AutoCloner

Multiple sequence alignment - TraesCS1D01G130300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G130300	chr1D	100.000	2576	0	0	1	2576	143440211	143437636	0.000000e+00	4758.0
1	TraesCS1D01G130300	chr1D	91.489	47	4	0	1996	2042	482898216	482898262	5.950000e-07	65.8
2	TraesCS1D01G130300	chr1A	95.112	982	15	7	729	1681	145988526	145989503	0.000000e+00	1517.0
3	TraesCS1D01G130300	chr1A	94.444	324	13	2	1679	2000	145989546	145989866	6.400000e-136	494.0
4	TraesCS1D01G130300	chr1A	83.130	575	60	23	2026	2576	145989857	145990418	8.280000e-135	490.0
5	TraesCS1D01G130300	chr1A	95.556	45	1	1	1996	2040	44475903	44475860	1.280000e-08	71.3
6	TraesCS1D01G130300	chr1B	95.643	941	17	4	764	1681	193004699	193003760	0.000000e+00	1489.0
7	TraesCS1D01G130300	chr1B	84.810	632	80	10	1	620	630254793	630255420	2.820000e-174	621.0
8	TraesCS1D01G130300	chr1B	88.372	430	33	9	2153	2574	193003160	193002740	3.830000e-138	501.0
9	TraesCS1D01G130300	chr1B	97.884	189	4	0	1815	2003	193003485	193003297	6.870000e-86	327.0
10	TraesCS1D01G130300	chr1B	95.139	144	4	2	622	764	193004875	193004734	9.280000e-55	224.0
11	TraesCS1D01G130300	chr1B	94.030	134	6	1	1679	1810	193003724	193003591	4.350000e-48	202.0
12	TraesCS1D01G130300	chr4D	87.081	627	66	9	2	620	477919669	477919050	0.000000e+00	695.0
13	TraesCS1D01G130300	chr7D	86.963	629	67	14	1	619	186322087	186321464	0.000000e+00	693.0
14	TraesCS1D01G130300	chr7D	85.056	629	71	17	1	617	385705064	385705681	1.010000e-173	619.0
15	TraesCS1D01G130300	chr7D	84.211	627	80	16	1	617	251353584	251352967	2.210000e-165	592.0
16	TraesCS1D01G130300	chr7D	80.967	331	50	10	2256	2576	187206269	187205942	1.530000e-62	250.0
17	TraesCS1D01G130300	chr5D	87.417	604	65	6	21	617	34809340	34808741	0.000000e+00	684.0
18	TraesCS1D01G130300	chr5D	78.448	348	58	12	2199	2543	500196391	500196058	7.220000e-51	211.0
19	TraesCS1D01G130300	chr5A	86.164	636	67	8	1	617	23587919	23588552	0.000000e+00	667.0
20	TraesCS1D01G130300	chr5A	83.784	629	82	12	1	617	615920359	615919739	1.720000e-161	579.0
21	TraesCS1D01G130300	chr5A	93.617	47	1	2	1996	2041	706322182	706322227	4.600000e-08	69.4
22	TraesCS1D01G130300	chr5A	97.222	36	1	0	1996	2031	71460353	71460388	7.700000e-06	62.1
23	TraesCS1D01G130300	chr3D	84.873	628	73	15	1	619	274448270	274448884	4.710000e-172	614.0
24	TraesCS1D01G130300	chr5B	80.078	256	37	11	2314	2565	621487356	621487111	7.320000e-41	178.0
25	TraesCS1D01G130300	chr7A	95.238	42	2	0	1995	2036	119302438	119302397	1.650000e-07	67.6
26	TraesCS1D01G130300	chr3A	95.238	42	0	2	1996	2037	684747434	684747395	5.950000e-07	65.8
27	TraesCS1D01G130300	chr2B	93.182	44	2	1	1996	2039	456336150	456336192	2.140000e-06	63.9
28	TraesCS1D01G130300	chr2A	91.304	46	4	0	1996	2041	59640715	59640670	2.140000e-06	63.9
29	TraesCS1D01G130300	chr2A	89.796	49	3	2	1996	2044	15756003	15755957	7.700000e-06	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G130300	chr1D	143437636	143440211	2575	True	4758.000000	4758	100.000000	1	2576	1	chr1D.!!$R1	2575
1	TraesCS1D01G130300	chr1A	145988526	145990418	1892	False	833.666667	1517	90.895333	729	2576	3	chr1A.!!$F1	1847
2	TraesCS1D01G130300	chr1B	630254793	630255420	627	False	621.000000	621	84.810000	1	620	1	chr1B.!!$F1	619
3	TraesCS1D01G130300	chr1B	193002740	193004875	2135	True	548.600000	1489	94.213600	622	2574	5	chr1B.!!$R1	1952
4	TraesCS1D01G130300	chr4D	477919050	477919669	619	True	695.000000	695	87.081000	2	620	1	chr4D.!!$R1	618
5	TraesCS1D01G130300	chr7D	186321464	186322087	623	True	693.000000	693	86.963000	1	619	1	chr7D.!!$R1	618
6	TraesCS1D01G130300	chr7D	385705064	385705681	617	False	619.000000	619	85.056000	1	617	1	chr7D.!!$F1	616
7	TraesCS1D01G130300	chr7D	251352967	251353584	617	True	592.000000	592	84.211000	1	617	1	chr7D.!!$R3	616
8	TraesCS1D01G130300	chr5D	34808741	34809340	599	True	684.000000	684	87.417000	21	617	1	chr5D.!!$R1	596
9	TraesCS1D01G130300	chr5A	23587919	23588552	633	False	667.000000	667	86.164000	1	617	1	chr5A.!!$F1	616
10	TraesCS1D01G130300	chr5A	615919739	615920359	620	True	579.000000	579	83.784000	1	617	1	chr5A.!!$R1	616
11	TraesCS1D01G130300	chr3D	274448270	274448884	614	False	614.000000	614	84.873000	1	619	1	chr3D.!!$F1	618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
532	571	0.81401	CCGGTGGATTTCGTCATCCC	60.814	60.0	11.6	5.02	42.14	3.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2112	2372	0.032615	TGGTGCCCAAAAAGGACACT	60.033	50.0	0.79	0.0	41.22	3.55	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
45	46	1.003262	GCTTTGCATTGCTCGCGAAA	61.003	50.000	11.33	2.22	32.44	3.46
143	150	2.504244	GAACGCCTCCTCGTCGTG	60.504	66.667	0.00	0.00	42.46	4.35
149	156	1.957562	CCTCCTCGTCGTGTGAGTT	59.042	57.895	0.00	0.00	0.00	3.01
246	259	3.371097	CTGGAGCGCCGGAAAGCTA	62.371	63.158	10.23	4.79	44.69	3.32
267	282	3.322466	CAGGAGCGGGGTTGAGGT	61.322	66.667	0.00	0.00	0.00	3.85
311	328	1.676746	TCGACGAGGGAATGACCTAG	58.323	55.000	0.00	0.00	42.10	3.02
399	434	3.005554	CGAATCTGGAAGTGCAAGATGT	58.994	45.455	0.00	0.00	31.11	3.06
489	528	1.604378	CTGGGTTCGGCCTGAGATT	59.396	57.895	0.00	0.00	37.43	2.40
526	565	2.125673	CGAGCCGGTGGATTTCGT	60.126	61.111	1.90	0.00	0.00	3.85
532	571	0.814010	CCGGTGGATTTCGTCATCCC	60.814	60.000	11.60	5.02	42.14	3.85
620	666	2.288186	CGCGAGTAGAGATGCTCTTACA	59.712	50.000	0.00	0.00	41.50	2.41
686	732	6.312672	TCAAGGATGTGTTGTATCGTGTAATG	59.687	38.462	0.00	0.00	0.00	1.90
687	733	4.570772	AGGATGTGTTGTATCGTGTAATGC	59.429	41.667	0.00	0.00	0.00	3.56
688	734	4.570772	GGATGTGTTGTATCGTGTAATGCT	59.429	41.667	0.00	0.00	0.00	3.79
698	744	4.624336	TCGTGTAATGCTCTCTTCTCTC	57.376	45.455	0.00	0.00	0.00	3.20
707	753	5.233083	TGCTCTCTTCTCTCCAATGAAAA	57.767	39.130	0.00	0.00	0.00	2.29
764	811	2.160219	CACATGCTTGTACACGATGCTT	59.840	45.455	4.73	0.00	33.76	3.91
765	812	2.160219	ACATGCTTGTACACGATGCTTG	59.840	45.455	2.92	11.95	33.16	4.01
767	814	1.798223	TGCTTGTACACGATGCTTGTC	59.202	47.619	3.09	0.00	0.00	3.18
768	815	1.201812	GCTTGTACACGATGCTTGTCG	60.202	52.381	3.09	5.42	46.56	4.35
837	929	1.918800	ACCTAGGCGCATATCCCCC	60.919	63.158	10.83	0.00	0.00	5.40
1161	1273	4.035102	GACCCAAAGGCCCTCGCT	62.035	66.667	0.00	0.00	36.11	4.93
1281	1393	2.437897	CTGCTCTGGCACCCCTTT	59.562	61.111	0.00	0.00	44.28	3.11
1630	1742	4.202010	CGTTGGTTCTTGGTCTGTGAATTT	60.202	41.667	0.00	0.00	0.00	1.82
1672	1784	8.015658	AGCACTCGTTAATTATTTTGTTGAGTC	58.984	33.333	0.00	0.00	32.26	3.36
1682	1839	3.374220	TTTGTTGAGTCGTATCCGTGT	57.626	42.857	0.00	0.00	35.01	4.49
1696	1853	5.575606	CGTATCCGTGTGAAATAAGTGTTCT	59.424	40.000	0.00	0.00	0.00	3.01
1744	1901	3.253432	TCGATGAGACGATGAACTATGGG	59.747	47.826	0.00	0.00	37.37	4.00
1883	2143	1.052287	CAAATTCGTGCGTTGCCTTC	58.948	50.000	0.00	0.00	0.00	3.46
1995	2255	3.381908	TCACGGTTTTGGCAAACACTAAT	59.618	39.130	13.10	2.46	43.76	1.73
1996	2256	4.116238	CACGGTTTTGGCAAACACTAATT	58.884	39.130	13.10	0.00	43.76	1.40
1997	2257	5.067413	TCACGGTTTTGGCAAACACTAATTA	59.933	36.000	13.10	0.00	43.76	1.40
1998	2258	5.749109	CACGGTTTTGGCAAACACTAATTAA	59.251	36.000	13.10	0.00	43.76	1.40
1999	2259	6.255887	CACGGTTTTGGCAAACACTAATTAAA	59.744	34.615	13.10	0.00	43.76	1.52
2000	2260	6.817140	ACGGTTTTGGCAAACACTAATTAAAA	59.183	30.769	13.10	0.00	43.76	1.52
2001	2261	7.333672	ACGGTTTTGGCAAACACTAATTAAAAA	59.666	29.630	13.10	0.00	43.76	1.94
2002	2262	8.338986	CGGTTTTGGCAAACACTAATTAAAAAT	58.661	29.630	13.10	0.00	43.76	1.82
2003	2263	9.658475	GGTTTTGGCAAACACTAATTAAAAATC	57.342	29.630	13.10	0.00	43.76	2.17
2007	2267	9.995003	TTGGCAAACACTAATTAAAAATCATCT	57.005	25.926	0.00	0.00	0.00	2.90
2028	2288	9.591792	TCATCTAGATGTGAATTAGACAAACTG	57.408	33.333	27.80	2.21	39.72	3.16
2029	2289	9.591792	CATCTAGATGTGAATTAGACAAACTGA	57.408	33.333	22.42	0.00	34.23	3.41
2070	2330	9.231297	GCATCTCCAATAGCTACCATATTTTAA	57.769	33.333	0.00	0.00	0.00	1.52
2077	2337	4.134563	AGCTACCATATTTTAAGGCACCG	58.865	43.478	0.00	0.00	0.00	4.94
2102	2362	9.730420	CGAAGGAGGGTGTTATAAAAATAATTG	57.270	33.333	0.00	0.00	0.00	2.32
2123	2383	3.260475	GGCACCAAAAGTGTCCTTTTT	57.740	42.857	0.00	0.00	46.27	1.94
2124	2384	2.935849	GGCACCAAAAGTGTCCTTTTTG	59.064	45.455	4.02	4.02	46.27	2.44
2143	2403	1.800681	GGCACCATAAAGCACCGTC	59.199	57.895	0.00	0.00	0.00	4.79
2150	2410	2.431057	CCATAAAGCACCGTCTCCTAGT	59.569	50.000	0.00	0.00	0.00	2.57
2151	2411	3.635373	CCATAAAGCACCGTCTCCTAGTA	59.365	47.826	0.00	0.00	0.00	1.82
2162	2466	7.434492	CACCGTCTCCTAGTATGTTTTCATAT	58.566	38.462	0.00	0.00	43.49	1.78
2238	2542	8.876275	AACAGATACTACTAAAAACGAACACA	57.124	30.769	0.00	0.00	0.00	3.72
2246	2550	3.963383	AAAAACGAACACAGAGCGAAT	57.037	38.095	0.00	0.00	0.00	3.34
2254	2558	0.578683	CACAGAGCGAATATGGTGCG	59.421	55.000	0.00	0.00	0.00	5.34
2273	2577	0.598065	GGAAACGGCAACAGAAGCAT	59.402	50.000	0.00	0.00	0.00	3.79
2296	2600	3.128589	GTGCTCACCAGAACTTGAAAACA	59.871	43.478	0.00	0.00	0.00	2.83
2458	2773	8.315482	TGGTAATTAGACATATAAGCGCCATAA	58.685	33.333	2.29	0.00	0.00	1.90
2459	2774	8.818057	GGTAATTAGACATATAAGCGCCATAAG	58.182	37.037	2.29	1.81	0.00	1.73
2469	2784	4.718940	AAGCGCCATAAGTAAGCAAAAT	57.281	36.364	2.29	0.00	0.00	1.82
2482	2797	6.875076	AGTAAGCAAAATCTAGTGTATCCGT	58.125	36.000	0.00	0.00	0.00	4.69
2488	2803	6.292919	GCAAAATCTAGTGTATCCGTTCATCC	60.293	42.308	0.00	0.00	0.00	3.51
2501	2816	5.962433	TCCGTTCATCCTCTTACAAGTAAG	58.038	41.667	12.61	12.61	42.86	2.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
143	150	1.416813	CTGCTCGGCGATGAACTCAC	61.417	60.000	11.27	0.00	0.00	3.51
149	156	0.108186	ATTTGTCTGCTCGGCGATGA	60.108	50.000	11.27	6.68	0.00	2.92
229	241	3.371097	CTAGCTTTCCGGCGCTCCA	62.371	63.158	14.60	0.45	37.68	3.86
311	328	2.651945	GCCTACCTAGCCGCTAGC	59.348	66.667	20.33	4.06	44.25	3.42
620	666	7.397221	TCATGACCAATCAATAGAAGAACAGT	58.603	34.615	0.00	0.00	38.69	3.55
686	732	5.879223	TCATTTTCATTGGAGAGAAGAGAGC	59.121	40.000	0.00	0.00	0.00	4.09
687	733	9.263538	CTATCATTTTCATTGGAGAGAAGAGAG	57.736	37.037	0.00	0.00	0.00	3.20
688	734	8.209584	CCTATCATTTTCATTGGAGAGAAGAGA	58.790	37.037	0.00	0.00	0.00	3.10
698	744	8.550710	TTTTTCAAGCCTATCATTTTCATTGG	57.449	30.769	0.00	0.00	0.00	3.16
764	811	1.278127	CCCTAGGCTTCCTTTTCGACA	59.722	52.381	2.05	0.00	34.61	4.35
765	812	1.553704	TCCCTAGGCTTCCTTTTCGAC	59.446	52.381	2.05	0.00	34.61	4.20
767	814	4.127907	GTTATCCCTAGGCTTCCTTTTCG	58.872	47.826	2.05	0.00	34.61	3.46
768	815	5.104485	TCAGTTATCCCTAGGCTTCCTTTTC	60.104	44.000	2.05	0.00	34.61	2.29
837	929	1.098050	GGTATGAAGGCTGGCAAGTG	58.902	55.000	3.38	0.00	0.00	3.16
980	1089	2.373707	GCTGGCTGGAGGTGGAGAT	61.374	63.158	0.00	0.00	0.00	2.75
1281	1393	1.103803	CGAGGAAGACGATGAGGGAA	58.896	55.000	0.00	0.00	0.00	3.97
1630	1742	2.032634	GCTGCGATCCACGGAACAA	61.033	57.895	0.00	0.00	42.47	2.83
1723	1880	3.253432	TCCCATAGTTCATCGTCTCATCG	59.747	47.826	0.00	0.00	0.00	3.84
1744	1901	3.963129	TGGTCACCTGTTCCCAATAATC	58.037	45.455	0.00	0.00	0.00	1.75
1782	1941	9.935682	ATTATACAAGAAACATACAATTGAGCG	57.064	29.630	13.59	1.84	0.00	5.03
1810	1969	5.300286	GTGAGCTAAGCAACCATTAATCCAT	59.700	40.000	0.00	0.00	0.00	3.41
1883	2143	2.124403	GGCCACATCCTGGAGCAG	60.124	66.667	1.52	0.00	43.95	4.24
2002	2262	9.591792	CAGTTTGTCTAATTCACATCTAGATGA	57.408	33.333	34.16	15.19	41.20	2.92
2003	2263	9.591792	TCAGTTTGTCTAATTCACATCTAGATG	57.408	33.333	27.63	27.63	44.15	2.90
2040	2300	3.969976	TGGTAGCTATTGGAGATGCTCTT	59.030	43.478	0.00	0.00	37.02	2.85
2050	2310	7.309194	GGTGCCTTAAAATATGGTAGCTATTGG	60.309	40.741	0.00	0.00	34.72	3.16
2062	2322	4.461198	CCTCCTTCGGTGCCTTAAAATAT	58.539	43.478	0.00	0.00	0.00	1.28
2070	2330	3.322466	CACCCTCCTTCGGTGCCT	61.322	66.667	0.00	0.00	44.10	4.75
2093	2353	7.189397	GGACACTTTTGGTGCCCAATTATTTT	61.189	38.462	7.39	0.00	45.95	1.82
2097	2357	2.630580	GGACACTTTTGGTGCCCAATTA	59.369	45.455	7.39	0.08	45.95	1.40
2110	2370	4.457587	ATGGTGCCCAAAAAGGACACTTT	61.458	43.478	0.79	0.00	41.20	2.66
2111	2371	1.119684	GGTGCCCAAAAAGGACACTT	58.880	50.000	0.79	0.00	41.22	3.16
2112	2372	0.032615	TGGTGCCCAAAAAGGACACT	60.033	50.000	0.79	0.00	41.22	3.55
2113	2373	1.047801	ATGGTGCCCAAAAAGGACAC	58.952	50.000	0.00	0.00	41.22	3.67
2114	2374	2.685106	TATGGTGCCCAAAAAGGACA	57.315	45.000	0.00	0.00	41.22	4.02
2115	2375	3.864540	GCTTTATGGTGCCCAAAAAGGAC	60.865	47.826	0.00	0.00	41.22	3.85
2116	2376	2.301583	GCTTTATGGTGCCCAAAAAGGA	59.698	45.455	0.00	0.00	41.22	3.36
2117	2377	2.038295	TGCTTTATGGTGCCCAAAAAGG	59.962	45.455	0.00	0.00	36.95	3.11
2118	2378	3.066380	GTGCTTTATGGTGCCCAAAAAG	58.934	45.455	0.00	0.00	36.95	2.27
2119	2379	2.224402	GGTGCTTTATGGTGCCCAAAAA	60.224	45.455	0.00	0.00	36.95	1.94
2120	2380	1.346068	GGTGCTTTATGGTGCCCAAAA	59.654	47.619	0.00	1.37	36.95	2.44
2121	2381	0.972883	GGTGCTTTATGGTGCCCAAA	59.027	50.000	0.00	0.00	36.95	3.28
2122	2382	1.247419	CGGTGCTTTATGGTGCCCAA	61.247	55.000	0.00	0.00	36.95	4.12
2123	2383	1.677300	CGGTGCTTTATGGTGCCCA	60.677	57.895	0.00	0.00	38.19	5.36
2124	2384	1.654023	GACGGTGCTTTATGGTGCCC	61.654	60.000	0.00	0.00	0.00	5.36
2125	2385	0.676782	AGACGGTGCTTTATGGTGCC	60.677	55.000	0.00	0.00	0.00	5.01
2126	2386	0.727398	GAGACGGTGCTTTATGGTGC	59.273	55.000	0.00	0.00	0.00	5.01
2127	2387	1.066143	AGGAGACGGTGCTTTATGGTG	60.066	52.381	0.00	0.00	0.00	4.17
2128	2388	1.276622	AGGAGACGGTGCTTTATGGT	58.723	50.000	0.00	0.00	0.00	3.55
2129	2389	2.431057	ACTAGGAGACGGTGCTTTATGG	59.569	50.000	0.00	0.00	0.00	2.74
2130	2390	3.802948	ACTAGGAGACGGTGCTTTATG	57.197	47.619	0.00	0.00	0.00	1.90
2131	2391	4.894114	ACATACTAGGAGACGGTGCTTTAT	59.106	41.667	0.00	0.00	0.00	1.40
2132	2392	4.275810	ACATACTAGGAGACGGTGCTTTA	58.724	43.478	0.00	0.00	0.00	1.85
2138	2398	5.934402	ATGAAAACATACTAGGAGACGGT	57.066	39.130	0.00	0.00	0.00	4.83
2217	2521	7.461156	CGCTCTGTGTTCGTTTTTAGTAGTATC	60.461	40.741	0.00	0.00	0.00	2.24
2225	2529	6.401688	CCATATTCGCTCTGTGTTCGTTTTTA	60.402	38.462	0.00	0.00	0.00	1.52
2226	2530	3.963383	ATTCGCTCTGTGTTCGTTTTT	57.037	38.095	0.00	0.00	0.00	1.94
2238	2542	0.464036	TTCCGCACCATATTCGCTCT	59.536	50.000	0.00	0.00	0.00	4.09
2246	2550	1.302591	TTGCCGTTTCCGCACCATA	60.303	52.632	0.00	0.00	0.00	2.74
2254	2558	0.598065	ATGCTTCTGTTGCCGTTTCC	59.402	50.000	0.00	0.00	0.00	3.13
2273	2577	2.708216	TTCAAGTTCTGGTGAGCACA	57.292	45.000	2.75	0.00	0.00	4.57
2407	2720	7.280730	CAAATATGTTTGTATTGCCACAGTG	57.719	36.000	6.76	0.00	39.85	3.66
2458	2773	6.875076	ACGGATACACTAGATTTTGCTTACT	58.125	36.000	0.00	0.00	0.00	2.24
2459	2774	7.277098	TGAACGGATACACTAGATTTTGCTTAC	59.723	37.037	0.00	0.00	0.00	2.34
2469	2784	5.050126	AGAGGATGAACGGATACACTAGA	57.950	43.478	0.00	0.00	0.00	2.43
2480	2795	6.308282	GTGTCTTACTTGTAAGAGGATGAACG	59.692	42.308	19.74	0.00	36.82	3.95
2482	2797	7.297936	TGTGTCTTACTTGTAAGAGGATGAA	57.702	36.000	19.74	4.61	36.82	2.57
2488	2803	9.256477	TGTTACAATGTGTCTTACTTGTAAGAG	57.744	33.333	19.74	11.59	40.00	2.85
2527	2842	2.627699	GGCCTGAAACTCCAATTCACAA	59.372	45.455	0.00	0.00	33.47	3.33

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.