCC 57.408 33.333 0.00 0.00 0.00 3.01
9342 12392 9.091784 GCTCCCTTTTAATTGATTTTCTGATTC 57.908 33.333 0.00 0.00 0.00 2.52
9343 12393 8.596293 TGCTCCCTTTTAATTGATTTTCTGATT 58.404 29.630 0.00 0.00 0.00 2.57
9344 12394 8.137745 TGCTCCCTTTTAATTGATTTTCTGAT 57.862 30.769 0.00 0.00 0.00 2.90
9345 12395 7.537596 TGCTCCCTTTTAATTGATTTTCTGA 57.462 32.000 0.00 0.00 0.00 3.27
9346 12396 8.782339 ATTGCTCCCTTTTAATTGATTTTCTG 57.218 30.769 0.00 0.00 0.00 3.02
9347 12397 9.875691 GTATTGCTCCCTTTTAATTGATTTTCT 57.124 29.630 0.00 0.00 0.00 2.52
9348 12398 9.875691 AGTATTGCTCCCTTTTAATTGATTTTC 57.124 29.630 0.00 0.00 0.00 2.29
9349 12399 9.875691 GAGTATTGCTCCCTTTTAATTGATTTT 57.124 29.630 0.00 0.00 38.27 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.