Multiple sequence alignment - TraesCS1D01G134100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G134100 chr1D 100.000 5142 0 0 1 5142 165477748 165472607 0.000000e+00 9496.0
1 TraesCS1D01G134100 chr1D 93.369 377 24 1 374 750 112766763 112766388 1.620000e-154 556.0
2 TraesCS1D01G134100 chr1D 94.048 252 15 0 499 750 216126479 216126228 2.900000e-102 383.0
3 TraesCS1D01G134100 chr1A 97.397 2804 58 5 1612 4400 230471880 230469077 0.000000e+00 4759.0
4 TraesCS1D01G134100 chr1A 97.362 834 18 2 784 1616 230472773 230471943 0.000000e+00 1415.0
5 TraesCS1D01G134100 chr1A 93.113 726 42 3 4418 5142 230469093 230468375 0.000000e+00 1057.0
6 TraesCS1D01G134100 chr1B 97.044 2639 60 7 1775 4400 238675576 238672943 0.000000e+00 4425.0
7 TraesCS1D01G134100 chr1B 93.725 765 23 8 818 1566 238676329 238675574 0.000000e+00 1123.0
8 TraesCS1D01G134100 chr1B 94.487 526 20 3 4417 4941 238672961 238672444 0.000000e+00 802.0
9 TraesCS1D01G134100 chr6D 94.301 386 21 1 365 750 329897583 329897199 1.590000e-164 590.0
10 TraesCS1D01G134100 chr6D 89.119 193 20 1 4942 5133 90442328 90442520 6.650000e-59 239.0
11 TraesCS1D01G134100 chr5D 94.444 378 20 1 373 750 416002750 416003126 9.600000e-162 580.0
12 TraesCS1D01G134100 chr5D 86.634 202 25 2 4942 5142 518754411 518754611 6.700000e-54 222.0
13 TraesCS1D01G134100 chr7A 92.857 378 27 0 373 750 520875046 520874669 2.710000e-152 549.0
14 TraesCS1D01G134100 chr7A 91.053 380 23 2 371 750 707328800 707329168 2.140000e-138 503.0
15 TraesCS1D01G134100 chr7A 89.756 205 18 3 4940 5142 632515492 632515289 5.110000e-65 259.0
16 TraesCS1D01G134100 chr7A 87.817 197 23 1 4944 5139 563604971 563604775 4.000000e-56 230.0
17 TraesCS1D01G134100 chr5A 90.130 385 25 4 371 754 513720879 513720507 5.980000e-134 488.0
18 TraesCS1D01G134100 chr2D 94.841 252 13 0 499 750 8394799 8395050 1.340000e-105 394.0
19 TraesCS1D01G134100 chr2D 89.231 195 20 1 4949 5142 637016259 637016065 5.140000e-60 243.0
20 TraesCS1D01G134100 chr4D 93.651 252 16 0 499 750 374822614 374822363 1.350000e-100 377.0
21 TraesCS1D01G134100 chr4D 95.238 126 6 0 373 498 374825848 374825723 3.140000e-47 200.0
22 TraesCS1D01G134100 chr2A 93.254 252 17 0 499 750 273221791 273222042 6.290000e-99 372.0
23 TraesCS1D01G134100 chr3D 88.442 199 21 2 4945 5142 586569485 586569288 6.650000e-59 239.0
24 TraesCS1D01G134100 chr7D 86.667 195 25 1 4938 5132 626484925 626484732 1.120000e-51 215.0
25 TraesCS1D01G134100 chr7B 85.500 200 28 1 4944 5142 526231478 526231677 1.880000e-49 207.0
26 TraesCS1D01G134100 chr7B 73.653 334 45 25 36 336 610555268 610555591 7.090000e-14 89.8
27 TraesCS1D01G134100 chr3B 95.312 128 6 0 371 498 734163880 734163753 2.430000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G134100 chr1D 165472607 165477748 5141 True 9496.000000 9496 100.000000 1 5142 1 chr1D.!!$R2 5141
1 TraesCS1D01G134100 chr1A 230468375 230472773 4398 True 2410.333333 4759 95.957333 784 5142 3 chr1A.!!$R1 4358
2 TraesCS1D01G134100 chr1B 238672444 238676329 3885 True 2116.666667 4425 95.085333 818 4941 3 chr1B.!!$R1 4123
3 TraesCS1D01G134100 chr4D 374822363 374825848 3485 True 288.500000 377 94.444500 373 750 2 chr4D.!!$R1 377

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
591 592 0.031043 TCTTTTTCGCGAGGTCACGA 59.969 50.0 9.59 0.00 36.32 4.35 F
629 630 0.101040 TATTTCCACGCCTCGTACCG 59.899 55.0 0.00 0.00 38.32 4.02 F
672 673 0.105408 ACACGCCCTTTTACACGAGT 59.895 50.0 0.00 0.00 0.00 4.18 F
691 692 0.179032 TCGCTGGGAGCAGTTTTTCA 60.179 50.0 0.00 0.00 42.58 2.69 F
1806 2313 0.179097 GAAGGGGAGTTCTGCTAGCG 60.179 60.0 10.77 5.22 0.00 4.26 F
1928 2435 0.323302 TTTGTCGCCTATCTGTGCCA 59.677 50.0 0.00 0.00 0.00 4.92 F
3049 3778 0.107831 TACTTGGTGTCGCCTGCTTT 59.892 50.0 3.62 0.00 38.35 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 2621 0.823460 AGGCAAACAAACCTGTGGTG 59.177 50.000 0.00 0.00 35.34 4.17 R
2475 2982 3.251729 CCAATTGATGCATCCCTTCTACG 59.748 47.826 23.67 5.56 0.00 3.51 R
2657 3164 4.402155 AGAAAGCAAAGACATGGACAACAA 59.598 37.500 0.00 0.00 0.00 2.83 R
2917 3646 7.440556 CGATATTCTTCTGTGACCTGAATTGAT 59.559 37.037 0.00 0.00 0.00 2.57 R
3049 3778 5.476945 TGATGGATCTTACGCAGCTATAAGA 59.523 40.000 14.99 14.99 40.70 2.10 R
4087 5224 1.449601 CGATGGCGGGCAGTACTTT 60.450 57.895 10.83 0.00 0.00 2.66 R
5056 7230 0.377554 TTTAACGCCCACACAACACG 59.622 50.000 0.00 0.00 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.473640 TCGATGAATGTTTTTCAAAATCATTGA 57.526 25.926 19.44 13.74 36.67 2.57
71 72 9.597170 TCATTGAACATTTTTCAAAACTGATGA 57.403 25.926 7.19 3.47 41.16 2.92
74 75 8.195617 TGAACATTTTTCAAAACTGATGAACC 57.804 30.769 7.19 0.00 36.57 3.62
75 76 8.040132 TGAACATTTTTCAAAACTGATGAACCT 58.960 29.630 7.19 0.00 36.57 3.50
76 77 8.791327 AACATTTTTCAAAACTGATGAACCTT 57.209 26.923 7.19 0.00 36.57 3.50
77 78 8.791327 ACATTTTTCAAAACTGATGAACCTTT 57.209 26.923 7.19 0.00 36.57 3.11
78 79 8.882736 ACATTTTTCAAAACTGATGAACCTTTC 58.117 29.630 7.19 0.00 36.57 2.62
79 80 9.101655 CATTTTTCAAAACTGATGAACCTTTCT 57.898 29.630 0.00 0.00 36.57 2.52
80 81 8.702163 TTTTTCAAAACTGATGAACCTTTCTC 57.298 30.769 0.00 0.00 36.57 2.87
81 82 7.403312 TTTCAAAACTGATGAACCTTTCTCA 57.597 32.000 0.00 0.00 36.57 3.27
82 83 7.403312 TTCAAAACTGATGAACCTTTCTCAA 57.597 32.000 0.00 0.00 32.10 3.02
83 84 7.403312 TCAAAACTGATGAACCTTTCTCAAA 57.597 32.000 0.00 0.00 0.00 2.69
84 85 8.010733 TCAAAACTGATGAACCTTTCTCAAAT 57.989 30.769 0.00 0.00 0.00 2.32
85 86 8.477256 TCAAAACTGATGAACCTTTCTCAAATT 58.523 29.630 0.00 0.00 0.00 1.82
86 87 8.758715 CAAAACTGATGAACCTTTCTCAAATTC 58.241 33.333 0.00 0.00 0.00 2.17
87 88 6.246420 ACTGATGAACCTTTCTCAAATTCG 57.754 37.500 0.00 0.00 0.00 3.34
88 89 5.997746 ACTGATGAACCTTTCTCAAATTCGA 59.002 36.000 0.00 0.00 0.00 3.71
89 90 6.656693 ACTGATGAACCTTTCTCAAATTCGAT 59.343 34.615 0.00 0.00 0.00 3.59
90 91 6.845302 TGATGAACCTTTCTCAAATTCGATG 58.155 36.000 0.00 0.00 0.00 3.84
91 92 6.654582 TGATGAACCTTTCTCAAATTCGATGA 59.345 34.615 0.00 0.00 0.00 2.92
92 93 6.875948 TGAACCTTTCTCAAATTCGATGAA 57.124 33.333 0.00 0.00 0.00 2.57
93 94 7.270757 TGAACCTTTCTCAAATTCGATGAAA 57.729 32.000 0.00 0.00 0.00 2.69
94 95 7.362662 TGAACCTTTCTCAAATTCGATGAAAG 58.637 34.615 0.00 0.00 41.61 2.62
95 96 6.884280 ACCTTTCTCAAATTCGATGAAAGT 57.116 33.333 12.94 4.31 40.86 2.66
96 97 7.277174 ACCTTTCTCAAATTCGATGAAAGTT 57.723 32.000 12.94 2.36 40.86 2.66
97 98 7.716612 ACCTTTCTCAAATTCGATGAAAGTTT 58.283 30.769 12.94 0.00 40.86 2.66
98 99 8.197439 ACCTTTCTCAAATTCGATGAAAGTTTT 58.803 29.630 12.94 1.56 40.86 2.43
99 100 9.034544 CCTTTCTCAAATTCGATGAAAGTTTTT 57.965 29.630 12.94 0.00 40.86 1.94
101 102 9.579768 TTTCTCAAATTCGATGAAAGTTTTTCA 57.420 25.926 6.69 6.69 0.00 2.69
102 103 9.579768 TTCTCAAATTCGATGAAAGTTTTTCAA 57.420 25.926 8.16 0.00 31.55 2.69
103 104 9.579768 TCTCAAATTCGATGAAAGTTTTTCAAA 57.420 25.926 8.16 0.17 31.55 2.69
159 160 9.985318 TTGCAAAATCTATGAACTTTTGTTTTG 57.015 25.926 0.00 0.00 43.66 2.44
160 161 9.376075 TGCAAAATCTATGAACTTTTGTTTTGA 57.624 25.926 10.38 0.00 43.66 2.69
241 242 8.669946 TTTTTCAGGTTTGTGAACTTTTTCTT 57.330 26.923 0.00 0.00 36.15 2.52
242 243 7.883229 TTTCAGGTTTGTGAACTTTTTCTTC 57.117 32.000 0.00 0.00 36.15 2.87
243 244 5.961272 TCAGGTTTGTGAACTTTTTCTTCC 58.039 37.500 0.00 0.00 36.03 3.46
244 245 5.478679 TCAGGTTTGTGAACTTTTTCTTCCA 59.521 36.000 0.00 0.00 36.03 3.53
245 246 6.015010 TCAGGTTTGTGAACTTTTTCTTCCAA 60.015 34.615 0.00 0.00 36.03 3.53
246 247 6.648725 CAGGTTTGTGAACTTTTTCTTCCAAA 59.351 34.615 0.00 0.00 36.03 3.28
247 248 7.334171 CAGGTTTGTGAACTTTTTCTTCCAAAT 59.666 33.333 0.00 0.00 36.03 2.32
248 249 7.334171 AGGTTTGTGAACTTTTTCTTCCAAATG 59.666 33.333 0.00 0.00 36.03 2.32
249 250 7.333174 GGTTTGTGAACTTTTTCTTCCAAATGA 59.667 33.333 0.00 0.00 36.03 2.57
250 251 8.716909 GTTTGTGAACTTTTTCTTCCAAATGAA 58.283 29.630 0.00 0.00 32.39 2.57
266 267 9.594478 TTCCAAATGAAGAACCTTTTTCTAAAC 57.406 29.630 0.00 0.00 0.00 2.01
267 268 8.201464 TCCAAATGAAGAACCTTTTTCTAAACC 58.799 33.333 0.00 0.00 0.00 3.27
268 269 7.984617 CCAAATGAAGAACCTTTTTCTAAACCA 59.015 33.333 0.00 0.00 0.00 3.67
269 270 9.546428 CAAATGAAGAACCTTTTTCTAAACCAT 57.454 29.630 0.00 0.00 0.00 3.55
270 271 9.546428 AAATGAAGAACCTTTTTCTAAACCATG 57.454 29.630 0.00 0.00 0.00 3.66
271 272 7.889873 TGAAGAACCTTTTTCTAAACCATGA 57.110 32.000 0.00 0.00 0.00 3.07
272 273 8.477419 TGAAGAACCTTTTTCTAAACCATGAT 57.523 30.769 0.00 0.00 0.00 2.45
273 274 8.576442 TGAAGAACCTTTTTCTAAACCATGATC 58.424 33.333 0.00 0.00 0.00 2.92
274 275 8.712228 AAGAACCTTTTTCTAAACCATGATCT 57.288 30.769 0.00 0.00 0.00 2.75
275 276 8.712228 AGAACCTTTTTCTAAACCATGATCTT 57.288 30.769 0.00 0.00 0.00 2.40
276 277 9.147732 AGAACCTTTTTCTAAACCATGATCTTT 57.852 29.630 0.00 0.00 0.00 2.52
277 278 9.764363 GAACCTTTTTCTAAACCATGATCTTTT 57.236 29.630 0.00 0.00 0.00 2.27
317 318 8.820831 AGATTAAGAGGTACAATAGATGGATGG 58.179 37.037 0.00 0.00 0.00 3.51
318 319 7.931015 TTAAGAGGTACAATAGATGGATGGT 57.069 36.000 0.00 0.00 0.00 3.55
319 320 6.831664 AAGAGGTACAATAGATGGATGGTT 57.168 37.500 0.00 0.00 0.00 3.67
320 321 6.426646 AGAGGTACAATAGATGGATGGTTC 57.573 41.667 0.00 0.00 0.00 3.62
321 322 6.146760 AGAGGTACAATAGATGGATGGTTCT 58.853 40.000 0.00 0.00 0.00 3.01
322 323 6.042552 AGAGGTACAATAGATGGATGGTTCTG 59.957 42.308 0.00 0.00 0.00 3.02
323 324 5.667626 AGGTACAATAGATGGATGGTTCTGT 59.332 40.000 0.00 0.00 0.00 3.41
324 325 5.760253 GGTACAATAGATGGATGGTTCTGTG 59.240 44.000 0.00 0.00 0.00 3.66
325 326 4.202441 ACAATAGATGGATGGTTCTGTGC 58.798 43.478 0.00 0.00 0.00 4.57
326 327 4.201657 CAATAGATGGATGGTTCTGTGCA 58.798 43.478 0.00 0.00 0.00 4.57
327 328 2.885135 AGATGGATGGTTCTGTGCAA 57.115 45.000 0.00 0.00 0.00 4.08
328 329 3.377253 AGATGGATGGTTCTGTGCAAT 57.623 42.857 0.00 0.00 0.00 3.56
329 330 4.508551 AGATGGATGGTTCTGTGCAATA 57.491 40.909 0.00 0.00 0.00 1.90
330 331 4.858850 AGATGGATGGTTCTGTGCAATAA 58.141 39.130 0.00 0.00 0.00 1.40
331 332 5.263599 AGATGGATGGTTCTGTGCAATAAA 58.736 37.500 0.00 0.00 0.00 1.40
332 333 5.359009 AGATGGATGGTTCTGTGCAATAAAG 59.641 40.000 0.00 0.00 0.00 1.85
333 334 4.406456 TGGATGGTTCTGTGCAATAAAGT 58.594 39.130 0.00 0.00 0.00 2.66
334 335 5.565509 TGGATGGTTCTGTGCAATAAAGTA 58.434 37.500 0.00 0.00 0.00 2.24
335 336 5.647658 TGGATGGTTCTGTGCAATAAAGTAG 59.352 40.000 0.00 0.00 0.00 2.57
336 337 5.449177 GGATGGTTCTGTGCAATAAAGTAGC 60.449 44.000 0.00 0.00 0.00 3.58
337 338 4.393834 TGGTTCTGTGCAATAAAGTAGCA 58.606 39.130 0.00 0.00 35.63 3.49
342 343 1.091537 TGCAATAAAGTAGCACCGCC 58.908 50.000 0.00 0.00 32.55 6.13
343 344 1.091537 GCAATAAAGTAGCACCGCCA 58.908 50.000 0.00 0.00 0.00 5.69
344 345 1.202143 GCAATAAAGTAGCACCGCCAC 60.202 52.381 0.00 0.00 0.00 5.01
345 346 1.400494 CAATAAAGTAGCACCGCCACC 59.600 52.381 0.00 0.00 0.00 4.61
346 347 0.107361 ATAAAGTAGCACCGCCACCC 60.107 55.000 0.00 0.00 0.00 4.61
347 348 1.196104 TAAAGTAGCACCGCCACCCT 61.196 55.000 0.00 0.00 0.00 4.34
348 349 2.748058 AAAGTAGCACCGCCACCCTG 62.748 60.000 0.00 0.00 0.00 4.45
349 350 4.016706 GTAGCACCGCCACCCTGT 62.017 66.667 0.00 0.00 0.00 4.00
350 351 3.246112 TAGCACCGCCACCCTGTT 61.246 61.111 0.00 0.00 0.00 3.16
351 352 1.914263 TAGCACCGCCACCCTGTTA 60.914 57.895 0.00 0.00 0.00 2.41
352 353 1.895020 TAGCACCGCCACCCTGTTAG 61.895 60.000 0.00 0.00 0.00 2.34
353 354 2.747686 CACCGCCACCCTGTTAGT 59.252 61.111 0.00 0.00 0.00 2.24
354 355 1.976898 CACCGCCACCCTGTTAGTA 59.023 57.895 0.00 0.00 0.00 1.82
355 356 0.539986 CACCGCCACCCTGTTAGTAT 59.460 55.000 0.00 0.00 0.00 2.12
356 357 0.539986 ACCGCCACCCTGTTAGTATG 59.460 55.000 0.00 0.00 0.00 2.39
357 358 0.814010 CCGCCACCCTGTTAGTATGC 60.814 60.000 0.00 0.00 0.00 3.14
358 359 0.178068 CGCCACCCTGTTAGTATGCT 59.822 55.000 0.00 0.00 0.00 3.79
359 360 1.806623 CGCCACCCTGTTAGTATGCTC 60.807 57.143 0.00 0.00 0.00 4.26
360 361 1.486726 GCCACCCTGTTAGTATGCTCT 59.513 52.381 0.00 0.00 0.00 4.09
361 362 2.092914 GCCACCCTGTTAGTATGCTCTT 60.093 50.000 0.00 0.00 0.00 2.85
362 363 3.535561 CCACCCTGTTAGTATGCTCTTG 58.464 50.000 0.00 0.00 0.00 3.02
363 364 2.939103 CACCCTGTTAGTATGCTCTTGC 59.061 50.000 0.00 0.00 40.20 4.01
364 365 2.092914 ACCCTGTTAGTATGCTCTTGCC 60.093 50.000 0.00 0.00 38.71 4.52
365 366 2.171448 CCCTGTTAGTATGCTCTTGCCT 59.829 50.000 0.00 0.00 38.71 4.75
366 367 3.370953 CCCTGTTAGTATGCTCTTGCCTT 60.371 47.826 0.00 0.00 38.71 4.35
367 368 4.265073 CCTGTTAGTATGCTCTTGCCTTT 58.735 43.478 0.00 0.00 38.71 3.11
368 369 4.095483 CCTGTTAGTATGCTCTTGCCTTTG 59.905 45.833 0.00 0.00 38.71 2.77
369 370 4.651778 TGTTAGTATGCTCTTGCCTTTGT 58.348 39.130 0.00 0.00 38.71 2.83
370 371 5.070001 TGTTAGTATGCTCTTGCCTTTGTT 58.930 37.500 0.00 0.00 38.71 2.83
371 372 6.234920 TGTTAGTATGCTCTTGCCTTTGTTA 58.765 36.000 0.00 0.00 38.71 2.41
458 459 5.546621 TCTTGCTAAATTATACGCCTCCT 57.453 39.130 0.00 0.00 0.00 3.69
488 489 6.045072 TCAGTGGAACGTGTAAATTAGGAT 57.955 37.500 0.00 0.00 45.86 3.24
506 507 7.862741 TTAGGATGTGTATATTAGAAACGCG 57.137 36.000 3.53 3.53 0.00 6.01
508 509 5.919141 AGGATGTGTATATTAGAAACGCGAC 59.081 40.000 15.93 3.56 0.00 5.19
509 510 5.164215 GGATGTGTATATTAGAAACGCGACG 60.164 44.000 15.93 0.00 0.00 5.12
510 511 4.037021 TGTGTATATTAGAAACGCGACGG 58.963 43.478 15.93 0.00 0.00 4.79
512 513 4.037021 TGTATATTAGAAACGCGACGGTG 58.963 43.478 15.93 0.00 0.00 4.94
513 514 2.917701 TATTAGAAACGCGACGGTGA 57.082 45.000 15.93 0.00 0.00 4.02
515 516 0.664166 TTAGAAACGCGACGGTGACC 60.664 55.000 15.93 0.00 0.00 4.02
516 517 1.518056 TAGAAACGCGACGGTGACCT 61.518 55.000 15.93 0.44 0.00 3.85
517 518 2.654912 GAAACGCGACGGTGACCTG 61.655 63.158 15.93 0.00 0.00 4.00
518 519 4.657824 AACGCGACGGTGACCTGG 62.658 66.667 15.93 0.00 0.00 4.45
537 538 3.984749 GGCGAGCTCCTCCGATCC 61.985 72.222 8.47 0.00 0.00 3.36
538 539 2.909965 GCGAGCTCCTCCGATCCT 60.910 66.667 8.47 0.00 0.00 3.24
539 540 2.494530 GCGAGCTCCTCCGATCCTT 61.495 63.158 8.47 0.00 0.00 3.36
540 541 1.657556 CGAGCTCCTCCGATCCTTC 59.342 63.158 8.47 0.00 0.00 3.46
541 542 1.801309 CGAGCTCCTCCGATCCTTCC 61.801 65.000 8.47 0.00 0.00 3.46
542 543 0.469144 GAGCTCCTCCGATCCTTCCT 60.469 60.000 0.87 0.00 0.00 3.36
543 544 0.031616 AGCTCCTCCGATCCTTCCTT 60.032 55.000 0.00 0.00 0.00 3.36
544 545 0.391228 GCTCCTCCGATCCTTCCTTC 59.609 60.000 0.00 0.00 0.00 3.46
545 546 0.671251 CTCCTCCGATCCTTCCTTCG 59.329 60.000 0.00 0.00 35.19 3.79
549 550 2.279517 CGATCCTTCCTTCGGGCG 60.280 66.667 0.00 0.00 34.44 6.13
550 551 2.109181 GATCCTTCCTTCGGGCGG 59.891 66.667 0.00 0.00 34.44 6.13
551 552 3.462199 GATCCTTCCTTCGGGCGGG 62.462 68.421 0.00 0.00 34.44 6.13
572 573 4.070552 GGGACGAAGCAGCGGTCT 62.071 66.667 12.19 0.00 35.12 3.85
573 574 2.507324 GGACGAAGCAGCGGTCTC 60.507 66.667 12.19 3.47 35.12 3.36
574 575 2.569134 GACGAAGCAGCGGTCTCT 59.431 61.111 6.95 0.00 35.12 3.10
575 576 1.080434 GACGAAGCAGCGGTCTCTT 60.080 57.895 6.95 0.00 35.12 2.85
576 577 0.667792 GACGAAGCAGCGGTCTCTTT 60.668 55.000 6.95 0.00 35.12 2.52
577 578 0.249911 ACGAAGCAGCGGTCTCTTTT 60.250 50.000 0.00 0.00 35.12 2.27
578 579 0.868406 CGAAGCAGCGGTCTCTTTTT 59.132 50.000 0.92 0.00 0.00 1.94
579 580 1.136224 CGAAGCAGCGGTCTCTTTTTC 60.136 52.381 0.92 0.00 0.00 2.29
580 581 0.868406 AAGCAGCGGTCTCTTTTTCG 59.132 50.000 0.00 0.00 0.00 3.46
583 584 3.545911 GCGGTCTCTTTTTCGCGA 58.454 55.556 3.71 3.71 38.82 5.87
584 585 1.416434 GCGGTCTCTTTTTCGCGAG 59.584 57.895 9.59 0.00 38.82 5.03
585 586 1.956620 GCGGTCTCTTTTTCGCGAGG 61.957 60.000 9.59 1.38 38.82 4.63
586 587 0.666577 CGGTCTCTTTTTCGCGAGGT 60.667 55.000 9.59 0.00 0.00 3.85
587 588 1.069255 GGTCTCTTTTTCGCGAGGTC 58.931 55.000 9.59 0.00 0.00 3.85
588 589 1.604693 GGTCTCTTTTTCGCGAGGTCA 60.605 52.381 9.59 0.00 0.00 4.02
589 590 1.456165 GTCTCTTTTTCGCGAGGTCAC 59.544 52.381 9.59 0.00 0.00 3.67
590 591 0.435008 CTCTTTTTCGCGAGGTCACG 59.565 55.000 9.59 0.00 0.00 4.35
591 592 0.031043 TCTTTTTCGCGAGGTCACGA 59.969 50.000 9.59 0.00 36.32 4.35
592 593 0.435008 CTTTTTCGCGAGGTCACGAG 59.565 55.000 9.59 0.00 39.81 4.18
593 594 1.554042 TTTTTCGCGAGGTCACGAGC 61.554 55.000 9.59 0.00 39.81 5.03
602 603 4.077188 GTCACGAGCGTGGCTTGC 62.077 66.667 19.10 4.13 46.17 4.01
603 604 4.299547 TCACGAGCGTGGCTTGCT 62.300 61.111 21.14 3.72 43.36 3.91
618 619 3.002348 GGCTTGCTCGTGTATATTTCCAC 59.998 47.826 0.00 0.00 0.00 4.02
624 625 1.784856 CGTGTATATTTCCACGCCTCG 59.215 52.381 8.63 0.00 46.45 4.63
627 628 3.732721 GTGTATATTTCCACGCCTCGTAC 59.267 47.826 0.00 0.00 38.32 3.67
628 629 2.521105 ATATTTCCACGCCTCGTACC 57.479 50.000 0.00 0.00 38.32 3.34
629 630 0.101040 TATTTCCACGCCTCGTACCG 59.899 55.000 0.00 0.00 38.32 4.02
631 632 2.476534 TTTCCACGCCTCGTACCGTC 62.477 60.000 0.00 0.00 38.32 4.79
633 634 4.093952 CACGCCTCGTACCGTCGT 62.094 66.667 0.00 0.00 38.32 4.34
634 635 4.093952 ACGCCTCGTACCGTCGTG 62.094 66.667 0.00 0.00 38.73 4.35
635 636 4.824166 CGCCTCGTACCGTCGTGG 62.824 72.222 8.05 8.05 44.11 4.94
637 638 4.487412 CCTCGTACCGTCGTGGCC 62.487 72.222 0.00 0.00 43.94 5.36
639 640 3.678717 CTCGTACCGTCGTGGCCTG 62.679 68.421 3.32 0.00 43.94 4.85
640 641 4.789075 CGTACCGTCGTGGCCTGG 62.789 72.222 3.32 0.19 43.94 4.45
641 642 4.446413 GTACCGTCGTGGCCTGGG 62.446 72.222 3.32 0.00 43.94 4.45
646 647 4.814294 GTCGTGGCCTGGGCGTAG 62.814 72.222 16.08 9.23 43.06 3.51
648 649 3.849951 CGTGGCCTGGGCGTAGAT 61.850 66.667 16.08 0.00 43.06 1.98
649 650 2.203070 GTGGCCTGGGCGTAGATG 60.203 66.667 16.08 0.00 43.06 2.90
650 651 2.687200 TGGCCTGGGCGTAGATGT 60.687 61.111 16.08 0.00 43.06 3.06
652 653 1.077716 GGCCTGGGCGTAGATGTTT 60.078 57.895 3.84 0.00 43.06 2.83
653 654 0.179468 GGCCTGGGCGTAGATGTTTA 59.821 55.000 3.84 0.00 43.06 2.01
657 658 1.924524 CTGGGCGTAGATGTTTACACG 59.075 52.381 0.00 0.00 37.45 4.49
661 662 2.288961 CGTAGATGTTTACACGCCCT 57.711 50.000 0.00 0.00 0.00 5.19
664 665 3.434299 CGTAGATGTTTACACGCCCTTTT 59.566 43.478 0.00 0.00 0.00 2.27
665 666 4.626604 CGTAGATGTTTACACGCCCTTTTA 59.373 41.667 0.00 0.00 0.00 1.52
666 667 5.445010 CGTAGATGTTTACACGCCCTTTTAC 60.445 44.000 0.00 0.00 0.00 2.01
667 668 4.391155 AGATGTTTACACGCCCTTTTACA 58.609 39.130 0.00 0.00 0.00 2.41
669 670 2.287373 TGTTTACACGCCCTTTTACACG 59.713 45.455 0.00 0.00 0.00 4.49
670 671 2.522836 TTACACGCCCTTTTACACGA 57.477 45.000 0.00 0.00 0.00 4.35
671 672 2.068837 TACACGCCCTTTTACACGAG 57.931 50.000 0.00 0.00 0.00 4.18
672 673 0.105408 ACACGCCCTTTTACACGAGT 59.895 50.000 0.00 0.00 0.00 4.18
673 674 0.788391 CACGCCCTTTTACACGAGTC 59.212 55.000 0.00 0.00 0.00 3.36
674 675 0.665369 ACGCCCTTTTACACGAGTCG 60.665 55.000 11.85 11.85 0.00 4.18
677 678 1.068474 CCCTTTTACACGAGTCGCTG 58.932 55.000 13.59 12.50 0.00 5.18
678 679 1.068474 CCTTTTACACGAGTCGCTGG 58.932 55.000 13.59 5.13 0.00 4.85
679 680 1.068474 CTTTTACACGAGTCGCTGGG 58.932 55.000 13.59 2.40 0.00 4.45
680 681 0.675083 TTTTACACGAGTCGCTGGGA 59.325 50.000 13.59 0.00 0.00 4.37
682 683 2.209064 TTACACGAGTCGCTGGGAGC 62.209 60.000 13.59 0.00 38.02 4.70
683 684 4.056125 CACGAGTCGCTGGGAGCA 62.056 66.667 13.59 0.00 42.58 4.26
684 685 3.753434 ACGAGTCGCTGGGAGCAG 61.753 66.667 13.59 0.00 42.58 4.24
685 686 3.753434 CGAGTCGCTGGGAGCAGT 61.753 66.667 0.00 0.00 42.58 4.40
688 689 0.603975 GAGTCGCTGGGAGCAGTTTT 60.604 55.000 0.00 0.00 42.58 2.43
691 692 0.179032 TCGCTGGGAGCAGTTTTTCA 60.179 50.000 0.00 0.00 42.58 2.69
692 693 0.239347 CGCTGGGAGCAGTTTTTCAG 59.761 55.000 0.00 0.00 42.58 3.02
695 696 1.959282 CTGGGAGCAGTTTTTCAGCTT 59.041 47.619 0.00 0.00 38.98 3.74
696 697 1.682854 TGGGAGCAGTTTTTCAGCTTG 59.317 47.619 0.00 0.00 38.98 4.01
698 699 1.067516 GGAGCAGTTTTTCAGCTTGCA 59.932 47.619 7.03 0.00 38.98 4.08
700 701 2.985139 GAGCAGTTTTTCAGCTTGCATC 59.015 45.455 7.03 0.00 38.98 3.91
701 702 2.363038 AGCAGTTTTTCAGCTTGCATCA 59.637 40.909 7.03 0.00 35.36 3.07
702 703 3.006537 AGCAGTTTTTCAGCTTGCATCAT 59.993 39.130 7.03 0.00 35.36 2.45
703 704 4.219070 AGCAGTTTTTCAGCTTGCATCATA 59.781 37.500 7.03 0.00 35.36 2.15
705 706 6.095860 AGCAGTTTTTCAGCTTGCATCATATA 59.904 34.615 7.03 0.00 35.36 0.86
706 707 6.921857 GCAGTTTTTCAGCTTGCATCATATAT 59.078 34.615 0.00 0.00 0.00 0.86
707 708 8.077991 GCAGTTTTTCAGCTTGCATCATATATA 58.922 33.333 0.00 0.00 0.00 0.86
713 714 7.933215 TCAGCTTGCATCATATATATTTGCT 57.067 32.000 20.29 9.10 34.47 3.91
714 715 9.452287 TTCAGCTTGCATCATATATATTTGCTA 57.548 29.630 20.29 15.01 34.47 3.49
721 722 9.816354 TGCATCATATATATTTGCTATACACGT 57.184 29.630 20.29 0.00 34.47 4.49
725 726 9.797556 TCATATATATTTGCTATACACGTCCAC 57.202 33.333 0.00 0.00 0.00 4.02
726 727 9.581099 CATATATATTTGCTATACACGTCCACA 57.419 33.333 0.00 0.00 0.00 4.17
729 730 9.803315 ATATATTTGCTATACACGTCCACATAG 57.197 33.333 0.00 0.00 0.00 2.23
734 735 5.476945 TGCTATACACGTCCACATAGATGAT 59.523 40.000 0.00 0.00 0.00 2.45
736 737 3.735237 ACACGTCCACATAGATGATCC 57.265 47.619 0.00 0.00 0.00 3.36
737 738 3.031013 ACACGTCCACATAGATGATCCA 58.969 45.455 0.00 0.00 0.00 3.41
738 739 3.181475 ACACGTCCACATAGATGATCCAC 60.181 47.826 0.00 0.00 0.00 4.02
740 741 4.278419 CACGTCCACATAGATGATCCACTA 59.722 45.833 0.00 0.00 0.00 2.74
741 742 4.520874 ACGTCCACATAGATGATCCACTAG 59.479 45.833 0.00 0.00 0.00 2.57
743 744 5.106357 CGTCCACATAGATGATCCACTAGAG 60.106 48.000 0.00 0.00 0.00 2.43
744 745 6.007076 GTCCACATAGATGATCCACTAGAGA 58.993 44.000 0.00 0.00 0.00 3.10
747 748 6.331845 CACATAGATGATCCACTAGAGATGC 58.668 44.000 0.00 0.00 0.00 3.91
748 749 6.153170 CACATAGATGATCCACTAGAGATGCT 59.847 42.308 0.00 0.00 0.00 3.79
749 750 6.377996 ACATAGATGATCCACTAGAGATGCTC 59.622 42.308 0.00 0.00 0.00 4.26
750 751 4.738685 AGATGATCCACTAGAGATGCTCA 58.261 43.478 0.00 0.00 32.06 4.26
753 754 6.952938 AGATGATCCACTAGAGATGCTCAATA 59.047 38.462 0.00 0.00 32.06 1.90
754 755 7.620491 AGATGATCCACTAGAGATGCTCAATAT 59.380 37.037 0.00 0.00 32.06 1.28
755 756 7.167924 TGATCCACTAGAGATGCTCAATATC 57.832 40.000 0.00 0.00 32.06 1.63
756 757 6.723052 TGATCCACTAGAGATGCTCAATATCA 59.277 38.462 0.00 0.00 32.06 2.15
757 758 6.587206 TCCACTAGAGATGCTCAATATCAG 57.413 41.667 0.00 0.00 32.06 2.90
765 766 1.674441 TGCTCAATATCAGCAAGCAGC 59.326 47.619 6.81 0.00 44.02 5.25
774 775 4.152625 GCAAGCAGCGCCGTACAG 62.153 66.667 2.29 0.00 0.00 2.74
776 777 3.691342 AAGCAGCGCCGTACAGGA 61.691 61.111 2.29 0.00 45.00 3.86
777 778 3.649277 AAGCAGCGCCGTACAGGAG 62.649 63.158 2.29 5.69 45.00 3.69
782 783 4.208686 CGCCGTACAGGAGCTCCC 62.209 72.222 29.54 12.87 45.00 4.30
812 820 1.701031 TTGTTCAGTTCCGCCAGGGA 61.701 55.000 0.00 0.00 45.40 4.20
941 950 1.874872 CGTCTCGTCTTATCCTCCTCC 59.125 57.143 0.00 0.00 0.00 4.30
942 951 2.485835 CGTCTCGTCTTATCCTCCTCCT 60.486 54.545 0.00 0.00 0.00 3.69
943 952 3.143728 GTCTCGTCTTATCCTCCTCCTC 58.856 54.545 0.00 0.00 0.00 3.71
1675 2182 4.206477 TCGCTTCTGAATCTTCCATTGA 57.794 40.909 0.00 0.00 0.00 2.57
1715 2222 3.923461 CCTGTCTCGTGATTGTTCTCTTC 59.077 47.826 0.00 0.00 0.00 2.87
1757 2264 6.372659 TGAGTCTGTTCTTATTGCAGAAATCC 59.627 38.462 0.00 0.00 40.40 3.01
1806 2313 0.179097 GAAGGGGAGTTCTGCTAGCG 60.179 60.000 10.77 5.22 0.00 4.26
1918 2425 2.039084 AGAAGGAGAATGTTTGTCGCCT 59.961 45.455 0.00 0.00 46.03 5.52
1928 2435 0.323302 TTTGTCGCCTATCTGTGCCA 59.677 50.000 0.00 0.00 0.00 4.92
2061 2568 0.887836 TGCAGCTTCTTCAGTGGCAG 60.888 55.000 0.00 0.00 32.16 4.85
2114 2621 5.364157 ACTTCCTGTATCTGACAATAGGGAC 59.636 44.000 5.25 0.00 37.70 4.46
2252 2759 3.062122 TGTCCTACCCCAATCGAAAAC 57.938 47.619 0.00 0.00 0.00 2.43
2307 2814 6.126863 AGGATCCAGAATTGTGTTCAACTA 57.873 37.500 15.82 0.00 36.33 2.24
2475 2982 2.287915 ACAAGATGTCACTTCGTTGTGC 59.712 45.455 7.34 3.19 37.81 4.57
2503 3010 2.037144 GGATGCATCAATTGGGAGCTT 58.963 47.619 27.25 5.79 0.00 3.74
2520 3027 6.725834 TGGGAGCTTGGAATAGAAGAATTTTT 59.274 34.615 0.00 0.00 0.00 1.94
2573 3080 8.391106 ACATAGCTTTTCAATATTGTCGTCTTC 58.609 33.333 14.97 1.21 0.00 2.87
2657 3164 2.628178 CAATGCATTGCTCCATCATCCT 59.372 45.455 25.50 0.00 0.00 3.24
2917 3646 3.645434 TCTAATCGGTTACCTGCCCTAA 58.355 45.455 0.00 0.00 0.00 2.69
3049 3778 0.107831 TACTTGGTGTCGCCTGCTTT 59.892 50.000 3.62 0.00 38.35 3.51
3073 3802 5.476945 TCTTATAGCTGCGTAAGATCCATCA 59.523 40.000 19.52 3.98 43.02 3.07
3266 3997 6.912591 GCCGATTGACTTTCCTTTACATATTG 59.087 38.462 0.00 0.00 0.00 1.90
3369 4101 1.827344 TGAGATGACTGCACCTACAGG 59.173 52.381 0.00 0.00 42.21 4.00
4087 5224 4.216687 CCCCAGTACAAATTTGTAGCGAAA 59.783 41.667 27.29 8.08 43.67 3.46
4115 5252 2.203056 CGCCATCGATTCCAGCCA 60.203 61.111 0.00 0.00 38.10 4.75
4153 5290 4.938226 GCTAGCAGTTAGAACTTGGAACAT 59.062 41.667 10.63 0.00 39.30 2.71
4179 5316 4.188247 TCAGGTTCGGTTACTCATTCAG 57.812 45.455 0.00 0.00 0.00 3.02
4350 5493 1.466360 GCAATGTTCGTGATGCTGTCC 60.466 52.381 0.00 0.00 35.93 4.02
4389 5532 3.770263 TTAAATGCTTAGCTGCTGCAG 57.230 42.857 24.80 24.80 42.74 4.41
4390 5533 1.542492 AAATGCTTAGCTGCTGCAGT 58.458 45.000 28.50 18.09 42.74 4.40
4391 5534 1.093159 AATGCTTAGCTGCTGCAGTC 58.907 50.000 28.50 20.58 42.74 3.51
4392 5535 0.252479 ATGCTTAGCTGCTGCAGTCT 59.748 50.000 28.50 25.44 42.74 3.24
4393 5536 0.672711 TGCTTAGCTGCTGCAGTCTG 60.673 55.000 28.50 17.45 42.74 3.51
4394 5537 0.673022 GCTTAGCTGCTGCAGTCTGT 60.673 55.000 28.50 14.56 42.74 3.41
4395 5538 1.805869 CTTAGCTGCTGCAGTCTGTT 58.194 50.000 28.50 11.67 42.74 3.16
4396 5539 2.149578 CTTAGCTGCTGCAGTCTGTTT 58.850 47.619 28.50 11.51 42.74 2.83
4397 5540 1.800805 TAGCTGCTGCAGTCTGTTTC 58.199 50.000 28.50 11.69 42.74 2.78
4398 5541 0.108207 AGCTGCTGCAGTCTGTTTCT 59.892 50.000 28.50 13.71 42.74 2.52
4399 5542 0.950116 GCTGCTGCAGTCTGTTTCTT 59.050 50.000 28.50 0.00 39.41 2.52
4400 5543 1.336125 GCTGCTGCAGTCTGTTTCTTT 59.664 47.619 28.50 0.00 39.41 2.52
4401 5544 2.223665 GCTGCTGCAGTCTGTTTCTTTT 60.224 45.455 28.50 0.00 39.41 2.27
4402 5545 3.736126 GCTGCTGCAGTCTGTTTCTTTTT 60.736 43.478 28.50 0.00 39.41 1.94
4472 5615 7.157347 ACGTTATAGTCCAGTCATATCTCGTA 58.843 38.462 0.00 0.00 0.00 3.43
4479 5622 5.530171 GTCCAGTCATATCTCGTAACACCTA 59.470 44.000 0.00 0.00 0.00 3.08
4580 5723 3.248602 GCATTCTAGCGGTGGTTATTCTG 59.751 47.826 0.00 0.00 0.00 3.02
4627 5823 4.423732 ACACAACAGTCTGAATGCAAAAC 58.576 39.130 6.91 0.00 0.00 2.43
4682 6855 8.043113 AGACAGCAACTTGTAAATCATCTATCA 58.957 33.333 0.00 0.00 0.00 2.15
4875 7048 5.542635 TGTGTTCCTATAACTGGTCTCACTT 59.457 40.000 0.00 0.00 0.00 3.16
4896 7070 8.822805 TCACTTACAAAAATAGTATGGGAGTCT 58.177 33.333 0.00 0.00 29.16 3.24
4947 7121 3.572682 ACCGAGGATTTCTTTTCCCAAAC 59.427 43.478 0.00 0.00 33.45 2.93
4955 7129 6.584942 GGATTTCTTTTCCCAAACGATAACAC 59.415 38.462 0.00 0.00 0.00 3.32
4964 7138 3.058450 CAAACGATAACACCCACACGTA 58.942 45.455 0.00 0.00 33.76 3.57
4990 7164 2.198906 ATTTGCACATCGCCCACACG 62.199 55.000 0.00 0.00 41.33 4.49
4999 7173 2.045926 GCCCACACGCCTTGATCT 60.046 61.111 0.00 0.00 0.00 2.75
5009 7183 4.161565 ACACGCCTTGATCTACCTTGATTA 59.838 41.667 0.00 0.00 0.00 1.75
5019 7193 8.523915 TGATCTACCTTGATTATGTTTTGCAT 57.476 30.769 0.00 0.00 41.42 3.96
5024 7198 9.590451 CTACCTTGATTATGTTTTGCATGAATT 57.410 29.630 0.00 0.00 38.47 2.17
5027 7201 9.158233 CCTTGATTATGTTTTGCATGAATTCTT 57.842 29.630 7.05 0.00 38.47 2.52
5074 7248 2.015382 CGTGTTGTGTGGGCGTTAA 58.985 52.632 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.473640 TCAATGATTTTGAAAAACATTCATCGA 57.526 25.926 19.08 12.62 32.54 3.59
45 46 9.597170 TCATCAGTTTTGAAAAATGTTCAATGA 57.403 25.926 16.28 14.35 38.12 2.57
48 49 8.663911 GGTTCATCAGTTTTGAAAAATGTTCAA 58.336 29.630 16.28 0.27 36.78 2.69
49 50 8.040132 AGGTTCATCAGTTTTGAAAAATGTTCA 58.960 29.630 16.28 0.00 36.78 3.18
50 51 8.424274 AGGTTCATCAGTTTTGAAAAATGTTC 57.576 30.769 16.28 5.51 36.78 3.18
51 52 8.791327 AAGGTTCATCAGTTTTGAAAAATGTT 57.209 26.923 16.28 6.89 36.78 2.71
52 53 8.791327 AAAGGTTCATCAGTTTTGAAAAATGT 57.209 26.923 16.28 3.33 36.78 2.71
53 54 9.101655 AGAAAGGTTCATCAGTTTTGAAAAATG 57.898 29.630 11.45 11.45 36.78 2.32
54 55 9.317936 GAGAAAGGTTCATCAGTTTTGAAAAAT 57.682 29.630 0.00 0.00 36.78 1.82
55 56 8.310382 TGAGAAAGGTTCATCAGTTTTGAAAAA 58.690 29.630 0.00 0.00 36.78 1.94
56 57 7.835822 TGAGAAAGGTTCATCAGTTTTGAAAA 58.164 30.769 0.00 0.00 36.78 2.29
57 58 7.403312 TGAGAAAGGTTCATCAGTTTTGAAA 57.597 32.000 0.00 0.00 36.78 2.69
58 59 7.403312 TTGAGAAAGGTTCATCAGTTTTGAA 57.597 32.000 0.00 0.00 36.78 2.69
59 60 7.403312 TTTGAGAAAGGTTCATCAGTTTTGA 57.597 32.000 0.00 0.00 37.81 2.69
60 61 8.652810 AATTTGAGAAAGGTTCATCAGTTTTG 57.347 30.769 0.00 0.00 0.00 2.44
61 62 7.649306 CGAATTTGAGAAAGGTTCATCAGTTTT 59.351 33.333 0.00 0.00 0.00 2.43
62 63 7.013274 TCGAATTTGAGAAAGGTTCATCAGTTT 59.987 33.333 0.00 0.00 0.00 2.66
63 64 6.486657 TCGAATTTGAGAAAGGTTCATCAGTT 59.513 34.615 0.00 0.00 0.00 3.16
64 65 5.997746 TCGAATTTGAGAAAGGTTCATCAGT 59.002 36.000 0.00 0.00 0.00 3.41
65 66 6.486253 TCGAATTTGAGAAAGGTTCATCAG 57.514 37.500 0.00 0.00 0.00 2.90
66 67 6.654582 TCATCGAATTTGAGAAAGGTTCATCA 59.345 34.615 1.10 0.00 0.00 3.07
67 68 7.076842 TCATCGAATTTGAGAAAGGTTCATC 57.923 36.000 1.10 0.00 0.00 2.92
68 69 7.452880 TTCATCGAATTTGAGAAAGGTTCAT 57.547 32.000 1.10 0.00 0.00 2.57
69 70 6.875948 TTCATCGAATTTGAGAAAGGTTCA 57.124 33.333 1.10 0.00 0.00 3.18
70 71 7.363431 ACTTTCATCGAATTTGAGAAAGGTTC 58.637 34.615 28.49 0.50 45.68 3.62
71 72 7.277174 ACTTTCATCGAATTTGAGAAAGGTT 57.723 32.000 28.49 17.88 45.68 3.50
72 73 6.884280 ACTTTCATCGAATTTGAGAAAGGT 57.116 33.333 28.49 18.31 45.68 3.50
73 74 8.579682 AAAACTTTCATCGAATTTGAGAAAGG 57.420 30.769 28.49 17.90 45.68 3.11
75 76 9.579768 TGAAAAACTTTCATCGAATTTGAGAAA 57.420 25.926 14.44 14.44 0.00 2.52
76 77 9.579768 TTGAAAAACTTTCATCGAATTTGAGAA 57.420 25.926 1.10 3.11 0.00 2.87
77 78 9.579768 TTTGAAAAACTTTCATCGAATTTGAGA 57.420 25.926 1.10 0.00 0.00 3.27
133 134 9.985318 CAAAACAAAAGTTCATAGATTTTGCAA 57.015 25.926 0.00 0.00 44.10 4.08
134 135 9.376075 TCAAAACAAAAGTTCATAGATTTTGCA 57.624 25.926 8.98 0.00 44.10 4.08
216 217 8.669946 AAGAAAAAGTTCACAAACCTGAAAAA 57.330 26.923 0.00 0.00 36.09 1.94
217 218 7.386573 GGAAGAAAAAGTTCACAAACCTGAAAA 59.613 33.333 0.00 0.00 36.09 2.29
218 219 6.871492 GGAAGAAAAAGTTCACAAACCTGAAA 59.129 34.615 0.00 0.00 36.09 2.69
219 220 6.015010 TGGAAGAAAAAGTTCACAAACCTGAA 60.015 34.615 0.00 0.00 36.09 3.02
220 221 5.478679 TGGAAGAAAAAGTTCACAAACCTGA 59.521 36.000 0.00 0.00 36.09 3.86
221 222 5.719173 TGGAAGAAAAAGTTCACAAACCTG 58.281 37.500 0.00 0.00 36.09 4.00
222 223 5.993748 TGGAAGAAAAAGTTCACAAACCT 57.006 34.783 0.00 0.00 36.09 3.50
223 224 7.333174 TCATTTGGAAGAAAAAGTTCACAAACC 59.667 33.333 0.00 0.00 37.16 3.27
224 225 8.250538 TCATTTGGAAGAAAAAGTTCACAAAC 57.749 30.769 0.00 0.00 37.16 2.93
225 226 8.839310 TTCATTTGGAAGAAAAAGTTCACAAA 57.161 26.923 0.00 0.00 37.92 2.83
240 241 9.594478 GTTTAGAAAAAGGTTCTTCATTTGGAA 57.406 29.630 0.00 0.00 30.26 3.53
241 242 8.201464 GGTTTAGAAAAAGGTTCTTCATTTGGA 58.799 33.333 0.00 0.00 30.26 3.53
242 243 7.984617 TGGTTTAGAAAAAGGTTCTTCATTTGG 59.015 33.333 0.00 0.00 30.26 3.28
243 244 8.940768 TGGTTTAGAAAAAGGTTCTTCATTTG 57.059 30.769 0.00 0.00 30.26 2.32
244 245 9.546428 CATGGTTTAGAAAAAGGTTCTTCATTT 57.454 29.630 0.00 0.00 0.00 2.32
245 246 8.923270 TCATGGTTTAGAAAAAGGTTCTTCATT 58.077 29.630 0.00 0.00 0.00 2.57
246 247 8.477419 TCATGGTTTAGAAAAAGGTTCTTCAT 57.523 30.769 0.00 0.00 0.00 2.57
247 248 7.889873 TCATGGTTTAGAAAAAGGTTCTTCA 57.110 32.000 0.00 0.00 0.00 3.02
248 249 8.797438 AGATCATGGTTTAGAAAAAGGTTCTTC 58.203 33.333 0.00 0.00 0.00 2.87
249 250 8.712228 AGATCATGGTTTAGAAAAAGGTTCTT 57.288 30.769 0.00 0.00 0.00 2.52
250 251 8.712228 AAGATCATGGTTTAGAAAAAGGTTCT 57.288 30.769 0.00 0.00 0.00 3.01
251 252 9.764363 AAAAGATCATGGTTTAGAAAAAGGTTC 57.236 29.630 0.00 0.00 0.00 3.62
291 292 8.820831 CCATCCATCTATTGTACCTCTTAATCT 58.179 37.037 0.00 0.00 0.00 2.40
292 293 8.598041 ACCATCCATCTATTGTACCTCTTAATC 58.402 37.037 0.00 0.00 0.00 1.75
293 294 8.511748 ACCATCCATCTATTGTACCTCTTAAT 57.488 34.615 0.00 0.00 0.00 1.40
294 295 7.931015 ACCATCCATCTATTGTACCTCTTAA 57.069 36.000 0.00 0.00 0.00 1.85
295 296 7.789831 AGAACCATCCATCTATTGTACCTCTTA 59.210 37.037 0.00 0.00 0.00 2.10
296 297 6.617371 AGAACCATCCATCTATTGTACCTCTT 59.383 38.462 0.00 0.00 0.00 2.85
297 298 6.042552 CAGAACCATCCATCTATTGTACCTCT 59.957 42.308 0.00 0.00 0.00 3.69
298 299 6.183361 ACAGAACCATCCATCTATTGTACCTC 60.183 42.308 0.00 0.00 0.00 3.85
299 300 5.667626 ACAGAACCATCCATCTATTGTACCT 59.332 40.000 0.00 0.00 0.00 3.08
300 301 5.760253 CACAGAACCATCCATCTATTGTACC 59.240 44.000 0.00 0.00 0.00 3.34
301 302 5.237344 GCACAGAACCATCCATCTATTGTAC 59.763 44.000 0.00 0.00 0.00 2.90
302 303 5.104569 TGCACAGAACCATCCATCTATTGTA 60.105 40.000 0.00 0.00 0.00 2.41
303 304 4.202441 GCACAGAACCATCCATCTATTGT 58.798 43.478 0.00 0.00 0.00 2.71
304 305 4.201657 TGCACAGAACCATCCATCTATTG 58.798 43.478 0.00 0.00 0.00 1.90
305 306 4.508551 TGCACAGAACCATCCATCTATT 57.491 40.909 0.00 0.00 0.00 1.73
306 307 4.508551 TTGCACAGAACCATCCATCTAT 57.491 40.909 0.00 0.00 0.00 1.98
307 308 3.998913 TTGCACAGAACCATCCATCTA 57.001 42.857 0.00 0.00 0.00 1.98
308 309 2.885135 TTGCACAGAACCATCCATCT 57.115 45.000 0.00 0.00 0.00 2.90
309 310 5.126061 ACTTTATTGCACAGAACCATCCATC 59.874 40.000 0.00 0.00 0.00 3.51
310 311 5.018809 ACTTTATTGCACAGAACCATCCAT 58.981 37.500 0.00 0.00 0.00 3.41
311 312 4.406456 ACTTTATTGCACAGAACCATCCA 58.594 39.130 0.00 0.00 0.00 3.41
312 313 5.449177 GCTACTTTATTGCACAGAACCATCC 60.449 44.000 0.00 0.00 0.00 3.51
313 314 5.123820 TGCTACTTTATTGCACAGAACCATC 59.876 40.000 0.00 0.00 33.87 3.51
314 315 5.009631 TGCTACTTTATTGCACAGAACCAT 58.990 37.500 0.00 0.00 33.87 3.55
315 316 4.393834 TGCTACTTTATTGCACAGAACCA 58.606 39.130 0.00 0.00 33.87 3.67
323 324 1.091537 GGCGGTGCTACTTTATTGCA 58.908 50.000 0.00 0.00 36.66 4.08
324 325 1.091537 TGGCGGTGCTACTTTATTGC 58.908 50.000 0.00 0.00 0.00 3.56
325 326 1.400494 GGTGGCGGTGCTACTTTATTG 59.600 52.381 5.29 0.00 39.93 1.90
326 327 1.680860 GGGTGGCGGTGCTACTTTATT 60.681 52.381 5.29 0.00 39.93 1.40
327 328 0.107361 GGGTGGCGGTGCTACTTTAT 60.107 55.000 5.29 0.00 39.93 1.40
328 329 1.196104 AGGGTGGCGGTGCTACTTTA 61.196 55.000 5.29 0.00 39.93 1.85
329 330 2.033602 GGGTGGCGGTGCTACTTT 59.966 61.111 5.29 0.00 39.93 2.66
330 331 2.928396 AGGGTGGCGGTGCTACTT 60.928 61.111 5.29 0.00 39.93 2.24
331 332 3.706373 CAGGGTGGCGGTGCTACT 61.706 66.667 5.29 0.00 39.93 2.57
332 333 2.175035 TAACAGGGTGGCGGTGCTAC 62.175 60.000 0.00 0.00 39.31 3.58
333 334 1.895020 CTAACAGGGTGGCGGTGCTA 61.895 60.000 0.00 0.00 0.00 3.49
334 335 3.246112 TAACAGGGTGGCGGTGCT 61.246 61.111 0.00 0.00 0.00 4.40
335 336 2.175035 TACTAACAGGGTGGCGGTGC 62.175 60.000 0.00 0.00 0.00 5.01
336 337 0.539986 ATACTAACAGGGTGGCGGTG 59.460 55.000 0.00 0.00 0.00 4.94
337 338 0.539986 CATACTAACAGGGTGGCGGT 59.460 55.000 0.00 0.00 0.00 5.68
338 339 0.814010 GCATACTAACAGGGTGGCGG 60.814 60.000 0.00 0.00 0.00 6.13
339 340 0.178068 AGCATACTAACAGGGTGGCG 59.822 55.000 0.00 0.00 0.00 5.69
340 341 1.486726 AGAGCATACTAACAGGGTGGC 59.513 52.381 0.00 0.00 0.00 5.01
341 342 3.535561 CAAGAGCATACTAACAGGGTGG 58.464 50.000 0.00 0.00 0.00 4.61
342 343 2.939103 GCAAGAGCATACTAACAGGGTG 59.061 50.000 0.00 0.00 41.58 4.61
343 344 2.092914 GGCAAGAGCATACTAACAGGGT 60.093 50.000 0.00 0.00 44.61 4.34
344 345 2.171448 AGGCAAGAGCATACTAACAGGG 59.829 50.000 0.00 0.00 44.61 4.45
345 346 3.550437 AGGCAAGAGCATACTAACAGG 57.450 47.619 0.00 0.00 44.61 4.00
346 347 4.697352 ACAAAGGCAAGAGCATACTAACAG 59.303 41.667 0.00 0.00 44.61 3.16
347 348 4.651778 ACAAAGGCAAGAGCATACTAACA 58.348 39.130 0.00 0.00 44.61 2.41
348 349 5.629079 AACAAAGGCAAGAGCATACTAAC 57.371 39.130 0.00 0.00 44.61 2.34
349 350 7.165485 TCTTAACAAAGGCAAGAGCATACTAA 58.835 34.615 0.00 0.00 44.61 2.24
350 351 6.707290 TCTTAACAAAGGCAAGAGCATACTA 58.293 36.000 0.00 0.00 44.61 1.82
351 352 5.560724 TCTTAACAAAGGCAAGAGCATACT 58.439 37.500 0.00 0.00 44.61 2.12
352 353 5.873732 CTCTTAACAAAGGCAAGAGCATAC 58.126 41.667 0.00 0.00 44.61 2.39
357 358 4.699257 AGATGCTCTTAACAAAGGCAAGAG 59.301 41.667 6.27 6.27 45.26 2.85
358 359 4.655963 AGATGCTCTTAACAAAGGCAAGA 58.344 39.130 0.00 0.00 36.49 3.02
359 360 4.699257 AGAGATGCTCTTAACAAAGGCAAG 59.301 41.667 0.00 0.00 37.60 4.01
360 361 4.655963 AGAGATGCTCTTAACAAAGGCAA 58.344 39.130 0.00 0.00 37.60 4.52
361 362 4.292186 AGAGATGCTCTTAACAAAGGCA 57.708 40.909 0.00 0.00 37.60 4.75
362 363 6.238593 CCATTAGAGATGCTCTTAACAAAGGC 60.239 42.308 1.88 0.00 41.50 4.35
363 364 7.050377 TCCATTAGAGATGCTCTTAACAAAGG 58.950 38.462 1.88 0.00 41.50 3.11
364 365 8.557864 CATCCATTAGAGATGCTCTTAACAAAG 58.442 37.037 1.88 0.00 41.50 2.77
365 366 7.500227 CCATCCATTAGAGATGCTCTTAACAAA 59.500 37.037 1.88 0.00 41.50 2.83
366 367 6.994496 CCATCCATTAGAGATGCTCTTAACAA 59.006 38.462 1.88 0.00 41.50 2.83
367 368 6.100279 ACCATCCATTAGAGATGCTCTTAACA 59.900 38.462 1.88 0.00 41.50 2.41
368 369 6.426328 CACCATCCATTAGAGATGCTCTTAAC 59.574 42.308 1.88 0.00 41.50 2.01
369 370 6.100279 ACACCATCCATTAGAGATGCTCTTAA 59.900 38.462 1.88 0.00 41.50 1.85
370 371 5.604231 ACACCATCCATTAGAGATGCTCTTA 59.396 40.000 1.88 0.00 41.50 2.10
371 372 4.411540 ACACCATCCATTAGAGATGCTCTT 59.588 41.667 1.88 0.00 41.50 2.85
384 385 4.157656 CACGTCCAAATTTACACCATCCAT 59.842 41.667 0.00 0.00 0.00 3.41
436 437 5.546621 AGGAGGCGTATAATTTAGCAAGA 57.453 39.130 0.00 0.00 0.00 3.02
452 453 3.418684 TCCACTGAAAAACTAGGAGGC 57.581 47.619 0.00 0.00 0.00 4.70
458 459 6.981762 TTTACACGTTCCACTGAAAAACTA 57.018 33.333 0.00 0.00 30.79 2.24
488 489 4.037021 CCGTCGCGTTTCTAATATACACA 58.963 43.478 5.77 0.00 0.00 3.72
498 499 2.355481 GGTCACCGTCGCGTTTCT 60.355 61.111 5.77 0.00 0.00 2.52
499 500 2.355481 AGGTCACCGTCGCGTTTC 60.355 61.111 5.77 0.00 0.00 2.78
521 522 2.414840 GAAGGATCGGAGGAGCTCGC 62.415 65.000 7.83 1.84 0.00 5.03
522 523 1.657556 GAAGGATCGGAGGAGCTCG 59.342 63.158 7.83 0.00 0.00 5.03
523 524 0.469144 AGGAAGGATCGGAGGAGCTC 60.469 60.000 4.71 4.71 0.00 4.09
524 525 0.031616 AAGGAAGGATCGGAGGAGCT 60.032 55.000 0.00 0.00 0.00 4.09
525 526 0.391228 GAAGGAAGGATCGGAGGAGC 59.609 60.000 0.00 0.00 0.00 4.70
526 527 0.671251 CGAAGGAAGGATCGGAGGAG 59.329 60.000 0.00 0.00 35.49 3.69
555 556 3.991536 GAGACCGCTGCTTCGTCCC 62.992 68.421 0.00 0.00 0.00 4.46
556 557 2.493907 AAGAGACCGCTGCTTCGTCC 62.494 60.000 0.00 0.00 0.00 4.79
557 558 0.667792 AAAGAGACCGCTGCTTCGTC 60.668 55.000 0.00 0.70 0.00 4.20
558 559 0.249911 AAAAGAGACCGCTGCTTCGT 60.250 50.000 0.00 0.00 0.00 3.85
559 560 0.868406 AAAAAGAGACCGCTGCTTCG 59.132 50.000 0.00 0.00 0.00 3.79
560 561 1.136224 CGAAAAAGAGACCGCTGCTTC 60.136 52.381 0.00 0.00 0.00 3.86
561 562 0.868406 CGAAAAAGAGACCGCTGCTT 59.132 50.000 0.00 0.00 0.00 3.91
562 563 1.569479 GCGAAAAAGAGACCGCTGCT 61.569 55.000 0.00 0.00 43.75 4.24
563 564 1.154395 GCGAAAAAGAGACCGCTGC 60.154 57.895 0.00 0.00 43.75 5.25
564 565 1.130613 CGCGAAAAAGAGACCGCTG 59.869 57.895 0.00 0.00 44.77 5.18
565 566 1.006571 TCGCGAAAAAGAGACCGCT 60.007 52.632 6.20 0.00 44.77 5.52
566 567 1.416434 CTCGCGAAAAAGAGACCGC 59.584 57.895 11.33 0.00 43.68 5.68
567 568 0.666577 ACCTCGCGAAAAAGAGACCG 60.667 55.000 11.33 0.00 36.65 4.79
568 569 1.069255 GACCTCGCGAAAAAGAGACC 58.931 55.000 11.33 0.00 36.65 3.85
569 570 1.456165 GTGACCTCGCGAAAAAGAGAC 59.544 52.381 11.33 0.00 36.65 3.36
570 571 1.779569 GTGACCTCGCGAAAAAGAGA 58.220 50.000 11.33 0.00 36.65 3.10
587 588 3.782244 GAGCAAGCCACGCTCGTG 61.782 66.667 14.78 14.78 45.82 4.35
591 592 2.507110 ATACACGAGCAAGCCACGCT 62.507 55.000 8.64 0.00 44.10 5.07
592 593 0.804544 TATACACGAGCAAGCCACGC 60.805 55.000 8.64 0.00 0.00 5.34
593 594 1.852942 ATATACACGAGCAAGCCACG 58.147 50.000 0.00 7.48 0.00 4.94
594 595 3.002348 GGAAATATACACGAGCAAGCCAC 59.998 47.826 0.00 0.00 0.00 5.01
595 596 3.202906 GGAAATATACACGAGCAAGCCA 58.797 45.455 0.00 0.00 0.00 4.75
596 597 3.002348 GTGGAAATATACACGAGCAAGCC 59.998 47.826 0.00 0.00 0.00 4.35
597 598 4.197107 GTGGAAATATACACGAGCAAGC 57.803 45.455 0.00 0.00 0.00 4.01
605 606 2.817901 ACGAGGCGTGGAAATATACAC 58.182 47.619 0.00 0.00 39.18 2.90
606 607 3.243501 GGTACGAGGCGTGGAAATATACA 60.244 47.826 2.33 0.00 41.39 2.29
607 608 3.311966 GGTACGAGGCGTGGAAATATAC 58.688 50.000 2.33 0.00 41.39 1.47
624 625 4.446413 CCCAGGCCACGACGGTAC 62.446 72.222 5.01 0.00 36.97 3.34
629 630 4.814294 CTACGCCCAGGCCACGAC 62.814 72.222 5.01 0.00 37.98 4.34
631 632 3.849951 ATCTACGCCCAGGCCACG 61.850 66.667 5.01 5.64 37.98 4.94
633 634 1.847798 AAACATCTACGCCCAGGCCA 61.848 55.000 5.01 0.00 37.98 5.36
634 635 0.179468 TAAACATCTACGCCCAGGCC 59.821 55.000 2.37 0.00 37.98 5.19
635 636 1.296727 GTAAACATCTACGCCCAGGC 58.703 55.000 0.00 0.00 37.85 4.85
636 637 2.277084 GTGTAAACATCTACGCCCAGG 58.723 52.381 0.00 0.00 0.00 4.45
637 638 1.924524 CGTGTAAACATCTACGCCCAG 59.075 52.381 0.00 0.00 0.00 4.45
642 643 2.288961 AGGGCGTGTAAACATCTACG 57.711 50.000 0.00 0.00 39.37 3.51
643 644 5.409214 TGTAAAAGGGCGTGTAAACATCTAC 59.591 40.000 0.00 0.00 0.00 2.59
644 645 5.409214 GTGTAAAAGGGCGTGTAAACATCTA 59.591 40.000 0.00 0.00 0.00 1.98
645 646 4.214758 GTGTAAAAGGGCGTGTAAACATCT 59.785 41.667 0.00 0.00 0.00 2.90
646 647 4.469552 GTGTAAAAGGGCGTGTAAACATC 58.530 43.478 0.00 0.00 0.00 3.06
647 648 3.058777 CGTGTAAAAGGGCGTGTAAACAT 60.059 43.478 0.00 0.00 0.00 2.71
648 649 2.287373 CGTGTAAAAGGGCGTGTAAACA 59.713 45.455 0.00 0.00 0.00 2.83
649 650 2.543430 TCGTGTAAAAGGGCGTGTAAAC 59.457 45.455 0.00 0.00 0.00 2.01
650 651 2.801679 CTCGTGTAAAAGGGCGTGTAAA 59.198 45.455 0.00 0.00 0.00 2.01
652 653 1.340889 ACTCGTGTAAAAGGGCGTGTA 59.659 47.619 0.00 0.00 30.94 2.90
653 654 0.105408 ACTCGTGTAAAAGGGCGTGT 59.895 50.000 0.00 0.00 0.00 4.49
657 658 0.669625 AGCGACTCGTGTAAAAGGGC 60.670 55.000 0.00 0.00 0.00 5.19
658 659 1.068474 CAGCGACTCGTGTAAAAGGG 58.932 55.000 0.00 0.00 0.00 3.95
660 661 1.068474 CCCAGCGACTCGTGTAAAAG 58.932 55.000 0.00 0.00 0.00 2.27
661 662 0.675083 TCCCAGCGACTCGTGTAAAA 59.325 50.000 0.00 0.00 0.00 1.52
664 665 2.697761 GCTCCCAGCGACTCGTGTA 61.698 63.158 0.00 0.00 0.00 2.90
665 666 4.057428 GCTCCCAGCGACTCGTGT 62.057 66.667 0.00 0.00 0.00 4.49
666 667 3.978723 CTGCTCCCAGCGACTCGTG 62.979 68.421 0.00 0.00 46.26 4.35
667 668 3.753434 CTGCTCCCAGCGACTCGT 61.753 66.667 0.00 0.00 46.26 4.18
669 670 0.603975 AAAACTGCTCCCAGCGACTC 60.604 55.000 0.00 0.00 46.26 3.36
670 671 0.179018 AAAAACTGCTCCCAGCGACT 60.179 50.000 0.00 0.00 46.26 4.18
671 672 0.238553 GAAAAACTGCTCCCAGCGAC 59.761 55.000 0.00 0.00 46.26 5.19
672 673 0.179032 TGAAAAACTGCTCCCAGCGA 60.179 50.000 0.00 0.00 46.26 4.93
673 674 0.239347 CTGAAAAACTGCTCCCAGCG 59.761 55.000 0.00 0.00 46.26 5.18
674 675 0.038801 GCTGAAAAACTGCTCCCAGC 60.039 55.000 0.00 0.00 43.02 4.85
688 689 8.344446 AGCAAATATATATGATGCAAGCTGAA 57.656 30.769 24.58 0.00 39.42 3.02
695 696 9.816354 ACGTGTATAGCAAATATATATGATGCA 57.184 29.630 24.58 15.87 39.42 3.96
700 701 9.581099 TGTGGACGTGTATAGCAAATATATATG 57.419 33.333 0.00 0.00 33.11 1.78
703 704 9.803315 CTATGTGGACGTGTATAGCAAATATAT 57.197 33.333 0.00 0.00 0.00 0.86
705 706 7.892609 TCTATGTGGACGTGTATAGCAAATAT 58.107 34.615 0.00 0.00 0.00 1.28
706 707 7.279750 TCTATGTGGACGTGTATAGCAAATA 57.720 36.000 0.00 0.00 0.00 1.40
707 708 6.156748 TCTATGTGGACGTGTATAGCAAAT 57.843 37.500 0.00 0.00 0.00 2.32
708 709 5.585820 TCTATGTGGACGTGTATAGCAAA 57.414 39.130 0.00 0.00 0.00 3.68
710 711 4.825085 TCATCTATGTGGACGTGTATAGCA 59.175 41.667 0.00 0.00 0.00 3.49
711 712 5.372547 TCATCTATGTGGACGTGTATAGC 57.627 43.478 0.00 0.00 0.00 2.97
713 714 6.007703 TGGATCATCTATGTGGACGTGTATA 58.992 40.000 0.00 0.00 0.00 1.47
714 715 4.832823 TGGATCATCTATGTGGACGTGTAT 59.167 41.667 0.00 0.00 0.00 2.29
716 717 3.031013 TGGATCATCTATGTGGACGTGT 58.969 45.455 0.00 0.00 0.00 4.49
718 719 3.300388 AGTGGATCATCTATGTGGACGT 58.700 45.455 0.00 0.00 0.00 4.34
720 721 6.007076 TCTCTAGTGGATCATCTATGTGGAC 58.993 44.000 0.00 0.00 0.00 4.02
721 722 6.206180 TCTCTAGTGGATCATCTATGTGGA 57.794 41.667 0.00 0.00 0.00 4.02
722 723 6.627731 GCATCTCTAGTGGATCATCTATGTGG 60.628 46.154 0.00 0.00 0.00 4.17
725 726 6.377712 TGAGCATCTCTAGTGGATCATCTATG 59.622 42.308 0.00 0.00 34.92 2.23
726 727 6.492274 TGAGCATCTCTAGTGGATCATCTAT 58.508 40.000 0.00 0.00 34.92 1.98
727 728 5.885465 TGAGCATCTCTAGTGGATCATCTA 58.115 41.667 0.00 0.00 34.92 1.98
728 729 4.738685 TGAGCATCTCTAGTGGATCATCT 58.261 43.478 0.00 0.00 34.92 2.90
729 730 5.465532 TTGAGCATCTCTAGTGGATCATC 57.534 43.478 0.00 0.00 34.92 2.92
734 735 5.047448 GCTGATATTGAGCATCTCTAGTGGA 60.047 44.000 3.42 0.00 36.40 4.02
736 737 5.780984 TGCTGATATTGAGCATCTCTAGTG 58.219 41.667 6.33 0.00 41.56 2.74
737 738 6.416631 TTGCTGATATTGAGCATCTCTAGT 57.583 37.500 10.29 0.00 45.69 2.57
738 739 5.349270 GCTTGCTGATATTGAGCATCTCTAG 59.651 44.000 10.29 6.59 45.69 2.43
740 741 4.066490 GCTTGCTGATATTGAGCATCTCT 58.934 43.478 10.29 0.00 45.69 3.10
741 742 3.813724 TGCTTGCTGATATTGAGCATCTC 59.186 43.478 10.29 5.02 45.69 2.75
743 744 3.609644 GCTGCTTGCTGATATTGAGCATC 60.610 47.826 10.29 7.12 45.69 3.91
744 745 2.293677 GCTGCTTGCTGATATTGAGCAT 59.706 45.455 10.29 0.00 45.69 3.79
747 748 1.333881 GCGCTGCTTGCTGATATTGAG 60.334 52.381 0.00 0.00 40.11 3.02
748 749 0.659427 GCGCTGCTTGCTGATATTGA 59.341 50.000 0.00 0.00 40.11 2.57
749 750 0.317603 GGCGCTGCTTGCTGATATTG 60.318 55.000 7.64 0.00 40.11 1.90
750 751 1.779025 CGGCGCTGCTTGCTGATATT 61.779 55.000 7.64 0.00 41.30 1.28
753 754 3.664025 TACGGCGCTGCTTGCTGAT 62.664 57.895 18.15 0.00 41.30 2.90
754 755 4.371590 TACGGCGCTGCTTGCTGA 62.372 61.111 18.15 0.00 41.30 4.26
755 756 4.152625 GTACGGCGCTGCTTGCTG 62.153 66.667 18.15 6.78 44.36 4.41
756 757 4.680237 TGTACGGCGCTGCTTGCT 62.680 61.111 18.15 0.00 40.11 3.91
757 758 4.152625 CTGTACGGCGCTGCTTGC 62.153 66.667 18.15 1.48 38.57 4.01
759 760 3.649277 CTCCTGTACGGCGCTGCTT 62.649 63.158 18.15 0.00 0.00 3.91
760 761 4.135153 CTCCTGTACGGCGCTGCT 62.135 66.667 18.15 6.33 0.00 4.24
764 765 4.874977 GGAGCTCCTGTACGGCGC 62.875 72.222 26.25 0.00 43.98 6.53
765 766 4.208686 GGGAGCTCCTGTACGGCG 62.209 72.222 31.36 4.80 35.95 6.46
766 767 3.851128 GGGGAGCTCCTGTACGGC 61.851 72.222 31.36 13.25 35.95 5.68
768 769 1.601419 TTTCGGGGAGCTCCTGTACG 61.601 60.000 31.36 26.84 42.62 3.67
769 770 0.108281 GTTTCGGGGAGCTCCTGTAC 60.108 60.000 31.36 20.04 42.62 2.90
770 771 0.543410 TGTTTCGGGGAGCTCCTGTA 60.543 55.000 31.36 15.59 42.62 2.74
772 773 1.376037 GTGTTTCGGGGAGCTCCTG 60.376 63.158 31.36 23.31 43.43 3.86
773 774 1.536662 AGTGTTTCGGGGAGCTCCT 60.537 57.895 31.36 6.10 35.95 3.69
774 775 1.376037 CAGTGTTTCGGGGAGCTCC 60.376 63.158 25.59 25.59 0.00 4.70
776 777 0.535102 CAACAGTGTTTCGGGGAGCT 60.535 55.000 5.57 0.00 0.00 4.09
777 778 0.818040 ACAACAGTGTTTCGGGGAGC 60.818 55.000 5.57 0.00 32.58 4.70
778 779 1.675552 AACAACAGTGTTTCGGGGAG 58.324 50.000 5.57 0.00 46.01 4.30
779 780 3.886324 AACAACAGTGTTTCGGGGA 57.114 47.368 5.57 0.00 46.01 4.81
803 804 2.837291 CTCTCCTCTCCCTGGCGG 60.837 72.222 0.00 0.00 0.00 6.13
807 815 1.904032 GCCAACTCTCCTCTCCCTG 59.096 63.158 0.00 0.00 0.00 4.45
812 820 1.229209 TTCCCGCCAACTCTCCTCT 60.229 57.895 0.00 0.00 0.00 3.69
900 909 1.069823 CTGTGTGTGAGAGCCACTCTT 59.930 52.381 9.39 0.00 45.86 2.85
941 950 2.802106 GCCGAAGACGAGGAGGAG 59.198 66.667 0.00 0.00 42.66 3.69
942 951 3.132139 CGCCGAAGACGAGGAGGA 61.132 66.667 0.00 0.00 42.66 3.71
943 952 3.132139 TCGCCGAAGACGAGGAGG 61.132 66.667 0.00 0.00 42.66 4.30
1154 1163 1.153647 CTCGCAACGAGCCATACCA 60.154 57.895 3.83 0.00 46.75 3.25
1655 2162 4.573607 TCATCAATGGAAGATTCAGAAGCG 59.426 41.667 0.00 0.00 0.00 4.68
1675 2182 7.808381 CGAGACAGGTAATACATAACGAATCAT 59.192 37.037 0.00 0.00 0.00 2.45
1715 2222 1.003545 CTCAGTGAAACAGCACAACCG 60.004 52.381 0.00 0.00 41.43 4.44
1757 2264 3.055530 AGGCTACTGAGTTGGATGAACTG 60.056 47.826 0.00 0.00 45.48 3.16
1806 2313 1.670791 TTCCTGTTCACGTTGGGAAC 58.329 50.000 9.63 9.63 43.78 3.62
2061 2568 3.660111 ACAACGGCGCAAGGAAGC 61.660 61.111 10.83 0.00 38.28 3.86
2114 2621 0.823460 AGGCAAACAAACCTGTGGTG 59.177 50.000 0.00 0.00 35.34 4.17
2252 2759 6.409185 GCGTTTCAATCTCAAAGATATTGTCG 59.591 38.462 5.43 8.87 32.89 4.35
2475 2982 3.251729 CCAATTGATGCATCCCTTCTACG 59.748 47.826 23.67 5.56 0.00 3.51
2520 3027 8.677300 GTGCTATTGGATTTGTGAATTAGAAGA 58.323 33.333 0.00 0.00 0.00 2.87
2657 3164 4.402155 AGAAAGCAAAGACATGGACAACAA 59.598 37.500 0.00 0.00 0.00 2.83
2917 3646 7.440556 CGATATTCTTCTGTGACCTGAATTGAT 59.559 37.037 0.00 0.00 0.00 2.57
3049 3778 5.476945 TGATGGATCTTACGCAGCTATAAGA 59.523 40.000 14.99 14.99 40.70 2.10
4087 5224 1.449601 CGATGGCGGGCAGTACTTT 60.450 57.895 10.83 0.00 0.00 2.66
4115 5252 4.260170 CTGCTAGCATCTTGGAAGAAGTT 58.740 43.478 19.72 0.00 38.77 2.66
4153 5290 3.427573 TGAGTAACCGAACCTGATCTGA 58.572 45.455 0.38 0.00 0.00 3.27
4179 5316 3.637273 ACCAGCCACCGGAAGACC 61.637 66.667 9.46 0.00 0.00 3.85
4350 5493 2.781681 AATGTGGGGGAGAAACTACG 57.218 50.000 0.00 0.00 0.00 3.51
4406 5549 2.620115 CAGACTGCAGCTCCTTCAAAAA 59.380 45.455 15.27 0.00 0.00 1.94
4407 5550 2.224606 CAGACTGCAGCTCCTTCAAAA 58.775 47.619 15.27 0.00 0.00 2.44
4408 5551 1.141657 ACAGACTGCAGCTCCTTCAAA 59.858 47.619 15.27 0.00 0.00 2.69
4409 5552 0.761187 ACAGACTGCAGCTCCTTCAA 59.239 50.000 15.27 0.00 0.00 2.69
4410 5553 0.761187 AACAGACTGCAGCTCCTTCA 59.239 50.000 15.27 0.00 0.00 3.02
4411 5554 1.803555 GAAACAGACTGCAGCTCCTTC 59.196 52.381 15.27 11.93 0.00 3.46
4412 5555 1.419387 AGAAACAGACTGCAGCTCCTT 59.581 47.619 15.27 7.21 0.00 3.36
4413 5556 1.055040 AGAAACAGACTGCAGCTCCT 58.945 50.000 15.27 5.80 0.00 3.69
4414 5557 1.534595 CAAGAAACAGACTGCAGCTCC 59.465 52.381 15.27 3.20 0.00 4.70
4415 5558 1.534595 CCAAGAAACAGACTGCAGCTC 59.465 52.381 15.27 10.79 0.00 4.09
4416 5559 1.602311 CCAAGAAACAGACTGCAGCT 58.398 50.000 15.27 9.34 0.00 4.24
4417 5560 0.595095 CCCAAGAAACAGACTGCAGC 59.405 55.000 15.27 6.85 0.00 5.25
4418 5561 1.972872 ACCCAAGAAACAGACTGCAG 58.027 50.000 13.48 13.48 0.00 4.41
4419 5562 3.181445 ACATACCCAAGAAACAGACTGCA 60.181 43.478 1.25 0.00 0.00 4.41
4420 5563 3.412386 ACATACCCAAGAAACAGACTGC 58.588 45.455 1.25 0.00 0.00 4.40
4421 5564 5.639506 CACTACATACCCAAGAAACAGACTG 59.360 44.000 0.00 0.00 0.00 3.51
4422 5565 5.307196 ACACTACATACCCAAGAAACAGACT 59.693 40.000 0.00 0.00 0.00 3.24
4423 5566 5.548406 ACACTACATACCCAAGAAACAGAC 58.452 41.667 0.00 0.00 0.00 3.51
4472 5615 5.086104 ACATATCGAACAAGCTAGGTGTT 57.914 39.130 1.89 1.89 41.84 3.32
4479 5622 5.245531 TCCAAGAAACATATCGAACAAGCT 58.754 37.500 0.00 0.00 0.00 3.74
4580 5723 7.114388 GTCAACCGGAATGAAAATAAGTTGTTC 59.886 37.037 9.46 0.00 35.87 3.18
4707 6880 3.880490 GGGTCATGCCGAACAACATAATA 59.120 43.478 0.00 0.00 38.44 0.98
4708 6881 2.687935 GGGTCATGCCGAACAACATAAT 59.312 45.455 0.00 0.00 38.44 1.28
4709 6882 2.088423 GGGTCATGCCGAACAACATAA 58.912 47.619 0.00 0.00 38.44 1.90
4711 6884 0.965363 GGGGTCATGCCGAACAACAT 60.965 55.000 0.00 0.00 38.44 2.71
4712 6885 1.602323 GGGGTCATGCCGAACAACA 60.602 57.895 0.00 0.00 38.44 3.33
4719 6892 0.965439 TTTGAAAAGGGGTCATGCCG 59.035 50.000 0.00 0.00 38.44 5.69
4726 6899 1.799933 TGGCATGTTTGAAAAGGGGT 58.200 45.000 0.00 0.00 0.00 4.95
4936 7110 3.570550 TGGGTGTTATCGTTTGGGAAAAG 59.429 43.478 0.00 0.00 0.00 2.27
4941 7115 1.538075 GTGTGGGTGTTATCGTTTGGG 59.462 52.381 0.00 0.00 0.00 4.12
4942 7116 1.195900 CGTGTGGGTGTTATCGTTTGG 59.804 52.381 0.00 0.00 0.00 3.28
4947 7121 2.198406 CCATACGTGTGGGTGTTATCG 58.802 52.381 22.66 0.00 35.55 2.92
4955 7129 3.624326 CAAATATGCCATACGTGTGGG 57.376 47.619 29.62 14.57 39.73 4.61
4984 7158 0.537188 AGGTAGATCAAGGCGTGTGG 59.463 55.000 0.00 0.00 0.00 4.17
4990 7164 7.573968 AAACATAATCAAGGTAGATCAAGGC 57.426 36.000 0.00 0.00 0.00 4.35
4999 7173 9.585099 GAATTCATGCAAAACATAATCAAGGTA 57.415 29.630 0.00 0.00 36.64 3.08
5024 7198 3.751175 CGTGGCACTCAAATTCCTTAAGA 59.249 43.478 16.72 0.00 0.00 2.10
5027 7201 3.134574 ACGTGGCACTCAAATTCCTTA 57.865 42.857 16.72 0.00 0.00 2.69
5056 7230 0.377554 TTTAACGCCCACACAACACG 59.622 50.000 0.00 0.00 0.00 4.49
5121 7295 3.047877 GGAACTGGTTCGCCCACG 61.048 66.667 7.28 0.00 38.72 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.