Multiple sequence alignment - TraesCS1D01G131800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G131800 chr1D 100.000 4013 0 0 3963 7975 155731779 155735791 0.000000e+00 7411.0
1 TraesCS1D01G131800 chr1D 100.000 3668 0 0 1 3668 155727817 155731484 0.000000e+00 6774.0
2 TraesCS1D01G131800 chr1D 82.353 187 13 11 1637 1803 338270308 338270494 2.320000e-30 145.0
3 TraesCS1D01G131800 chr1D 82.065 184 15 5 1641 1806 51783584 51783401 3.000000e-29 141.0
4 TraesCS1D01G131800 chr1D 81.622 185 15 7 1641 1806 51803772 51803588 1.400000e-27 135.0
5 TraesCS1D01G131800 chr1D 81.283 187 15 11 1637 1803 177884344 177884530 5.020000e-27 134.0
6 TraesCS1D01G131800 chr1D 81.081 185 16 11 1637 1803 254053557 254053374 6.490000e-26 130.0
7 TraesCS1D01G131800 chr1D 80.435 184 14 6 1644 1805 7993422 7993239 3.910000e-23 121.0
8 TraesCS1D01G131800 chr1D 90.909 88 7 1 1716 1803 482898163 482898249 5.060000e-22 117.0
9 TraesCS1D01G131800 chr1D 88.060 67 5 2 7303 7366 483951390 483951456 8.580000e-10 76.8
10 TraesCS1D01G131800 chr1D 87.302 63 5 2 7307 7367 491801203 491801264 1.440000e-07 69.4
11 TraesCS1D01G131800 chr1A 96.139 3160 64 26 4188 7327 185144382 185141261 0.000000e+00 5107.0
12 TraesCS1D01G131800 chr1A 97.555 859 21 0 1804 2662 185145235 185144377 0.000000e+00 1471.0
13 TraesCS1D01G131800 chr1A 96.110 874 15 11 772 1642 185146353 185145496 0.000000e+00 1408.0
14 TraesCS1D01G131800 chr1A 88.535 942 54 25 2743 3660 589875709 589876620 0.000000e+00 1092.0
15 TraesCS1D01G131800 chr1A 94.136 648 11 6 1 621 203806047 203805400 0.000000e+00 961.0
16 TraesCS1D01G131800 chr1A 94.382 178 7 2 7301 7477 185119604 185119429 3.670000e-68 270.0
17 TraesCS1D01G131800 chr1A 89.759 166 8 6 615 778 203804946 203804788 3.770000e-48 204.0
18 TraesCS1D01G131800 chr1A 86.458 192 14 4 7492 7671 185119356 185119165 4.880000e-47 200.0
19 TraesCS1D01G131800 chr1A 98.214 112 2 0 7864 7975 185119070 185118959 6.310000e-46 196.0
20 TraesCS1D01G131800 chr1A 88.060 67 5 2 7303 7366 580955842 580955908 8.580000e-10 76.8
21 TraesCS1D01G131800 chr1B 96.567 1544 38 4 5811 7341 236959104 236957563 0.000000e+00 2543.0
22 TraesCS1D01G131800 chr1B 97.643 976 21 2 4882 5855 236960125 236959150 0.000000e+00 1674.0
23 TraesCS1D01G131800 chr1B 94.884 1036 20 13 615 1642 236963437 236962427 0.000000e+00 1589.0
24 TraesCS1D01G131800 chr1B 97.283 736 16 1 1804 2539 236962167 236961436 0.000000e+00 1245.0
25 TraesCS1D01G131800 chr1B 93.220 649 16 8 1 621 236969391 236968743 0.000000e+00 929.0
26 TraesCS1D01G131800 chr1B 94.815 540 19 2 4188 4720 236960688 236960151 0.000000e+00 833.0
27 TraesCS1D01G131800 chr1B 94.690 226 10 1 3963 4188 73859490 73859713 4.580000e-92 350.0
28 TraesCS1D01G131800 chr1B 94.690 226 10 1 3963 4188 73883820 73884043 4.580000e-92 350.0
29 TraesCS1D01G131800 chr1B 89.444 180 14 3 7797 7975 236955250 236955075 1.040000e-53 222.0
30 TraesCS1D01G131800 chr1B 92.063 126 8 1 7546 7671 236955445 236955322 8.230000e-40 176.0
31 TraesCS1D01G131800 chr1B 91.129 124 7 1 2537 2660 236961323 236961204 1.780000e-36 165.0
32 TraesCS1D01G131800 chr1B 85.455 165 14 6 1643 1799 71187901 71188063 6.400000e-36 163.0
33 TraesCS1D01G131800 chr1B 82.065 184 24 6 1637 1813 635927354 635927173 1.790000e-31 148.0
34 TraesCS1D01G131800 chr1B 100.000 45 0 0 5811 5855 236959149 236959105 5.130000e-12 84.2
35 TraesCS1D01G131800 chr1B 90.476 63 4 1 7303 7363 586282276 586282214 1.840000e-11 82.4
36 TraesCS1D01G131800 chr1B 88.889 63 4 2 7307 7366 217291938 217291876 3.090000e-09 75.0
37 TraesCS1D01G131800 chr4B 85.981 963 113 20 2662 3615 584081375 584080426 0.000000e+00 1011.0
38 TraesCS1D01G131800 chr4B 86.058 208 26 2 3413 3619 79198691 79198486 3.750000e-53 220.0
39 TraesCS1D01G131800 chr4B 84.393 173 17 7 1640 1803 375820615 375820786 2.300000e-35 161.0
40 TraesCS1D01G131800 chr5B 90.105 475 35 8 2654 3120 706019802 706019332 2.460000e-169 606.0
41 TraesCS1D01G131800 chr5B 94.805 231 10 2 3963 4193 706017598 706017370 7.610000e-95 359.0
42 TraesCS1D01G131800 chr5B 74.850 835 129 50 2749 3563 512943574 512944347 3.620000e-78 303.0
43 TraesCS1D01G131800 chr5B 87.805 82 7 2 7288 7366 472754843 472754762 8.520000e-15 93.5
44 TraesCS1D01G131800 chr2B 90.281 463 37 6 2663 3120 31509725 31509266 4.120000e-167 599.0
45 TraesCS1D01G131800 chr2B 93.333 225 13 2 3963 4187 31506684 31506462 1.660000e-86 331.0
46 TraesCS1D01G131800 chr2B 84.706 170 18 6 1641 1803 54182689 54182857 6.400000e-36 163.0
47 TraesCS1D01G131800 chr2B 84.946 93 11 2 7284 7373 249200161 249200253 3.060000e-14 91.6
48 TraesCS1D01G131800 chr7B 91.183 431 27 9 2661 3081 651305690 651306119 6.940000e-160 575.0
49 TraesCS1D01G131800 chrUn 89.224 464 39 10 2659 3115 220214912 220214453 3.230000e-158 569.0
50 TraesCS1D01G131800 chrUn 88.937 461 40 9 2662 3116 51101139 51100684 6.990000e-155 558.0
51 TraesCS1D01G131800 chrUn 93.778 225 12 2 3963 4187 371628012 371628234 3.570000e-88 337.0
52 TraesCS1D01G131800 chr3B 88.627 466 40 10 2662 3120 661766904 661767363 9.040000e-154 555.0
53 TraesCS1D01G131800 chr3B 93.392 227 11 4 3963 4187 366145772 366145996 4.610000e-87 333.0
54 TraesCS1D01G131800 chr3B 85.000 80 8 3 7290 7366 732437862 732437940 2.390000e-10 78.7
55 TraesCS1D01G131800 chr3B 84.146 82 10 2 7288 7366 501986615 501986696 8.580000e-10 76.8
56 TraesCS1D01G131800 chr4A 88.387 465 43 9 2662 3120 720557052 720556593 4.210000e-152 549.0
57 TraesCS1D01G131800 chr4A 93.833 227 7 6 3965 4187 703316318 703316541 1.280000e-87 335.0
58 TraesCS1D01G131800 chr4A 85.185 81 10 1 7285 7363 651625852 651625932 1.840000e-11 82.4
59 TraesCS1D01G131800 chr4A 86.957 69 9 0 7670 7738 12578919 12578987 2.390000e-10 78.7
60 TraesCS1D01G131800 chr3D 77.049 793 113 39 2806 3557 519689321 519688557 7.500000e-105 392.0
61 TraesCS1D01G131800 chr3D 83.333 192 13 8 1630 1804 445282386 445282197 8.280000e-35 159.0
62 TraesCS1D01G131800 chr3D 83.146 178 20 5 1636 1805 164636460 164636635 3.850000e-33 154.0
63 TraesCS1D01G131800 chr3D 82.979 188 12 11 1640 1807 137020842 137021029 1.390000e-32 152.0
64 TraesCS1D01G131800 chr3D 89.583 96 8 2 1709 1803 595873794 595873700 3.910000e-23 121.0
65 TraesCS1D01G131800 chr3D 92.537 67 2 2 7303 7366 163135412 163135478 8.520000e-15 93.5
66 TraesCS1D01G131800 chr3D 89.655 58 6 0 7286 7343 536881482 536881539 3.090000e-09 75.0
67 TraesCS1D01G131800 chr6B 93.778 225 9 4 3965 4187 76487496 76487275 4.610000e-87 333.0
68 TraesCS1D01G131800 chr6B 92.952 227 14 2 3963 4188 590541514 590541289 5.970000e-86 329.0
69 TraesCS1D01G131800 chr6B 83.721 172 19 6 1640 1803 375723709 375723539 3.850000e-33 154.0
70 TraesCS1D01G131800 chr5D 91.617 167 12 2 3501 3666 220379170 220379005 6.230000e-56 230.0
71 TraesCS1D01G131800 chr5D 85.714 168 14 7 1643 1803 214642161 214641997 1.380000e-37 169.0
72 TraesCS1D01G131800 chr5D 82.632 190 13 8 1634 1804 348748662 348748474 4.990000e-32 150.0
73 TraesCS1D01G131800 chr5D 81.395 172 20 7 1643 1805 291088090 291087922 6.490000e-26 130.0
74 TraesCS1D01G131800 chr5D 81.006 179 14 6 1645 1803 112950683 112950505 3.020000e-24 124.0
75 TraesCS1D01G131800 chr5D 87.805 82 7 2 7288 7366 391992735 391992654 8.520000e-15 93.5
76 TraesCS1D01G131800 chr4D 93.464 153 9 1 3509 3660 461860064 461860216 8.050000e-55 226.0
77 TraesCS1D01G131800 chr4D 84.737 190 10 7 1632 1803 70335886 70335698 1.060000e-38 172.0
78 TraesCS1D01G131800 chr4D 82.778 180 12 9 1642 1802 489955288 489955467 8.340000e-30 143.0
79 TraesCS1D01G131800 chr4D 80.905 199 16 8 1626 1804 493943681 493943877 3.880000e-28 137.0
80 TraesCS1D01G131800 chr4D 80.808 198 16 9 1627 1803 35722287 35722483 1.400000e-27 135.0
81 TraesCS1D01G131800 chr4D 80.874 183 13 10 1642 1802 29656653 29656471 3.020000e-24 124.0
82 TraesCS1D01G131800 chr4D 80.357 168 20 10 1643 1804 6777177 6777337 1.820000e-21 115.0
83 TraesCS1D01G131800 chr4D 87.368 95 9 1 1631 1722 493328022 493328116 1.090000e-18 106.0
84 TraesCS1D01G131800 chr4D 87.879 66 5 2 7304 7366 49508609 49508674 3.090000e-09 75.0
85 TraesCS1D01G131800 chr4D 88.333 60 7 0 7284 7343 474374147 474374206 1.110000e-08 73.1
86 TraesCS1D01G131800 chr4D 86.667 60 8 0 7284 7343 3590470 3590529 5.160000e-07 67.6
87 TraesCS1D01G131800 chr4D 87.500 56 7 0 7288 7343 136489528 136489583 1.860000e-06 65.8
88 TraesCS1D01G131800 chr2D 92.453 159 11 1 3509 3666 568134119 568133961 8.050000e-55 226.0
89 TraesCS1D01G131800 chr2D 93.464 153 9 1 3509 3660 603935696 603935848 8.050000e-55 226.0
90 TraesCS1D01G131800 chr2D 85.030 167 20 3 1643 1804 71959455 71959621 1.780000e-36 165.0
91 TraesCS1D01G131800 chr2D 84.091 176 19 7 1635 1803 36493514 36493341 2.300000e-35 161.0
92 TraesCS1D01G131800 chr2D 83.243 185 20 7 1638 1812 30327167 30326984 8.280000e-35 159.0
93 TraesCS1D01G131800 chr2D 87.879 66 5 2 7304 7366 387193711 387193776 3.090000e-09 75.0
94 TraesCS1D01G131800 chr7D 91.304 161 12 2 3504 3663 17115458 17115299 1.350000e-52 219.0
95 TraesCS1D01G131800 chr7D 80.928 194 15 11 1640 1813 77396325 77396134 5.020000e-27 134.0
96 TraesCS1D01G131800 chr7D 80.537 149 19 8 1663 1803 135378439 135378293 1.090000e-18 106.0
97 TraesCS1D01G131800 chr7D 83.529 85 11 2 7285 7366 500775454 500775538 8.580000e-10 76.8
98 TraesCS1D01G131800 chr6D 91.195 159 10 4 3505 3660 266370328 266370485 6.270000e-51 213.0
99 TraesCS1D01G131800 chr6D 82.796 186 13 11 1637 1803 418375512 418375697 1.790000e-31 148.0
100 TraesCS1D01G131800 chr6D 81.868 182 15 6 1640 1803 271470748 271470929 3.880000e-28 137.0
101 TraesCS1D01G131800 chr6D 81.868 182 14 8 1640 1803 2739601 2739421 1.400000e-27 135.0
102 TraesCS1D01G131800 chr6D 81.768 181 16 6 1640 1803 38268739 38268559 1.400000e-27 135.0
103 TraesCS1D01G131800 chr6D 81.768 181 16 6 1640 1803 41739039 41738859 1.400000e-27 135.0
104 TraesCS1D01G131800 chr6D 81.768 181 16 6 1640 1803 43131922 43131742 1.400000e-27 135.0
105 TraesCS1D01G131800 chr6D 81.768 181 16 6 1640 1803 59245536 59245716 1.400000e-27 135.0
106 TraesCS1D01G131800 chr6D 81.667 180 16 6 1640 1802 48703989 48704168 5.020000e-27 134.0
107 TraesCS1D01G131800 chr6D 81.215 181 17 6 1640 1803 129823572 129823752 6.490000e-26 130.0
108 TraesCS1D01G131800 chr6D 81.215 181 12 8 1644 1803 72132353 72132174 8.400000e-25 126.0
109 TraesCS1D01G131800 chr6D 80.645 186 16 10 1640 1805 316230238 316230423 8.400000e-25 126.0
110 TraesCS1D01G131800 chr6D 80.110 181 18 8 1643 1805 307532534 307532354 1.410000e-22 119.0
111 TraesCS1D01G131800 chr6D 81.935 155 10 8 1667 1803 4643656 4643810 1.820000e-21 115.0
112 TraesCS1D01G131800 chr6D 82.963 135 13 9 1678 1804 83444127 83443995 6.540000e-21 113.0
113 TraesCS1D01G131800 chr6D 90.698 86 6 1 1716 1801 445581425 445581342 6.540000e-21 113.0
114 TraesCS1D01G131800 chr6D 90.909 77 7 0 1728 1804 452409044 452408968 3.940000e-18 104.0
115 TraesCS1D01G131800 chr6D 85.714 63 9 0 7281 7343 117920386 117920324 5.160000e-07 67.6
116 TraesCS1D01G131800 chr6D 87.500 56 7 0 7288 7343 152257792 152257847 1.860000e-06 65.8
117 TraesCS1D01G131800 chr6D 86.885 61 5 3 7285 7343 305021409 305021350 1.860000e-06 65.8
118 TraesCS1D01G131800 chr6D 95.122 41 2 0 7303 7343 467084165 467084125 1.860000e-06 65.8
119 TraesCS1D01G131800 chr2A 84.071 226 22 3 4728 4943 753092346 753092125 1.050000e-48 206.0
120 TraesCS1D01G131800 chr2A 85.965 171 15 6 1641 1804 18055618 18055786 2.960000e-39 174.0
121 TraesCS1D01G131800 chr5A 87.879 165 17 1 1643 1804 671258829 671258665 2.940000e-44 191.0
122 TraesCS1D01G131800 chr7A 86.471 170 15 6 1642 1804 576119949 576120117 6.360000e-41 180.0
123 TraesCS1D01G131800 chr7A 86.310 168 18 3 1641 1805 676957901 676957736 2.290000e-40 178.0
124 TraesCS1D01G131800 chr6A 97.561 41 1 0 7303 7343 190739652 190739612 3.990000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G131800 chr1D 155727817 155735791 7974 False 7092.500000 7411 100.000000 1 7975 2 chr1D.!!$F6 7974
1 TraesCS1D01G131800 chr1A 185141261 185146353 5092 True 2662.000000 5107 96.601333 772 7327 3 chr1A.!!$R2 6555
2 TraesCS1D01G131800 chr1A 589875709 589876620 911 False 1092.000000 1092 88.535000 2743 3660 1 chr1A.!!$F2 917
3 TraesCS1D01G131800 chr1A 203804788 203806047 1259 True 582.500000 961 91.947500 1 778 2 chr1A.!!$R3 777
4 TraesCS1D01G131800 chr1A 185118959 185119604 645 True 222.000000 270 93.018000 7301 7975 3 chr1A.!!$R1 674
5 TraesCS1D01G131800 chr1B 236955075 236963437 8362 True 947.911111 2543 94.869778 615 7975 9 chr1B.!!$R5 7360
6 TraesCS1D01G131800 chr1B 236968743 236969391 648 True 929.000000 929 93.220000 1 621 1 chr1B.!!$R2 620
7 TraesCS1D01G131800 chr4B 584080426 584081375 949 True 1011.000000 1011 85.981000 2662 3615 1 chr4B.!!$R2 953
8 TraesCS1D01G131800 chr5B 706017370 706019802 2432 True 482.500000 606 92.455000 2654 4193 2 chr5B.!!$R2 1539
9 TraesCS1D01G131800 chr5B 512943574 512944347 773 False 303.000000 303 74.850000 2749 3563 1 chr5B.!!$F1 814
10 TraesCS1D01G131800 chr2B 31506462 31509725 3263 True 465.000000 599 91.807000 2663 4187 2 chr2B.!!$R1 1524
11 TraesCS1D01G131800 chr3D 519688557 519689321 764 True 392.000000 392 77.049000 2806 3557 1 chr3D.!!$R2 751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
959 1449 0.245539 GTCTTCCCCACACGAATCGA 59.754 55.000 10.55 0.00 0.00 3.59 F
960 1450 0.970640 TCTTCCCCACACGAATCGAA 59.029 50.000 10.55 0.00 0.00 3.71 F
1737 2236 1.028905 TTTTCGGTCCCTTGTTGCTG 58.971 50.000 0.00 0.00 0.00 4.41 F
2105 2705 0.320683 TCACCAAGGCAGTGATCACG 60.321 55.000 19.85 15.27 39.29 4.35 F
3648 4706 1.285023 GGTCGTAGTGCCGCGATAT 59.715 57.895 8.23 0.00 39.38 1.63 F
4289 7065 0.959553 CATGCTGGATTGGATGGAGC 59.040 55.000 0.00 0.00 33.10 4.70 F
6106 8983 0.617820 AGGCAGGAGTATTGTCGGGT 60.618 55.000 0.00 0.00 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 2446 0.947244 CTGGGCGGTATCAATTCAGC 59.053 55.000 0.00 0.00 0.00 4.26 R
1848 2448 1.557371 TCACTGGGCGGTATCAATTCA 59.443 47.619 0.00 0.00 0.00 2.57 R
3389 4325 1.400846 GATGAAGTCGCTGAGTACGGA 59.599 52.381 0.00 0.00 0.00 4.69 R
4154 6930 4.166144 GGAGAAAGAGGGATTGGTGGAATA 59.834 45.833 0.00 0.00 0.00 1.75 R
5564 8351 1.070758 TGTCCTCAGCCTGAAAGACAC 59.929 52.381 18.46 3.19 35.85 3.67 R
6199 9076 1.095130 TGGAGGTAGGGAGGGTTGTA 58.905 55.000 0.00 0.00 0.00 2.41 R
7693 12508 0.037590 TACATTGCGTCCCAAAGGCT 59.962 50.000 0.00 0.00 39.53 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.675032 GCCTCTTTTTATGTTGGGCAGC 60.675 50.000 0.00 0.00 38.16 5.25
68 69 4.081752 TGTTGGGCAGCTGGTTATTTTATG 60.082 41.667 17.12 0.00 0.00 1.90
92 93 4.024133 CGTGCATTTGCTATATGTAAGCCA 60.024 41.667 3.94 0.00 42.66 4.75
286 287 9.108284 GCAGGTAATTGCATATTTTATTTTGGT 57.892 29.630 0.00 0.00 43.53 3.67
371 386 6.422223 CACATGTTTCTTGTGTCTTCAGTAC 58.578 40.000 0.00 0.00 39.66 2.73
438 453 7.881142 TGGAAATACCTTGTACATGTTTCTTG 58.119 34.615 2.30 0.00 39.86 3.02
519 547 8.195436 TGTATATACAGTTCAGTTAACCTCTGC 58.805 37.037 11.62 0.00 39.03 4.26
521 549 3.733337 ACAGTTCAGTTAACCTCTGCAG 58.267 45.455 7.63 7.63 39.03 4.41
745 1235 7.429633 AGTATTAATCGAACTGATGTCTCCAG 58.570 38.462 0.00 0.00 37.39 3.86
857 1347 3.476552 TCTGGAAGCGTCAAAAACATCT 58.523 40.909 1.14 0.00 0.00 2.90
858 1348 4.637276 TCTGGAAGCGTCAAAAACATCTA 58.363 39.130 1.14 0.00 0.00 1.98
912 1402 2.603075 AATACCAAAAGCAGGGCAGA 57.397 45.000 0.00 0.00 0.00 4.26
913 1403 2.603075 ATACCAAAAGCAGGGCAGAA 57.397 45.000 0.00 0.00 0.00 3.02
914 1404 1.909700 TACCAAAAGCAGGGCAGAAG 58.090 50.000 0.00 0.00 0.00 2.85
956 1446 1.375523 GCGTCTTCCCCACACGAAT 60.376 57.895 0.00 0.00 35.49 3.34
957 1447 1.359459 GCGTCTTCCCCACACGAATC 61.359 60.000 0.00 0.00 35.49 2.52
958 1448 1.076533 CGTCTTCCCCACACGAATCG 61.077 60.000 0.00 0.00 35.49 3.34
959 1449 0.245539 GTCTTCCCCACACGAATCGA 59.754 55.000 10.55 0.00 0.00 3.59
960 1450 0.970640 TCTTCCCCACACGAATCGAA 59.029 50.000 10.55 0.00 0.00 3.71
1105 1604 1.906333 GTTTCGCACCCCCACCAAT 60.906 57.895 0.00 0.00 0.00 3.16
1164 1663 3.584868 GACCACGACCTTCCCCACG 62.585 68.421 0.00 0.00 0.00 4.94
1642 2141 9.553064 AGATCTCTGCACAGGTAAATAAATAAG 57.447 33.333 0.00 0.00 0.00 1.73
1643 2142 8.682936 ATCTCTGCACAGGTAAATAAATAAGG 57.317 34.615 0.00 0.00 0.00 2.69
1644 2143 7.054124 TCTCTGCACAGGTAAATAAATAAGGG 58.946 38.462 0.00 0.00 0.00 3.95
1646 2145 6.826741 TCTGCACAGGTAAATAAATAAGGGTC 59.173 38.462 0.00 0.00 0.00 4.46
1647 2146 6.727394 TGCACAGGTAAATAAATAAGGGTCT 58.273 36.000 0.00 0.00 0.00 3.85
1648 2147 6.601613 TGCACAGGTAAATAAATAAGGGTCTG 59.398 38.462 0.00 0.00 0.00 3.51
1650 2149 7.201705 GCACAGGTAAATAAATAAGGGTCTGTC 60.202 40.741 0.00 0.00 30.56 3.51
1652 2151 9.275572 ACAGGTAAATAAATAAGGGTCTGTCTA 57.724 33.333 0.00 0.00 0.00 2.59
1653 2152 9.765795 CAGGTAAATAAATAAGGGTCTGTCTAG 57.234 37.037 0.00 0.00 0.00 2.43
1654 2153 8.935741 AGGTAAATAAATAAGGGTCTGTCTAGG 58.064 37.037 0.00 0.00 0.00 3.02
1655 2154 8.931568 GGTAAATAAATAAGGGTCTGTCTAGGA 58.068 37.037 0.00 0.00 0.00 2.94
1656 2155 9.761504 GTAAATAAATAAGGGTCTGTCTAGGAC 57.238 37.037 0.00 0.00 0.00 3.85
1657 2156 7.989947 AATAAATAAGGGTCTGTCTAGGACA 57.010 36.000 0.43 0.43 40.50 4.02
1658 2157 5.678955 AAATAAGGGTCTGTCTAGGACAC 57.321 43.478 0.00 0.00 37.67 3.67
1659 2158 2.696526 AAGGGTCTGTCTAGGACACA 57.303 50.000 3.18 0.00 39.36 3.72
1661 2160 2.741145 AGGGTCTGTCTAGGACACATC 58.259 52.381 3.18 0.00 39.36 3.06
1662 2161 2.313342 AGGGTCTGTCTAGGACACATCT 59.687 50.000 3.18 0.00 39.36 2.90
1663 2162 3.528078 AGGGTCTGTCTAGGACACATCTA 59.472 47.826 3.18 0.00 39.36 1.98
1664 2163 3.886505 GGGTCTGTCTAGGACACATCTAG 59.113 52.174 0.00 0.00 37.67 2.43
1665 2164 4.385421 GGGTCTGTCTAGGACACATCTAGA 60.385 50.000 0.00 0.00 37.67 2.43
1666 2165 5.381757 GGTCTGTCTAGGACACATCTAGAT 58.618 45.833 0.00 0.00 43.25 1.98
1695 2194 8.306313 ACATAGTTATGTCACATCTAACCTCA 57.694 34.615 0.00 0.00 42.96 3.86
1697 2196 9.201127 CATAGTTATGTCACATCTAACCTCATG 57.799 37.037 0.00 0.00 0.00 3.07
1699 2198 7.268586 AGTTATGTCACATCTAACCTCATGTC 58.731 38.462 0.00 0.00 30.48 3.06
1700 2199 4.471904 TGTCACATCTAACCTCATGTCC 57.528 45.455 0.00 0.00 30.48 4.02
1701 2200 3.837731 TGTCACATCTAACCTCATGTCCA 59.162 43.478 0.00 0.00 30.48 4.02
1704 2203 5.127194 GTCACATCTAACCTCATGTCCACTA 59.873 44.000 0.00 0.00 30.48 2.74
1705 2204 5.899547 TCACATCTAACCTCATGTCCACTAT 59.100 40.000 0.00 0.00 30.48 2.12
1707 2206 7.014326 TCACATCTAACCTCATGTCCACTATAC 59.986 40.741 0.00 0.00 30.48 1.47
1710 2209 7.348080 TCTAACCTCATGTCCACTATACTTG 57.652 40.000 0.00 0.00 0.00 3.16
1711 2210 6.895756 TCTAACCTCATGTCCACTATACTTGT 59.104 38.462 0.00 0.00 0.00 3.16
1712 2211 5.599999 ACCTCATGTCCACTATACTTGTC 57.400 43.478 0.00 0.00 0.00 3.18
1713 2212 5.273208 ACCTCATGTCCACTATACTTGTCT 58.727 41.667 0.00 0.00 0.00 3.41
1716 2215 7.565398 ACCTCATGTCCACTATACTTGTCTATT 59.435 37.037 0.00 0.00 0.00 1.73
1717 2216 8.424918 CCTCATGTCCACTATACTTGTCTATTT 58.575 37.037 0.00 0.00 0.00 1.40
1718 2217 9.823647 CTCATGTCCACTATACTTGTCTATTTT 57.176 33.333 0.00 0.00 0.00 1.82
1737 2236 1.028905 TTTTCGGTCCCTTGTTGCTG 58.971 50.000 0.00 0.00 0.00 4.41
1738 2237 1.452145 TTTCGGTCCCTTGTTGCTGC 61.452 55.000 0.00 0.00 0.00 5.25
1739 2238 3.726517 CGGTCCCTTGTTGCTGCG 61.727 66.667 0.00 0.00 0.00 5.18
1740 2239 2.594592 GGTCCCTTGTTGCTGCGT 60.595 61.111 0.00 0.00 0.00 5.24
1743 2242 1.165270 GTCCCTTGTTGCTGCGTTAT 58.835 50.000 0.00 0.00 0.00 1.89
1744 2243 1.539827 GTCCCTTGTTGCTGCGTTATT 59.460 47.619 0.00 0.00 0.00 1.40
1745 2244 2.030274 GTCCCTTGTTGCTGCGTTATTT 60.030 45.455 0.00 0.00 0.00 1.40
1746 2245 2.030363 TCCCTTGTTGCTGCGTTATTTG 60.030 45.455 0.00 0.00 0.00 2.32
1753 2252 3.980646 TGCTGCGTTATTTGTGAAACT 57.019 38.095 0.00 0.00 38.04 2.66
1754 2253 4.300189 TGCTGCGTTATTTGTGAAACTT 57.700 36.364 0.00 0.00 38.04 2.66
1756 2255 5.822278 TGCTGCGTTATTTGTGAAACTTTA 58.178 33.333 0.00 0.00 38.04 1.85
1758 2257 6.140110 GCTGCGTTATTTGTGAAACTTTAGA 58.860 36.000 0.00 0.00 38.04 2.10
1759 2258 6.801862 GCTGCGTTATTTGTGAAACTTTAGAT 59.198 34.615 0.00 0.00 38.04 1.98
1760 2259 7.201266 GCTGCGTTATTTGTGAAACTTTAGATG 60.201 37.037 0.00 0.00 38.04 2.90
1762 2261 7.589587 TGCGTTATTTGTGAAACTTTAGATGTG 59.410 33.333 0.00 0.00 38.04 3.21
1763 2262 7.801315 GCGTTATTTGTGAAACTTTAGATGTGA 59.199 33.333 0.00 0.00 38.04 3.58
1764 2263 9.103048 CGTTATTTGTGAAACTTTAGATGTGAC 57.897 33.333 0.00 0.00 38.04 3.67
1765 2264 9.944663 GTTATTTGTGAAACTTTAGATGTGACA 57.055 29.630 0.00 0.00 38.04 3.58
1768 2267 6.801539 TGTGAAACTTTAGATGTGACATCC 57.198 37.500 21.05 4.79 38.04 3.51
1769 2268 6.533730 TGTGAAACTTTAGATGTGACATCCT 58.466 36.000 21.05 11.44 38.04 3.24
1770 2269 6.998074 TGTGAAACTTTAGATGTGACATCCTT 59.002 34.615 21.05 7.22 38.04 3.36
1771 2270 8.154203 TGTGAAACTTTAGATGTGACATCCTTA 58.846 33.333 21.05 6.22 38.04 2.69
1773 2272 9.567776 TGAAACTTTAGATGTGACATCCTTAAA 57.432 29.630 21.05 17.47 0.00 1.52
1811 2411 9.990360 TGTGAATTAGACAAACTGTTCTACATA 57.010 29.630 0.00 0.00 0.00 2.29
1969 2569 5.284428 AGCTGTGTATATATCAGTCGTCG 57.716 43.478 14.80 0.00 0.00 5.12
2105 2705 0.320683 TCACCAAGGCAGTGATCACG 60.321 55.000 19.85 15.27 39.29 4.35
2569 3284 7.009815 CACTGCAAAAATGTAATCTTATGGCAG 59.990 37.037 0.00 0.00 46.64 4.85
2719 3435 2.019984 CTAGGATTTGTCCTGCCTTGC 58.980 52.381 7.23 0.00 40.93 4.01
2784 3501 3.691118 TGAGGCTCAAGCAATACAATGAC 59.309 43.478 16.28 0.00 44.36 3.06
2798 3606 7.596248 GCAATACAATGACATATTCCACCAATC 59.404 37.037 0.00 0.00 0.00 2.67
2804 3612 4.478317 TGACATATTCCACCAATCCCTCTT 59.522 41.667 0.00 0.00 0.00 2.85
2907 3720 3.771160 GTCGGCCTCCATGACCGT 61.771 66.667 0.00 0.00 46.92 4.83
3027 3846 4.735132 TCTCGCCGGTCGCTTTGG 62.735 66.667 12.56 2.48 38.27 3.28
3271 4199 3.190849 CGTCCGCTCATGTGCCAG 61.191 66.667 13.81 6.19 0.00 4.85
3389 4325 1.674322 CACGCCAATTCCCTTCCGT 60.674 57.895 0.00 0.00 0.00 4.69
3648 4706 1.285023 GGTCGTAGTGCCGCGATAT 59.715 57.895 8.23 0.00 39.38 1.63
4087 6862 2.019984 CTAGGATTTGTCCTGCCTTGC 58.980 52.381 7.23 0.00 40.93 4.01
4153 6929 1.804151 GGCTCAAGCAATACAACGACA 59.196 47.619 4.13 0.00 44.36 4.35
4154 6930 2.420022 GGCTCAAGCAATACAACGACAT 59.580 45.455 4.13 0.00 44.36 3.06
4155 6931 3.621268 GGCTCAAGCAATACAACGACATA 59.379 43.478 4.13 0.00 44.36 2.29
4157 6933 5.220854 GGCTCAAGCAATACAACGACATATT 60.221 40.000 4.13 0.00 44.36 1.28
4159 6935 6.358118 TCAAGCAATACAACGACATATTCC 57.642 37.500 0.00 0.00 0.00 3.01
4162 6938 4.574828 AGCAATACAACGACATATTCCACC 59.425 41.667 0.00 0.00 0.00 4.61
4165 6941 6.459573 GCAATACAACGACATATTCCACCAAT 60.460 38.462 0.00 0.00 0.00 3.16
4166 6942 6.861065 ATACAACGACATATTCCACCAATC 57.139 37.500 0.00 0.00 0.00 2.67
4289 7065 0.959553 CATGCTGGATTGGATGGAGC 59.040 55.000 0.00 0.00 33.10 4.70
4293 7069 1.303309 CTGGATTGGATGGAGCGTTC 58.697 55.000 0.00 0.00 0.00 3.95
4568 7351 9.911788 ATGACTTTGACAAGGTATTCTTCATAT 57.088 29.630 2.51 0.00 33.82 1.78
4592 7375 3.329386 CCATCTGTCTCGTGTGTGATTT 58.671 45.455 0.00 0.00 0.00 2.17
4594 7377 2.661594 TCTGTCTCGTGTGTGATTTCG 58.338 47.619 0.00 0.00 0.00 3.46
4665 7448 7.011828 ACGTACCTCAATTTTGCATATGTAC 57.988 36.000 4.29 0.00 0.00 2.90
4688 7471 1.946768 TGTGTTTGTAGTCTTGCCTGC 59.053 47.619 0.00 0.00 0.00 4.85
4736 7519 8.609176 TGTACACTTCACTGTTTATTGAGTTTC 58.391 33.333 0.00 0.00 0.00 2.78
4822 7607 2.421073 GAGCAATGTGTGAGCAGCATAA 59.579 45.455 0.00 0.00 0.00 1.90
4852 7637 8.058915 GCTCTAAGTATCTTACGCTTTTCATTG 58.941 37.037 0.00 0.00 0.00 2.82
4986 7771 9.770097 GAGATGAAATAACATCCTTATCTCACA 57.230 33.333 0.00 0.00 45.20 3.58
5002 7787 9.522804 CTTATCTCACACTTACTGATAACCTTC 57.477 37.037 0.00 0.00 0.00 3.46
5013 7798 1.664151 GATAACCTTCGCCCTTGTTCG 59.336 52.381 0.00 0.00 0.00 3.95
5016 7801 2.040544 CCTTCGCCCTTGTTCGCAT 61.041 57.895 0.00 0.00 0.00 4.73
5275 8061 4.391523 GGTGTCAAACATTGTGCTTTTTGT 59.608 37.500 0.00 0.00 32.02 2.83
5421 8207 6.268825 TCTTCTTGACAGGTACAGTATCAC 57.731 41.667 0.00 0.00 0.00 3.06
5635 8422 7.740781 GCGAAGTTGTCACTTAAAGAAATAGAC 59.259 37.037 0.00 0.00 43.79 2.59
5799 8586 8.634335 TGAAAATCATTTCTTCATAGTCACCA 57.366 30.769 3.31 0.00 44.32 4.17
5898 8775 1.836391 CCGAACATATGGCCCCAGA 59.164 57.895 7.80 0.00 0.00 3.86
5920 8797 5.008415 AGACACAGCTCTCAAAGTGAAATTG 59.992 40.000 6.62 0.00 35.97 2.32
5923 8800 3.005050 CAGCTCTCAAAGTGAAATTGCCA 59.995 43.478 0.00 0.00 0.00 4.92
5993 8870 3.598019 ATGTTGTGGCTTTTGGCTATG 57.402 42.857 0.00 0.00 46.20 2.23
6002 8879 0.740149 TTTTGGCTATGGCATCAGCG 59.260 50.000 1.65 0.00 43.41 5.18
6106 8983 0.617820 AGGCAGGAGTATTGTCGGGT 60.618 55.000 0.00 0.00 0.00 5.28
6199 9076 5.732331 TGACCAAGATTATCCCAAGGAAT 57.268 39.130 0.00 0.00 34.34 3.01
6519 9397 9.739786 CAATATAACGGAAACTTTTCAATTTGC 57.260 29.630 4.18 0.00 38.92 3.68
6983 9873 5.355350 ACAGCAATTGAATAGAACAGTAGGC 59.645 40.000 10.34 0.00 0.00 3.93
6988 9878 5.871396 TTGAATAGAACAGTAGGCTAGGG 57.129 43.478 0.00 0.00 0.00 3.53
7144 10034 5.645497 AGAGTTCAGTTATCAGTTTGGATGC 59.355 40.000 0.00 0.00 0.00 3.91
7171 10062 1.767681 TGGCTTTTGCTTGTTGGGAAT 59.232 42.857 0.00 0.00 46.54 3.01
7429 12154 4.147219 AGCGCAGAAATACTTTGTGTTC 57.853 40.909 11.47 0.00 36.40 3.18
7497 12280 8.665643 TTTTTGAGAATTGATGCAGTTGAATT 57.334 26.923 0.00 0.00 0.00 2.17
7532 12315 5.654603 TGTTTCAAGACTATTAGCTCGGA 57.345 39.130 0.00 0.00 0.00 4.55
7541 12336 1.490574 ATTAGCTCGGAACCTCTGCT 58.509 50.000 0.00 0.00 37.72 4.24
7544 12339 0.323908 AGCTCGGAACCTCTGCTAGT 60.324 55.000 0.00 0.00 31.71 2.57
7617 12432 0.251608 CCCAATCCCCTTTCACGGTT 60.252 55.000 0.00 0.00 0.00 4.44
7672 12487 2.458892 AATCCACTCGGGTTGGTGA 58.541 52.632 0.00 0.00 32.88 4.02
7673 12488 0.768622 AATCCACTCGGGTTGGTGAA 59.231 50.000 0.00 0.00 32.88 3.18
7674 12489 0.036306 ATCCACTCGGGTTGGTGAAC 59.964 55.000 0.00 0.00 38.11 3.18
7675 12490 1.052124 TCCACTCGGGTTGGTGAACT 61.052 55.000 0.00 0.00 38.11 3.01
7676 12491 0.682852 CCACTCGGGTTGGTGAACTA 59.317 55.000 0.00 0.00 35.69 2.24
7677 12492 1.278127 CCACTCGGGTTGGTGAACTAT 59.722 52.381 0.00 0.00 35.69 2.12
7680 12495 0.981183 TCGGGTTGGTGAACTATGCT 59.019 50.000 0.00 0.00 32.15 3.79
7681 12496 2.167693 CTCGGGTTGGTGAACTATGCTA 59.832 50.000 0.00 0.00 32.15 3.49
7683 12498 2.640184 GGGTTGGTGAACTATGCTACC 58.360 52.381 0.00 0.00 32.15 3.18
7684 12499 2.277084 GGTTGGTGAACTATGCTACCG 58.723 52.381 0.00 0.00 35.98 4.02
7685 12500 2.354403 GGTTGGTGAACTATGCTACCGT 60.354 50.000 0.00 0.00 35.98 4.83
7686 12501 2.665649 TGGTGAACTATGCTACCGTG 57.334 50.000 0.00 0.00 35.98 4.94
7687 12502 1.287425 GGTGAACTATGCTACCGTGC 58.713 55.000 0.00 0.00 0.00 5.34
7688 12503 0.921347 GTGAACTATGCTACCGTGCG 59.079 55.000 0.00 0.00 35.36 5.34
7689 12504 0.528924 TGAACTATGCTACCGTGCGT 59.471 50.000 0.00 0.00 35.36 5.24
7690 12505 1.744522 TGAACTATGCTACCGTGCGTA 59.255 47.619 0.00 0.00 35.36 4.42
7693 12508 1.951602 ACTATGCTACCGTGCGTATGA 59.048 47.619 0.00 0.00 34.42 2.15
7694 12509 2.031069 ACTATGCTACCGTGCGTATGAG 60.031 50.000 0.00 0.00 34.42 2.90
7696 12511 1.949631 GCTACCGTGCGTATGAGCC 60.950 63.158 0.00 0.00 36.02 4.70
7697 12512 1.734137 CTACCGTGCGTATGAGCCT 59.266 57.895 0.00 0.00 36.02 4.58
7700 12515 1.019278 ACCGTGCGTATGAGCCTTTG 61.019 55.000 0.00 0.00 36.02 2.77
7701 12516 1.705337 CCGTGCGTATGAGCCTTTGG 61.705 60.000 0.00 0.00 36.02 3.28
7702 12517 1.705337 CGTGCGTATGAGCCTTTGGG 61.705 60.000 0.00 0.00 36.02 4.12
7703 12518 0.392461 GTGCGTATGAGCCTTTGGGA 60.392 55.000 0.00 0.00 36.02 4.37
7705 12520 1.429148 GCGTATGAGCCTTTGGGACG 61.429 60.000 0.00 0.00 33.01 4.79
7707 12522 0.392461 GTATGAGCCTTTGGGACGCA 60.392 55.000 0.00 0.00 33.58 5.24
7708 12523 0.326595 TATGAGCCTTTGGGACGCAA 59.673 50.000 0.00 0.00 33.58 4.85
7709 12524 0.323725 ATGAGCCTTTGGGACGCAAT 60.324 50.000 5.70 0.00 33.58 3.56
7710 12525 1.243342 TGAGCCTTTGGGACGCAATG 61.243 55.000 5.70 8.31 33.58 2.82
7712 12527 0.037590 AGCCTTTGGGACGCAATGTA 59.962 50.000 5.70 0.00 33.58 2.29
7713 12528 0.170339 GCCTTTGGGACGCAATGTAC 59.830 55.000 5.70 0.18 33.58 2.90
7714 12529 1.821216 CCTTTGGGACGCAATGTACT 58.179 50.000 5.70 0.00 33.58 2.73
7715 12530 1.737793 CCTTTGGGACGCAATGTACTC 59.262 52.381 5.70 0.00 33.58 2.59
7716 12531 1.737793 CTTTGGGACGCAATGTACTCC 59.262 52.381 5.70 0.00 0.00 3.85
7718 12533 1.217244 GGGACGCAATGTACTCCGT 59.783 57.895 0.00 0.00 36.53 4.69
7719 12534 0.804933 GGGACGCAATGTACTCCGTC 60.805 60.000 14.96 14.96 46.60 4.79
7720 12535 3.411808 GACGCAATGTACTCCGTCA 57.588 52.632 17.00 0.00 46.57 4.35
7721 12536 1.922570 GACGCAATGTACTCCGTCAT 58.077 50.000 17.00 0.00 46.57 3.06
7722 12537 1.852895 GACGCAATGTACTCCGTCATC 59.147 52.381 17.00 0.00 46.57 2.92
7723 12538 0.846401 CGCAATGTACTCCGTCATCG 59.154 55.000 0.00 0.00 0.00 3.84
7737 12552 0.526211 TCATCGGTGACTCTTGGACG 59.474 55.000 0.00 0.00 0.00 4.79
7738 12553 0.243907 CATCGGTGACTCTTGGACGT 59.756 55.000 0.00 0.00 0.00 4.34
7739 12554 0.526662 ATCGGTGACTCTTGGACGTC 59.473 55.000 7.13 7.13 0.00 4.34
7740 12555 1.442184 CGGTGACTCTTGGACGTCG 60.442 63.158 9.92 0.00 32.93 5.12
7741 12556 1.733399 GGTGACTCTTGGACGTCGC 60.733 63.158 9.92 3.20 39.32 5.19
7742 12557 1.733399 GTGACTCTTGGACGTCGCC 60.733 63.158 9.92 0.00 35.27 5.54
7743 12558 1.901948 TGACTCTTGGACGTCGCCT 60.902 57.895 9.92 0.00 32.93 5.52
7744 12559 1.289380 GACTCTTGGACGTCGCCTT 59.711 57.895 9.92 0.00 0.00 4.35
7745 12560 0.319641 GACTCTTGGACGTCGCCTTT 60.320 55.000 9.92 0.00 0.00 3.11
7749 12564 0.319555 CTTGGACGTCGCCTTTCTCA 60.320 55.000 9.92 0.00 0.00 3.27
7754 12569 1.179814 ACGTCGCCTTTCTCAGGTCT 61.180 55.000 0.00 0.00 46.07 3.85
7763 12578 3.181450 CCTTTCTCAGGTCTGACTGGTTT 60.181 47.826 7.85 0.00 37.99 3.27
7764 12579 4.455606 CTTTCTCAGGTCTGACTGGTTTT 58.544 43.478 7.85 0.00 38.98 2.43
7778 12593 1.480137 TGGTTTTTGCTGTCCACTTGG 59.520 47.619 0.00 0.00 0.00 3.61
7781 12596 1.733402 TTTTGCTGTCCACTTGGCGG 61.733 55.000 0.00 0.00 34.44 6.13
7783 12598 2.594592 GCTGTCCACTTGGCGGTT 60.595 61.111 0.00 0.00 34.44 4.44
7784 12599 2.193536 GCTGTCCACTTGGCGGTTT 61.194 57.895 0.00 0.00 34.44 3.27
7785 12600 1.654220 CTGTCCACTTGGCGGTTTG 59.346 57.895 0.00 0.00 34.44 2.93
7786 12601 1.795170 CTGTCCACTTGGCGGTTTGG 61.795 60.000 0.00 0.00 34.44 3.28
7788 12603 2.520741 CCACTTGGCGGTTTGGGT 60.521 61.111 0.00 0.00 0.00 4.51
7789 12604 2.727544 CACTTGGCGGTTTGGGTG 59.272 61.111 0.00 0.00 0.00 4.61
7790 12605 2.520741 ACTTGGCGGTTTGGGTGG 60.521 61.111 0.00 0.00 0.00 4.61
7791 12606 2.203422 CTTGGCGGTTTGGGTGGA 60.203 61.111 0.00 0.00 0.00 4.02
7792 12607 2.519780 TTGGCGGTTTGGGTGGAC 60.520 61.111 0.00 0.00 0.00 4.02
7793 12608 4.939368 TGGCGGTTTGGGTGGACG 62.939 66.667 0.00 0.00 0.00 4.79
7795 12610 4.941309 GCGGTTTGGGTGGACGGT 62.941 66.667 0.00 0.00 0.00 4.83
7816 12631 3.880047 ACGTCGATCTAATTTGGTCCA 57.120 42.857 0.00 0.00 0.00 4.02
7829 12645 3.701532 TTGGTCCAATGTTTTGTCGTC 57.298 42.857 0.00 0.00 0.00 4.20
7833 12649 3.304458 GGTCCAATGTTTTGTCGTCCTTC 60.304 47.826 0.00 0.00 0.00 3.46
7859 12675 6.472686 GAGTATCCTACTTTGGATGTGACT 57.527 41.667 6.32 2.42 45.58 3.41
7862 12678 2.496070 TCCTACTTTGGATGTGACTCGG 59.504 50.000 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 5.500610 GCAAATGCACGCATAAAATAACCAG 60.501 40.000 4.68 0.00 41.59 4.00
68 69 3.908382 GCTTACATATAGCAAATGCACGC 59.092 43.478 8.28 0.00 45.16 5.34
92 93 8.319057 TGGTTATGATGTAACAGAATCTAGGT 57.681 34.615 0.00 0.00 0.00 3.08
438 453 2.826979 TTCGTGCTAGATCTCGACAC 57.173 50.000 0.00 5.56 32.68 3.67
519 547 3.937706 CCCTCAGCTTGAAATCTACACTG 59.062 47.826 0.00 0.00 0.00 3.66
521 549 4.207891 TCCCTCAGCTTGAAATCTACAC 57.792 45.455 0.00 0.00 0.00 2.90
629 1118 5.537300 TGCATTGCCCACTAAAGTAAAAA 57.463 34.783 6.12 0.00 0.00 1.94
639 1128 1.538687 GGAAGCTTGCATTGCCCACT 61.539 55.000 13.73 0.00 0.00 4.00
641 1130 1.120184 TTGGAAGCTTGCATTGCCCA 61.120 50.000 22.04 9.11 0.00 5.36
718 1207 6.864165 GGAGACATCAGTTCGATTAATACTCC 59.136 42.308 0.00 0.00 29.21 3.85
719 1208 7.426410 TGGAGACATCAGTTCGATTAATACTC 58.574 38.462 0.00 0.00 33.40 2.59
720 1209 7.068839 ACTGGAGACATCAGTTCGATTAATACT 59.931 37.037 0.00 0.00 42.17 2.12
721 1210 7.203910 ACTGGAGACATCAGTTCGATTAATAC 58.796 38.462 0.00 0.00 42.17 1.89
722 1211 7.348080 ACTGGAGACATCAGTTCGATTAATA 57.652 36.000 0.00 0.00 42.17 0.98
723 1212 6.227298 ACTGGAGACATCAGTTCGATTAAT 57.773 37.500 0.00 0.00 42.17 1.40
724 1213 5.651530 GACTGGAGACATCAGTTCGATTAA 58.348 41.667 0.00 0.00 44.51 1.40
725 1214 4.201920 CGACTGGAGACATCAGTTCGATTA 60.202 45.833 0.00 0.00 44.51 1.75
726 1215 3.428180 CGACTGGAGACATCAGTTCGATT 60.428 47.826 0.00 0.00 44.51 3.34
745 1235 4.842139 AAAATCTGCTTATCACGTCGAC 57.158 40.909 5.18 5.18 0.00 4.20
857 1347 7.506114 AGATGTTCCTATTTTGGCGTTCTATA 58.494 34.615 0.00 0.00 0.00 1.31
858 1348 6.357367 AGATGTTCCTATTTTGGCGTTCTAT 58.643 36.000 0.00 0.00 0.00 1.98
956 1446 6.130692 AGGAAGGTTTTATAGGGTTTTCGA 57.869 37.500 0.00 0.00 0.00 3.71
957 1447 5.356190 GGAGGAAGGTTTTATAGGGTTTTCG 59.644 44.000 0.00 0.00 0.00 3.46
958 1448 5.655532 GGGAGGAAGGTTTTATAGGGTTTTC 59.344 44.000 0.00 0.00 0.00 2.29
959 1449 5.586877 GGGAGGAAGGTTTTATAGGGTTTT 58.413 41.667 0.00 0.00 0.00 2.43
960 1450 4.324797 CGGGAGGAAGGTTTTATAGGGTTT 60.325 45.833 0.00 0.00 0.00 3.27
1094 1593 1.621514 GGTAGGGATTGGTGGGGGT 60.622 63.158 0.00 0.00 0.00 4.95
1164 1663 1.214853 GACGAAGAAGGGGGTCGAC 59.785 63.158 7.13 7.13 38.16 4.20
1398 1897 3.006728 TCCCCGGCCTTGGTGTAG 61.007 66.667 0.00 0.00 0.00 2.74
1642 2141 2.741145 AGATGTGTCCTAGACAGACCC 58.259 52.381 0.00 0.00 43.57 4.46
1643 2142 4.783055 TCTAGATGTGTCCTAGACAGACC 58.217 47.826 0.00 0.00 43.57 3.85
1644 2143 6.312399 CATCTAGATGTGTCCTAGACAGAC 57.688 45.833 22.42 0.00 43.57 3.51
1671 2170 9.201127 CATGAGGTTAGATGTGACATAACTATG 57.799 37.037 10.13 8.92 39.55 2.23
1672 2171 8.928448 ACATGAGGTTAGATGTGACATAACTAT 58.072 33.333 10.13 1.74 31.47 2.12
1674 2173 7.187824 ACATGAGGTTAGATGTGACATAACT 57.812 36.000 10.13 0.00 31.47 2.24
1675 2174 6.480320 GGACATGAGGTTAGATGTGACATAAC 59.520 42.308 0.00 0.00 32.85 1.89
1676 2175 6.156083 TGGACATGAGGTTAGATGTGACATAA 59.844 38.462 0.00 0.00 32.85 1.90
1678 2177 4.471025 TGGACATGAGGTTAGATGTGACAT 59.529 41.667 0.00 0.00 32.85 3.06
1679 2178 3.837731 TGGACATGAGGTTAGATGTGACA 59.162 43.478 0.00 0.00 32.85 3.58
1680 2179 4.081420 AGTGGACATGAGGTTAGATGTGAC 60.081 45.833 0.00 0.00 32.85 3.67
1681 2180 4.096681 AGTGGACATGAGGTTAGATGTGA 58.903 43.478 0.00 0.00 32.85 3.58
1682 2181 4.478206 AGTGGACATGAGGTTAGATGTG 57.522 45.455 0.00 0.00 32.85 3.21
1683 2182 7.069986 AGTATAGTGGACATGAGGTTAGATGT 58.930 38.462 0.00 0.00 35.46 3.06
1684 2183 7.531857 AGTATAGTGGACATGAGGTTAGATG 57.468 40.000 0.00 0.00 0.00 2.90
1685 2184 7.565398 ACAAGTATAGTGGACATGAGGTTAGAT 59.435 37.037 0.00 0.00 0.00 1.98
1686 2185 6.895756 ACAAGTATAGTGGACATGAGGTTAGA 59.104 38.462 0.00 0.00 0.00 2.10
1687 2186 7.068839 AGACAAGTATAGTGGACATGAGGTTAG 59.931 40.741 0.00 0.00 0.00 2.34
1688 2187 6.895756 AGACAAGTATAGTGGACATGAGGTTA 59.104 38.462 0.00 0.00 0.00 2.85
1689 2188 5.721960 AGACAAGTATAGTGGACATGAGGTT 59.278 40.000 0.00 0.00 0.00 3.50
1690 2189 5.273208 AGACAAGTATAGTGGACATGAGGT 58.727 41.667 0.00 0.00 0.00 3.85
1692 2191 9.823647 AAAATAGACAAGTATAGTGGACATGAG 57.176 33.333 0.00 0.00 0.00 2.90
1717 2216 1.407258 CAGCAACAAGGGACCGAAAAA 59.593 47.619 0.00 0.00 0.00 1.94
1718 2217 1.028905 CAGCAACAAGGGACCGAAAA 58.971 50.000 0.00 0.00 0.00 2.29
1719 2218 1.452145 GCAGCAACAAGGGACCGAAA 61.452 55.000 0.00 0.00 0.00 3.46
1721 2220 2.281484 GCAGCAACAAGGGACCGA 60.281 61.111 0.00 0.00 0.00 4.69
1722 2221 3.726517 CGCAGCAACAAGGGACCG 61.727 66.667 0.00 0.00 0.00 4.79
1723 2222 0.887387 TAACGCAGCAACAAGGGACC 60.887 55.000 0.00 0.00 0.00 4.46
1724 2223 1.165270 ATAACGCAGCAACAAGGGAC 58.835 50.000 0.00 0.00 0.00 4.46
1726 2225 2.288152 ACAAATAACGCAGCAACAAGGG 60.288 45.455 0.00 0.00 0.00 3.95
1727 2226 2.725723 CACAAATAACGCAGCAACAAGG 59.274 45.455 0.00 0.00 0.00 3.61
1728 2227 3.626977 TCACAAATAACGCAGCAACAAG 58.373 40.909 0.00 0.00 0.00 3.16
1729 2228 3.699779 TCACAAATAACGCAGCAACAA 57.300 38.095 0.00 0.00 0.00 2.83
1730 2229 3.699779 TTCACAAATAACGCAGCAACA 57.300 38.095 0.00 0.00 0.00 3.33
1731 2230 4.041723 AGTTTCACAAATAACGCAGCAAC 58.958 39.130 0.00 0.00 0.00 4.17
1733 2232 3.980646 AGTTTCACAAATAACGCAGCA 57.019 38.095 0.00 0.00 0.00 4.41
1734 2233 6.140110 TCTAAAGTTTCACAAATAACGCAGC 58.860 36.000 0.00 0.00 0.00 5.25
1735 2234 7.803189 ACATCTAAAGTTTCACAAATAACGCAG 59.197 33.333 0.00 0.00 0.00 5.18
1737 2236 7.801315 TCACATCTAAAGTTTCACAAATAACGC 59.199 33.333 0.00 0.00 0.00 4.84
1738 2237 9.103048 GTCACATCTAAAGTTTCACAAATAACG 57.897 33.333 0.00 0.00 0.00 3.18
1739 2238 9.944663 TGTCACATCTAAAGTTTCACAAATAAC 57.055 29.630 0.00 0.00 0.00 1.89
1743 2242 7.502226 AGGATGTCACATCTAAAGTTTCACAAA 59.498 33.333 17.46 0.00 0.00 2.83
1744 2243 6.998074 AGGATGTCACATCTAAAGTTTCACAA 59.002 34.615 17.46 0.00 0.00 3.33
1745 2244 6.533730 AGGATGTCACATCTAAAGTTTCACA 58.466 36.000 17.46 0.00 0.00 3.58
1746 2245 7.440523 AAGGATGTCACATCTAAAGTTTCAC 57.559 36.000 17.46 0.00 0.00 3.18
1777 2276 9.376075 ACAGTTTGTCTAATTCACATCTAGATG 57.624 33.333 27.63 27.63 44.15 2.90
1778 2277 9.950496 AACAGTTTGTCTAATTCACATCTAGAT 57.050 29.630 0.00 0.00 0.00 1.98
1780 2279 9.429359 AGAACAGTTTGTCTAATTCACATCTAG 57.571 33.333 0.00 0.00 0.00 2.43
1782 2281 9.209175 GTAGAACAGTTTGTCTAATTCACATCT 57.791 33.333 0.00 0.00 0.00 2.90
1793 2292 9.826574 TTTACAGTTATGTAGAACAGTTTGTCT 57.173 29.630 0.00 0.00 42.72 3.41
1794 2293 9.859692 GTTTACAGTTATGTAGAACAGTTTGTC 57.140 33.333 0.00 0.00 42.72 3.18
1795 2294 9.386010 TGTTTACAGTTATGTAGAACAGTTTGT 57.614 29.630 9.80 0.00 42.72 2.83
1796 2295 9.864034 CTGTTTACAGTTATGTAGAACAGTTTG 57.136 33.333 20.54 8.71 44.07 2.93
1846 2446 0.947244 CTGGGCGGTATCAATTCAGC 59.053 55.000 0.00 0.00 0.00 4.26
1848 2448 1.557371 TCACTGGGCGGTATCAATTCA 59.443 47.619 0.00 0.00 0.00 2.57
1969 2569 2.882761 GGTAACACCTGGAAAGTGAACC 59.117 50.000 0.00 4.55 38.63 3.62
2105 2705 5.163612 GGAGTCATTGAAATAAGCAGGAACC 60.164 44.000 0.00 0.00 0.00 3.62
2506 3106 2.165641 TGTAACCTGCGTATCTGGACAG 59.834 50.000 0.00 0.00 37.25 3.51
2602 3317 8.786826 ATTTTCCATAAGACAGACGAATGTTA 57.213 30.769 0.00 0.00 32.25 2.41
2784 3501 5.699143 AGAAAGAGGGATTGGTGGAATATG 58.301 41.667 0.00 0.00 0.00 1.78
2798 3606 4.384647 CCATGTTAGAAGGGAGAAAGAGGG 60.385 50.000 0.00 0.00 0.00 4.30
2804 3612 7.176865 CGATAGATACCATGTTAGAAGGGAGAA 59.823 40.741 0.00 0.00 39.76 2.87
3271 4199 3.731728 TGTGGATGGGCAGCCCTC 61.732 66.667 31.51 23.52 45.70 4.30
3389 4325 1.400846 GATGAAGTCGCTGAGTACGGA 59.599 52.381 0.00 0.00 0.00 4.69
4153 6929 5.163045 GGAGAAAGAGGGATTGGTGGAATAT 60.163 44.000 0.00 0.00 0.00 1.28
4154 6930 4.166144 GGAGAAAGAGGGATTGGTGGAATA 59.834 45.833 0.00 0.00 0.00 1.75
4155 6931 3.053320 GGAGAAAGAGGGATTGGTGGAAT 60.053 47.826 0.00 0.00 0.00 3.01
4157 6933 1.916181 GGAGAAAGAGGGATTGGTGGA 59.084 52.381 0.00 0.00 0.00 4.02
4159 6935 1.918957 AGGGAGAAAGAGGGATTGGTG 59.081 52.381 0.00 0.00 0.00 4.17
4162 6938 5.045578 TGTTAGAAGGGAGAAAGAGGGATTG 60.046 44.000 0.00 0.00 0.00 2.67
4165 6941 3.838903 GTGTTAGAAGGGAGAAAGAGGGA 59.161 47.826 0.00 0.00 0.00 4.20
4166 6942 3.841255 AGTGTTAGAAGGGAGAAAGAGGG 59.159 47.826 0.00 0.00 0.00 4.30
4237 7013 7.366847 ACAGAACATGCTTCCACTAGTATAT 57.633 36.000 0.00 0.00 0.00 0.86
4289 7065 4.701956 AATAGGTTTCCATTGCTGAACG 57.298 40.909 0.00 0.00 0.00 3.95
4339 7115 8.602472 ACTAGAGAGGACAGATGTCTTAAAAT 57.398 34.615 12.43 0.00 44.20 1.82
4568 7351 1.293179 CACACGAGACAGATGGGCA 59.707 57.895 0.00 0.00 0.00 5.36
4592 7375 7.548097 AGATGAAGCAGACTAAATAAGTTCGA 58.452 34.615 0.00 0.00 39.07 3.71
4594 7377 8.940952 ACAAGATGAAGCAGACTAAATAAGTTC 58.059 33.333 0.00 0.00 39.07 3.01
4665 7448 3.496130 CAGGCAAGACTACAAACACAGAG 59.504 47.826 0.00 0.00 0.00 3.35
4688 7471 7.294017 ACATCCCTTTTGCATTCCTATTATG 57.706 36.000 0.00 0.00 0.00 1.90
4765 7548 5.489792 AGACTAGAACCAGAGAATTGCAA 57.510 39.130 0.00 0.00 0.00 4.08
4822 7607 7.527568 AAAGCGTAAGATACTTAGAGCCTAT 57.472 36.000 0.00 0.00 43.02 2.57
4852 7637 5.308237 AGATGTTATCTGTAACCAGGGATCC 59.692 44.000 1.92 1.92 39.55 3.36
4986 7771 3.105283 AGGGCGAAGGTTATCAGTAAGT 58.895 45.455 0.00 0.00 0.00 2.24
5002 7787 1.970917 GACTCATGCGAACAAGGGCG 61.971 60.000 0.00 0.00 0.00 6.13
5013 7798 1.818642 AAGGTGCTGAAGACTCATGC 58.181 50.000 0.00 0.00 0.00 4.06
5040 7826 9.346005 TGTGAGAACATATAAATCATGCAGAAT 57.654 29.630 0.00 0.00 0.00 2.40
5079 7865 3.508793 CAGCCAATCAACAATTCTCTGGT 59.491 43.478 0.00 0.00 0.00 4.00
5275 8061 9.667107 CCAATAACAGGTTTAGAAACTGAGATA 57.333 33.333 12.30 3.70 38.89 1.98
5421 8207 6.558771 TCATCCAAATATTAACATGAGGCG 57.441 37.500 0.00 0.00 0.00 5.52
5564 8351 1.070758 TGTCCTCAGCCTGAAAGACAC 59.929 52.381 18.46 3.19 35.85 3.67
5635 8422 1.442769 CACCCACAAGAATCACCTCG 58.557 55.000 0.00 0.00 0.00 4.63
5758 8545 2.936919 TTCATGAACTCACCTGCACT 57.063 45.000 3.38 0.00 0.00 4.40
5898 8775 4.498682 GCAATTTCACTTTGAGAGCTGTGT 60.499 41.667 0.00 0.00 0.00 3.72
5920 8797 7.655732 ACAAACAGTTTACCATATTCTTTTGGC 59.344 33.333 0.00 0.00 36.41 4.52
6002 8879 5.732633 ACATATGAGAGATAATCAGCCAGC 58.267 41.667 10.38 0.00 0.00 4.85
6035 8912 6.036517 CAGACAGTTCAATCTAGCATGTTACC 59.963 42.308 0.00 0.00 0.00 2.85
6106 8983 3.183793 AGCACAATATCGCTCACATCA 57.816 42.857 0.00 0.00 31.16 3.07
6199 9076 1.095130 TGGAGGTAGGGAGGGTTGTA 58.905 55.000 0.00 0.00 0.00 2.41
6502 9379 7.713764 ACACTATGCAAATTGAAAAGTTTCC 57.286 32.000 0.00 0.00 27.89 3.13
6519 9397 7.383102 AGGATCAGCAAAGTTTTACACTATG 57.617 36.000 0.00 0.00 32.94 2.23
6983 9873 2.098607 CACTTGTTGCATCATGCCCTAG 59.901 50.000 7.30 6.73 44.23 3.02
6988 9878 4.095334 TCATACTCACTTGTTGCATCATGC 59.905 41.667 1.35 1.35 45.29 4.06
7050 9940 2.414691 GGTCTCAATCCAAAGAAAGCGC 60.415 50.000 0.00 0.00 0.00 5.92
7104 9994 4.349636 TGAACTCTCCAAACCTCCAACATA 59.650 41.667 0.00 0.00 0.00 2.29
7144 10034 4.628333 CCAACAAGCAAAAGCCAATCTATG 59.372 41.667 0.00 0.00 0.00 2.23
7171 10062 3.646715 CAAGGCCAAGGGGTCGGA 61.647 66.667 5.01 0.00 46.12 4.55
7477 12202 6.205101 AGGAATTCAACTGCATCAATTCTC 57.795 37.500 7.93 8.53 36.11 2.87
7478 12203 6.014840 ACAAGGAATTCAACTGCATCAATTCT 60.015 34.615 7.93 0.00 36.11 2.40
7480 12205 6.105397 ACAAGGAATTCAACTGCATCAATT 57.895 33.333 7.93 0.00 0.00 2.32
7483 12208 5.048083 GGTAACAAGGAATTCAACTGCATCA 60.048 40.000 7.93 0.00 0.00 3.07
7484 12209 5.402398 GGTAACAAGGAATTCAACTGCATC 58.598 41.667 7.93 0.00 0.00 3.91
7485 12210 5.391312 GGTAACAAGGAATTCAACTGCAT 57.609 39.130 7.93 0.00 0.00 3.96
7486 12211 4.846779 GGTAACAAGGAATTCAACTGCA 57.153 40.909 7.93 0.00 0.00 4.41
7532 12315 3.555168 CGGAGTCAAAACTAGCAGAGGTT 60.555 47.826 0.00 0.00 36.27 3.50
7576 12391 2.087009 CCACCGAGACGCTTCGAAC 61.087 63.158 10.35 0.00 43.03 3.95
7579 12394 2.087009 GTTCCACCGAGACGCTTCG 61.087 63.158 2.47 2.47 40.18 3.79
7617 12432 0.527113 CGCTGAAATCACCAATGCCA 59.473 50.000 0.00 0.00 0.00 4.92
7671 12486 2.480224 TACGCACGGTAGCATAGTTC 57.520 50.000 0.00 0.00 0.00 3.01
7672 12487 2.359848 TCATACGCACGGTAGCATAGTT 59.640 45.455 0.00 0.00 33.84 2.24
7673 12488 1.951602 TCATACGCACGGTAGCATAGT 59.048 47.619 0.00 0.00 33.84 2.12
7674 12489 2.585845 CTCATACGCACGGTAGCATAG 58.414 52.381 0.00 0.00 33.84 2.23
7675 12490 1.335597 GCTCATACGCACGGTAGCATA 60.336 52.381 0.00 0.00 33.84 3.14
7676 12491 0.597637 GCTCATACGCACGGTAGCAT 60.598 55.000 0.00 0.00 33.84 3.79
7677 12492 1.226859 GCTCATACGCACGGTAGCA 60.227 57.895 0.00 0.00 33.84 3.49
7680 12495 0.533491 AAAGGCTCATACGCACGGTA 59.467 50.000 0.00 0.00 35.11 4.02
7681 12496 1.019278 CAAAGGCTCATACGCACGGT 61.019 55.000 0.00 0.00 0.00 4.83
7683 12498 1.705337 CCCAAAGGCTCATACGCACG 61.705 60.000 0.00 0.00 0.00 5.34
7684 12499 0.392461 TCCCAAAGGCTCATACGCAC 60.392 55.000 0.00 0.00 0.00 5.34
7685 12500 0.392461 GTCCCAAAGGCTCATACGCA 60.392 55.000 0.00 0.00 0.00 5.24
7686 12501 1.429148 CGTCCCAAAGGCTCATACGC 61.429 60.000 0.00 0.00 0.00 4.42
7687 12502 1.429148 GCGTCCCAAAGGCTCATACG 61.429 60.000 0.00 0.00 35.85 3.06
7688 12503 0.392461 TGCGTCCCAAAGGCTCATAC 60.392 55.000 0.00 0.00 39.53 2.39
7689 12504 0.326595 TTGCGTCCCAAAGGCTCATA 59.673 50.000 0.00 0.00 39.53 2.15
7690 12505 0.323725 ATTGCGTCCCAAAGGCTCAT 60.324 50.000 0.00 0.00 39.53 2.90
7693 12508 0.037590 TACATTGCGTCCCAAAGGCT 59.962 50.000 0.00 0.00 39.53 4.58
7694 12509 0.170339 GTACATTGCGTCCCAAAGGC 59.830 55.000 0.00 0.00 36.92 4.35
7696 12511 1.737793 GGAGTACATTGCGTCCCAAAG 59.262 52.381 0.00 0.00 36.92 2.77
7697 12512 1.816074 GGAGTACATTGCGTCCCAAA 58.184 50.000 0.00 0.00 36.92 3.28
7700 12515 1.217244 ACGGAGTACATTGCGTCCC 59.783 57.895 0.00 0.00 41.38 4.46
7701 12516 4.904466 ACGGAGTACATTGCGTCC 57.096 55.556 0.00 0.00 41.38 4.79
7718 12533 0.526211 CGTCCAAGAGTCACCGATGA 59.474 55.000 0.00 0.00 0.00 2.92
7719 12534 0.243907 ACGTCCAAGAGTCACCGATG 59.756 55.000 0.00 0.00 0.00 3.84
7720 12535 0.526662 GACGTCCAAGAGTCACCGAT 59.473 55.000 3.51 0.00 37.34 4.18
7721 12536 1.848932 CGACGTCCAAGAGTCACCGA 61.849 60.000 10.58 0.00 37.23 4.69
7722 12537 1.442184 CGACGTCCAAGAGTCACCG 60.442 63.158 10.58 0.00 37.23 4.94
7723 12538 1.733399 GCGACGTCCAAGAGTCACC 60.733 63.158 10.58 0.00 37.23 4.02
7724 12539 1.733399 GGCGACGTCCAAGAGTCAC 60.733 63.158 10.58 0.00 37.23 3.67
7725 12540 1.461091 AAGGCGACGTCCAAGAGTCA 61.461 55.000 10.58 0.00 37.23 3.41
7726 12541 0.319641 AAAGGCGACGTCCAAGAGTC 60.320 55.000 10.58 0.00 0.00 3.36
7727 12542 0.319641 GAAAGGCGACGTCCAAGAGT 60.320 55.000 10.58 0.00 0.00 3.24
7728 12543 0.038159 AGAAAGGCGACGTCCAAGAG 60.038 55.000 10.58 0.00 0.00 2.85
7729 12544 0.038526 GAGAAAGGCGACGTCCAAGA 60.039 55.000 10.58 0.00 0.00 3.02
7730 12545 0.319555 TGAGAAAGGCGACGTCCAAG 60.320 55.000 10.58 0.00 0.00 3.61
7731 12546 0.319555 CTGAGAAAGGCGACGTCCAA 60.320 55.000 10.58 0.00 0.00 3.53
7732 12547 1.289066 CTGAGAAAGGCGACGTCCA 59.711 57.895 10.58 0.00 0.00 4.02
7733 12548 1.446272 CCTGAGAAAGGCGACGTCC 60.446 63.158 10.58 2.55 39.93 4.79
7734 12549 4.170723 CCTGAGAAAGGCGACGTC 57.829 61.111 5.18 5.18 39.93 4.34
7742 12557 3.760580 AACCAGTCAGACCTGAGAAAG 57.239 47.619 0.00 0.00 40.75 2.62
7743 12558 4.503714 AAAACCAGTCAGACCTGAGAAA 57.496 40.909 0.00 0.00 40.75 2.52
7744 12559 4.199310 CAAAAACCAGTCAGACCTGAGAA 58.801 43.478 0.00 0.00 40.75 2.87
7745 12560 3.808728 CAAAAACCAGTCAGACCTGAGA 58.191 45.455 0.00 0.00 40.75 3.27
7749 12564 2.301346 CAGCAAAAACCAGTCAGACCT 58.699 47.619 0.00 0.00 0.00 3.85
7751 12566 2.033424 GGACAGCAAAAACCAGTCAGAC 59.967 50.000 0.00 0.00 0.00 3.51
7754 12569 1.748493 GTGGACAGCAAAAACCAGTCA 59.252 47.619 0.00 0.00 32.89 3.41
7763 12578 2.192861 CCGCCAAGTGGACAGCAAA 61.193 57.895 0.18 0.00 34.74 3.68
7764 12579 2.594303 CCGCCAAGTGGACAGCAA 60.594 61.111 0.18 0.00 34.74 3.91
7778 12593 3.534054 TACCGTCCACCCAAACCGC 62.534 63.158 0.00 0.00 0.00 5.68
7781 12596 1.069596 ACGTACCGTCCACCCAAAC 59.930 57.895 0.00 0.00 33.69 2.93
7791 12606 3.129287 ACCAAATTAGATCGACGTACCGT 59.871 43.478 0.00 0.00 45.10 4.83
7792 12607 3.699067 ACCAAATTAGATCGACGTACCG 58.301 45.455 0.00 0.00 0.00 4.02
7793 12608 4.047142 GGACCAAATTAGATCGACGTACC 58.953 47.826 0.00 0.00 0.00 3.34
7794 12609 4.675510 TGGACCAAATTAGATCGACGTAC 58.324 43.478 0.00 0.00 0.00 3.67
7795 12610 4.987408 TGGACCAAATTAGATCGACGTA 57.013 40.909 0.00 0.00 0.00 3.57
7800 12615 7.090173 ACAAAACATTGGACCAAATTAGATCG 58.910 34.615 11.82 0.00 0.00 3.69
7813 12628 2.882137 GGAAGGACGACAAAACATTGGA 59.118 45.455 0.00 0.00 0.00 3.53
7940 12756 3.817647 GTGTGAGTTGGAGCAGAAGAATT 59.182 43.478 0.00 0.00 0.00 2.17
7941 12757 3.072184 AGTGTGAGTTGGAGCAGAAGAAT 59.928 43.478 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.