Multiple sequence alignment - TraesCS1D01G129200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G129200 chr1D 100.000 5249 0 0 1 5249 142656424 142661672 0.000000e+00 9694.0
1 TraesCS1D01G129200 chr1D 95.973 149 6 0 150 298 254436674 254436526 5.250000e-60 243.0
2 TraesCS1D01G129200 chr1D 88.525 183 18 3 4912 5092 200097054 200097235 8.850000e-53 219.0
3 TraesCS1D01G129200 chr1D 98.214 56 1 0 96 151 318665278 318665333 1.200000e-16 99.0
4 TraesCS1D01G129200 chr1A 97.427 2215 40 7 2292 4498 147355548 147353343 0.000000e+00 3759.0
5 TraesCS1D01G129200 chr1A 97.002 1801 47 6 500 2294 147357382 147355583 0.000000e+00 3020.0
6 TraesCS1D01G129200 chr1A 91.566 415 35 0 2 416 147393759 147393345 1.640000e-159 573.0
7 TraesCS1D01G129200 chr1A 91.325 415 36 0 2 416 147372271 147371857 7.630000e-158 568.0
8 TraesCS1D01G129200 chr1A 94.656 262 8 3 4496 4754 147353227 147352969 8.190000e-108 401.0
9 TraesCS1D01G129200 chr1A 89.668 271 20 3 4855 5118 147345488 147345219 6.510000e-89 339.0
10 TraesCS1D01G129200 chr1A 86.885 183 22 2 4912 5092 253048443 253048625 2.480000e-48 204.0
11 TraesCS1D01G129200 chr1A 98.214 56 1 0 96 151 168449769 168449714 1.200000e-16 99.0
12 TraesCS1D01G129200 chr1A 92.593 54 3 1 4763 4816 147348745 147348693 5.640000e-10 76.8
13 TraesCS1D01G129200 chr1A 100.000 40 0 0 463 502 147371873 147371834 2.030000e-09 75.0
14 TraesCS1D01G129200 chr1A 100.000 40 0 0 463 502 147393361 147393322 2.030000e-09 75.0
15 TraesCS1D01G129200 chr1B 95.280 2034 55 8 3048 5067 191959876 191961882 0.000000e+00 3186.0
16 TraesCS1D01G129200 chr1B 98.407 816 8 2 687 1500 191955056 191955868 0.000000e+00 1430.0
17 TraesCS1D01G129200 chr1B 95.331 771 28 7 1530 2294 191955868 191956636 0.000000e+00 1218.0
18 TraesCS1D01G129200 chr1B 95.431 766 17 6 2292 3039 191956671 191957436 0.000000e+00 1205.0
19 TraesCS1D01G129200 chr1B 96.698 212 5 2 463 672 191954554 191954765 8.360000e-93 351.0
20 TraesCS1D01G129200 chr1B 93.548 93 6 0 5145 5237 57129480 57129388 7.090000e-29 139.0
21 TraesCS1D01G129200 chr1B 94.340 53 2 1 292 343 191940941 191940993 4.360000e-11 80.5
22 TraesCS1D01G129200 chr1B 93.878 49 3 0 368 416 191954522 191954570 2.030000e-09 75.0
23 TraesCS1D01G129200 chr6B 92.098 367 28 1 3374 3740 227780832 227780467 2.800000e-142 516.0
24 TraesCS1D01G129200 chr6B 93.289 149 10 0 3873 4021 227780468 227780320 2.460000e-53 220.0
25 TraesCS1D01G129200 chr6B 91.852 135 11 0 3873 4007 640182084 640182218 6.940000e-44 189.0
26 TraesCS1D01G129200 chr6B 89.000 100 3 3 4216 4308 227780324 227780226 3.320000e-22 117.0
27 TraesCS1D01G129200 chr6B 98.039 51 1 0 413 463 20360178 20360128 7.240000e-14 89.8
28 TraesCS1D01G129200 chr7D 96.644 149 5 0 150 298 5054106 5054254 1.130000e-61 248.0
29 TraesCS1D01G129200 chr7D 93.284 134 7 1 3887 4018 175117366 175117499 4.150000e-46 196.0
30 TraesCS1D01G129200 chr7D 100.000 45 0 0 418 462 462673251 462673295 3.370000e-12 84.2
31 TraesCS1D01G129200 chr7D 93.750 48 1 2 4762 4809 558165167 558165122 2.620000e-08 71.3
32 TraesCS1D01G129200 chr5D 96.644 149 5 0 150 298 512411828 512411680 1.130000e-61 248.0
33 TraesCS1D01G129200 chr5D 96.644 149 5 0 150 298 512418765 512418617 1.130000e-61 248.0
34 TraesCS1D01G129200 chr5D 95.973 149 6 0 150 298 6175276 6175424 5.250000e-60 243.0
35 TraesCS1D01G129200 chr5D 87.288 118 15 0 3904 4021 391825400 391825283 9.170000e-28 135.0
36 TraesCS1D01G129200 chr5D 98.214 56 1 0 96 151 329162975 329163030 1.200000e-16 99.0
37 TraesCS1D01G129200 chr5D 100.000 42 0 0 421 462 528214319 528214360 1.570000e-10 78.7
38 TraesCS1D01G129200 chr2D 96.644 149 5 0 150 298 638426147 638425999 1.130000e-61 248.0
39 TraesCS1D01G129200 chrUn 95.973 149 6 0 150 298 381153519 381153667 5.250000e-60 243.0
40 TraesCS1D01G129200 chrUn 98.214 56 1 0 96 151 445812265 445812210 1.200000e-16 99.0
41 TraesCS1D01G129200 chr7B 94.444 144 7 1 3873 4015 735596821 735596678 2.460000e-53 220.0
42 TraesCS1D01G129200 chr7B 91.566 83 7 0 3658 3740 735596902 735596820 1.190000e-21 115.0
43 TraesCS1D01G129200 chr7B 98.214 56 1 0 96 151 125510033 125510088 1.200000e-16 99.0
44 TraesCS1D01G129200 chr7B 100.000 45 0 0 418 462 485833110 485833154 3.370000e-12 84.2
45 TraesCS1D01G129200 chr3B 88.806 134 13 1 3887 4018 28728992 28729125 4.210000e-36 163.0
46 TraesCS1D01G129200 chr3B 87.313 134 15 1 3887 4018 824559655 824559788 9.100000e-33 152.0
47 TraesCS1D01G129200 chr3B 84.967 153 10 8 992 1132 146189585 146189434 5.480000e-30 143.0
48 TraesCS1D01G129200 chr3B 85.149 101 14 1 1826 1926 146188550 146188451 9.300000e-18 102.0
49 TraesCS1D01G129200 chr3B 98.214 56 1 0 96 151 201513899 201513954 1.200000e-16 99.0
50 TraesCS1D01G129200 chr3B 98.214 56 1 0 96 151 201514436 201514491 1.200000e-16 99.0
51 TraesCS1D01G129200 chr3B 100.000 37 0 0 693 729 465344860 465344896 9.430000e-08 69.4
52 TraesCS1D01G129200 chr3B 94.595 37 1 1 4762 4798 640077901 640077936 7.340000e-04 56.5
53 TraesCS1D01G129200 chr6A 97.849 93 2 0 5145 5237 155748015 155747923 1.510000e-35 161.0
54 TraesCS1D01G129200 chr6A 91.398 93 8 0 3618 3710 435402868 435402776 1.530000e-25 128.0
55 TraesCS1D01G129200 chr6A 90.426 94 9 0 5145 5238 137137019 137137112 1.980000e-24 124.0
56 TraesCS1D01G129200 chr6A 96.078 51 2 0 413 463 12326094 12326044 3.370000e-12 84.2
57 TraesCS1D01G129200 chr6A 94.444 54 3 0 413 466 12331149 12331096 3.370000e-12 84.2
58 TraesCS1D01G129200 chr2A 97.849 93 2 0 5145 5237 550181124 550181216 1.510000e-35 161.0
59 TraesCS1D01G129200 chr2A 95.699 93 4 0 5145 5237 348049278 348049370 3.270000e-32 150.0
60 TraesCS1D01G129200 chr5A 87.770 139 14 3 4890 5026 53192100 53192237 5.440000e-35 159.0
61 TraesCS1D01G129200 chr5A 95.699 93 4 0 5145 5237 92207066 92207158 3.270000e-32 150.0
62 TraesCS1D01G129200 chr5A 94.624 93 5 0 5145 5237 92204755 92204847 1.520000e-30 145.0
63 TraesCS1D01G129200 chr5A 93.103 87 6 0 5152 5238 279492548 279492634 1.530000e-25 128.0
64 TraesCS1D01G129200 chr5A 83.453 139 20 3 4890 5026 53017120 53017257 5.520000e-25 126.0
65 TraesCS1D01G129200 chr2B 96.774 93 3 0 5145 5237 310851337 310851429 7.040000e-34 156.0
66 TraesCS1D01G129200 chr3A 85.161 155 10 10 992 1134 113358879 113358726 4.240000e-31 147.0
67 TraesCS1D01G129200 chr3A 85.849 106 11 4 1822 1926 113357659 113357557 5.560000e-20 110.0
68 TraesCS1D01G129200 chr3D 90.291 103 10 0 1030 1132 95252778 95252676 9.170000e-28 135.0
69 TraesCS1D01G129200 chr3D 85.149 101 14 1 1826 1926 95251829 95251730 9.300000e-18 102.0
70 TraesCS1D01G129200 chr6D 98.039 51 1 0 413 463 10765789 10765739 7.240000e-14 89.8
71 TraesCS1D01G129200 chr6D 95.918 49 2 0 414 462 313503450 313503402 4.360000e-11 80.5
72 TraesCS1D01G129200 chr4B 80.909 110 18 3 4985 5092 639224739 639224847 3.370000e-12 84.2
73 TraesCS1D01G129200 chr7A 96.000 50 2 0 413 462 630330434 630330385 1.210000e-11 82.4
74 TraesCS1D01G129200 chr4D 88.235 68 6 2 4978 5044 497923338 497923404 4.360000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G129200 chr1D 142656424 142661672 5248 False 9694.000000 9694 100.000000 1 5249 1 chr1D.!!$F1 5248
1 TraesCS1D01G129200 chr1A 147352969 147357382 4413 True 2393.333333 3759 96.361667 500 4754 3 chr1A.!!$R3 4254
2 TraesCS1D01G129200 chr1A 147345219 147348745 3526 True 207.900000 339 91.130500 4763 5118 2 chr1A.!!$R2 355
3 TraesCS1D01G129200 chr1B 191954522 191961882 7360 False 1244.166667 3186 95.837500 368 5067 6 chr1B.!!$F2 4699
4 TraesCS1D01G129200 chr6B 227780226 227780832 606 True 284.333333 516 91.462333 3374 4308 3 chr6B.!!$R2 934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.040514 GCGCACATGCAACAGTAACA 60.041 50.000 0.30 0.0 42.21 2.41 F
421 422 0.108992 TCGCGTGCGGTCTTAAATCT 60.109 50.000 14.89 0.0 40.25 2.40 F
1854 2142 0.329596 AGGTGAAGATCCAGTTGGGC 59.670 55.000 0.00 0.0 36.21 5.36 F
2514 2841 1.777272 AGCTTGGGGTTCCTGGATATC 59.223 52.381 0.00 0.0 0.00 1.63 F
2597 2924 2.964464 ACCACAGTTTCCATTCATGCAA 59.036 40.909 0.00 0.0 0.00 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 2255 0.380378 GACGCCAGCAGAAAACACAA 59.620 50.000 0.0 0.0 0.00 3.33 R
2018 2306 2.287547 CCGTGTTTTCCATGTGAACTGG 60.288 50.000 0.0 0.0 31.05 4.00 R
2894 3240 6.128309 ACAAACCAATTCAAGAAGCACAAAAC 60.128 34.615 0.0 0.0 0.00 2.43 R
4181 6966 1.266718 GCCACGTCATCTGCAAAAAGA 59.733 47.619 0.0 0.0 0.00 2.52 R
4531 7442 6.567687 TTTCGAGCCACAGATAAAATTGAA 57.432 33.333 0.0 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.202878 TAGAAGGATGGCGCGCAC 60.203 61.111 34.42 22.27 0.00 5.34
18 19 3.012859 TAGAAGGATGGCGCGCACA 62.013 57.895 34.42 27.19 0.00 4.57
19 20 2.310327 TAGAAGGATGGCGCGCACAT 62.310 55.000 34.42 30.39 0.00 3.21
20 21 3.459378 GAAGGATGGCGCGCACATG 62.459 63.158 34.42 0.00 0.00 3.21
23 24 4.479542 GATGGCGCGCACATGCAA 62.480 61.111 34.42 8.93 42.21 4.08
24 25 4.781959 ATGGCGCGCACATGCAAC 62.782 61.111 34.42 13.35 42.21 4.17
27 28 4.688419 GCGCGCACATGCAACAGT 62.688 61.111 29.10 0.00 42.21 3.55
28 29 2.859580 CGCGCACATGCAACAGTA 59.140 55.556 8.75 0.00 42.21 2.74
29 30 1.206325 CGCGCACATGCAACAGTAA 59.794 52.632 8.75 0.00 42.21 2.24
30 31 1.059657 CGCGCACATGCAACAGTAAC 61.060 55.000 8.75 0.00 42.21 2.50
31 32 0.040514 GCGCACATGCAACAGTAACA 60.041 50.000 0.30 0.00 42.21 2.41
32 33 1.599171 GCGCACATGCAACAGTAACAA 60.599 47.619 0.30 0.00 42.21 2.83
33 34 2.309693 CGCACATGCAACAGTAACAAG 58.690 47.619 4.49 0.00 42.21 3.16
34 35 2.032117 CGCACATGCAACAGTAACAAGA 60.032 45.455 4.49 0.00 42.21 3.02
35 36 3.547813 CGCACATGCAACAGTAACAAGAA 60.548 43.478 4.49 0.00 42.21 2.52
36 37 4.358851 GCACATGCAACAGTAACAAGAAA 58.641 39.130 0.00 0.00 41.59 2.52
37 38 4.207019 GCACATGCAACAGTAACAAGAAAC 59.793 41.667 0.00 0.00 41.59 2.78
38 39 5.581605 CACATGCAACAGTAACAAGAAACT 58.418 37.500 0.00 0.00 0.00 2.66
39 40 6.724263 CACATGCAACAGTAACAAGAAACTA 58.276 36.000 0.00 0.00 0.00 2.24
40 41 6.852853 CACATGCAACAGTAACAAGAAACTAG 59.147 38.462 0.00 0.00 0.00 2.57
41 42 5.418310 TGCAACAGTAACAAGAAACTAGC 57.582 39.130 0.00 0.00 0.00 3.42
42 43 4.025229 TGCAACAGTAACAAGAAACTAGCG 60.025 41.667 0.00 0.00 0.00 4.26
43 44 4.610680 GCAACAGTAACAAGAAACTAGCGG 60.611 45.833 0.00 0.00 0.00 5.52
44 45 3.064931 ACAGTAACAAGAAACTAGCGGC 58.935 45.455 0.00 0.00 0.00 6.53
45 46 3.244112 ACAGTAACAAGAAACTAGCGGCT 60.244 43.478 7.98 7.98 0.00 5.52
46 47 3.123621 CAGTAACAAGAAACTAGCGGCTG 59.876 47.826 13.86 5.32 0.00 4.85
47 48 2.543777 AACAAGAAACTAGCGGCTGA 57.456 45.000 13.86 0.00 0.00 4.26
48 49 2.086054 ACAAGAAACTAGCGGCTGAG 57.914 50.000 13.86 8.66 0.00 3.35
49 50 1.338200 ACAAGAAACTAGCGGCTGAGG 60.338 52.381 13.86 5.37 0.00 3.86
50 51 0.977395 AAGAAACTAGCGGCTGAGGT 59.023 50.000 13.86 6.03 0.00 3.85
51 52 0.247736 AGAAACTAGCGGCTGAGGTG 59.752 55.000 13.86 0.27 0.00 4.00
52 53 1.362406 GAAACTAGCGGCTGAGGTGC 61.362 60.000 13.86 0.00 0.00 5.01
53 54 3.649277 AACTAGCGGCTGAGGTGCG 62.649 63.158 13.86 0.00 0.00 5.34
66 67 4.806481 GTGCGCGTGCTGCTCATG 62.806 66.667 23.16 0.00 41.01 3.07
68 69 3.792047 GCGCGTGCTGCTCATGAA 61.792 61.111 15.02 0.00 43.27 2.57
69 70 2.862436 CGCGTGCTGCTCATGAAA 59.138 55.556 0.00 0.00 43.27 2.69
70 71 1.207339 CGCGTGCTGCTCATGAAAA 59.793 52.632 0.00 0.00 43.27 2.29
71 72 0.791983 CGCGTGCTGCTCATGAAAAG 60.792 55.000 0.00 0.00 43.27 2.27
72 73 0.455633 GCGTGCTGCTCATGAAAAGG 60.456 55.000 0.00 0.00 41.73 3.11
73 74 1.159285 CGTGCTGCTCATGAAAAGGA 58.841 50.000 0.00 0.00 33.49 3.36
74 75 1.741706 CGTGCTGCTCATGAAAAGGAT 59.258 47.619 0.00 0.00 33.49 3.24
75 76 2.938451 CGTGCTGCTCATGAAAAGGATA 59.062 45.455 0.00 0.00 33.49 2.59
76 77 3.374988 CGTGCTGCTCATGAAAAGGATAA 59.625 43.478 0.00 0.00 33.49 1.75
77 78 4.036027 CGTGCTGCTCATGAAAAGGATAAT 59.964 41.667 0.00 0.00 33.49 1.28
78 79 5.279384 GTGCTGCTCATGAAAAGGATAATG 58.721 41.667 0.00 0.00 0.00 1.90
79 80 4.340097 TGCTGCTCATGAAAAGGATAATGG 59.660 41.667 0.00 0.00 0.00 3.16
80 81 4.581824 GCTGCTCATGAAAAGGATAATGGA 59.418 41.667 0.00 0.00 0.00 3.41
81 82 5.278364 GCTGCTCATGAAAAGGATAATGGAG 60.278 44.000 0.00 0.00 0.00 3.86
82 83 5.135383 TGCTCATGAAAAGGATAATGGAGG 58.865 41.667 0.00 0.00 0.00 4.30
83 84 4.522022 GCTCATGAAAAGGATAATGGAGGG 59.478 45.833 0.00 0.00 0.00 4.30
84 85 5.691167 GCTCATGAAAAGGATAATGGAGGGA 60.691 44.000 0.00 0.00 0.00 4.20
85 86 6.339999 TCATGAAAAGGATAATGGAGGGAA 57.660 37.500 0.00 0.00 0.00 3.97
86 87 6.129179 TCATGAAAAGGATAATGGAGGGAAC 58.871 40.000 0.00 0.00 0.00 3.62
88 89 5.509498 TGAAAAGGATAATGGAGGGAACTG 58.491 41.667 0.00 0.00 44.43 3.16
89 90 4.526438 AAAGGATAATGGAGGGAACTGG 57.474 45.455 0.00 0.00 44.43 4.00
90 91 3.151542 AGGATAATGGAGGGAACTGGT 57.848 47.619 0.00 0.00 44.43 4.00
91 92 2.780010 AGGATAATGGAGGGAACTGGTG 59.220 50.000 0.00 0.00 44.43 4.17
92 93 2.158608 GGATAATGGAGGGAACTGGTGG 60.159 54.545 0.00 0.00 44.43 4.61
93 94 2.352561 TAATGGAGGGAACTGGTGGA 57.647 50.000 0.00 0.00 44.43 4.02
94 95 1.455822 AATGGAGGGAACTGGTGGAA 58.544 50.000 0.00 0.00 44.43 3.53
95 96 1.686236 ATGGAGGGAACTGGTGGAAT 58.314 50.000 0.00 0.00 44.43 3.01
96 97 0.991920 TGGAGGGAACTGGTGGAATC 59.008 55.000 0.00 0.00 44.43 2.52
97 98 1.290134 GGAGGGAACTGGTGGAATCT 58.710 55.000 0.00 0.00 44.43 2.40
98 99 1.636003 GGAGGGAACTGGTGGAATCTT 59.364 52.381 0.00 0.00 44.43 2.40
99 100 2.041755 GGAGGGAACTGGTGGAATCTTT 59.958 50.000 0.00 0.00 44.43 2.52
100 101 3.084786 GAGGGAACTGGTGGAATCTTTG 58.915 50.000 0.00 0.00 44.43 2.77
101 102 2.716424 AGGGAACTGGTGGAATCTTTGA 59.284 45.455 0.00 0.00 41.13 2.69
102 103 3.334881 AGGGAACTGGTGGAATCTTTGAT 59.665 43.478 0.00 0.00 41.13 2.57
103 104 4.089361 GGGAACTGGTGGAATCTTTGATT 58.911 43.478 0.00 0.00 0.00 2.57
104 105 4.158579 GGGAACTGGTGGAATCTTTGATTC 59.841 45.833 10.77 10.77 0.00 2.52
105 106 5.012893 GGAACTGGTGGAATCTTTGATTCT 58.987 41.667 16.62 0.00 0.00 2.40
106 107 5.478332 GGAACTGGTGGAATCTTTGATTCTT 59.522 40.000 16.62 5.48 0.00 2.52
107 108 6.015095 GGAACTGGTGGAATCTTTGATTCTTT 60.015 38.462 16.62 4.79 0.00 2.52
108 109 6.983906 ACTGGTGGAATCTTTGATTCTTTT 57.016 33.333 16.62 0.00 0.00 2.27
109 110 7.365497 ACTGGTGGAATCTTTGATTCTTTTT 57.635 32.000 16.62 0.00 0.00 1.94
110 111 7.436933 ACTGGTGGAATCTTTGATTCTTTTTC 58.563 34.615 16.62 4.25 0.00 2.29
111 112 7.288621 ACTGGTGGAATCTTTGATTCTTTTTCT 59.711 33.333 16.62 0.00 0.00 2.52
112 113 8.021898 TGGTGGAATCTTTGATTCTTTTTCTT 57.978 30.769 16.62 0.00 0.00 2.52
113 114 8.485392 TGGTGGAATCTTTGATTCTTTTTCTTT 58.515 29.630 16.62 0.00 0.00 2.52
114 115 8.982685 GGTGGAATCTTTGATTCTTTTTCTTTC 58.017 33.333 16.62 2.04 0.00 2.62
115 116 9.755804 GTGGAATCTTTGATTCTTTTTCTTTCT 57.244 29.630 16.62 0.00 0.00 2.52
149 150 9.617523 GGAAATTATCCCAAATGACAAATGAAT 57.382 29.630 0.00 0.00 43.00 2.57
217 218 9.341899 CATAATACTTTGATAAATTAAGCGGGC 57.658 33.333 0.00 0.00 0.00 6.13
218 219 4.287238 ACTTTGATAAATTAAGCGGGCG 57.713 40.909 0.00 0.00 0.00 6.13
219 220 3.942748 ACTTTGATAAATTAAGCGGGCGA 59.057 39.130 0.00 0.00 0.00 5.54
220 221 4.035208 ACTTTGATAAATTAAGCGGGCGAG 59.965 41.667 0.00 0.00 0.00 5.03
221 222 1.871039 TGATAAATTAAGCGGGCGAGC 59.129 47.619 0.00 0.00 37.41 5.03
222 223 0.865769 ATAAATTAAGCGGGCGAGCG 59.134 50.000 0.00 0.00 43.00 5.03
223 224 1.155424 TAAATTAAGCGGGCGAGCGG 61.155 55.000 0.00 0.00 43.00 5.52
234 235 2.817834 CGAGCGGCGGGAATTGAA 60.818 61.111 9.78 0.00 36.03 2.69
235 236 2.791927 GAGCGGCGGGAATTGAAC 59.208 61.111 9.78 0.00 0.00 3.18
236 237 2.750237 AGCGGCGGGAATTGAACC 60.750 61.111 9.78 0.00 0.00 3.62
237 238 3.822192 GCGGCGGGAATTGAACCC 61.822 66.667 9.78 0.00 43.57 4.11
246 247 4.152284 GGGAATTGAACCCGTATCTTCT 57.848 45.455 0.00 0.00 37.85 2.85
247 248 4.127907 GGGAATTGAACCCGTATCTTCTC 58.872 47.826 0.00 0.00 37.85 2.87
248 249 4.127907 GGAATTGAACCCGTATCTTCTCC 58.872 47.826 0.00 0.00 0.00 3.71
249 250 4.141688 GGAATTGAACCCGTATCTTCTCCT 60.142 45.833 0.00 0.00 0.00 3.69
250 251 5.429130 GAATTGAACCCGTATCTTCTCCTT 58.571 41.667 0.00 0.00 0.00 3.36
251 252 3.887621 TGAACCCGTATCTTCTCCTTG 57.112 47.619 0.00 0.00 0.00 3.61
252 253 2.500098 TGAACCCGTATCTTCTCCTTGG 59.500 50.000 0.00 0.00 0.00 3.61
253 254 0.831307 ACCCGTATCTTCTCCTTGGC 59.169 55.000 0.00 0.00 0.00 4.52
254 255 0.830648 CCCGTATCTTCTCCTTGGCA 59.169 55.000 0.00 0.00 0.00 4.92
255 256 1.209504 CCCGTATCTTCTCCTTGGCAA 59.790 52.381 0.00 0.00 0.00 4.52
256 257 2.555199 CCGTATCTTCTCCTTGGCAAG 58.445 52.381 20.31 20.31 0.00 4.01
271 272 6.645790 CTTGGCAAGGAGATATTTTAGCAT 57.354 37.500 19.55 0.00 0.00 3.79
272 273 7.047460 CTTGGCAAGGAGATATTTTAGCATT 57.953 36.000 19.55 0.00 0.00 3.56
273 274 6.395426 TGGCAAGGAGATATTTTAGCATTG 57.605 37.500 0.00 0.00 0.00 2.82
274 275 6.128486 TGGCAAGGAGATATTTTAGCATTGA 58.872 36.000 0.00 0.00 0.00 2.57
275 276 6.606796 TGGCAAGGAGATATTTTAGCATTGAA 59.393 34.615 0.00 0.00 0.00 2.69
276 277 6.920210 GGCAAGGAGATATTTTAGCATTGAAC 59.080 38.462 0.00 0.00 0.00 3.18
277 278 7.201857 GGCAAGGAGATATTTTAGCATTGAACT 60.202 37.037 0.00 0.00 0.00 3.01
278 279 8.840321 GCAAGGAGATATTTTAGCATTGAACTA 58.160 33.333 0.00 0.00 0.00 2.24
280 281 9.905713 AAGGAGATATTTTAGCATTGAACTACA 57.094 29.630 0.00 0.00 0.00 2.74
281 282 9.331282 AGGAGATATTTTAGCATTGAACTACAC 57.669 33.333 0.00 0.00 0.00 2.90
282 283 9.331282 GGAGATATTTTAGCATTGAACTACACT 57.669 33.333 0.00 0.00 0.00 3.55
284 285 9.035607 AGATATTTTAGCATTGAACTACACTCG 57.964 33.333 0.00 0.00 0.00 4.18
285 286 4.921470 TTTAGCATTGAACTACACTCGC 57.079 40.909 0.00 0.00 0.00 5.03
286 287 2.751166 AGCATTGAACTACACTCGCT 57.249 45.000 0.00 0.00 0.00 4.93
287 288 3.868757 AGCATTGAACTACACTCGCTA 57.131 42.857 0.00 0.00 0.00 4.26
288 289 4.392921 AGCATTGAACTACACTCGCTAT 57.607 40.909 0.00 0.00 0.00 2.97
289 290 4.115516 AGCATTGAACTACACTCGCTATG 58.884 43.478 0.00 0.00 0.00 2.23
290 291 3.246226 GCATTGAACTACACTCGCTATGG 59.754 47.826 0.00 0.00 0.00 2.74
291 292 4.433615 CATTGAACTACACTCGCTATGGT 58.566 43.478 0.00 0.00 0.00 3.55
292 293 5.588240 CATTGAACTACACTCGCTATGGTA 58.412 41.667 0.00 0.00 0.00 3.25
293 294 5.847111 TTGAACTACACTCGCTATGGTAT 57.153 39.130 0.00 0.00 0.00 2.73
294 295 6.947644 TTGAACTACACTCGCTATGGTATA 57.052 37.500 0.00 0.00 0.00 1.47
295 296 7.520451 TTGAACTACACTCGCTATGGTATAT 57.480 36.000 0.00 0.00 0.00 0.86
296 297 8.625786 TTGAACTACACTCGCTATGGTATATA 57.374 34.615 0.00 0.00 0.00 0.86
297 298 8.803397 TGAACTACACTCGCTATGGTATATAT 57.197 34.615 0.00 0.00 0.00 0.86
298 299 8.674607 TGAACTACACTCGCTATGGTATATATG 58.325 37.037 0.00 0.00 0.00 1.78
299 300 7.028926 ACTACACTCGCTATGGTATATATGC 57.971 40.000 0.00 0.00 0.00 3.14
300 301 5.914898 ACACTCGCTATGGTATATATGCA 57.085 39.130 3.10 0.00 0.00 3.96
301 302 6.280855 ACACTCGCTATGGTATATATGCAA 57.719 37.500 3.10 0.00 0.00 4.08
302 303 6.697395 ACACTCGCTATGGTATATATGCAAA 58.303 36.000 3.10 0.00 0.00 3.68
303 304 7.158697 ACACTCGCTATGGTATATATGCAAAA 58.841 34.615 3.10 0.00 0.00 2.44
304 305 7.824289 ACACTCGCTATGGTATATATGCAAAAT 59.176 33.333 3.10 0.00 0.00 1.82
305 306 9.313118 CACTCGCTATGGTATATATGCAAAATA 57.687 33.333 3.10 0.00 0.00 1.40
306 307 9.534565 ACTCGCTATGGTATATATGCAAAATAG 57.465 33.333 3.10 7.72 0.00 1.73
307 308 9.750125 CTCGCTATGGTATATATGCAAAATAGA 57.250 33.333 15.39 0.00 0.00 1.98
337 338 8.518430 ACACAAAGTATATCATATGCAAACCA 57.482 30.769 0.00 0.00 0.00 3.67
338 339 8.623903 ACACAAAGTATATCATATGCAAACCAG 58.376 33.333 0.00 0.00 0.00 4.00
339 340 8.839343 CACAAAGTATATCATATGCAAACCAGA 58.161 33.333 0.00 0.00 0.00 3.86
340 341 9.407380 ACAAAGTATATCATATGCAAACCAGAA 57.593 29.630 0.00 0.00 0.00 3.02
345 346 9.973246 GTATATCATATGCAAACCAGAAATACG 57.027 33.333 0.00 0.00 0.00 3.06
346 347 8.846943 ATATCATATGCAAACCAGAAATACGA 57.153 30.769 0.00 0.00 0.00 3.43
347 348 7.750229 ATCATATGCAAACCAGAAATACGAT 57.250 32.000 0.00 0.00 0.00 3.73
348 349 6.958255 TCATATGCAAACCAGAAATACGATG 58.042 36.000 0.00 0.00 0.00 3.84
349 350 6.542005 TCATATGCAAACCAGAAATACGATGT 59.458 34.615 0.00 0.00 0.00 3.06
350 351 4.418013 TGCAAACCAGAAATACGATGTG 57.582 40.909 0.00 0.00 0.00 3.21
351 352 4.068599 TGCAAACCAGAAATACGATGTGA 58.931 39.130 0.00 0.00 0.00 3.58
352 353 4.699735 TGCAAACCAGAAATACGATGTGAT 59.300 37.500 0.00 0.00 0.00 3.06
353 354 5.877564 TGCAAACCAGAAATACGATGTGATA 59.122 36.000 0.00 0.00 0.00 2.15
354 355 6.542005 TGCAAACCAGAAATACGATGTGATAT 59.458 34.615 0.00 0.00 0.00 1.63
355 356 7.066887 TGCAAACCAGAAATACGATGTGATATT 59.933 33.333 0.00 0.00 0.00 1.28
356 357 7.376866 GCAAACCAGAAATACGATGTGATATTG 59.623 37.037 0.00 0.00 0.00 1.90
357 358 7.496529 AACCAGAAATACGATGTGATATTGG 57.503 36.000 0.00 0.00 0.00 3.16
358 359 6.826668 ACCAGAAATACGATGTGATATTGGA 58.173 36.000 0.00 0.00 0.00 3.53
359 360 6.931281 ACCAGAAATACGATGTGATATTGGAG 59.069 38.462 0.00 0.00 0.00 3.86
360 361 6.128445 CCAGAAATACGATGTGATATTGGAGC 60.128 42.308 0.00 0.00 0.00 4.70
361 362 6.424812 CAGAAATACGATGTGATATTGGAGCA 59.575 38.462 0.00 0.00 0.00 4.26
362 363 6.425114 AGAAATACGATGTGATATTGGAGCAC 59.575 38.462 0.00 0.00 45.09 4.40
363 364 2.838736 ACGATGTGATATTGGAGCACC 58.161 47.619 0.00 0.00 44.19 5.01
364 365 2.435805 ACGATGTGATATTGGAGCACCT 59.564 45.455 0.71 0.00 44.19 4.00
365 366 2.804527 CGATGTGATATTGGAGCACCTG 59.195 50.000 0.71 0.00 44.19 4.00
366 367 3.493176 CGATGTGATATTGGAGCACCTGA 60.493 47.826 0.71 0.00 44.19 3.86
376 377 1.517242 GAGCACCTGAACTTGGACAG 58.483 55.000 0.00 0.00 0.00 3.51
382 383 1.202806 CCTGAACTTGGACAGCAAGGA 60.203 52.381 0.00 0.00 34.20 3.36
384 385 2.551459 CTGAACTTGGACAGCAAGGAAG 59.449 50.000 0.00 0.00 34.20 3.46
416 417 4.789075 GCCTCGCGTGCGGTCTTA 62.789 66.667 14.89 0.00 40.25 2.10
417 418 2.126228 CCTCGCGTGCGGTCTTAA 60.126 61.111 14.89 0.00 40.25 1.85
418 419 1.735198 CCTCGCGTGCGGTCTTAAA 60.735 57.895 14.89 0.00 40.25 1.52
419 420 1.082117 CCTCGCGTGCGGTCTTAAAT 61.082 55.000 14.89 0.00 40.25 1.40
420 421 0.297820 CTCGCGTGCGGTCTTAAATC 59.702 55.000 14.89 0.00 40.25 2.17
421 422 0.108992 TCGCGTGCGGTCTTAAATCT 60.109 50.000 14.89 0.00 40.25 2.40
422 423 1.132834 TCGCGTGCGGTCTTAAATCTA 59.867 47.619 14.89 0.00 40.25 1.98
423 424 2.124903 CGCGTGCGGTCTTAAATCTAT 58.875 47.619 6.30 0.00 35.56 1.98
424 425 3.003585 TCGCGTGCGGTCTTAAATCTATA 59.996 43.478 14.89 0.00 40.25 1.31
425 426 3.918591 CGCGTGCGGTCTTAAATCTATAT 59.081 43.478 6.30 0.00 35.56 0.86
426 427 4.201494 CGCGTGCGGTCTTAAATCTATATG 60.201 45.833 6.30 0.00 35.56 1.78
427 428 4.921515 GCGTGCGGTCTTAAATCTATATGA 59.078 41.667 0.00 0.00 0.00 2.15
428 429 5.404366 GCGTGCGGTCTTAAATCTATATGAA 59.596 40.000 0.00 0.00 0.00 2.57
429 430 6.090898 GCGTGCGGTCTTAAATCTATATGAAT 59.909 38.462 0.00 0.00 0.00 2.57
430 431 7.360101 GCGTGCGGTCTTAAATCTATATGAATT 60.360 37.037 0.00 0.00 0.00 2.17
431 432 8.495949 CGTGCGGTCTTAAATCTATATGAATTT 58.504 33.333 0.00 0.00 0.00 1.82
448 449 9.941325 ATATGAATTTTGATTTTGCTAACCACA 57.059 25.926 0.00 0.00 0.00 4.17
449 450 8.851541 ATGAATTTTGATTTTGCTAACCACAT 57.148 26.923 0.00 0.00 0.00 3.21
450 451 8.085720 TGAATTTTGATTTTGCTAACCACATG 57.914 30.769 0.00 0.00 0.00 3.21
451 452 7.714377 TGAATTTTGATTTTGCTAACCACATGT 59.286 29.630 0.00 0.00 0.00 3.21
452 453 7.656707 ATTTTGATTTTGCTAACCACATGTC 57.343 32.000 0.00 0.00 0.00 3.06
453 454 4.782019 TGATTTTGCTAACCACATGTCC 57.218 40.909 0.00 0.00 0.00 4.02
454 455 3.509575 TGATTTTGCTAACCACATGTCCC 59.490 43.478 0.00 0.00 0.00 4.46
455 456 2.666272 TTTGCTAACCACATGTCCCA 57.334 45.000 0.00 0.00 0.00 4.37
456 457 2.897271 TTGCTAACCACATGTCCCAT 57.103 45.000 0.00 0.00 0.00 4.00
457 458 2.127271 TGCTAACCACATGTCCCATG 57.873 50.000 0.00 2.77 0.00 3.66
458 459 0.740737 GCTAACCACATGTCCCATGC 59.259 55.000 0.00 0.00 0.00 4.06
459 460 1.016627 CTAACCACATGTCCCATGCG 58.983 55.000 0.00 0.00 0.00 4.73
460 461 0.393673 TAACCACATGTCCCATGCGG 60.394 55.000 9.19 9.19 0.00 5.69
461 462 2.045045 CCACATGTCCCATGCGGT 60.045 61.111 0.00 0.00 0.00 5.68
462 463 2.409055 CCACATGTCCCATGCGGTG 61.409 63.158 0.00 0.00 0.00 4.94
463 464 2.751436 ACATGTCCCATGCGGTGC 60.751 61.111 4.19 0.00 0.00 5.01
481 482 2.430921 CTCGCGTGCGGTCTTTCT 60.431 61.111 14.89 0.00 40.25 2.52
682 685 3.236896 TCTCCTCCTGACGTAAACCTTT 58.763 45.455 0.00 0.00 0.00 3.11
916 1195 2.280457 GCACCCAGCGATCTAGGC 60.280 66.667 0.00 0.00 0.00 3.93
917 1196 2.423446 CACCCAGCGATCTAGGCC 59.577 66.667 0.00 0.00 0.00 5.19
918 1197 2.136878 CACCCAGCGATCTAGGCCT 61.137 63.158 11.78 11.78 0.00 5.19
1183 1465 3.243771 CGAGGTATAAGATTCCGTGGCTT 60.244 47.826 0.00 0.00 0.00 4.35
1225 1507 1.074727 TCTGTGGTTGGTTATGGTGGG 59.925 52.381 0.00 0.00 0.00 4.61
1251 1533 1.437573 GACGCCGAGTGATGGATCA 59.562 57.895 0.00 0.00 0.00 2.92
1429 1713 0.762418 TGTAAGTGGGGGTGACACAG 59.238 55.000 8.08 0.00 41.21 3.66
1521 1805 8.924303 ACTAAATCTGTGGTGTGCTATTATCTA 58.076 33.333 0.00 0.00 0.00 1.98
1594 1878 9.719355 TGAGTTAGCAATAGTTTGTTGATCTTA 57.281 29.630 0.00 0.00 35.17 2.10
1600 1884 8.680903 AGCAATAGTTTGTTGATCTTAAGATGG 58.319 33.333 22.61 0.00 33.41 3.51
1601 1885 7.433425 GCAATAGTTTGTTGATCTTAAGATGGC 59.567 37.037 22.61 9.70 33.41 4.40
1602 1886 8.461222 CAATAGTTTGTTGATCTTAAGATGGCA 58.539 33.333 22.61 12.19 34.37 4.92
1718 2006 1.075601 AGTGGGGATTTGCTGGAGAA 58.924 50.000 0.00 0.00 0.00 2.87
1854 2142 0.329596 AGGTGAAGATCCAGTTGGGC 59.670 55.000 0.00 0.00 36.21 5.36
1967 2255 6.882610 TTCATATTGTGCAGAACTGTTCTT 57.117 33.333 19.89 7.74 38.11 2.52
2018 2306 3.262420 CCATGTACTAGTGTCAGTTGCC 58.738 50.000 5.39 0.00 0.00 4.52
2059 2347 9.699703 AACACGGCTTACAAACATAAATTAAAT 57.300 25.926 0.00 0.00 0.00 1.40
2343 2670 6.939132 ATTCTCATTATGTCCTCTTGCAAG 57.061 37.500 20.81 20.81 0.00 4.01
2514 2841 1.777272 AGCTTGGGGTTCCTGGATATC 59.223 52.381 0.00 0.00 0.00 1.63
2597 2924 2.964464 ACCACAGTTTCCATTCATGCAA 59.036 40.909 0.00 0.00 0.00 4.08
2894 3240 4.566545 TTTCACCTACAACAGCACATTG 57.433 40.909 0.00 0.00 0.00 2.82
3046 5824 8.380644 CGTGGTTGTTTAATTGATAGAGTACTG 58.619 37.037 0.00 0.00 0.00 2.74
3080 5858 9.878667 TCATTTCTTGCACAATAATTGATGAAT 57.121 25.926 0.00 0.00 0.00 2.57
3151 5931 9.325248 TCATATGACTGGATAATTACCATGAGA 57.675 33.333 0.00 0.00 36.79 3.27
4181 6966 5.126545 ACAATGCAGCATACTCATGTGATTT 59.873 36.000 8.75 0.00 34.40 2.17
4479 7271 1.347707 CTTCTGTAGGTTGGGCACAGA 59.652 52.381 0.00 0.00 45.17 3.41
4531 7442 6.115446 CCATCTTGTCTTGTATGGTATGTGT 58.885 40.000 0.00 0.00 35.23 3.72
4657 7571 1.822613 CGCCTCACCTACGCCTCTA 60.823 63.158 0.00 0.00 0.00 2.43
4809 7723 0.104855 CGAGAGGGGATGCATCGAAA 59.895 55.000 20.15 0.00 35.47 3.46
4810 7724 1.587547 GAGAGGGGATGCATCGAAAC 58.412 55.000 20.15 11.59 0.00 2.78
4811 7725 0.911769 AGAGGGGATGCATCGAAACA 59.088 50.000 20.15 0.00 0.00 2.83
4813 7727 2.091541 GAGGGGATGCATCGAAACAAA 58.908 47.619 20.15 0.00 0.00 2.83
4814 7728 1.818674 AGGGGATGCATCGAAACAAAC 59.181 47.619 20.15 3.82 0.00 2.93
4815 7729 1.818674 GGGGATGCATCGAAACAAACT 59.181 47.619 20.15 0.00 0.00 2.66
4816 7730 2.231235 GGGGATGCATCGAAACAAACTT 59.769 45.455 20.15 0.00 0.00 2.66
4817 7731 3.244976 GGGATGCATCGAAACAAACTTG 58.755 45.455 20.15 0.00 0.00 3.16
4819 7733 3.305335 GGATGCATCGAAACAAACTTGGT 60.305 43.478 20.15 0.00 0.00 3.67
4821 7735 4.902443 TGCATCGAAACAAACTTGGTTA 57.098 36.364 0.00 0.00 38.41 2.85
4867 10946 2.754995 GCAAGCTTAGCGGGACAGC 61.755 63.158 0.00 0.00 37.41 4.40
5095 11181 1.924524 CGTTGCTCCGACGAATATGTT 59.075 47.619 0.00 0.00 43.17 2.71
5096 11182 3.110358 CGTTGCTCCGACGAATATGTTA 58.890 45.455 0.00 0.00 43.17 2.41
5104 11190 7.331440 TGCTCCGACGAATATGTTAAAAGTAAA 59.669 33.333 0.00 0.00 0.00 2.01
5106 11192 9.685005 CTCCGACGAATATGTTAAAAGTAAAAG 57.315 33.333 0.00 0.00 0.00 2.27
5121 11207 6.743575 AAGTAAAAGGAGATTGAATGTCGG 57.256 37.500 0.00 0.00 0.00 4.79
5122 11208 5.805728 AGTAAAAGGAGATTGAATGTCGGT 58.194 37.500 0.00 0.00 0.00 4.69
5123 11209 6.238648 AGTAAAAGGAGATTGAATGTCGGTT 58.761 36.000 0.00 0.00 0.00 4.44
5124 11210 6.715264 AGTAAAAGGAGATTGAATGTCGGTTT 59.285 34.615 0.00 2.56 0.00 3.27
5125 11211 6.405278 AAAAGGAGATTGAATGTCGGTTTT 57.595 33.333 7.67 7.67 0.00 2.43
5126 11212 5.629079 AAGGAGATTGAATGTCGGTTTTC 57.371 39.130 0.00 0.00 0.00 2.29
5127 11213 4.911390 AGGAGATTGAATGTCGGTTTTCT 58.089 39.130 0.00 0.00 0.00 2.52
5128 11214 6.049955 AGGAGATTGAATGTCGGTTTTCTA 57.950 37.500 0.00 0.00 0.00 2.10
5129 11215 6.653989 AGGAGATTGAATGTCGGTTTTCTAT 58.346 36.000 0.00 0.00 0.00 1.98
5130 11216 7.112779 AGGAGATTGAATGTCGGTTTTCTATT 58.887 34.615 0.00 0.00 0.00 1.73
5131 11217 7.611855 AGGAGATTGAATGTCGGTTTTCTATTT 59.388 33.333 0.00 0.00 0.00 1.40
5132 11218 8.889717 GGAGATTGAATGTCGGTTTTCTATTTA 58.110 33.333 0.00 0.00 0.00 1.40
5170 11256 9.344772 TGAGAAGTCTAGTATATTCTTCAGTCC 57.655 37.037 0.00 0.00 34.74 3.85
5171 11257 8.700439 AGAAGTCTAGTATATTCTTCAGTCCC 57.300 38.462 0.00 0.00 34.74 4.46
5172 11258 8.282982 AGAAGTCTAGTATATTCTTCAGTCCCA 58.717 37.037 0.00 0.00 34.74 4.37
5173 11259 8.840200 AAGTCTAGTATATTCTTCAGTCCCAA 57.160 34.615 0.00 0.00 0.00 4.12
5174 11260 9.440761 AAGTCTAGTATATTCTTCAGTCCCAAT 57.559 33.333 0.00 0.00 0.00 3.16
5177 11263 9.310449 TCTAGTATATTCTTCAGTCCCAATACC 57.690 37.037 0.00 0.00 0.00 2.73
5178 11264 7.931015 AGTATATTCTTCAGTCCCAATACCA 57.069 36.000 0.00 0.00 0.00 3.25
5179 11265 8.331931 AGTATATTCTTCAGTCCCAATACCAA 57.668 34.615 0.00 0.00 0.00 3.67
5180 11266 8.432805 AGTATATTCTTCAGTCCCAATACCAAG 58.567 37.037 0.00 0.00 0.00 3.61
5181 11267 4.301072 TTCTTCAGTCCCAATACCAAGG 57.699 45.455 0.00 0.00 0.00 3.61
5182 11268 3.256704 TCTTCAGTCCCAATACCAAGGT 58.743 45.455 0.00 0.00 0.00 3.50
5183 11269 3.009033 TCTTCAGTCCCAATACCAAGGTG 59.991 47.826 1.07 0.00 0.00 4.00
5184 11270 1.633432 TCAGTCCCAATACCAAGGTGG 59.367 52.381 1.07 0.00 45.02 4.61
5185 11271 1.633432 CAGTCCCAATACCAAGGTGGA 59.367 52.381 1.07 0.00 40.96 4.02
5186 11272 2.041081 CAGTCCCAATACCAAGGTGGAA 59.959 50.000 1.07 0.00 40.96 3.53
5187 11273 2.308866 AGTCCCAATACCAAGGTGGAAG 59.691 50.000 1.07 0.00 40.96 3.46
5188 11274 2.307686 GTCCCAATACCAAGGTGGAAGA 59.692 50.000 1.07 0.00 40.96 2.87
5189 11275 2.307686 TCCCAATACCAAGGTGGAAGAC 59.692 50.000 1.07 0.00 40.96 3.01
5190 11276 2.041081 CCCAATACCAAGGTGGAAGACA 59.959 50.000 1.07 0.00 40.96 3.41
5191 11277 3.499563 CCCAATACCAAGGTGGAAGACAA 60.500 47.826 1.07 0.00 40.96 3.18
5192 11278 3.758554 CCAATACCAAGGTGGAAGACAAG 59.241 47.826 1.07 0.00 40.96 3.16
5193 11279 3.721087 ATACCAAGGTGGAAGACAAGG 57.279 47.619 1.07 0.00 40.96 3.61
5194 11280 1.222567 ACCAAGGTGGAAGACAAGGT 58.777 50.000 0.18 0.00 40.96 3.50
5195 11281 1.133792 ACCAAGGTGGAAGACAAGGTG 60.134 52.381 0.18 0.00 40.96 4.00
5196 11282 0.954452 CAAGGTGGAAGACAAGGTGC 59.046 55.000 0.00 0.00 0.00 5.01
5197 11283 0.550914 AAGGTGGAAGACAAGGTGCA 59.449 50.000 0.00 0.00 0.00 4.57
5198 11284 0.550914 AGGTGGAAGACAAGGTGCAA 59.449 50.000 0.00 0.00 0.00 4.08
5199 11285 1.064017 AGGTGGAAGACAAGGTGCAAA 60.064 47.619 0.00 0.00 0.00 3.68
5200 11286 1.963515 GGTGGAAGACAAGGTGCAAAT 59.036 47.619 0.00 0.00 0.00 2.32
5201 11287 2.029918 GGTGGAAGACAAGGTGCAAATC 60.030 50.000 0.00 0.00 0.00 2.17
5202 11288 2.887152 GTGGAAGACAAGGTGCAAATCT 59.113 45.455 0.00 0.00 0.00 2.40
5203 11289 2.886523 TGGAAGACAAGGTGCAAATCTG 59.113 45.455 0.00 0.00 0.00 2.90
5204 11290 2.887152 GGAAGACAAGGTGCAAATCTGT 59.113 45.455 0.00 0.00 0.00 3.41
5205 11291 4.072131 GGAAGACAAGGTGCAAATCTGTA 58.928 43.478 0.00 0.00 0.00 2.74
5206 11292 4.083271 GGAAGACAAGGTGCAAATCTGTAC 60.083 45.833 0.00 0.00 37.43 2.90
5207 11293 4.085357 AGACAAGGTGCAAATCTGTACA 57.915 40.909 0.00 0.00 39.72 2.90
5208 11294 4.460263 AGACAAGGTGCAAATCTGTACAA 58.540 39.130 0.00 0.00 39.72 2.41
5209 11295 5.072741 AGACAAGGTGCAAATCTGTACAAT 58.927 37.500 0.00 0.00 39.72 2.71
5210 11296 5.536161 AGACAAGGTGCAAATCTGTACAATT 59.464 36.000 0.00 0.00 39.72 2.32
5211 11297 6.040842 AGACAAGGTGCAAATCTGTACAATTT 59.959 34.615 0.00 3.88 39.72 1.82
5212 11298 6.581712 ACAAGGTGCAAATCTGTACAATTTT 58.418 32.000 11.10 5.46 39.72 1.82
5213 11299 6.479660 ACAAGGTGCAAATCTGTACAATTTTG 59.520 34.615 18.91 18.91 39.72 2.44
5214 11300 6.403866 AGGTGCAAATCTGTACAATTTTGA 57.596 33.333 24.02 8.76 39.72 2.69
5215 11301 6.815089 AGGTGCAAATCTGTACAATTTTGAA 58.185 32.000 24.02 16.13 39.72 2.69
5216 11302 7.444299 AGGTGCAAATCTGTACAATTTTGAAT 58.556 30.769 24.02 6.47 39.72 2.57
5217 11303 8.584157 AGGTGCAAATCTGTACAATTTTGAATA 58.416 29.630 24.02 12.48 39.72 1.75
5218 11304 9.369904 GGTGCAAATCTGTACAATTTTGAATAT 57.630 29.630 24.02 0.00 39.72 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.202878 GTGCGCGCCATCCTTCTA 60.203 61.111 30.77 2.53 0.00 2.10
1 2 3.687321 ATGTGCGCGCCATCCTTCT 62.687 57.895 30.77 6.95 0.00 2.85
2 3 3.204827 ATGTGCGCGCCATCCTTC 61.205 61.111 30.77 10.32 0.00 3.46
3 4 3.511595 CATGTGCGCGCCATCCTT 61.512 61.111 30.77 8.08 0.00 3.36
6 7 4.479542 TTGCATGTGCGCGCCATC 62.480 61.111 30.77 21.47 45.83 3.51
7 8 4.781959 GTTGCATGTGCGCGCCAT 62.782 61.111 30.77 26.50 45.83 4.40
10 11 2.778551 TTACTGTTGCATGTGCGCGC 62.779 55.000 27.26 27.26 45.83 6.86
11 12 1.059657 GTTACTGTTGCATGTGCGCG 61.060 55.000 0.00 0.00 45.83 6.86
12 13 0.040514 TGTTACTGTTGCATGTGCGC 60.041 50.000 0.00 0.00 45.83 6.09
13 14 2.032117 TCTTGTTACTGTTGCATGTGCG 60.032 45.455 0.01 0.00 45.83 5.34
14 15 3.624326 TCTTGTTACTGTTGCATGTGC 57.376 42.857 0.00 0.00 42.50 4.57
15 16 5.581605 AGTTTCTTGTTACTGTTGCATGTG 58.418 37.500 0.00 0.00 0.00 3.21
16 17 5.835113 AGTTTCTTGTTACTGTTGCATGT 57.165 34.783 0.00 0.00 0.00 3.21
17 18 5.853282 GCTAGTTTCTTGTTACTGTTGCATG 59.147 40.000 0.00 0.00 0.00 4.06
18 19 5.334105 CGCTAGTTTCTTGTTACTGTTGCAT 60.334 40.000 0.00 0.00 0.00 3.96
19 20 4.025229 CGCTAGTTTCTTGTTACTGTTGCA 60.025 41.667 0.00 0.00 0.00 4.08
20 21 4.455124 CGCTAGTTTCTTGTTACTGTTGC 58.545 43.478 0.00 0.00 0.00 4.17
21 22 4.610680 GCCGCTAGTTTCTTGTTACTGTTG 60.611 45.833 0.00 0.00 0.00 3.33
22 23 3.497262 GCCGCTAGTTTCTTGTTACTGTT 59.503 43.478 0.00 0.00 0.00 3.16
23 24 3.064931 GCCGCTAGTTTCTTGTTACTGT 58.935 45.455 0.00 0.00 0.00 3.55
24 25 3.123621 CAGCCGCTAGTTTCTTGTTACTG 59.876 47.826 0.00 0.00 0.00 2.74
25 26 3.006537 TCAGCCGCTAGTTTCTTGTTACT 59.993 43.478 0.00 0.00 0.00 2.24
26 27 3.323243 TCAGCCGCTAGTTTCTTGTTAC 58.677 45.455 0.00 0.00 0.00 2.50
27 28 3.585862 CTCAGCCGCTAGTTTCTTGTTA 58.414 45.455 0.00 0.00 0.00 2.41
28 29 2.417719 CTCAGCCGCTAGTTTCTTGTT 58.582 47.619 0.00 0.00 0.00 2.83
29 30 1.338200 CCTCAGCCGCTAGTTTCTTGT 60.338 52.381 0.00 0.00 0.00 3.16
30 31 1.338200 ACCTCAGCCGCTAGTTTCTTG 60.338 52.381 0.00 0.00 0.00 3.02
31 32 0.977395 ACCTCAGCCGCTAGTTTCTT 59.023 50.000 0.00 0.00 0.00 2.52
32 33 0.247736 CACCTCAGCCGCTAGTTTCT 59.752 55.000 0.00 0.00 0.00 2.52
33 34 1.362406 GCACCTCAGCCGCTAGTTTC 61.362 60.000 0.00 0.00 0.00 2.78
34 35 1.376037 GCACCTCAGCCGCTAGTTT 60.376 57.895 0.00 0.00 0.00 2.66
35 36 2.266055 GCACCTCAGCCGCTAGTT 59.734 61.111 0.00 0.00 0.00 2.24
36 37 4.135153 CGCACCTCAGCCGCTAGT 62.135 66.667 0.00 0.00 0.00 2.57
53 54 0.455633 CCTTTTCATGAGCAGCACGC 60.456 55.000 0.00 0.00 42.91 5.34
54 55 1.159285 TCCTTTTCATGAGCAGCACG 58.841 50.000 0.00 0.00 0.00 5.34
55 56 4.970662 TTATCCTTTTCATGAGCAGCAC 57.029 40.909 0.00 0.00 0.00 4.40
56 57 4.340097 CCATTATCCTTTTCATGAGCAGCA 59.660 41.667 0.00 0.00 0.00 4.41
57 58 4.581824 TCCATTATCCTTTTCATGAGCAGC 59.418 41.667 0.00 0.00 0.00 5.25
58 59 5.241064 CCTCCATTATCCTTTTCATGAGCAG 59.759 44.000 0.00 0.00 0.00 4.24
59 60 5.135383 CCTCCATTATCCTTTTCATGAGCA 58.865 41.667 0.00 0.00 0.00 4.26
60 61 4.522022 CCCTCCATTATCCTTTTCATGAGC 59.478 45.833 0.00 0.00 0.00 4.26
61 62 5.945310 TCCCTCCATTATCCTTTTCATGAG 58.055 41.667 0.00 0.00 0.00 2.90
62 63 5.992564 TCCCTCCATTATCCTTTTCATGA 57.007 39.130 0.00 0.00 0.00 3.07
63 64 6.040166 CAGTTCCCTCCATTATCCTTTTCATG 59.960 42.308 0.00 0.00 0.00 3.07
64 65 6.131961 CAGTTCCCTCCATTATCCTTTTCAT 58.868 40.000 0.00 0.00 0.00 2.57
65 66 5.509498 CAGTTCCCTCCATTATCCTTTTCA 58.491 41.667 0.00 0.00 0.00 2.69
66 67 4.889995 CCAGTTCCCTCCATTATCCTTTTC 59.110 45.833 0.00 0.00 0.00 2.29
67 68 4.294970 ACCAGTTCCCTCCATTATCCTTTT 59.705 41.667 0.00 0.00 0.00 2.27
68 69 3.858638 ACCAGTTCCCTCCATTATCCTTT 59.141 43.478 0.00 0.00 0.00 3.11
69 70 3.203040 CACCAGTTCCCTCCATTATCCTT 59.797 47.826 0.00 0.00 0.00 3.36
70 71 2.780010 CACCAGTTCCCTCCATTATCCT 59.220 50.000 0.00 0.00 0.00 3.24
71 72 2.158608 CCACCAGTTCCCTCCATTATCC 60.159 54.545 0.00 0.00 0.00 2.59
72 73 2.777692 TCCACCAGTTCCCTCCATTATC 59.222 50.000 0.00 0.00 0.00 1.75
73 74 2.858644 TCCACCAGTTCCCTCCATTAT 58.141 47.619 0.00 0.00 0.00 1.28
74 75 2.352561 TCCACCAGTTCCCTCCATTA 57.647 50.000 0.00 0.00 0.00 1.90
75 76 1.455822 TTCCACCAGTTCCCTCCATT 58.544 50.000 0.00 0.00 0.00 3.16
76 77 1.566231 GATTCCACCAGTTCCCTCCAT 59.434 52.381 0.00 0.00 0.00 3.41
77 78 0.991920 GATTCCACCAGTTCCCTCCA 59.008 55.000 0.00 0.00 0.00 3.86
78 79 1.290134 AGATTCCACCAGTTCCCTCC 58.710 55.000 0.00 0.00 0.00 4.30
79 80 3.084786 CAAAGATTCCACCAGTTCCCTC 58.915 50.000 0.00 0.00 0.00 4.30
80 81 2.716424 TCAAAGATTCCACCAGTTCCCT 59.284 45.455 0.00 0.00 0.00 4.20
81 82 3.154827 TCAAAGATTCCACCAGTTCCC 57.845 47.619 0.00 0.00 0.00 3.97
82 83 5.012893 AGAATCAAAGATTCCACCAGTTCC 58.987 41.667 14.29 0.00 0.00 3.62
83 84 6.581171 AAGAATCAAAGATTCCACCAGTTC 57.419 37.500 14.29 0.00 0.00 3.01
84 85 6.983906 AAAGAATCAAAGATTCCACCAGTT 57.016 33.333 14.29 1.32 0.00 3.16
85 86 6.983906 AAAAGAATCAAAGATTCCACCAGT 57.016 33.333 14.29 0.00 0.00 4.00
86 87 7.664758 AGAAAAAGAATCAAAGATTCCACCAG 58.335 34.615 14.29 0.00 0.00 4.00
87 88 7.601705 AGAAAAAGAATCAAAGATTCCACCA 57.398 32.000 14.29 0.00 0.00 4.17
88 89 8.893219 AAAGAAAAAGAATCAAAGATTCCACC 57.107 30.769 14.29 2.96 0.00 4.61
89 90 9.755804 AGAAAGAAAAAGAATCAAAGATTCCAC 57.244 29.630 14.29 4.48 0.00 4.02
123 124 9.617523 ATTCATTTGTCATTTGGGATAATTTCC 57.382 29.630 0.00 0.00 44.62 3.13
191 192 9.341899 GCCCGCTTAATTTATCAAAGTATTATG 57.658 33.333 0.00 0.00 0.00 1.90
192 193 8.234546 CGCCCGCTTAATTTATCAAAGTATTAT 58.765 33.333 0.00 0.00 0.00 1.28
193 194 7.441760 TCGCCCGCTTAATTTATCAAAGTATTA 59.558 33.333 0.00 0.00 0.00 0.98
194 195 6.261381 TCGCCCGCTTAATTTATCAAAGTATT 59.739 34.615 0.00 0.00 0.00 1.89
195 196 5.761234 TCGCCCGCTTAATTTATCAAAGTAT 59.239 36.000 0.00 0.00 0.00 2.12
196 197 5.117584 TCGCCCGCTTAATTTATCAAAGTA 58.882 37.500 0.00 0.00 0.00 2.24
197 198 3.942748 TCGCCCGCTTAATTTATCAAAGT 59.057 39.130 0.00 0.00 0.00 2.66
198 199 4.527564 CTCGCCCGCTTAATTTATCAAAG 58.472 43.478 0.00 0.00 0.00 2.77
199 200 3.242936 GCTCGCCCGCTTAATTTATCAAA 60.243 43.478 0.00 0.00 0.00 2.69
200 201 2.289547 GCTCGCCCGCTTAATTTATCAA 59.710 45.455 0.00 0.00 0.00 2.57
201 202 1.871039 GCTCGCCCGCTTAATTTATCA 59.129 47.619 0.00 0.00 0.00 2.15
202 203 1.136336 CGCTCGCCCGCTTAATTTATC 60.136 52.381 0.00 0.00 0.00 1.75
203 204 0.865769 CGCTCGCCCGCTTAATTTAT 59.134 50.000 0.00 0.00 0.00 1.40
204 205 1.155424 CCGCTCGCCCGCTTAATTTA 61.155 55.000 0.00 0.00 0.00 1.40
205 206 2.469516 CCGCTCGCCCGCTTAATTT 61.470 57.895 0.00 0.00 0.00 1.82
206 207 2.895372 CCGCTCGCCCGCTTAATT 60.895 61.111 0.00 0.00 0.00 1.40
217 218 2.817834 TTCAATTCCCGCCGCTCG 60.818 61.111 0.00 0.00 38.08 5.03
218 219 2.761195 GGTTCAATTCCCGCCGCTC 61.761 63.158 0.00 0.00 0.00 5.03
219 220 2.750237 GGTTCAATTCCCGCCGCT 60.750 61.111 0.00 0.00 0.00 5.52
220 221 3.822192 GGGTTCAATTCCCGCCGC 61.822 66.667 0.00 0.00 35.27 6.53
225 226 4.127907 GAGAAGATACGGGTTCAATTCCC 58.872 47.826 0.00 0.00 41.41 3.97
226 227 4.127907 GGAGAAGATACGGGTTCAATTCC 58.872 47.826 0.00 0.00 0.00 3.01
227 228 5.024785 AGGAGAAGATACGGGTTCAATTC 57.975 43.478 0.00 0.00 0.00 2.17
228 229 5.186198 CAAGGAGAAGATACGGGTTCAATT 58.814 41.667 0.00 0.00 0.00 2.32
229 230 4.384208 CCAAGGAGAAGATACGGGTTCAAT 60.384 45.833 0.00 0.00 0.00 2.57
230 231 3.055385 CCAAGGAGAAGATACGGGTTCAA 60.055 47.826 0.00 0.00 0.00 2.69
231 232 2.500098 CCAAGGAGAAGATACGGGTTCA 59.500 50.000 0.00 0.00 0.00 3.18
232 233 2.742204 GCCAAGGAGAAGATACGGGTTC 60.742 54.545 0.00 0.00 0.00 3.62
233 234 1.209747 GCCAAGGAGAAGATACGGGTT 59.790 52.381 0.00 0.00 0.00 4.11
234 235 0.831307 GCCAAGGAGAAGATACGGGT 59.169 55.000 0.00 0.00 0.00 5.28
235 236 0.830648 TGCCAAGGAGAAGATACGGG 59.169 55.000 0.00 0.00 0.00 5.28
236 237 2.555199 CTTGCCAAGGAGAAGATACGG 58.445 52.381 0.00 0.00 0.00 4.02
248 249 6.645790 ATGCTAAAATATCTCCTTGCCAAG 57.354 37.500 0.00 0.00 0.00 3.61
249 250 6.606796 TCAATGCTAAAATATCTCCTTGCCAA 59.393 34.615 0.00 0.00 0.00 4.52
250 251 6.128486 TCAATGCTAAAATATCTCCTTGCCA 58.872 36.000 0.00 0.00 0.00 4.92
251 252 6.639632 TCAATGCTAAAATATCTCCTTGCC 57.360 37.500 0.00 0.00 0.00 4.52
252 253 7.710896 AGTTCAATGCTAAAATATCTCCTTGC 58.289 34.615 0.00 0.00 0.00 4.01
254 255 9.905713 TGTAGTTCAATGCTAAAATATCTCCTT 57.094 29.630 0.00 0.00 0.00 3.36
255 256 9.331282 GTGTAGTTCAATGCTAAAATATCTCCT 57.669 33.333 0.00 0.00 0.00 3.69
256 257 9.331282 AGTGTAGTTCAATGCTAAAATATCTCC 57.669 33.333 0.00 0.00 0.00 3.71
258 259 9.035607 CGAGTGTAGTTCAATGCTAAAATATCT 57.964 33.333 0.00 0.00 0.00 1.98
259 260 7.794349 GCGAGTGTAGTTCAATGCTAAAATATC 59.206 37.037 0.00 0.00 0.00 1.63
260 261 7.495934 AGCGAGTGTAGTTCAATGCTAAAATAT 59.504 33.333 0.00 0.00 31.16 1.28
261 262 6.816640 AGCGAGTGTAGTTCAATGCTAAAATA 59.183 34.615 0.00 0.00 31.16 1.40
262 263 5.643777 AGCGAGTGTAGTTCAATGCTAAAAT 59.356 36.000 0.00 0.00 31.16 1.82
263 264 4.994852 AGCGAGTGTAGTTCAATGCTAAAA 59.005 37.500 0.00 0.00 31.16 1.52
264 265 4.566004 AGCGAGTGTAGTTCAATGCTAAA 58.434 39.130 0.00 0.00 31.16 1.85
265 266 4.188247 AGCGAGTGTAGTTCAATGCTAA 57.812 40.909 0.00 0.00 31.16 3.09
266 267 3.868757 AGCGAGTGTAGTTCAATGCTA 57.131 42.857 0.00 0.00 31.16 3.49
267 268 2.751166 AGCGAGTGTAGTTCAATGCT 57.249 45.000 0.00 0.00 0.00 3.79
268 269 3.246226 CCATAGCGAGTGTAGTTCAATGC 59.754 47.826 0.00 0.00 0.00 3.56
269 270 4.433615 ACCATAGCGAGTGTAGTTCAATG 58.566 43.478 0.00 0.00 0.00 2.82
270 271 4.737855 ACCATAGCGAGTGTAGTTCAAT 57.262 40.909 0.00 0.00 0.00 2.57
271 272 5.847111 ATACCATAGCGAGTGTAGTTCAA 57.153 39.130 0.00 0.00 0.00 2.69
272 273 8.674607 CATATATACCATAGCGAGTGTAGTTCA 58.325 37.037 0.00 0.00 0.00 3.18
273 274 7.644551 GCATATATACCATAGCGAGTGTAGTTC 59.355 40.741 0.00 0.00 0.00 3.01
274 275 7.122204 TGCATATATACCATAGCGAGTGTAGTT 59.878 37.037 0.00 0.00 0.00 2.24
275 276 6.602009 TGCATATATACCATAGCGAGTGTAGT 59.398 38.462 0.00 0.00 0.00 2.73
276 277 7.027778 TGCATATATACCATAGCGAGTGTAG 57.972 40.000 0.00 0.00 0.00 2.74
277 278 7.399245 TTGCATATATACCATAGCGAGTGTA 57.601 36.000 0.00 0.00 0.00 2.90
278 279 5.914898 TGCATATATACCATAGCGAGTGT 57.085 39.130 0.00 0.00 0.00 3.55
279 280 7.595311 TTTTGCATATATACCATAGCGAGTG 57.405 36.000 0.00 0.00 0.00 3.51
280 281 9.534565 CTATTTTGCATATATACCATAGCGAGT 57.465 33.333 0.00 0.00 0.00 4.18
281 282 9.750125 TCTATTTTGCATATATACCATAGCGAG 57.250 33.333 0.00 0.00 0.00 5.03
311 312 9.620259 TGGTTTGCATATGATATACTTTGTGTA 57.380 29.630 6.97 0.00 35.37 2.90
312 313 8.518430 TGGTTTGCATATGATATACTTTGTGT 57.482 30.769 6.97 0.00 0.00 3.72
313 314 8.839343 TCTGGTTTGCATATGATATACTTTGTG 58.161 33.333 6.97 0.00 0.00 3.33
314 315 8.978874 TCTGGTTTGCATATGATATACTTTGT 57.021 30.769 6.97 0.00 0.00 2.83
319 320 9.973246 CGTATTTCTGGTTTGCATATGATATAC 57.027 33.333 6.97 0.09 0.00 1.47
320 321 9.936759 TCGTATTTCTGGTTTGCATATGATATA 57.063 29.630 6.97 0.00 0.00 0.86
321 322 8.846943 TCGTATTTCTGGTTTGCATATGATAT 57.153 30.769 6.97 0.00 0.00 1.63
322 323 8.720562 CATCGTATTTCTGGTTTGCATATGATA 58.279 33.333 6.97 0.00 29.00 2.15
323 324 7.229306 ACATCGTATTTCTGGTTTGCATATGAT 59.771 33.333 6.97 0.00 29.71 2.45
324 325 6.542005 ACATCGTATTTCTGGTTTGCATATGA 59.458 34.615 6.97 0.00 0.00 2.15
325 326 6.634035 CACATCGTATTTCTGGTTTGCATATG 59.366 38.462 0.00 0.00 0.00 1.78
326 327 6.542005 TCACATCGTATTTCTGGTTTGCATAT 59.458 34.615 0.00 0.00 0.00 1.78
327 328 5.877564 TCACATCGTATTTCTGGTTTGCATA 59.122 36.000 0.00 0.00 0.00 3.14
328 329 4.699735 TCACATCGTATTTCTGGTTTGCAT 59.300 37.500 0.00 0.00 0.00 3.96
329 330 4.068599 TCACATCGTATTTCTGGTTTGCA 58.931 39.130 0.00 0.00 0.00 4.08
330 331 4.678509 TCACATCGTATTTCTGGTTTGC 57.321 40.909 0.00 0.00 0.00 3.68
331 332 7.857389 CCAATATCACATCGTATTTCTGGTTTG 59.143 37.037 0.00 0.00 0.00 2.93
332 333 7.773224 TCCAATATCACATCGTATTTCTGGTTT 59.227 33.333 0.00 0.00 0.00 3.27
333 334 7.279615 TCCAATATCACATCGTATTTCTGGTT 58.720 34.615 0.00 0.00 0.00 3.67
334 335 6.826668 TCCAATATCACATCGTATTTCTGGT 58.173 36.000 0.00 0.00 0.00 4.00
335 336 6.128445 GCTCCAATATCACATCGTATTTCTGG 60.128 42.308 0.00 0.00 0.00 3.86
336 337 6.424812 TGCTCCAATATCACATCGTATTTCTG 59.575 38.462 0.00 0.00 0.00 3.02
337 338 6.425114 GTGCTCCAATATCACATCGTATTTCT 59.575 38.462 0.00 0.00 0.00 2.52
338 339 6.347725 GGTGCTCCAATATCACATCGTATTTC 60.348 42.308 0.00 0.00 32.69 2.17
339 340 5.470098 GGTGCTCCAATATCACATCGTATTT 59.530 40.000 0.00 0.00 32.69 1.40
340 341 4.997395 GGTGCTCCAATATCACATCGTATT 59.003 41.667 0.00 0.00 32.69 1.89
341 342 4.284490 AGGTGCTCCAATATCACATCGTAT 59.716 41.667 7.70 0.00 35.89 3.06
342 343 3.641436 AGGTGCTCCAATATCACATCGTA 59.359 43.478 7.70 0.00 35.89 3.43
343 344 2.435805 AGGTGCTCCAATATCACATCGT 59.564 45.455 7.70 0.00 35.89 3.73
344 345 2.804527 CAGGTGCTCCAATATCACATCG 59.195 50.000 7.70 0.00 35.89 3.84
345 346 4.077300 TCAGGTGCTCCAATATCACATC 57.923 45.455 7.70 0.00 35.89 3.06
346 347 4.080129 AGTTCAGGTGCTCCAATATCACAT 60.080 41.667 7.70 0.00 35.89 3.21
347 348 3.264193 AGTTCAGGTGCTCCAATATCACA 59.736 43.478 7.70 0.00 35.89 3.58
348 349 3.878778 AGTTCAGGTGCTCCAATATCAC 58.121 45.455 7.70 0.00 35.89 3.06
349 350 4.264253 CAAGTTCAGGTGCTCCAATATCA 58.736 43.478 7.70 0.00 35.89 2.15
350 351 3.629398 CCAAGTTCAGGTGCTCCAATATC 59.371 47.826 7.70 0.00 35.89 1.63
351 352 3.266772 TCCAAGTTCAGGTGCTCCAATAT 59.733 43.478 7.70 0.00 35.89 1.28
352 353 2.642311 TCCAAGTTCAGGTGCTCCAATA 59.358 45.455 7.70 0.00 35.89 1.90
353 354 1.425066 TCCAAGTTCAGGTGCTCCAAT 59.575 47.619 7.70 0.00 35.89 3.16
354 355 0.843309 TCCAAGTTCAGGTGCTCCAA 59.157 50.000 7.70 0.00 35.89 3.53
355 356 0.108585 GTCCAAGTTCAGGTGCTCCA 59.891 55.000 7.70 0.00 35.89 3.86
356 357 0.108585 TGTCCAAGTTCAGGTGCTCC 59.891 55.000 0.00 0.00 0.00 4.70
357 358 1.517242 CTGTCCAAGTTCAGGTGCTC 58.483 55.000 0.00 0.00 0.00 4.26
358 359 0.536006 GCTGTCCAAGTTCAGGTGCT 60.536 55.000 0.00 0.00 32.94 4.40
359 360 0.819259 TGCTGTCCAAGTTCAGGTGC 60.819 55.000 0.00 0.00 32.94 5.01
360 361 1.605710 CTTGCTGTCCAAGTTCAGGTG 59.394 52.381 0.00 0.00 44.74 4.00
361 362 1.972872 CTTGCTGTCCAAGTTCAGGT 58.027 50.000 0.00 0.00 44.74 4.00
376 377 0.308993 GCCACGCATATCTTCCTTGC 59.691 55.000 0.00 0.00 0.00 4.01
382 383 4.758692 CGAGGCCACGCATATCTT 57.241 55.556 10.32 0.00 0.00 2.40
401 402 0.297820 GATTTAAGACCGCACGCGAG 59.702 55.000 15.93 5.97 42.83 5.03
402 403 0.108992 AGATTTAAGACCGCACGCGA 60.109 50.000 15.93 0.00 42.83 5.87
403 404 1.552226 TAGATTTAAGACCGCACGCG 58.448 50.000 3.53 3.53 39.44 6.01
404 405 4.921515 TCATATAGATTTAAGACCGCACGC 59.078 41.667 0.00 0.00 0.00 5.34
405 406 7.582435 ATTCATATAGATTTAAGACCGCACG 57.418 36.000 0.00 0.00 0.00 5.34
422 423 9.941325 TGTGGTTAGCAAAATCAAAATTCATAT 57.059 25.926 0.00 0.00 0.00 1.78
423 424 9.941325 ATGTGGTTAGCAAAATCAAAATTCATA 57.059 25.926 0.00 0.00 0.00 2.15
424 425 8.723311 CATGTGGTTAGCAAAATCAAAATTCAT 58.277 29.630 0.00 0.00 0.00 2.57
425 426 7.714377 ACATGTGGTTAGCAAAATCAAAATTCA 59.286 29.630 0.00 0.00 0.00 2.57
426 427 8.086851 ACATGTGGTTAGCAAAATCAAAATTC 57.913 30.769 0.00 0.00 0.00 2.17
427 428 7.173047 GGACATGTGGTTAGCAAAATCAAAATT 59.827 33.333 1.15 0.00 0.00 1.82
428 429 6.650390 GGACATGTGGTTAGCAAAATCAAAAT 59.350 34.615 1.15 0.00 0.00 1.82
429 430 5.988561 GGACATGTGGTTAGCAAAATCAAAA 59.011 36.000 1.15 0.00 0.00 2.44
430 431 5.510520 GGGACATGTGGTTAGCAAAATCAAA 60.511 40.000 1.15 0.00 0.00 2.69
431 432 4.021544 GGGACATGTGGTTAGCAAAATCAA 60.022 41.667 1.15 0.00 0.00 2.57
432 433 3.509575 GGGACATGTGGTTAGCAAAATCA 59.490 43.478 1.15 0.00 0.00 2.57
433 434 3.509575 TGGGACATGTGGTTAGCAAAATC 59.490 43.478 1.15 0.00 0.00 2.17
434 435 3.505386 TGGGACATGTGGTTAGCAAAAT 58.495 40.909 1.15 0.00 0.00 1.82
435 436 2.950781 TGGGACATGTGGTTAGCAAAA 58.049 42.857 1.15 0.00 0.00 2.44
436 437 2.666272 TGGGACATGTGGTTAGCAAA 57.334 45.000 1.15 0.00 0.00 3.68
463 464 3.479269 GAAAGACCGCACGCGAGG 61.479 66.667 15.93 15.90 42.83 4.63
682 685 1.561643 TGGCACAAACAGGGTTGAAA 58.438 45.000 3.71 0.00 31.92 2.69
916 1195 3.206211 GATGCGAGCGAGGAGGAGG 62.206 68.421 0.00 0.00 0.00 4.30
917 1196 2.334653 GATGCGAGCGAGGAGGAG 59.665 66.667 0.00 0.00 0.00 3.69
918 1197 3.586961 CGATGCGAGCGAGGAGGA 61.587 66.667 0.00 0.00 0.00 3.71
1183 1465 3.244582 TCTAGGGCTACTCAACAAACCA 58.755 45.455 0.00 0.00 0.00 3.67
1251 1533 3.266510 TGCGCAGAAATCTATCAACCT 57.733 42.857 5.66 0.00 0.00 3.50
1429 1713 6.774354 TGACTGTAGATAACAAAAACGGAC 57.226 37.500 0.00 0.00 37.74 4.79
1584 1868 8.523915 AATAACATGCCATCTTAAGATCAACA 57.476 30.769 15.24 13.23 31.21 3.33
1594 1878 8.355169 CAGCAAATAGTAATAACATGCCATCTT 58.645 33.333 0.00 0.00 0.00 2.40
1600 1884 5.916883 CCAGCAGCAAATAGTAATAACATGC 59.083 40.000 0.00 0.00 0.00 4.06
1601 1885 7.263100 TCCAGCAGCAAATAGTAATAACATG 57.737 36.000 0.00 0.00 0.00 3.21
1602 1886 7.880160 TTCCAGCAGCAAATAGTAATAACAT 57.120 32.000 0.00 0.00 0.00 2.71
1780 2068 9.477484 AATAGATATTTACACAATCTCCGTGTC 57.523 33.333 0.00 0.00 44.11 3.67
1854 2142 3.214253 TGAGCTGCAGATCCCTCG 58.786 61.111 27.97 0.00 0.00 4.63
1967 2255 0.380378 GACGCCAGCAGAAAACACAA 59.620 50.000 0.00 0.00 0.00 3.33
2018 2306 2.287547 CCGTGTTTTCCATGTGAACTGG 60.288 50.000 0.00 0.00 31.05 4.00
2059 2347 9.620259 TTGTGCATACCAGATAATATTTACACA 57.380 29.630 0.00 0.00 0.00 3.72
2331 2658 2.550830 TTGGAGACTTGCAAGAGGAC 57.449 50.000 32.50 18.62 30.57 3.85
2343 2670 9.899226 GGCTTATGATTATACAAAATTGGAGAC 57.101 33.333 0.00 0.00 0.00 3.36
2389 2716 4.850193 CCCACATGGCAAGGACTT 57.150 55.556 0.00 0.00 0.00 3.01
2408 2735 4.441356 GGATCACAAAAACTGACAAGGCAA 60.441 41.667 0.00 0.00 0.00 4.52
2411 2738 3.636300 TGGGATCACAAAAACTGACAAGG 59.364 43.478 0.00 0.00 0.00 3.61
2514 2841 8.576442 ACATTATGTTCTTTACTTTTGGAGTGG 58.424 33.333 0.00 0.00 39.48 4.00
2640 2967 6.934645 ACAATCACTGCTAAGCTTAGTAACAA 59.065 34.615 29.42 15.71 33.32 2.83
2641 2968 6.464222 ACAATCACTGCTAAGCTTAGTAACA 58.536 36.000 29.42 19.63 33.32 2.41
2894 3240 6.128309 ACAAACCAATTCAAGAAGCACAAAAC 60.128 34.615 0.00 0.00 0.00 2.43
3307 6088 7.468922 TCAACTAGAATCGATGCAACAATAG 57.531 36.000 6.08 0.66 0.00 1.73
3756 6537 9.264719 CCTAAACAGCAATGAAAAGAAAGAATT 57.735 29.630 0.00 0.00 0.00 2.17
4181 6966 1.266718 GCCACGTCATCTGCAAAAAGA 59.733 47.619 0.00 0.00 0.00 2.52
4479 7271 7.342284 ACAAGCAGGTAGTAGTATTGTCTATGT 59.658 37.037 0.00 0.00 0.00 2.29
4531 7442 6.567687 TTTCGAGCCACAGATAAAATTGAA 57.432 33.333 0.00 0.00 0.00 2.69
4657 7571 8.340443 CAACGACAACAATCATCATCAATATCT 58.660 33.333 0.00 0.00 0.00 1.98
4803 7717 8.385898 TCAACTATAACCAAGTTTGTTTCGAT 57.614 30.769 0.00 0.00 34.99 3.59
4809 7723 6.659242 CCCTGATCAACTATAACCAAGTTTGT 59.341 38.462 0.00 0.00 34.99 2.83
4810 7724 6.095440 CCCCTGATCAACTATAACCAAGTTTG 59.905 42.308 0.00 0.00 34.99 2.93
4811 7725 6.011981 TCCCCTGATCAACTATAACCAAGTTT 60.012 38.462 0.00 0.00 34.99 2.66
4813 7727 5.036916 TCCCCTGATCAACTATAACCAAGT 58.963 41.667 0.00 0.00 0.00 3.16
4814 7728 5.630415 TCCCCTGATCAACTATAACCAAG 57.370 43.478 0.00 0.00 0.00 3.61
4815 7729 5.690097 GCATCCCCTGATCAACTATAACCAA 60.690 44.000 0.00 0.00 0.00 3.67
4816 7730 4.202461 GCATCCCCTGATCAACTATAACCA 60.202 45.833 0.00 0.00 0.00 3.67
4817 7731 4.202461 TGCATCCCCTGATCAACTATAACC 60.202 45.833 0.00 0.00 0.00 2.85
4819 7733 5.569428 CGATGCATCCCCTGATCAACTATAA 60.569 44.000 20.87 0.00 0.00 0.98
4821 7735 3.307269 CGATGCATCCCCTGATCAACTAT 60.307 47.826 20.87 0.00 0.00 2.12
4867 10946 2.309136 AAACTGGGTCATGGGGAAAG 57.691 50.000 0.00 0.00 0.00 2.62
4949 11034 2.975075 CAGATGGAAGGAGGGAGATCT 58.025 52.381 0.00 0.00 0.00 2.75
5071 11157 4.717629 TCGTCGGAGCAACGCTGG 62.718 66.667 0.00 0.00 39.88 4.85
5077 11163 5.640357 ACTTTTAACATATTCGTCGGAGCAA 59.360 36.000 0.00 0.00 0.00 3.91
5078 11164 5.172934 ACTTTTAACATATTCGTCGGAGCA 58.827 37.500 0.00 0.00 0.00 4.26
5095 11181 8.726988 CCGACATTCAATCTCCTTTTACTTTTA 58.273 33.333 0.00 0.00 0.00 1.52
5096 11182 7.230712 ACCGACATTCAATCTCCTTTTACTTTT 59.769 33.333 0.00 0.00 0.00 2.27
5104 11190 5.316987 AGAAAACCGACATTCAATCTCCTT 58.683 37.500 0.00 0.00 0.00 3.36
5106 11192 6.927294 ATAGAAAACCGACATTCAATCTCC 57.073 37.500 0.00 0.00 0.00 3.71
5144 11230 9.344772 GGACTGAAGAATATACTAGACTTCTCA 57.655 37.037 0.00 0.39 38.10 3.27
5145 11231 8.789762 GGGACTGAAGAATATACTAGACTTCTC 58.210 40.741 0.00 0.00 38.10 2.87
5146 11232 8.282982 TGGGACTGAAGAATATACTAGACTTCT 58.717 37.037 0.00 0.00 38.10 2.85
5147 11233 8.466617 TGGGACTGAAGAATATACTAGACTTC 57.533 38.462 0.00 0.00 37.87 3.01
5148 11234 8.840200 TTGGGACTGAAGAATATACTAGACTT 57.160 34.615 0.00 0.00 0.00 3.01
5151 11237 9.310449 GGTATTGGGACTGAAGAATATACTAGA 57.690 37.037 0.00 0.00 0.00 2.43
5152 11238 9.090103 TGGTATTGGGACTGAAGAATATACTAG 57.910 37.037 0.00 0.00 0.00 2.57
5153 11239 9.442062 TTGGTATTGGGACTGAAGAATATACTA 57.558 33.333 0.00 0.00 0.00 1.82
5154 11240 7.931015 TGGTATTGGGACTGAAGAATATACT 57.069 36.000 0.00 0.00 0.00 2.12
5155 11241 7.661847 CCTTGGTATTGGGACTGAAGAATATAC 59.338 40.741 0.00 0.00 0.00 1.47
5156 11242 7.349859 ACCTTGGTATTGGGACTGAAGAATATA 59.650 37.037 0.00 0.00 0.00 0.86
5157 11243 6.160459 ACCTTGGTATTGGGACTGAAGAATAT 59.840 38.462 0.00 0.00 0.00 1.28
5158 11244 5.491078 ACCTTGGTATTGGGACTGAAGAATA 59.509 40.000 0.00 0.00 0.00 1.75
5159 11245 4.292306 ACCTTGGTATTGGGACTGAAGAAT 59.708 41.667 0.00 0.00 0.00 2.40
5160 11246 3.655777 ACCTTGGTATTGGGACTGAAGAA 59.344 43.478 0.00 0.00 0.00 2.52
5161 11247 3.009033 CACCTTGGTATTGGGACTGAAGA 59.991 47.826 0.00 0.00 0.00 2.87
5162 11248 3.347216 CACCTTGGTATTGGGACTGAAG 58.653 50.000 0.00 0.00 0.00 3.02
5163 11249 2.041081 CCACCTTGGTATTGGGACTGAA 59.959 50.000 0.00 0.00 31.35 3.02
5164 11250 1.633432 CCACCTTGGTATTGGGACTGA 59.367 52.381 0.00 0.00 31.35 3.41
5165 11251 1.633432 TCCACCTTGGTATTGGGACTG 59.367 52.381 0.00 0.00 39.03 3.51
5166 11252 2.053747 TCCACCTTGGTATTGGGACT 57.946 50.000 0.00 0.00 39.03 3.85
5167 11253 2.307686 TCTTCCACCTTGGTATTGGGAC 59.692 50.000 0.00 0.00 39.03 4.46
5168 11254 2.307686 GTCTTCCACCTTGGTATTGGGA 59.692 50.000 0.00 0.00 39.03 4.37
5169 11255 2.041081 TGTCTTCCACCTTGGTATTGGG 59.959 50.000 0.00 0.00 39.03 4.12
5170 11256 3.433306 TGTCTTCCACCTTGGTATTGG 57.567 47.619 0.00 0.00 39.03 3.16
5171 11257 3.758554 CCTTGTCTTCCACCTTGGTATTG 59.241 47.826 0.00 0.00 39.03 1.90
5172 11258 3.397955 ACCTTGTCTTCCACCTTGGTATT 59.602 43.478 0.00 0.00 39.03 1.89
5173 11259 2.986728 ACCTTGTCTTCCACCTTGGTAT 59.013 45.455 0.00 0.00 39.03 2.73
5174 11260 2.105821 CACCTTGTCTTCCACCTTGGTA 59.894 50.000 0.00 0.00 39.03 3.25
5175 11261 1.133792 CACCTTGTCTTCCACCTTGGT 60.134 52.381 0.00 0.00 39.03 3.67
5176 11262 1.609208 CACCTTGTCTTCCACCTTGG 58.391 55.000 0.00 0.00 39.43 3.61
5177 11263 0.954452 GCACCTTGTCTTCCACCTTG 59.046 55.000 0.00 0.00 0.00 3.61
5178 11264 0.550914 TGCACCTTGTCTTCCACCTT 59.449 50.000 0.00 0.00 0.00 3.50
5179 11265 0.550914 TTGCACCTTGTCTTCCACCT 59.449 50.000 0.00 0.00 0.00 4.00
5180 11266 1.398692 TTTGCACCTTGTCTTCCACC 58.601 50.000 0.00 0.00 0.00 4.61
5181 11267 2.887152 AGATTTGCACCTTGTCTTCCAC 59.113 45.455 0.00 0.00 0.00 4.02
5182 11268 2.886523 CAGATTTGCACCTTGTCTTCCA 59.113 45.455 0.00 0.00 0.00 3.53
5183 11269 2.887152 ACAGATTTGCACCTTGTCTTCC 59.113 45.455 0.00 0.00 0.00 3.46
5184 11270 4.515191 TGTACAGATTTGCACCTTGTCTTC 59.485 41.667 0.00 0.00 0.00 2.87
5185 11271 4.460263 TGTACAGATTTGCACCTTGTCTT 58.540 39.130 0.00 0.00 0.00 3.01
5186 11272 4.085357 TGTACAGATTTGCACCTTGTCT 57.915 40.909 0.00 0.00 0.00 3.41
5187 11273 4.829064 TTGTACAGATTTGCACCTTGTC 57.171 40.909 0.00 0.00 0.00 3.18
5188 11274 5.789643 AATTGTACAGATTTGCACCTTGT 57.210 34.783 0.00 0.00 0.00 3.16
5189 11275 6.700960 TCAAAATTGTACAGATTTGCACCTTG 59.299 34.615 21.51 12.94 33.81 3.61
5190 11276 6.815089 TCAAAATTGTACAGATTTGCACCTT 58.185 32.000 21.51 4.86 33.81 3.50
5191 11277 6.403866 TCAAAATTGTACAGATTTGCACCT 57.596 33.333 21.51 5.36 33.81 4.00
5192 11278 7.656707 ATTCAAAATTGTACAGATTTGCACC 57.343 32.000 21.51 0.00 33.81 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.