Multiple sequence alignment - TraesCS1D01G129100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G129100 chr1D 100.000 4595 0 0 4104 8698 142341871 142337277 0.000000e+00 8486.0
1 TraesCS1D01G129100 chr1D 100.000 3796 0 0 1 3796 142345974 142342179 0.000000e+00 7011.0
2 TraesCS1D01G129100 chr1D 96.000 300 9 3 4247 4545 268331135 268331432 1.310000e-132 484.0
3 TraesCS1D01G129100 chr1D 75.975 487 94 18 201 675 212492832 212493307 6.790000e-56 230.0
4 TraesCS1D01G129100 chr1B 94.496 3216 114 36 1 3188 195383764 195380584 0.000000e+00 4900.0
5 TraesCS1D01G129100 chr1B 94.901 2079 69 13 6248 8296 195375785 195373714 0.000000e+00 3217.0
6 TraesCS1D01G129100 chr1B 94.392 1266 58 10 4520 5778 195379434 195378175 0.000000e+00 1932.0
7 TraesCS1D01G129100 chr1B 88.511 618 28 17 3194 3796 195380526 195379937 0.000000e+00 708.0
8 TraesCS1D01G129100 chr1B 94.395 446 16 2 5772 6214 195376227 195375788 0.000000e+00 676.0
9 TraesCS1D01G129100 chr1B 76.375 491 87 22 201 675 302795279 302794802 4.060000e-58 237.0
10 TraesCS1D01G129100 chr1B 73.540 548 103 26 154 675 394003515 394004046 4.180000e-38 171.0
11 TraesCS1D01G129100 chr1B 96.078 51 2 0 8246 8296 195373622 195373572 5.600000e-12 84.2
12 TraesCS1D01G129100 chr1A 94.486 2684 98 13 4602 7263 147678139 147680794 0.000000e+00 4091.0
13 TraesCS1D01G129100 chr1A 95.995 2447 67 14 762 3188 147674666 147677101 0.000000e+00 3947.0
14 TraesCS1D01G129100 chr1A 94.308 1423 45 13 7249 8660 147682118 147683515 0.000000e+00 2146.0
15 TraesCS1D01G129100 chr1A 92.047 767 43 9 1 758 147669927 147670684 0.000000e+00 1062.0
16 TraesCS1D01G129100 chr1A 92.857 616 29 9 3194 3796 147677159 147677772 0.000000e+00 880.0
17 TraesCS1D01G129100 chr1A 85.161 155 14 6 4104 4258 147677850 147677995 5.440000e-32 150.0
18 TraesCS1D01G129100 chr6D 97.260 292 6 2 4255 4545 61311526 61311236 2.180000e-135 494.0
19 TraesCS1D01G129100 chr6D 96.928 293 9 0 4253 4545 14268262 14267970 7.850000e-135 492.0
20 TraesCS1D01G129100 chr2D 97.260 292 6 2 4255 4545 596846703 596846993 2.180000e-135 494.0
21 TraesCS1D01G129100 chr2D 79.671 669 96 30 17 672 142468332 142468973 6.200000e-121 446.0
22 TraesCS1D01G129100 chr2D 76.818 220 25 15 3421 3617 542190184 542189968 5.560000e-17 100.0
23 TraesCS1D01G129100 chr7D 96.928 293 9 0 4253 4545 40665335 40665627 7.850000e-135 492.0
24 TraesCS1D01G129100 chr7D 96.309 298 8 3 4253 4549 170070470 170070175 3.650000e-133 486.0
25 TraesCS1D01G129100 chr7D 96.564 291 10 0 4255 4545 549157881 549158171 4.720000e-132 483.0
26 TraesCS1D01G129100 chr4D 96.918 292 9 0 4255 4546 165707266 165707557 2.820000e-134 490.0
27 TraesCS1D01G129100 chr5D 96.575 292 8 2 4253 4543 319926015 319926305 4.720000e-132 483.0
28 TraesCS1D01G129100 chr5D 75.249 703 129 34 1 674 353429192 353429878 8.540000e-75 292.0
29 TraesCS1D01G129100 chr5D 84.416 77 9 3 3404 3480 255372556 255372483 1.210000e-08 73.1
30 TraesCS1D01G129100 chr2A 77.097 620 99 32 77 675 368469392 368469989 1.410000e-82 318.0
31 TraesCS1D01G129100 chr2A 83.817 241 34 5 437 675 185258805 185259042 3.160000e-54 224.0
32 TraesCS1D01G129100 chr7A 96.512 86 3 0 2200 2285 732858903 732858818 9.100000e-30 143.0
33 TraesCS1D01G129100 chr7A 96.512 86 3 0 2200 2285 732859640 732859725 9.100000e-30 143.0
34 TraesCS1D01G129100 chr6A 74.448 317 53 15 91 406 548429028 548428739 2.570000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G129100 chr1D 142337277 142345974 8697 True 7748.500000 8486 100.000000 1 8698 2 chr1D.!!$R1 8697
1 TraesCS1D01G129100 chr1B 195373572 195383764 10192 True 1919.533333 4900 93.795500 1 8296 6 chr1B.!!$R2 8295
2 TraesCS1D01G129100 chr1A 147669927 147683515 13588 False 2046.000000 4091 92.475667 1 8660 6 chr1A.!!$F1 8659
3 TraesCS1D01G129100 chr2D 142468332 142468973 641 False 446.000000 446 79.671000 17 672 1 chr2D.!!$F1 655
4 TraesCS1D01G129100 chr5D 353429192 353429878 686 False 292.000000 292 75.249000 1 674 1 chr5D.!!$F2 673
5 TraesCS1D01G129100 chr2A 368469392 368469989 597 False 318.000000 318 77.097000 77 675 1 chr2A.!!$F2 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 317 0.249073 CGTAACTCCGATCAGGCTGG 60.249 60.000 15.73 0.00 40.77 4.85 F
1507 5526 1.202114 CTGGGCCGTAACGTTGTAGTA 59.798 52.381 11.99 0.00 0.00 1.82 F
2245 6281 0.038892 TTACTCAAGTCCCACGACGC 60.039 55.000 0.00 0.00 44.28 5.19 F
2947 6984 0.253044 TGTGGATAAGCAGTCCAGGC 59.747 55.000 5.13 0.00 45.91 4.85 F
4153 8336 0.105964 AGCCGAACTACACAGCACAA 59.894 50.000 0.00 0.00 0.00 3.33 F
4458 8641 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20 F
4460 8643 0.103390 GCCCGCTTACCTTCTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20 F
5461 9734 0.600255 ACGCCTTCTGTAGTGCACAC 60.600 55.000 21.04 15.19 32.33 3.82 F
6096 12330 0.850100 TTCCTGTTCCTTCCTTGCCA 59.150 50.000 0.00 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1625 5645 2.046285 CACAGCGACCCCATTTCCC 61.046 63.158 0.00 0.00 0.00 3.97 R
3191 7229 0.320374 CACAAAGGCTCGGTGGAGTA 59.680 55.000 9.86 0.00 42.53 2.59 R
4133 8316 0.105964 TGTGCTGTGTAGTTCGGCTT 59.894 50.000 0.00 0.00 37.96 4.35 R
4439 8622 0.103390 GAGAGAAGGTAAGCGGGCTC 59.897 60.000 0.00 0.00 0.00 4.70 R
5433 9706 0.317479 ACAGAAGGCGTGACACTACC 59.683 55.000 3.68 5.25 0.00 3.18 R
6034 12268 0.589708 CTGGTGCATCTGTGTGTGTG 59.410 55.000 0.00 0.00 0.00 3.82 R
6270 12504 3.881688 CTCAAGCTCCTGATTACCAATGG 59.118 47.826 0.00 0.00 0.00 3.16 R
7010 13258 0.482446 ATTCCAGAAGCACAACCCCA 59.518 50.000 0.00 0.00 0.00 4.96 R
7962 15566 0.321653 ACTGTGATGAACTTCCCGCC 60.322 55.000 0.00 0.00 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 85 4.003788 AACGCCACCGGGACAGAG 62.004 66.667 6.32 0.00 39.22 3.35
118 127 3.333804 CTCCTTCTTCTTGCTTGGACTC 58.666 50.000 0.00 0.00 0.00 3.36
246 262 4.698304 TCTTCTGTGTTCAGTTCCGTTTTT 59.302 37.500 0.00 0.00 41.91 1.94
301 317 0.249073 CGTAACTCCGATCAGGCTGG 60.249 60.000 15.73 0.00 40.77 4.85
439 474 1.656587 AGTGTCTTGTGAGGCCCATA 58.343 50.000 0.00 0.00 0.00 2.74
478 513 8.424274 TGCGCCATACATTTAGATATATTCAG 57.576 34.615 4.18 0.00 0.00 3.02
647 685 9.407380 AGAAATATGTAAAAGTGGTATGATGCA 57.593 29.630 0.00 0.00 0.00 3.96
741 780 3.680777 AAAAGTCCCTGTTTTCCCTCA 57.319 42.857 0.00 0.00 0.00 3.86
744 783 3.229697 AGTCCCTGTTTTCCCTCAAAG 57.770 47.619 0.00 0.00 0.00 2.77
1507 5526 1.202114 CTGGGCCGTAACGTTGTAGTA 59.798 52.381 11.99 0.00 0.00 1.82
1539 5558 2.202566 GCATTTCGAGTACCTAGTGCC 58.797 52.381 0.00 0.00 0.00 5.01
1625 5645 1.238439 AATCACGGTGTTTGCTGAGG 58.762 50.000 8.17 0.00 0.00 3.86
1662 5682 1.001406 TGGGGTTTATTTTGGCTTGCG 59.999 47.619 0.00 0.00 0.00 4.85
1761 5781 3.909732 TGGGTGTCATTTTTCTGGAAGT 58.090 40.909 0.00 0.00 33.76 3.01
1789 5809 4.021981 AGGCTTTCAGCTATTTGTTGGTTC 60.022 41.667 0.00 0.00 41.99 3.62
1858 5878 8.484214 AACCAGATATATGAAGAGCTTAGTCA 57.516 34.615 0.00 0.00 0.00 3.41
2121 6150 2.035066 GTATGAGTTCATGGCCAATGGC 59.965 50.000 17.42 17.42 41.80 4.40
2158 6187 6.364701 CATCTTTACCCAAATGGAGGTATGA 58.635 40.000 0.00 0.00 38.41 2.15
2241 6277 3.399330 ACATTGTTACTCAAGTCCCACG 58.601 45.455 0.00 0.00 39.55 4.94
2244 6280 1.001048 TGTTACTCAAGTCCCACGACG 60.001 52.381 0.00 0.00 44.28 5.12
2245 6281 0.038892 TTACTCAAGTCCCACGACGC 60.039 55.000 0.00 0.00 44.28 5.19
2472 6508 6.044404 AGTTGGAGGAGGAAAGAAATAGACAA 59.956 38.462 0.00 0.00 0.00 3.18
2473 6509 6.642733 TGGAGGAGGAAAGAAATAGACAAT 57.357 37.500 0.00 0.00 0.00 2.71
2474 6510 7.032598 TGGAGGAGGAAAGAAATAGACAATT 57.967 36.000 0.00 0.00 0.00 2.32
2475 6511 8.158025 TGGAGGAGGAAAGAAATAGACAATTA 57.842 34.615 0.00 0.00 0.00 1.40
2478 6514 9.320352 GAGGAGGAAAGAAATAGACAATTAGAC 57.680 37.037 0.00 0.00 0.00 2.59
2479 6515 8.826765 AGGAGGAAAGAAATAGACAATTAGACA 58.173 33.333 0.00 0.00 0.00 3.41
2663 6700 4.036852 GCTTTACAACCTTCAACTCTTGCT 59.963 41.667 0.00 0.00 0.00 3.91
2787 6824 5.181056 CGCCTTAATATGATGCCATGTAACA 59.819 40.000 0.00 0.00 34.31 2.41
2851 6888 7.158697 TGTCAGCTAACTGCATAAAGAACTTA 58.841 34.615 0.00 0.00 44.10 2.24
2852 6889 7.824289 TGTCAGCTAACTGCATAAAGAACTTAT 59.176 33.333 0.00 0.00 44.10 1.73
2887 6924 7.944729 ATTCAGGCTGCTATTTAGAGAAAAA 57.055 32.000 10.34 0.00 0.00 1.94
2915 6952 7.712205 AGGTATTTAATGCAATTTTCTCATGCC 59.288 33.333 0.00 0.00 37.87 4.40
2947 6984 0.253044 TGTGGATAAGCAGTCCAGGC 59.747 55.000 5.13 0.00 45.91 4.85
2951 6988 1.474143 GGATAAGCAGTCCAGGCTGTC 60.474 57.143 14.43 6.30 41.66 3.51
2976 7013 1.015109 CATGGCATCTGAGTCAGCAC 58.985 55.000 15.72 6.79 0.00 4.40
2984 7021 1.344438 TCTGAGTCAGCACGAAACCAT 59.656 47.619 15.72 0.00 0.00 3.55
3188 7226 2.728690 TTGATGCTTGAATGTGTGGC 57.271 45.000 0.00 0.00 0.00 5.01
3191 7229 2.563620 TGATGCTTGAATGTGTGGCAAT 59.436 40.909 0.00 0.00 36.49 3.56
3192 7230 3.762823 TGATGCTTGAATGTGTGGCAATA 59.237 39.130 0.00 0.00 36.49 1.90
3300 7390 4.047166 TGGTCTATCATGGTTGATCCCTT 58.953 43.478 0.00 0.00 41.73 3.95
3443 7543 1.134431 GGAAGCGTTTATTACCCCCGA 60.134 52.381 0.00 0.00 0.00 5.14
3521 7626 9.101655 CAAGAAAAATGATCTCAACCAAAAAGT 57.898 29.630 0.00 0.00 0.00 2.66
3522 7627 9.671279 AAGAAAAATGATCTCAACCAAAAAGTT 57.329 25.926 0.00 0.00 0.00 2.66
3523 7628 9.671279 AGAAAAATGATCTCAACCAAAAAGTTT 57.329 25.926 0.00 0.00 0.00 2.66
3552 7657 8.970859 ACCAAAAGATCCAGATAATAACTCAG 57.029 34.615 0.00 0.00 0.00 3.35
3617 7722 3.494626 CGTCATCCAAATCGGGACATAAG 59.505 47.826 0.00 0.00 40.44 1.73
3657 7762 2.281761 CACTTGGCGCCAACCTCT 60.282 61.111 37.30 17.00 0.00 3.69
3661 7766 1.153449 TTGGCGCCAACCTCTATCG 60.153 57.895 37.30 0.00 0.00 2.92
3699 7804 6.239402 GCTCCTTTTGTAATAATGCCCATGAT 60.239 38.462 0.00 0.00 0.00 2.45
3733 7840 1.485895 TGCATGAGTAGCACCTGCATA 59.514 47.619 0.00 0.00 45.16 3.14
3734 7841 2.141517 GCATGAGTAGCACCTGCATAG 58.858 52.381 0.00 0.00 45.16 2.23
3746 7853 4.457257 GCACCTGCATAGAAGAGAACTTTT 59.543 41.667 0.00 0.00 41.59 2.27
3786 7893 3.084536 TCATTCCTGCATAGCCAAACA 57.915 42.857 0.00 0.00 0.00 2.83
4137 8320 3.320826 AGGTGGTGTGATGTTAAAAAGCC 59.679 43.478 0.00 0.00 0.00 4.35
4138 8321 3.305110 GTGGTGTGATGTTAAAAAGCCG 58.695 45.455 0.00 0.00 0.00 5.52
4142 8325 4.261447 GGTGTGATGTTAAAAAGCCGAACT 60.261 41.667 0.00 0.00 0.00 3.01
4143 8326 5.049267 GGTGTGATGTTAAAAAGCCGAACTA 60.049 40.000 0.00 0.00 0.00 2.24
4144 8327 5.849604 GTGTGATGTTAAAAAGCCGAACTAC 59.150 40.000 0.00 0.00 0.00 2.73
4145 8328 5.527951 TGTGATGTTAAAAAGCCGAACTACA 59.472 36.000 0.00 0.00 0.00 2.74
4146 8329 5.849604 GTGATGTTAAAAAGCCGAACTACAC 59.150 40.000 0.00 0.00 0.00 2.90
4147 8330 5.527951 TGATGTTAAAAAGCCGAACTACACA 59.472 36.000 0.00 0.00 0.00 3.72
4148 8331 5.412526 TGTTAAAAAGCCGAACTACACAG 57.587 39.130 0.00 0.00 0.00 3.66
4149 8332 4.216731 GTTAAAAAGCCGAACTACACAGC 58.783 43.478 0.00 0.00 0.00 4.40
4150 8333 1.961793 AAAAGCCGAACTACACAGCA 58.038 45.000 0.00 0.00 0.00 4.41
4151 8334 1.226746 AAAGCCGAACTACACAGCAC 58.773 50.000 0.00 0.00 0.00 4.40
4153 8336 0.105964 AGCCGAACTACACAGCACAA 59.894 50.000 0.00 0.00 0.00 3.33
4155 8338 1.577468 CCGAACTACACAGCACAACA 58.423 50.000 0.00 0.00 0.00 3.33
4156 8339 1.260561 CCGAACTACACAGCACAACAC 59.739 52.381 0.00 0.00 0.00 3.32
4159 8342 2.691409 ACTACACAGCACAACACACT 57.309 45.000 0.00 0.00 0.00 3.55
4160 8343 2.985896 ACTACACAGCACAACACACTT 58.014 42.857 0.00 0.00 0.00 3.16
4161 8344 4.131649 ACTACACAGCACAACACACTTA 57.868 40.909 0.00 0.00 0.00 2.24
4162 8345 4.119862 ACTACACAGCACAACACACTTAG 58.880 43.478 0.00 0.00 0.00 2.18
4163 8346 1.670811 ACACAGCACAACACACTTAGC 59.329 47.619 0.00 0.00 0.00 3.09
4164 8347 1.002468 CACAGCACAACACACTTAGCC 60.002 52.381 0.00 0.00 0.00 3.93
4165 8348 1.308047 CAGCACAACACACTTAGCCA 58.692 50.000 0.00 0.00 0.00 4.75
4166 8349 1.002468 CAGCACAACACACTTAGCCAC 60.002 52.381 0.00 0.00 0.00 5.01
4167 8350 1.134098 AGCACAACACACTTAGCCACT 60.134 47.619 0.00 0.00 0.00 4.00
4195 8378 7.925483 CACAATCAAAGAAAAGGTGTTGGATAA 59.075 33.333 0.00 0.00 0.00 1.75
4215 8398 6.531594 GGATAATTTCCTGCAAAAGCTACAAC 59.468 38.462 0.00 0.00 41.78 3.32
4234 8417 2.920384 TGTGTCCGCCTGCCACTA 60.920 61.111 0.00 0.00 0.00 2.74
4248 8431 5.449999 GCCTGCCACTAACGCTTTATTAAAT 60.450 40.000 0.00 0.00 0.00 1.40
4253 8436 8.347035 TGCCACTAACGCTTTATTAAATTATCC 58.653 33.333 0.00 0.00 0.00 2.59
4254 8437 8.565416 GCCACTAACGCTTTATTAAATTATCCT 58.435 33.333 0.00 0.00 0.00 3.24
4261 8444 9.555727 ACGCTTTATTAAATTATCCTTAGAGCA 57.444 29.630 0.00 0.00 0.00 4.26
4277 8460 8.750298 TCCTTAGAGCATGGTTAATAGTATAGC 58.250 37.037 0.00 0.00 0.00 2.97
4278 8461 7.982354 CCTTAGAGCATGGTTAATAGTATAGCC 59.018 40.741 0.00 0.00 0.00 3.93
4279 8462 6.935240 AGAGCATGGTTAATAGTATAGCCA 57.065 37.500 0.00 3.65 39.96 4.75
4280 8463 6.940739 AGAGCATGGTTAATAGTATAGCCAG 58.059 40.000 0.00 2.11 39.18 4.85
4281 8464 5.491982 AGCATGGTTAATAGTATAGCCAGC 58.508 41.667 0.00 8.73 39.18 4.85
4282 8465 5.249393 AGCATGGTTAATAGTATAGCCAGCT 59.751 40.000 0.00 0.00 39.18 4.24
4283 8466 5.352569 GCATGGTTAATAGTATAGCCAGCTG 59.647 44.000 6.78 6.78 39.18 4.24
4284 8467 6.701340 CATGGTTAATAGTATAGCCAGCTGA 58.299 40.000 17.39 0.00 39.18 4.26
4285 8468 6.935240 TGGTTAATAGTATAGCCAGCTGAT 57.065 37.500 17.39 5.91 32.02 2.90
4286 8469 6.701340 TGGTTAATAGTATAGCCAGCTGATG 58.299 40.000 17.39 0.00 32.02 3.07
4306 8489 1.972872 GCTATAAGCCAGTGCCATGT 58.027 50.000 0.00 0.00 38.69 3.21
4307 8490 1.876156 GCTATAAGCCAGTGCCATGTC 59.124 52.381 0.00 0.00 38.69 3.06
4308 8491 2.746142 GCTATAAGCCAGTGCCATGTCA 60.746 50.000 0.00 0.00 38.69 3.58
4309 8492 2.742428 ATAAGCCAGTGCCATGTCAT 57.258 45.000 0.00 0.00 38.69 3.06
4310 8493 2.042686 TAAGCCAGTGCCATGTCATC 57.957 50.000 0.00 0.00 38.69 2.92
4311 8494 0.330604 AAGCCAGTGCCATGTCATCT 59.669 50.000 0.00 0.00 38.69 2.90
4312 8495 1.206878 AGCCAGTGCCATGTCATCTA 58.793 50.000 0.00 0.00 38.69 1.98
4313 8496 1.134280 AGCCAGTGCCATGTCATCTAC 60.134 52.381 0.00 0.00 38.69 2.59
4314 8497 1.407299 GCCAGTGCCATGTCATCTACA 60.407 52.381 0.00 0.00 43.86 2.74
4315 8498 2.558378 CCAGTGCCATGTCATCTACAG 58.442 52.381 0.00 0.00 42.70 2.74
4316 8499 1.938577 CAGTGCCATGTCATCTACAGC 59.061 52.381 0.00 0.00 42.70 4.40
4317 8500 1.836166 AGTGCCATGTCATCTACAGCT 59.164 47.619 0.00 0.00 42.70 4.24
4318 8501 2.158986 AGTGCCATGTCATCTACAGCTC 60.159 50.000 0.00 0.00 42.70 4.09
4319 8502 1.832998 TGCCATGTCATCTACAGCTCA 59.167 47.619 0.00 0.00 42.70 4.26
4320 8503 2.436911 TGCCATGTCATCTACAGCTCAT 59.563 45.455 0.00 0.00 42.70 2.90
4321 8504 3.065655 GCCATGTCATCTACAGCTCATC 58.934 50.000 0.00 0.00 42.70 2.92
4322 8505 3.244146 GCCATGTCATCTACAGCTCATCT 60.244 47.826 0.00 0.00 42.70 2.90
4323 8506 4.743045 GCCATGTCATCTACAGCTCATCTT 60.743 45.833 0.00 0.00 42.70 2.40
4324 8507 5.510349 GCCATGTCATCTACAGCTCATCTTA 60.510 44.000 0.00 0.00 42.70 2.10
4325 8508 6.699366 CCATGTCATCTACAGCTCATCTTAT 58.301 40.000 0.00 0.00 42.70 1.73
4326 8509 7.578380 GCCATGTCATCTACAGCTCATCTTATA 60.578 40.741 0.00 0.00 42.70 0.98
4327 8510 7.975058 CCATGTCATCTACAGCTCATCTTATAG 59.025 40.741 0.00 0.00 42.70 1.31
4328 8511 6.918626 TGTCATCTACAGCTCATCTTATAGC 58.081 40.000 0.00 0.00 39.08 2.97
4329 8512 6.071672 TGTCATCTACAGCTCATCTTATAGCC 60.072 42.308 0.00 0.00 39.64 3.93
4330 8513 6.012745 TCATCTACAGCTCATCTTATAGCCA 58.987 40.000 0.00 0.00 39.64 4.75
4331 8514 6.494835 TCATCTACAGCTCATCTTATAGCCAA 59.505 38.462 0.00 0.00 39.64 4.52
4332 8515 6.090483 TCTACAGCTCATCTTATAGCCAAC 57.910 41.667 0.00 0.00 39.64 3.77
4333 8516 4.760530 ACAGCTCATCTTATAGCCAACA 57.239 40.909 0.00 0.00 39.64 3.33
4334 8517 5.301835 ACAGCTCATCTTATAGCCAACAT 57.698 39.130 0.00 0.00 39.64 2.71
4335 8518 5.061853 ACAGCTCATCTTATAGCCAACATG 58.938 41.667 0.00 0.00 39.64 3.21
4336 8519 5.061853 CAGCTCATCTTATAGCCAACATGT 58.938 41.667 0.00 0.00 39.64 3.21
4337 8520 6.183361 ACAGCTCATCTTATAGCCAACATGTA 60.183 38.462 0.00 0.00 39.64 2.29
4338 8521 6.146837 CAGCTCATCTTATAGCCAACATGTAC 59.853 42.308 0.00 0.00 39.64 2.90
4339 8522 5.991606 GCTCATCTTATAGCCAACATGTACA 59.008 40.000 0.00 0.00 32.40 2.90
4340 8523 6.483307 GCTCATCTTATAGCCAACATGTACAA 59.517 38.462 0.00 0.00 32.40 2.41
4341 8524 7.173907 GCTCATCTTATAGCCAACATGTACAAT 59.826 37.037 0.00 0.00 32.40 2.71
4342 8525 9.710900 CTCATCTTATAGCCAACATGTACAATA 57.289 33.333 0.00 0.00 0.00 1.90
4343 8526 9.710900 TCATCTTATAGCCAACATGTACAATAG 57.289 33.333 0.00 0.00 0.00 1.73
4344 8527 9.494271 CATCTTATAGCCAACATGTACAATAGT 57.506 33.333 0.00 0.00 0.00 2.12
4350 8533 7.124573 AGCCAACATGTACAATAGTAGATCA 57.875 36.000 0.00 0.00 32.38 2.92
4351 8534 7.564793 AGCCAACATGTACAATAGTAGATCAA 58.435 34.615 0.00 0.00 32.38 2.57
4352 8535 8.046708 AGCCAACATGTACAATAGTAGATCAAA 58.953 33.333 0.00 0.00 32.38 2.69
4353 8536 8.673711 GCCAACATGTACAATAGTAGATCAAAA 58.326 33.333 0.00 0.00 32.38 2.44
4390 8573 7.487822 TTTTTATTATGTGGCCCATCTTTCA 57.512 32.000 9.67 0.00 34.86 2.69
4391 8574 7.673641 TTTTATTATGTGGCCCATCTTTCAT 57.326 32.000 9.67 0.00 34.86 2.57
4392 8575 7.673641 TTTATTATGTGGCCCATCTTTCATT 57.326 32.000 9.67 0.00 34.86 2.57
4393 8576 5.796424 ATTATGTGGCCCATCTTTCATTC 57.204 39.130 9.67 0.00 34.86 2.67
4394 8577 2.905415 TGTGGCCCATCTTTCATTCT 57.095 45.000 0.00 0.00 0.00 2.40
4395 8578 2.726821 TGTGGCCCATCTTTCATTCTC 58.273 47.619 0.00 0.00 0.00 2.87
4396 8579 2.041485 TGTGGCCCATCTTTCATTCTCA 59.959 45.455 0.00 0.00 0.00 3.27
4397 8580 2.424956 GTGGCCCATCTTTCATTCTCAC 59.575 50.000 0.00 0.00 0.00 3.51
4398 8581 2.041485 TGGCCCATCTTTCATTCTCACA 59.959 45.455 0.00 0.00 0.00 3.58
4399 8582 3.091545 GGCCCATCTTTCATTCTCACAA 58.908 45.455 0.00 0.00 0.00 3.33
4400 8583 3.511146 GGCCCATCTTTCATTCTCACAAA 59.489 43.478 0.00 0.00 0.00 2.83
4401 8584 4.381292 GGCCCATCTTTCATTCTCACAAAG 60.381 45.833 0.00 0.00 0.00 2.77
4402 8585 4.219288 GCCCATCTTTCATTCTCACAAAGT 59.781 41.667 0.00 0.00 0.00 2.66
4403 8586 5.706916 CCCATCTTTCATTCTCACAAAGTG 58.293 41.667 0.00 0.00 34.45 3.16
4404 8587 5.159209 CCATCTTTCATTCTCACAAAGTGC 58.841 41.667 0.00 0.00 32.98 4.40
4405 8588 4.836125 TCTTTCATTCTCACAAAGTGCC 57.164 40.909 0.00 0.00 32.98 5.01
4406 8589 4.464008 TCTTTCATTCTCACAAAGTGCCT 58.536 39.130 0.00 0.00 32.98 4.75
4407 8590 5.620206 TCTTTCATTCTCACAAAGTGCCTA 58.380 37.500 0.00 0.00 32.98 3.93
4408 8591 5.702670 TCTTTCATTCTCACAAAGTGCCTAG 59.297 40.000 0.00 0.00 32.98 3.02
4409 8592 3.942829 TCATTCTCACAAAGTGCCTAGG 58.057 45.455 3.67 3.67 32.98 3.02
4410 8593 3.582647 TCATTCTCACAAAGTGCCTAGGA 59.417 43.478 14.75 0.00 32.98 2.94
4411 8594 3.685139 TTCTCACAAAGTGCCTAGGAG 57.315 47.619 14.75 0.00 32.98 3.69
4412 8595 1.276421 TCTCACAAAGTGCCTAGGAGC 59.724 52.381 14.75 3.68 32.98 4.70
4413 8596 1.002430 CTCACAAAGTGCCTAGGAGCA 59.998 52.381 14.75 0.22 41.46 4.26
4428 8611 3.418714 GCACATGCTAGAGCTGGC 58.581 61.111 2.72 0.00 42.66 4.85
4429 8612 1.153208 GCACATGCTAGAGCTGGCT 60.153 57.895 7.36 0.00 42.66 4.75
4430 8613 1.159098 GCACATGCTAGAGCTGGCTC 61.159 60.000 14.02 14.02 42.66 4.70
4438 8621 4.996976 GAGCTGGCTCTTCACGAA 57.003 55.556 14.51 0.00 39.80 3.85
4439 8622 2.748268 GAGCTGGCTCTTCACGAAG 58.252 57.895 14.51 0.08 39.80 3.79
4440 8623 0.244994 GAGCTGGCTCTTCACGAAGA 59.755 55.000 14.51 9.08 44.47 2.87
4446 8629 2.261671 TCTTCACGAAGAGCCCGC 59.738 61.111 5.38 0.00 42.06 6.13
4447 8630 2.262915 CTTCACGAAGAGCCCGCT 59.737 61.111 0.20 0.00 40.79 5.52
4448 8631 1.374758 CTTCACGAAGAGCCCGCTT 60.375 57.895 0.20 0.00 40.79 4.68
4449 8632 0.108804 CTTCACGAAGAGCCCGCTTA 60.109 55.000 0.20 0.00 40.79 3.09
4450 8633 0.389426 TTCACGAAGAGCCCGCTTAC 60.389 55.000 0.00 0.00 0.00 2.34
4451 8634 1.810030 CACGAAGAGCCCGCTTACC 60.810 63.158 0.00 0.00 0.00 2.85
4452 8635 1.982938 ACGAAGAGCCCGCTTACCT 60.983 57.895 0.00 0.00 0.00 3.08
4453 8636 1.218316 CGAAGAGCCCGCTTACCTT 59.782 57.895 0.00 0.00 0.00 3.50
4454 8637 0.806492 CGAAGAGCCCGCTTACCTTC 60.806 60.000 6.57 6.57 0.00 3.46
4455 8638 0.537653 GAAGAGCCCGCTTACCTTCT 59.462 55.000 8.59 0.00 32.72 2.85
4456 8639 0.537653 AAGAGCCCGCTTACCTTCTC 59.462 55.000 0.00 0.00 0.00 2.87
4457 8640 0.324830 AGAGCCCGCTTACCTTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
4458 8641 0.103390 GAGCCCGCTTACCTTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
4459 8642 0.324830 AGCCCGCTTACCTTCTCTCT 60.325 55.000 0.00 0.00 0.00 3.10
4460 8643 0.103390 GCCCGCTTACCTTCTCTCTC 59.897 60.000 0.00 0.00 0.00 3.20
4461 8644 0.747852 CCCGCTTACCTTCTCTCTCC 59.252 60.000 0.00 0.00 0.00 3.71
4462 8645 1.686741 CCCGCTTACCTTCTCTCTCCT 60.687 57.143 0.00 0.00 0.00 3.69
4463 8646 1.679153 CCGCTTACCTTCTCTCTCCTC 59.321 57.143 0.00 0.00 0.00 3.71
4464 8647 2.650322 CGCTTACCTTCTCTCTCCTCT 58.350 52.381 0.00 0.00 0.00 3.69
4465 8648 3.020984 CGCTTACCTTCTCTCTCCTCTT 58.979 50.000 0.00 0.00 0.00 2.85
4466 8649 3.066203 CGCTTACCTTCTCTCTCCTCTTC 59.934 52.174 0.00 0.00 0.00 2.87
4467 8650 4.278310 GCTTACCTTCTCTCTCCTCTTCT 58.722 47.826 0.00 0.00 0.00 2.85
4468 8651 4.338400 GCTTACCTTCTCTCTCCTCTTCTC 59.662 50.000 0.00 0.00 0.00 2.87
4469 8652 5.755849 CTTACCTTCTCTCTCCTCTTCTCT 58.244 45.833 0.00 0.00 0.00 3.10
4470 8653 4.675063 ACCTTCTCTCTCCTCTTCTCTT 57.325 45.455 0.00 0.00 0.00 2.85
4471 8654 5.010708 ACCTTCTCTCTCCTCTTCTCTTT 57.989 43.478 0.00 0.00 0.00 2.52
4472 8655 5.016831 ACCTTCTCTCTCCTCTTCTCTTTC 58.983 45.833 0.00 0.00 0.00 2.62
4473 8656 4.402474 CCTTCTCTCTCCTCTTCTCTTTCC 59.598 50.000 0.00 0.00 0.00 3.13
4474 8657 4.946160 TCTCTCTCCTCTTCTCTTTCCT 57.054 45.455 0.00 0.00 0.00 3.36
4475 8658 4.855340 TCTCTCTCCTCTTCTCTTTCCTC 58.145 47.826 0.00 0.00 0.00 3.71
4476 8659 3.954258 CTCTCTCCTCTTCTCTTTCCTCC 59.046 52.174 0.00 0.00 0.00 4.30
4477 8660 3.335183 TCTCTCCTCTTCTCTTTCCTCCA 59.665 47.826 0.00 0.00 0.00 3.86
4478 8661 4.093011 CTCTCCTCTTCTCTTTCCTCCAA 58.907 47.826 0.00 0.00 0.00 3.53
4479 8662 3.835395 TCTCCTCTTCTCTTTCCTCCAAC 59.165 47.826 0.00 0.00 0.00 3.77
4480 8663 3.837731 CTCCTCTTCTCTTTCCTCCAACT 59.162 47.826 0.00 0.00 0.00 3.16
4481 8664 5.011982 TCCTCTTCTCTTTCCTCCAACTA 57.988 43.478 0.00 0.00 0.00 2.24
4482 8665 5.403512 TCCTCTTCTCTTTCCTCCAACTAA 58.596 41.667 0.00 0.00 0.00 2.24
4483 8666 5.482175 TCCTCTTCTCTTTCCTCCAACTAAG 59.518 44.000 0.00 0.00 0.00 2.18
4484 8667 5.153950 TCTTCTCTTTCCTCCAACTAAGC 57.846 43.478 0.00 0.00 0.00 3.09
4485 8668 4.593206 TCTTCTCTTTCCTCCAACTAAGCA 59.407 41.667 0.00 0.00 0.00 3.91
4486 8669 4.543590 TCTCTTTCCTCCAACTAAGCAG 57.456 45.455 0.00 0.00 0.00 4.24
4487 8670 4.160329 TCTCTTTCCTCCAACTAAGCAGA 58.840 43.478 0.00 0.00 0.00 4.26
4488 8671 4.593206 TCTCTTTCCTCCAACTAAGCAGAA 59.407 41.667 0.00 0.00 0.00 3.02
4489 8672 5.071788 TCTCTTTCCTCCAACTAAGCAGAAA 59.928 40.000 0.00 0.00 0.00 2.52
4490 8673 5.880901 TCTTTCCTCCAACTAAGCAGAAAT 58.119 37.500 0.00 0.00 0.00 2.17
4491 8674 7.016153 TCTTTCCTCCAACTAAGCAGAAATA 57.984 36.000 0.00 0.00 0.00 1.40
4492 8675 7.633789 TCTTTCCTCCAACTAAGCAGAAATAT 58.366 34.615 0.00 0.00 0.00 1.28
4493 8676 8.768397 TCTTTCCTCCAACTAAGCAGAAATATA 58.232 33.333 0.00 0.00 0.00 0.86
4494 8677 8.732746 TTTCCTCCAACTAAGCAGAAATATAC 57.267 34.615 0.00 0.00 0.00 1.47
4495 8678 7.676683 TCCTCCAACTAAGCAGAAATATACT 57.323 36.000 0.00 0.00 0.00 2.12
4496 8679 8.777578 TCCTCCAACTAAGCAGAAATATACTA 57.222 34.615 0.00 0.00 0.00 1.82
4497 8680 8.861086 TCCTCCAACTAAGCAGAAATATACTAG 58.139 37.037 0.00 0.00 0.00 2.57
4498 8681 8.643324 CCTCCAACTAAGCAGAAATATACTAGT 58.357 37.037 0.00 0.00 0.00 2.57
4516 8699 5.791666 ACTAGTTTATTCCTTATAGCCCGC 58.208 41.667 0.00 0.00 0.00 6.13
4517 8700 4.976540 AGTTTATTCCTTATAGCCCGCT 57.023 40.909 0.00 0.00 0.00 5.52
4518 8701 4.642429 AGTTTATTCCTTATAGCCCGCTG 58.358 43.478 0.00 0.00 0.00 5.18
4519 8702 4.347000 AGTTTATTCCTTATAGCCCGCTGA 59.653 41.667 0.00 0.00 0.00 4.26
4520 8703 2.841442 ATTCCTTATAGCCCGCTGAC 57.159 50.000 0.00 0.00 0.00 3.51
4521 8704 1.789523 TTCCTTATAGCCCGCTGACT 58.210 50.000 0.00 0.00 0.00 3.41
4522 8705 1.329256 TCCTTATAGCCCGCTGACTC 58.671 55.000 0.00 0.00 0.00 3.36
4523 8706 1.040646 CCTTATAGCCCGCTGACTCA 58.959 55.000 0.00 0.00 0.00 3.41
4524 8707 1.000283 CCTTATAGCCCGCTGACTCAG 60.000 57.143 1.21 1.21 34.12 3.35
4540 8723 6.968263 TGACTCAGCTCTATTATACTTGCT 57.032 37.500 0.00 0.00 0.00 3.91
4629 8900 5.527582 AGACGCCATAACCATTTTGATCTAC 59.472 40.000 0.00 0.00 0.00 2.59
4658 8929 3.390135 TCGCTTATCCATTAAAGCCGAG 58.610 45.455 1.78 0.00 44.17 4.63
4684 8955 2.423185 TGGAGTGCACAGAAAACACTTG 59.577 45.455 21.04 0.00 44.40 3.16
4701 8972 2.039084 ACTTGTGTGGTCTGAAGATCCC 59.961 50.000 0.00 0.00 0.00 3.85
4785 9056 7.185318 TCCAATCAATTAAATGCTGTCCAAT 57.815 32.000 0.00 0.00 0.00 3.16
4786 9057 7.042950 TCCAATCAATTAAATGCTGTCCAATG 58.957 34.615 0.00 0.00 0.00 2.82
4791 9062 6.433716 TCAATTAAATGCTGTCCAATGAGTGA 59.566 34.615 0.00 0.00 0.00 3.41
4819 9090 9.058174 TGTCGAAAATCAACCAAAGTATTCTAA 57.942 29.630 0.00 0.00 0.00 2.10
4824 9095 6.753107 ATCAACCAAAGTATTCTAAACCCG 57.247 37.500 0.00 0.00 0.00 5.28
4825 9096 5.867330 TCAACCAAAGTATTCTAAACCCGA 58.133 37.500 0.00 0.00 0.00 5.14
4827 9098 6.205270 TCAACCAAAGTATTCTAAACCCGAAC 59.795 38.462 0.00 0.00 0.00 3.95
4839 9111 1.800315 CCCGAACACAGCGTCTACG 60.800 63.158 0.00 0.00 43.27 3.51
4935 9207 2.235016 TGTTCCCATAAACACACTGGC 58.765 47.619 0.00 0.00 34.31 4.85
4968 9240 6.653320 TCTCTACCTTAAACGATGCAAATTGT 59.347 34.615 0.00 0.00 0.00 2.71
5004 9276 6.385176 TCTTCACCATCATTAGTCTCTTCCAT 59.615 38.462 0.00 0.00 0.00 3.41
5433 9706 8.879759 ACGAATTTGAGTATAGGTACAATGTTG 58.120 33.333 0.00 0.00 33.09 3.33
5461 9734 0.600255 ACGCCTTCTGTAGTGCACAC 60.600 55.000 21.04 15.19 32.33 3.82
5594 9868 8.426569 AATATCAATGCTATTGGCTTGGTATT 57.573 30.769 12.50 12.50 38.68 1.89
5595 9869 5.518848 TCAATGCTATTGGCTTGGTATTG 57.481 39.130 8.40 8.11 42.39 1.90
5642 9919 5.351465 CGTCTGCTGGTGTCAGTTTATTTAT 59.649 40.000 0.00 0.00 42.78 1.40
5732 10009 3.589988 AGAACTTGCTTGTCCTATCGTG 58.410 45.455 0.00 0.00 0.00 4.35
5826 12057 7.544217 GTGAAGTTGTTTATCTTGTGTTTGGTT 59.456 33.333 0.00 0.00 0.00 3.67
5941 12175 9.561270 GAAGGTAAATTAGCATTTTCAGAAGAC 57.439 33.333 4.96 0.00 34.29 3.01
6033 12267 3.119495 GCAAGGCAAAATGTACTACCAGG 60.119 47.826 0.00 0.00 0.00 4.45
6034 12268 2.723273 AGGCAAAATGTACTACCAGGC 58.277 47.619 0.00 0.00 0.00 4.85
6096 12330 0.850100 TTCCTGTTCCTTCCTTGCCA 59.150 50.000 0.00 0.00 0.00 4.92
6225 12459 9.699410 AGATAGATGTCATAGAATAGAAGGGAG 57.301 37.037 0.00 0.00 0.00 4.30
6311 12545 3.958147 TGAGAGTTATTCGTGGCATAGGA 59.042 43.478 0.00 0.00 0.00 2.94
6315 12549 3.709653 AGTTATTCGTGGCATAGGAGGAA 59.290 43.478 0.00 0.00 0.00 3.36
6400 12634 5.470098 GTCTAGTTGGCAGTTTCTGAAATGA 59.530 40.000 6.06 0.00 32.82 2.57
6465 12709 6.663944 AAGTATTAATCGACAAGCCTGTTC 57.336 37.500 0.00 0.00 35.30 3.18
6471 12715 3.953712 TCGACAAGCCTGTTCTTATCA 57.046 42.857 0.00 0.00 35.30 2.15
6476 12720 4.184629 ACAAGCCTGTTCTTATCATCGAC 58.815 43.478 0.00 0.00 28.57 4.20
6513 12757 2.489938 TCAATGTAGGTTCCTGTGGC 57.510 50.000 1.12 0.00 0.00 5.01
6753 12997 2.310327 TAGGCACGCAGGGCTATGTG 62.310 60.000 4.06 2.91 44.09 3.21
6898 13146 6.435430 TTTGATACTGACATGTGCAATACC 57.565 37.500 1.15 0.00 0.00 2.73
7010 13258 7.665559 ACAACCAAATCAGATGTGTACAGTTAT 59.334 33.333 0.00 0.00 0.00 1.89
7152 13400 6.065374 TGAGTTTCTAATTGTTGTGGCCTTA 58.935 36.000 3.32 0.00 0.00 2.69
7187 13435 7.966246 TGTTTCTGCAATTTTGAAGCATAAT 57.034 28.000 0.00 0.00 37.68 1.28
7288 14872 8.618677 ACATGCACTCTGATTATGTAATTTCAG 58.381 33.333 0.00 0.00 36.96 3.02
7301 14885 3.620929 AATTTCAGCTGCGCTATGATG 57.379 42.857 9.47 8.26 36.40 3.07
7304 14888 2.028420 TCAGCTGCGCTATGATGTTT 57.972 45.000 9.47 0.00 36.40 2.83
7332 14916 4.211374 GCTTGTTAGTCACGACATCACTTT 59.789 41.667 0.00 0.00 0.00 2.66
7490 15075 4.307432 TCACTGATCGAGAAAAGGTTGTC 58.693 43.478 0.00 0.00 0.00 3.18
7701 15286 1.134965 CAAGGCCACTCGACTAGGAAG 60.135 57.143 5.01 0.00 0.00 3.46
7702 15287 1.142097 GGCCACTCGACTAGGAAGC 59.858 63.158 0.00 0.00 0.00 3.86
7960 15564 3.498397 GTGCCGGTAATGATGATGTTAGG 59.502 47.826 1.90 0.00 0.00 2.69
7962 15566 3.498397 GCCGGTAATGATGATGTTAGGTG 59.502 47.826 1.90 0.00 0.00 4.00
7963 15567 4.065088 CCGGTAATGATGATGTTAGGTGG 58.935 47.826 0.00 0.00 0.00 4.61
7964 15568 3.498397 CGGTAATGATGATGTTAGGTGGC 59.502 47.826 0.00 0.00 0.00 5.01
7965 15569 3.498397 GGTAATGATGATGTTAGGTGGCG 59.502 47.826 0.00 0.00 0.00 5.69
7966 15570 2.260844 ATGATGATGTTAGGTGGCGG 57.739 50.000 0.00 0.00 0.00 6.13
7967 15571 0.180171 TGATGATGTTAGGTGGCGGG 59.820 55.000 0.00 0.00 0.00 6.13
7968 15572 0.468226 GATGATGTTAGGTGGCGGGA 59.532 55.000 0.00 0.00 0.00 5.14
7970 15574 0.251916 TGATGTTAGGTGGCGGGAAG 59.748 55.000 0.00 0.00 0.00 3.46
7971 15575 0.252197 GATGTTAGGTGGCGGGAAGT 59.748 55.000 0.00 0.00 0.00 3.01
7973 15577 0.035739 TGTTAGGTGGCGGGAAGTTC 59.964 55.000 0.00 0.00 0.00 3.01
7974 15578 0.035739 GTTAGGTGGCGGGAAGTTCA 59.964 55.000 5.01 0.00 0.00 3.18
7975 15579 0.988832 TTAGGTGGCGGGAAGTTCAT 59.011 50.000 5.01 0.00 0.00 2.57
7976 15580 0.539986 TAGGTGGCGGGAAGTTCATC 59.460 55.000 5.01 0.00 0.00 2.92
7977 15581 1.002624 GGTGGCGGGAAGTTCATCA 60.003 57.895 5.01 0.00 0.00 3.07
8334 16010 1.292223 CCCACGAGCGAGGAAAGAA 59.708 57.895 7.93 0.00 0.00 2.52
8335 16011 0.320421 CCCACGAGCGAGGAAAGAAA 60.320 55.000 7.93 0.00 0.00 2.52
8338 16014 2.484264 CCACGAGCGAGGAAAGAAAAAT 59.516 45.455 0.00 0.00 0.00 1.82
8340 16016 4.435651 CCACGAGCGAGGAAAGAAAAATAC 60.436 45.833 0.00 0.00 0.00 1.89
8341 16017 4.389077 CACGAGCGAGGAAAGAAAAATACT 59.611 41.667 0.00 0.00 0.00 2.12
8342 16018 4.626172 ACGAGCGAGGAAAGAAAAATACTC 59.374 41.667 0.00 0.00 0.00 2.59
8343 16019 4.625742 CGAGCGAGGAAAGAAAAATACTCA 59.374 41.667 0.00 0.00 0.00 3.41
8398 16074 4.527583 GCTGCTCGCCCCTCTCTG 62.528 72.222 0.00 0.00 0.00 3.35
8492 16168 4.481112 GGCCGGTTTGCAGCATCG 62.481 66.667 1.90 0.85 0.00 3.84
8539 16215 3.419759 GTTTGCGCCATCGTCGGT 61.420 61.111 4.18 0.00 38.14 4.69
8550 16226 2.601266 CCATCGTCGGTTTGTGTGTTTC 60.601 50.000 0.00 0.00 0.00 2.78
8559 16235 4.279659 GGTTTGTGTGTTTCAGATTCGTC 58.720 43.478 0.00 0.00 0.00 4.20
8565 16241 5.515270 TGTGTGTTTCAGATTCGTCGATATC 59.485 40.000 0.00 2.76 0.00 1.63
8586 16262 0.967380 CTTCCAACATCAGTGGCCCC 60.967 60.000 0.00 0.00 0.00 5.80
8600 16276 2.824041 CCCCGGTTTCCAGCATCG 60.824 66.667 0.00 0.00 0.00 3.84
8635 16311 3.370527 CCAACATCGATGACCTAGGGTTT 60.371 47.826 31.33 9.21 35.25 3.27
8636 16312 4.261801 CAACATCGATGACCTAGGGTTTT 58.738 43.478 31.33 8.47 35.25 2.43
8637 16313 4.138487 ACATCGATGACCTAGGGTTTTC 57.862 45.455 31.33 1.55 35.25 2.29
8638 16314 2.953466 TCGATGACCTAGGGTTTTCG 57.047 50.000 14.81 15.20 39.78 3.46
8639 16315 1.479323 TCGATGACCTAGGGTTTTCGG 59.521 52.381 14.81 0.00 39.29 4.30
8640 16316 1.472728 CGATGACCTAGGGTTTTCGGG 60.473 57.143 14.81 0.00 37.01 5.14
8649 16325 0.968393 GGGTTTTCGGGGCATTGCTA 60.968 55.000 8.82 0.00 0.00 3.49
8656 16332 0.180406 CGGGGCATTGCTAACCTAGT 59.820 55.000 8.82 0.00 0.00 2.57
8660 16336 3.089284 GGGCATTGCTAACCTAGTGTTT 58.911 45.455 8.82 0.00 38.42 2.83
8661 16337 3.509967 GGGCATTGCTAACCTAGTGTTTT 59.490 43.478 8.82 0.00 38.42 2.43
8662 16338 4.021456 GGGCATTGCTAACCTAGTGTTTTT 60.021 41.667 8.82 0.00 38.42 1.94
8690 16366 3.950611 GGGACCTAGGGTTCTAGCT 57.049 57.895 14.81 0.00 41.18 3.32
8691 16367 2.177811 GGGACCTAGGGTTCTAGCTT 57.822 55.000 14.81 0.00 41.18 3.74
8692 16368 2.040939 GGGACCTAGGGTTCTAGCTTC 58.959 57.143 14.81 0.00 41.18 3.86
8693 16369 2.359461 GGGACCTAGGGTTCTAGCTTCT 60.359 54.545 14.81 0.00 41.18 2.85
8694 16370 3.117208 GGGACCTAGGGTTCTAGCTTCTA 60.117 52.174 14.81 0.00 41.18 2.10
8695 16371 4.146564 GGACCTAGGGTTCTAGCTTCTAG 58.853 52.174 14.81 0.00 41.18 2.43
8696 16372 4.386648 GGACCTAGGGTTCTAGCTTCTAGT 60.387 50.000 14.81 0.00 41.18 2.57
8697 16373 5.163109 GGACCTAGGGTTCTAGCTTCTAGTA 60.163 48.000 14.81 0.00 41.18 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 94 1.219393 GAAGAAGGAGGAGTGGGCG 59.781 63.158 0.00 0.00 0.00 6.13
246 262 6.928979 TTTAAGAAACAATGTTCGACCAGA 57.071 33.333 0.00 0.00 32.50 3.86
439 474 1.273048 TGGCGCAAGAATCAAAGCAAT 59.727 42.857 10.83 0.00 43.02 3.56
625 663 8.978874 TCTTGCATCATACCACTTTTACATAT 57.021 30.769 0.00 0.00 0.00 1.78
744 783 8.319143 TCCTTACCTTTGCGCTATATTTATTC 57.681 34.615 9.73 0.00 0.00 1.75
1212 5231 2.896443 CTCTCCTTCCCCTGCGTC 59.104 66.667 0.00 0.00 0.00 5.19
1507 5526 3.994392 ACTCGAAATGCACAATTCGTACT 59.006 39.130 22.59 9.81 46.28 2.73
1539 5558 5.047802 ACTGAAGAACCAGCATTTACCATTG 60.048 40.000 0.00 0.00 37.68 2.82
1625 5645 2.046285 CACAGCGACCCCATTTCCC 61.046 63.158 0.00 0.00 0.00 3.97
1662 5682 8.746922 TGATTCATAAATGTCTTTCACAAAGC 57.253 30.769 0.00 0.00 38.97 3.51
1789 5809 7.121168 TCTGATTTGAAGCCAATACAACTAAGG 59.879 37.037 0.00 0.00 31.46 2.69
1858 5878 2.370189 ACTACAAGCAGTCAAGCCTTCT 59.630 45.455 0.00 0.00 34.23 2.85
2241 6277 2.433868 TACTCTGGTGTTTCAGCGTC 57.566 50.000 0.00 0.00 34.88 5.19
2244 6280 2.290323 ACCCATACTCTGGTGTTTCAGC 60.290 50.000 0.00 0.00 44.30 4.26
2245 6281 3.261897 AGACCCATACTCTGGTGTTTCAG 59.738 47.826 0.00 0.00 44.30 3.02
2472 6508 6.828785 AGGAAGGCGAAATTGTTATGTCTAAT 59.171 34.615 0.00 0.00 0.00 1.73
2473 6509 6.093495 CAGGAAGGCGAAATTGTTATGTCTAA 59.907 38.462 0.00 0.00 0.00 2.10
2474 6510 5.584649 CAGGAAGGCGAAATTGTTATGTCTA 59.415 40.000 0.00 0.00 0.00 2.59
2475 6511 4.396166 CAGGAAGGCGAAATTGTTATGTCT 59.604 41.667 0.00 0.00 0.00 3.41
2478 6514 4.701956 ACAGGAAGGCGAAATTGTTATG 57.298 40.909 0.00 0.00 0.00 1.90
2479 6515 5.741011 TCTACAGGAAGGCGAAATTGTTAT 58.259 37.500 0.00 0.00 0.00 1.89
2481 6517 4.015872 TCTACAGGAAGGCGAAATTGTT 57.984 40.909 0.00 0.00 0.00 2.83
2482 6518 3.695830 TCTACAGGAAGGCGAAATTGT 57.304 42.857 0.00 0.00 0.00 2.71
2483 6519 4.606457 CTTCTACAGGAAGGCGAAATTG 57.394 45.455 0.00 0.00 45.55 2.32
2724 6761 4.398358 GGACCAAGGTTGTAAAGGAATAGC 59.602 45.833 0.00 0.00 0.00 2.97
2787 6824 2.039084 GGATGAGTTGTCCAGGTTGTCT 59.961 50.000 0.00 0.00 35.76 3.41
2851 6888 1.312815 GCCTGAATAGCAAGGCGAAT 58.687 50.000 0.00 0.00 37.71 3.34
2852 6889 2.780595 GCCTGAATAGCAAGGCGAA 58.219 52.632 0.00 0.00 37.71 4.70
2910 6947 3.129502 CCAGTGGACTGCGGCATG 61.130 66.667 1.68 0.00 42.47 4.06
2947 6984 0.545171 AGATGCCATGTGGAGGACAG 59.455 55.000 2.55 0.00 38.23 3.51
2951 6988 0.545171 ACTCAGATGCCATGTGGAGG 59.455 55.000 2.55 0.00 37.39 4.30
2976 7013 0.530744 TCCCGACTCAGATGGTTTCG 59.469 55.000 0.00 0.00 0.00 3.46
2984 7021 2.045242 CCTCGGTCCCGACTCAGA 60.045 66.667 3.90 0.00 44.01 3.27
3006 7043 2.271800 ACGATGAAATCTGCGAACTCC 58.728 47.619 0.00 0.00 42.58 3.85
3128 7166 4.696479 AGGAGTATTGCCATAACCTCTG 57.304 45.455 0.00 0.00 0.00 3.35
3188 7226 2.009774 CAAAGGCTCGGTGGAGTATTG 58.990 52.381 0.00 0.00 42.53 1.90
3191 7229 0.320374 CACAAAGGCTCGGTGGAGTA 59.680 55.000 9.86 0.00 42.53 2.59
3192 7230 1.071471 CACAAAGGCTCGGTGGAGT 59.929 57.895 9.86 0.00 42.53 3.85
3272 7362 4.991776 TCAACCATGATAGACCAACCAAA 58.008 39.130 0.00 0.00 0.00 3.28
3300 7390 2.307496 AGGTCATGCCACCAATTTCA 57.693 45.000 6.37 0.00 39.16 2.69
3385 7481 1.154430 TTCCTAGCCCCTTGTTTGGT 58.846 50.000 0.00 0.00 0.00 3.67
3420 7520 3.293337 GGGGGTAATAAACGCTTCCATT 58.707 45.455 0.00 0.00 40.76 3.16
3521 7626 9.973661 TTATTATCTGGATCTTTTGGTCTCAAA 57.026 29.630 0.00 0.00 40.71 2.69
3522 7627 9.396022 GTTATTATCTGGATCTTTTGGTCTCAA 57.604 33.333 0.00 0.00 0.00 3.02
3523 7628 8.772250 AGTTATTATCTGGATCTTTTGGTCTCA 58.228 33.333 0.00 0.00 0.00 3.27
3552 7657 8.928270 TTAGTTTATAGAGTAGTCTTGCTTGC 57.072 34.615 5.16 0.00 33.84 4.01
3593 7698 1.006832 GTCCCGATTTGGATGACGTG 58.993 55.000 0.00 0.00 42.00 4.49
3657 7762 2.483714 GGAGCAGTGCAAGGATTCGATA 60.484 50.000 19.20 0.00 0.00 2.92
3661 7766 1.831580 AAGGAGCAGTGCAAGGATTC 58.168 50.000 19.20 4.45 0.00 2.52
3752 7859 5.068855 TGCAGGAATGATGTTCTTTTTGACA 59.931 36.000 0.00 0.00 0.00 3.58
4131 8314 1.602377 GTGCTGTGTAGTTCGGCTTTT 59.398 47.619 0.00 0.00 37.96 2.27
4133 8316 0.105964 TGTGCTGTGTAGTTCGGCTT 59.894 50.000 0.00 0.00 37.96 4.35
4137 8320 1.930503 TGTGTTGTGCTGTGTAGTTCG 59.069 47.619 0.00 0.00 0.00 3.95
4138 8321 2.936498 AGTGTGTTGTGCTGTGTAGTTC 59.064 45.455 0.00 0.00 0.00 3.01
4142 8325 2.869801 GCTAAGTGTGTTGTGCTGTGTA 59.130 45.455 0.00 0.00 0.00 2.90
4143 8326 1.670811 GCTAAGTGTGTTGTGCTGTGT 59.329 47.619 0.00 0.00 0.00 3.72
4144 8327 1.002468 GGCTAAGTGTGTTGTGCTGTG 60.002 52.381 0.00 0.00 0.00 3.66
4145 8328 1.308998 GGCTAAGTGTGTTGTGCTGT 58.691 50.000 0.00 0.00 0.00 4.40
4146 8329 1.002468 GTGGCTAAGTGTGTTGTGCTG 60.002 52.381 0.00 0.00 0.00 4.41
4147 8330 1.134098 AGTGGCTAAGTGTGTTGTGCT 60.134 47.619 0.00 0.00 0.00 4.40
4148 8331 1.002468 CAGTGGCTAAGTGTGTTGTGC 60.002 52.381 0.00 0.00 0.00 4.57
4149 8332 1.002468 GCAGTGGCTAAGTGTGTTGTG 60.002 52.381 0.00 0.00 36.96 3.33
4150 8333 1.308998 GCAGTGGCTAAGTGTGTTGT 58.691 50.000 0.00 0.00 36.96 3.32
4151 8334 1.002468 GTGCAGTGGCTAAGTGTGTTG 60.002 52.381 0.00 0.00 41.91 3.33
4153 8336 0.180171 TGTGCAGTGGCTAAGTGTGT 59.820 50.000 0.00 0.00 41.91 3.72
4155 8338 2.154462 GATTGTGCAGTGGCTAAGTGT 58.846 47.619 0.00 0.00 41.91 3.55
4156 8339 2.153645 TGATTGTGCAGTGGCTAAGTG 58.846 47.619 0.00 0.00 41.91 3.16
4159 8342 3.485394 TCTTTGATTGTGCAGTGGCTAA 58.515 40.909 0.00 0.00 41.91 3.09
4160 8343 3.138884 TCTTTGATTGTGCAGTGGCTA 57.861 42.857 0.00 0.00 41.91 3.93
4161 8344 1.985473 TCTTTGATTGTGCAGTGGCT 58.015 45.000 0.00 0.00 41.91 4.75
4162 8345 2.798976 TTCTTTGATTGTGCAGTGGC 57.201 45.000 0.00 0.00 41.68 5.01
4163 8346 4.053295 CCTTTTCTTTGATTGTGCAGTGG 58.947 43.478 0.00 0.00 0.00 4.00
4164 8347 4.505191 CACCTTTTCTTTGATTGTGCAGTG 59.495 41.667 0.00 0.00 0.00 3.66
4165 8348 4.160252 ACACCTTTTCTTTGATTGTGCAGT 59.840 37.500 0.00 0.00 0.00 4.40
4166 8349 4.685924 ACACCTTTTCTTTGATTGTGCAG 58.314 39.130 0.00 0.00 0.00 4.41
4167 8350 4.734398 ACACCTTTTCTTTGATTGTGCA 57.266 36.364 0.00 0.00 0.00 4.57
4253 8436 8.531982 TGGCTATACTATTAACCATGCTCTAAG 58.468 37.037 0.00 0.00 0.00 2.18
4254 8437 8.430573 TGGCTATACTATTAACCATGCTCTAA 57.569 34.615 0.00 0.00 0.00 2.10
4255 8438 7.363880 GCTGGCTATACTATTAACCATGCTCTA 60.364 40.741 0.00 0.00 0.00 2.43
4256 8439 6.575254 GCTGGCTATACTATTAACCATGCTCT 60.575 42.308 0.00 0.00 0.00 4.09
4257 8440 5.582665 GCTGGCTATACTATTAACCATGCTC 59.417 44.000 0.00 0.00 0.00 4.26
4258 8441 5.249393 AGCTGGCTATACTATTAACCATGCT 59.751 40.000 0.00 0.00 31.38 3.79
4259 8442 5.352569 CAGCTGGCTATACTATTAACCATGC 59.647 44.000 5.57 0.00 0.00 4.06
4260 8443 6.701340 TCAGCTGGCTATACTATTAACCATG 58.299 40.000 15.13 0.00 0.00 3.66
4261 8444 6.935240 TCAGCTGGCTATACTATTAACCAT 57.065 37.500 15.13 0.00 0.00 3.55
4262 8445 6.295859 CCATCAGCTGGCTATACTATTAACCA 60.296 42.308 15.13 0.00 38.47 3.67
4263 8446 6.109359 CCATCAGCTGGCTATACTATTAACC 58.891 44.000 15.13 0.00 38.47 2.85
4287 8470 1.876156 GACATGGCACTGGCTTATAGC 59.124 52.381 3.97 0.00 41.46 2.97
4288 8471 3.198409 TGACATGGCACTGGCTTATAG 57.802 47.619 0.00 0.00 40.87 1.31
4289 8472 3.392285 AGATGACATGGCACTGGCTTATA 59.608 43.478 1.45 0.00 40.87 0.98
4290 8473 2.174210 AGATGACATGGCACTGGCTTAT 59.826 45.455 1.45 0.00 40.87 1.73
4291 8474 1.561076 AGATGACATGGCACTGGCTTA 59.439 47.619 1.45 0.00 40.87 3.09
4292 8475 0.330604 AGATGACATGGCACTGGCTT 59.669 50.000 1.45 0.00 40.87 4.35
4293 8476 1.134280 GTAGATGACATGGCACTGGCT 60.134 52.381 1.45 1.41 40.87 4.75
4294 8477 1.303309 GTAGATGACATGGCACTGGC 58.697 55.000 1.45 0.00 40.13 4.85
4295 8478 2.558378 CTGTAGATGACATGGCACTGG 58.442 52.381 1.45 0.00 37.45 4.00
4296 8479 1.938577 GCTGTAGATGACATGGCACTG 59.061 52.381 1.45 0.00 37.45 3.66
4297 8480 1.836166 AGCTGTAGATGACATGGCACT 59.164 47.619 1.45 6.11 37.45 4.40
4298 8481 2.208431 GAGCTGTAGATGACATGGCAC 58.792 52.381 1.45 0.00 37.45 5.01
4299 8482 1.832998 TGAGCTGTAGATGACATGGCA 59.167 47.619 2.18 2.18 37.45 4.92
4300 8483 2.609427 TGAGCTGTAGATGACATGGC 57.391 50.000 0.00 0.00 37.45 4.40
4301 8484 4.603989 AGATGAGCTGTAGATGACATGG 57.396 45.455 0.00 0.00 37.45 3.66
4302 8485 7.488792 GCTATAAGATGAGCTGTAGATGACATG 59.511 40.741 0.00 0.00 37.45 3.21
4303 8486 7.363705 GGCTATAAGATGAGCTGTAGATGACAT 60.364 40.741 0.00 0.00 37.45 3.06
4304 8487 6.071672 GGCTATAAGATGAGCTGTAGATGACA 60.072 42.308 0.00 0.00 38.79 3.58
4305 8488 6.071672 TGGCTATAAGATGAGCTGTAGATGAC 60.072 42.308 0.00 0.00 38.79 3.06
4306 8489 6.012745 TGGCTATAAGATGAGCTGTAGATGA 58.987 40.000 0.00 0.00 38.79 2.92
4307 8490 6.278172 TGGCTATAAGATGAGCTGTAGATG 57.722 41.667 0.00 0.00 38.79 2.90
4308 8491 6.268617 TGTTGGCTATAAGATGAGCTGTAGAT 59.731 38.462 0.00 0.00 38.79 1.98
4309 8492 5.598417 TGTTGGCTATAAGATGAGCTGTAGA 59.402 40.000 0.00 0.00 38.79 2.59
4310 8493 5.847304 TGTTGGCTATAAGATGAGCTGTAG 58.153 41.667 0.00 0.00 38.79 2.74
4311 8494 5.869649 TGTTGGCTATAAGATGAGCTGTA 57.130 39.130 0.00 0.00 38.79 2.74
4312 8495 4.760530 TGTTGGCTATAAGATGAGCTGT 57.239 40.909 0.00 0.00 38.79 4.40
4313 8496 5.061853 ACATGTTGGCTATAAGATGAGCTG 58.938 41.667 0.00 0.00 38.79 4.24
4314 8497 5.301835 ACATGTTGGCTATAAGATGAGCT 57.698 39.130 0.00 0.00 38.79 4.09
4315 8498 5.991606 TGTACATGTTGGCTATAAGATGAGC 59.008 40.000 2.30 0.00 35.54 4.26
4316 8499 8.613060 ATTGTACATGTTGGCTATAAGATGAG 57.387 34.615 2.30 0.00 35.54 2.90
4317 8500 9.710900 CTATTGTACATGTTGGCTATAAGATGA 57.289 33.333 2.30 0.00 35.54 2.92
4318 8501 9.494271 ACTATTGTACATGTTGGCTATAAGATG 57.506 33.333 2.30 0.00 37.35 2.90
4324 8507 8.870116 TGATCTACTATTGTACATGTTGGCTAT 58.130 33.333 2.30 0.64 0.00 2.97
4325 8508 8.245195 TGATCTACTATTGTACATGTTGGCTA 57.755 34.615 2.30 0.00 0.00 3.93
4326 8509 7.124573 TGATCTACTATTGTACATGTTGGCT 57.875 36.000 2.30 0.00 0.00 4.75
4327 8510 7.786178 TTGATCTACTATTGTACATGTTGGC 57.214 36.000 2.30 0.00 0.00 4.52
4366 8549 7.487822 TGAAAGATGGGCCACATAATAAAAA 57.512 32.000 9.28 0.00 40.72 1.94
4367 8550 7.673641 ATGAAAGATGGGCCACATAATAAAA 57.326 32.000 9.28 0.00 40.72 1.52
4368 8551 7.564660 AGAATGAAAGATGGGCCACATAATAAA 59.435 33.333 9.28 0.00 40.72 1.40
4369 8552 7.068702 AGAATGAAAGATGGGCCACATAATAA 58.931 34.615 9.28 0.00 40.72 1.40
4370 8553 6.613699 AGAATGAAAGATGGGCCACATAATA 58.386 36.000 9.28 0.00 40.72 0.98
4371 8554 5.461327 AGAATGAAAGATGGGCCACATAAT 58.539 37.500 9.28 0.00 40.72 1.28
4372 8555 4.870636 AGAATGAAAGATGGGCCACATAA 58.129 39.130 9.28 0.00 40.72 1.90
4373 8556 4.079844 TGAGAATGAAAGATGGGCCACATA 60.080 41.667 9.28 0.00 40.72 2.29
4374 8557 3.294214 GAGAATGAAAGATGGGCCACAT 58.706 45.455 9.28 4.20 44.18 3.21
4375 8558 2.041485 TGAGAATGAAAGATGGGCCACA 59.959 45.455 9.28 1.19 0.00 4.17
4376 8559 2.424956 GTGAGAATGAAAGATGGGCCAC 59.575 50.000 9.28 2.67 0.00 5.01
4377 8560 2.041485 TGTGAGAATGAAAGATGGGCCA 59.959 45.455 9.61 9.61 0.00 5.36
4378 8561 2.726821 TGTGAGAATGAAAGATGGGCC 58.273 47.619 0.00 0.00 0.00 5.80
4379 8562 4.219288 ACTTTGTGAGAATGAAAGATGGGC 59.781 41.667 0.00 0.00 0.00 5.36
4380 8563 5.706916 CACTTTGTGAGAATGAAAGATGGG 58.293 41.667 0.00 0.00 35.23 4.00
4381 8564 5.159209 GCACTTTGTGAGAATGAAAGATGG 58.841 41.667 1.52 0.00 35.23 3.51
4382 8565 5.048224 AGGCACTTTGTGAGAATGAAAGATG 60.048 40.000 1.52 0.00 35.23 2.90
4383 8566 5.075493 AGGCACTTTGTGAGAATGAAAGAT 58.925 37.500 1.52 0.00 35.23 2.40
4384 8567 4.464008 AGGCACTTTGTGAGAATGAAAGA 58.536 39.130 1.52 0.00 35.23 2.52
4385 8568 4.843220 AGGCACTTTGTGAGAATGAAAG 57.157 40.909 1.52 0.00 35.23 2.62
4386 8569 4.761739 CCTAGGCACTTTGTGAGAATGAAA 59.238 41.667 0.00 0.00 41.75 2.69
4387 8570 4.041567 TCCTAGGCACTTTGTGAGAATGAA 59.958 41.667 2.96 0.00 41.75 2.57
4388 8571 3.582647 TCCTAGGCACTTTGTGAGAATGA 59.417 43.478 2.96 0.00 41.75 2.57
4389 8572 3.937706 CTCCTAGGCACTTTGTGAGAATG 59.062 47.826 2.96 0.00 41.75 2.67
4390 8573 3.620966 GCTCCTAGGCACTTTGTGAGAAT 60.621 47.826 2.96 0.00 41.75 2.40
4391 8574 2.289694 GCTCCTAGGCACTTTGTGAGAA 60.290 50.000 2.96 0.00 41.75 2.87
4392 8575 1.276421 GCTCCTAGGCACTTTGTGAGA 59.724 52.381 2.96 0.00 41.75 3.27
4393 8576 1.002430 TGCTCCTAGGCACTTTGTGAG 59.998 52.381 2.96 0.00 41.75 3.51
4394 8577 1.055849 TGCTCCTAGGCACTTTGTGA 58.944 50.000 2.96 0.00 41.75 3.58
4395 8578 3.631453 TGCTCCTAGGCACTTTGTG 57.369 52.632 2.96 0.00 41.75 3.33
4410 8593 3.510920 GAGCCAGCTCTAGCATGTGCT 62.511 57.143 12.42 12.66 45.16 4.40
4411 8594 1.153208 AGCCAGCTCTAGCATGTGC 60.153 57.895 4.54 0.00 45.16 4.57
4412 8595 2.989196 GAGCCAGCTCTAGCATGTG 58.011 57.895 12.42 0.00 45.16 3.21
4421 8604 0.244994 TCTTCGTGAAGAGCCAGCTC 59.755 55.000 11.78 11.78 42.06 4.09
4422 8605 2.355946 TCTTCGTGAAGAGCCAGCT 58.644 52.632 8.19 0.00 42.06 4.24
4423 8606 4.996976 TCTTCGTGAAGAGCCAGC 57.003 55.556 8.19 0.00 42.06 4.85
4429 8612 1.816863 AAGCGGGCTCTTCGTGAAGA 61.817 55.000 11.54 11.54 44.47 2.87
4430 8613 0.108804 TAAGCGGGCTCTTCGTGAAG 60.109 55.000 3.17 3.17 39.71 3.02
4431 8614 0.389426 GTAAGCGGGCTCTTCGTGAA 60.389 55.000 0.00 0.00 0.00 3.18
4432 8615 1.214589 GTAAGCGGGCTCTTCGTGA 59.785 57.895 0.00 0.00 0.00 4.35
4433 8616 1.810030 GGTAAGCGGGCTCTTCGTG 60.810 63.158 0.00 0.00 0.00 4.35
4434 8617 1.542187 AAGGTAAGCGGGCTCTTCGT 61.542 55.000 0.00 0.00 0.00 3.85
4435 8618 0.806492 GAAGGTAAGCGGGCTCTTCG 60.806 60.000 0.00 0.00 0.00 3.79
4436 8619 0.537653 AGAAGGTAAGCGGGCTCTTC 59.462 55.000 10.83 10.83 35.41 2.87
4437 8620 0.537653 GAGAAGGTAAGCGGGCTCTT 59.462 55.000 0.00 0.00 0.00 2.85
4438 8621 0.324830 AGAGAAGGTAAGCGGGCTCT 60.325 55.000 0.00 0.00 0.00 4.09
4439 8622 0.103390 GAGAGAAGGTAAGCGGGCTC 59.897 60.000 0.00 0.00 0.00 4.70
4440 8623 0.324830 AGAGAGAAGGTAAGCGGGCT 60.325 55.000 0.00 0.00 0.00 5.19
4441 8624 0.103390 GAGAGAGAAGGTAAGCGGGC 59.897 60.000 0.00 0.00 0.00 6.13
4442 8625 0.747852 GGAGAGAGAAGGTAAGCGGG 59.252 60.000 0.00 0.00 0.00 6.13
4443 8626 1.679153 GAGGAGAGAGAAGGTAAGCGG 59.321 57.143 0.00 0.00 0.00 5.52
4444 8627 2.650322 AGAGGAGAGAGAAGGTAAGCG 58.350 52.381 0.00 0.00 0.00 4.68
4445 8628 4.278310 AGAAGAGGAGAGAGAAGGTAAGC 58.722 47.826 0.00 0.00 0.00 3.09
4446 8629 5.755849 AGAGAAGAGGAGAGAGAAGGTAAG 58.244 45.833 0.00 0.00 0.00 2.34
4447 8630 5.789574 AGAGAAGAGGAGAGAGAAGGTAA 57.210 43.478 0.00 0.00 0.00 2.85
4448 8631 5.789574 AAGAGAAGAGGAGAGAGAAGGTA 57.210 43.478 0.00 0.00 0.00 3.08
4449 8632 4.675063 AAGAGAAGAGGAGAGAGAAGGT 57.325 45.455 0.00 0.00 0.00 3.50
4450 8633 4.402474 GGAAAGAGAAGAGGAGAGAGAAGG 59.598 50.000 0.00 0.00 0.00 3.46
4451 8634 5.264395 AGGAAAGAGAAGAGGAGAGAGAAG 58.736 45.833 0.00 0.00 0.00 2.85
4452 8635 5.261216 GAGGAAAGAGAAGAGGAGAGAGAA 58.739 45.833 0.00 0.00 0.00 2.87
4453 8636 4.325030 GGAGGAAAGAGAAGAGGAGAGAGA 60.325 50.000 0.00 0.00 0.00 3.10
4454 8637 3.954258 GGAGGAAAGAGAAGAGGAGAGAG 59.046 52.174 0.00 0.00 0.00 3.20
4455 8638 3.335183 TGGAGGAAAGAGAAGAGGAGAGA 59.665 47.826 0.00 0.00 0.00 3.10
4456 8639 3.707316 TGGAGGAAAGAGAAGAGGAGAG 58.293 50.000 0.00 0.00 0.00 3.20
4457 8640 3.835395 GTTGGAGGAAAGAGAAGAGGAGA 59.165 47.826 0.00 0.00 0.00 3.71
4458 8641 3.837731 AGTTGGAGGAAAGAGAAGAGGAG 59.162 47.826 0.00 0.00 0.00 3.69
4459 8642 3.863086 AGTTGGAGGAAAGAGAAGAGGA 58.137 45.455 0.00 0.00 0.00 3.71
4460 8643 5.729510 CTTAGTTGGAGGAAAGAGAAGAGG 58.270 45.833 0.00 0.00 0.00 3.69
4461 8644 5.175127 GCTTAGTTGGAGGAAAGAGAAGAG 58.825 45.833 0.00 0.00 0.00 2.85
4462 8645 4.593206 TGCTTAGTTGGAGGAAAGAGAAGA 59.407 41.667 0.00 0.00 0.00 2.87
4463 8646 4.899502 TGCTTAGTTGGAGGAAAGAGAAG 58.100 43.478 0.00 0.00 0.00 2.85
4464 8647 4.593206 TCTGCTTAGTTGGAGGAAAGAGAA 59.407 41.667 0.00 0.00 0.00 2.87
4465 8648 4.160329 TCTGCTTAGTTGGAGGAAAGAGA 58.840 43.478 0.00 0.00 0.00 3.10
4466 8649 4.543590 TCTGCTTAGTTGGAGGAAAGAG 57.456 45.455 0.00 0.00 0.00 2.85
4467 8650 4.974645 TTCTGCTTAGTTGGAGGAAAGA 57.025 40.909 0.00 0.00 0.00 2.52
4468 8651 7.872113 ATATTTCTGCTTAGTTGGAGGAAAG 57.128 36.000 0.00 0.00 0.00 2.62
4469 8652 8.548877 AGTATATTTCTGCTTAGTTGGAGGAAA 58.451 33.333 0.00 0.00 0.00 3.13
4470 8653 8.090788 AGTATATTTCTGCTTAGTTGGAGGAA 57.909 34.615 0.00 0.00 0.00 3.36
4471 8654 7.676683 AGTATATTTCTGCTTAGTTGGAGGA 57.323 36.000 0.00 0.00 0.00 3.71
4472 8655 8.643324 ACTAGTATATTTCTGCTTAGTTGGAGG 58.357 37.037 0.00 0.00 0.00 4.30
4490 8673 8.689972 GCGGGCTATAAGGAATAAACTAGTATA 58.310 37.037 0.00 0.00 0.00 1.47
4491 8674 7.399478 AGCGGGCTATAAGGAATAAACTAGTAT 59.601 37.037 0.00 0.00 0.00 2.12
4492 8675 6.723052 AGCGGGCTATAAGGAATAAACTAGTA 59.277 38.462 0.00 0.00 0.00 1.82
4493 8676 5.543020 AGCGGGCTATAAGGAATAAACTAGT 59.457 40.000 0.00 0.00 0.00 2.57
4494 8677 5.869888 CAGCGGGCTATAAGGAATAAACTAG 59.130 44.000 0.00 0.00 0.00 2.57
4495 8678 5.541101 TCAGCGGGCTATAAGGAATAAACTA 59.459 40.000 0.00 0.00 0.00 2.24
4496 8679 4.347000 TCAGCGGGCTATAAGGAATAAACT 59.653 41.667 0.00 0.00 0.00 2.66
4497 8680 4.451435 GTCAGCGGGCTATAAGGAATAAAC 59.549 45.833 0.00 0.00 0.00 2.01
4498 8681 4.347000 AGTCAGCGGGCTATAAGGAATAAA 59.653 41.667 0.00 0.00 0.00 1.40
4499 8682 3.901844 AGTCAGCGGGCTATAAGGAATAA 59.098 43.478 0.00 0.00 0.00 1.40
4500 8683 3.507411 AGTCAGCGGGCTATAAGGAATA 58.493 45.455 0.00 0.00 0.00 1.75
4501 8684 2.300437 GAGTCAGCGGGCTATAAGGAAT 59.700 50.000 0.00 0.00 0.00 3.01
4502 8685 1.687123 GAGTCAGCGGGCTATAAGGAA 59.313 52.381 0.00 0.00 0.00 3.36
4503 8686 1.329256 GAGTCAGCGGGCTATAAGGA 58.671 55.000 0.00 0.00 0.00 3.36
4504 8687 1.000283 CTGAGTCAGCGGGCTATAAGG 60.000 57.143 7.33 0.00 0.00 2.69
4505 8688 2.430546 CTGAGTCAGCGGGCTATAAG 57.569 55.000 7.33 0.00 0.00 1.73
4516 8699 6.980593 AGCAAGTATAATAGAGCTGAGTCAG 58.019 40.000 16.21 16.21 34.12 3.51
4517 8700 6.775142 AGAGCAAGTATAATAGAGCTGAGTCA 59.225 38.462 0.00 0.00 31.61 3.41
4518 8701 7.214467 AGAGCAAGTATAATAGAGCTGAGTC 57.786 40.000 0.00 0.00 31.61 3.36
4519 8702 7.595819 AAGAGCAAGTATAATAGAGCTGAGT 57.404 36.000 0.00 0.00 31.61 3.41
4520 8703 8.792633 ACTAAGAGCAAGTATAATAGAGCTGAG 58.207 37.037 0.00 0.00 31.61 3.35
4521 8704 8.698973 ACTAAGAGCAAGTATAATAGAGCTGA 57.301 34.615 0.00 0.00 31.61 4.26
4524 8707 9.849166 CCTTACTAAGAGCAAGTATAATAGAGC 57.151 37.037 0.00 0.00 29.86 4.09
4530 8713 8.834465 CGTAGTCCTTACTAAGAGCAAGTATAA 58.166 37.037 0.00 0.00 39.90 0.98
4531 8714 7.041508 GCGTAGTCCTTACTAAGAGCAAGTATA 60.042 40.741 0.00 0.00 39.90 1.47
4532 8715 6.238703 GCGTAGTCCTTACTAAGAGCAAGTAT 60.239 42.308 0.00 0.00 39.90 2.12
4533 8716 5.065731 GCGTAGTCCTTACTAAGAGCAAGTA 59.934 44.000 0.00 0.00 39.90 2.24
4534 8717 4.142425 GCGTAGTCCTTACTAAGAGCAAGT 60.142 45.833 0.00 0.00 39.90 3.16
4535 8718 4.096682 AGCGTAGTCCTTACTAAGAGCAAG 59.903 45.833 0.00 0.00 39.90 4.01
4536 8719 4.015084 AGCGTAGTCCTTACTAAGAGCAA 58.985 43.478 0.00 0.00 39.90 3.91
4537 8720 3.618351 AGCGTAGTCCTTACTAAGAGCA 58.382 45.455 0.00 0.00 39.90 4.26
4538 8721 3.303263 CGAGCGTAGTCCTTACTAAGAGC 60.303 52.174 0.00 2.87 39.90 4.09
4539 8722 3.870419 ACGAGCGTAGTCCTTACTAAGAG 59.130 47.826 0.00 0.00 39.90 2.85
4540 8723 3.620374 CACGAGCGTAGTCCTTACTAAGA 59.380 47.826 0.00 0.00 39.90 2.10
4629 8900 6.347240 GCTTTAATGGATAAGCGAGTCAGATG 60.347 42.308 0.00 0.00 37.60 2.90
4658 8929 3.563808 TGTTTTCTGTGCACTCCATGTAC 59.436 43.478 19.41 8.06 43.75 2.90
4701 8972 3.815401 CAGGGACAAGACTTGTTTAGGTG 59.185 47.826 21.42 11.24 45.52 4.00
4785 9056 4.819088 TGGTTGATTTTCGACATTCACTCA 59.181 37.500 0.00 0.00 32.35 3.41
4786 9057 5.356882 TGGTTGATTTTCGACATTCACTC 57.643 39.130 0.00 0.00 32.35 3.51
4791 9062 8.576442 AGAATACTTTGGTTGATTTTCGACATT 58.424 29.630 0.00 0.00 32.35 2.71
4819 9090 0.319297 GTAGACGCTGTGTTCGGGTT 60.319 55.000 0.00 0.00 0.00 4.11
4824 9095 1.007336 CCACCGTAGACGCTGTGTTC 61.007 60.000 9.54 0.00 38.18 3.18
4825 9096 1.006571 CCACCGTAGACGCTGTGTT 60.007 57.895 9.54 0.00 38.18 3.32
4827 9098 2.809601 GCCACCGTAGACGCTGTG 60.810 66.667 0.00 0.79 38.18 3.66
4839 9111 0.468226 TCCGTCATAAGGATGCCACC 59.532 55.000 0.00 0.00 32.62 4.61
4928 9200 0.548682 AGAGAATGGGGAGCCAGTGT 60.549 55.000 0.00 0.00 0.00 3.55
4932 9204 0.343372 AGGTAGAGAATGGGGAGCCA 59.657 55.000 0.00 0.00 0.00 4.75
4935 9207 4.404715 TCGTTTAAGGTAGAGAATGGGGAG 59.595 45.833 0.00 0.00 0.00 4.30
4987 9259 8.311395 TCACACTTATGGAAGAGACTAATGAT 57.689 34.615 0.00 0.00 36.45 2.45
4995 9267 3.444034 CGGACTCACACTTATGGAAGAGA 59.556 47.826 0.00 0.00 36.45 3.10
5004 9276 1.045407 AGCCAACGGACTCACACTTA 58.955 50.000 0.00 0.00 0.00 2.24
5282 9555 9.051259 AGCATGTATGTTGGGAACTAGATATAT 57.949 33.333 0.00 0.00 0.00 0.86
5433 9706 0.317479 ACAGAAGGCGTGACACTACC 59.683 55.000 3.68 5.25 0.00 3.18
5594 9868 6.039616 GGTAAGCATGTTTTCTTTCACAACA 58.960 36.000 0.00 0.00 34.97 3.33
5595 9869 5.173131 CGGTAAGCATGTTTTCTTTCACAAC 59.827 40.000 0.00 0.00 0.00 3.32
5687 9964 2.878406 TCTTGAAGAAAGAAGTTGGCCG 59.122 45.455 0.00 0.00 42.09 6.13
5732 10009 6.683974 TTCCTGATTAAAGATGCAAGCTAC 57.316 37.500 0.00 0.00 0.00 3.58
5826 12057 1.355381 ACAGAATGGCATCAGTCCCAA 59.645 47.619 0.00 0.00 43.62 4.12
5941 12175 7.639850 CACGCCATATGTAGAAACTTACAAATG 59.360 37.037 1.24 0.00 37.13 2.32
5957 12191 5.989168 TCCTAAGTTGATAACACGCCATATG 59.011 40.000 0.00 0.00 0.00 1.78
6018 12252 3.818773 GTGTGTGCCTGGTAGTACATTTT 59.181 43.478 2.06 0.00 0.00 1.82
6033 12267 1.283793 GGTGCATCTGTGTGTGTGC 59.716 57.895 0.00 0.00 38.05 4.57
6034 12268 0.589708 CTGGTGCATCTGTGTGTGTG 59.410 55.000 0.00 0.00 0.00 3.82
6096 12330 7.882755 TGGAGGGAAGAAAATATAAATCTGGT 58.117 34.615 0.00 0.00 0.00 4.00
6222 12456 5.473039 CACCAGTTTTCATTTCATTCCTCC 58.527 41.667 0.00 0.00 0.00 4.30
6225 12459 3.996363 GCCACCAGTTTTCATTTCATTCC 59.004 43.478 0.00 0.00 0.00 3.01
6270 12504 3.881688 CTCAAGCTCCTGATTACCAATGG 59.118 47.826 0.00 0.00 0.00 3.16
6311 12545 7.175293 AGAGCGTACGATATAGAGAAAATTCCT 59.825 37.037 21.65 0.00 0.00 3.36
6315 12549 6.583050 GCAAGAGCGTACGATATAGAGAAAAT 59.417 38.462 21.65 0.00 0.00 1.82
6465 12709 7.848051 GCTTTAACATTGTCAGTCGATGATAAG 59.152 37.037 2.19 4.04 41.64 1.73
6471 12715 7.041721 TGATAGCTTTAACATTGTCAGTCGAT 58.958 34.615 0.00 0.00 0.00 3.59
6476 12720 9.926751 CTACATTGATAGCTTTAACATTGTCAG 57.073 33.333 0.00 0.00 32.13 3.51
6513 12757 2.159338 CCAGTCCAATTTTGAGATGCCG 60.159 50.000 0.00 0.00 0.00 5.69
6696 12940 2.103373 TGACCACCAGCTCTATCAGAC 58.897 52.381 0.00 0.00 0.00 3.51
6753 12997 4.278919 GGTATCTAGTCTTACTCTGGTGCC 59.721 50.000 0.00 0.00 0.00 5.01
6896 13144 4.034394 GGTCGAGTAAAACACGAAAAAGGT 59.966 41.667 1.27 0.00 42.32 3.50
6898 13146 4.026640 TCGGTCGAGTAAAACACGAAAAAG 60.027 41.667 1.27 0.00 42.32 2.27
7010 13258 0.482446 ATTCCAGAAGCACAACCCCA 59.518 50.000 0.00 0.00 0.00 4.96
7104 13352 9.142515 TCAATTTTTCAGCTAATGTTATGCTTG 57.857 29.630 0.00 0.00 34.51 4.01
7136 13384 9.566432 AAATTGAAATTAAGGCCACAACAATTA 57.434 25.926 5.01 0.00 35.42 1.40
7137 13385 8.462589 AAATTGAAATTAAGGCCACAACAATT 57.537 26.923 5.01 10.40 37.14 2.32
7247 13495 7.493645 CAGAGTGCATGTACATATTTTCAGAGA 59.506 37.037 16.62 0.00 0.00 3.10
7301 14885 5.050634 TGTCGTGACTAACAAGCACATAAAC 60.051 40.000 1.23 0.00 32.96 2.01
7304 14888 4.245845 TGTCGTGACTAACAAGCACATA 57.754 40.909 1.23 0.00 32.96 2.29
7332 14916 7.876371 AGAGGAAGATGGATCCAAATTAAGAA 58.124 34.615 20.67 0.00 39.55 2.52
7960 15564 0.605319 TGTGATGAACTTCCCGCCAC 60.605 55.000 0.00 0.00 0.00 5.01
7962 15566 0.321653 ACTGTGATGAACTTCCCGCC 60.322 55.000 0.00 0.00 0.00 6.13
7963 15567 0.798776 CACTGTGATGAACTTCCCGC 59.201 55.000 0.32 0.00 0.00 6.13
7964 15568 2.169832 ACACTGTGATGAACTTCCCG 57.830 50.000 15.86 0.00 0.00 5.14
7965 15569 3.214328 ACAACACTGTGATGAACTTCCC 58.786 45.455 22.55 0.00 33.30 3.97
7966 15570 4.900635 AACAACACTGTGATGAACTTCC 57.099 40.909 22.55 0.00 35.37 3.46
7967 15571 6.373779 CCATAACAACACTGTGATGAACTTC 58.626 40.000 22.55 0.00 44.56 3.01
7968 15572 5.241506 CCCATAACAACACTGTGATGAACTT 59.758 40.000 22.55 10.44 44.56 2.66
7970 15574 4.615912 GCCCATAACAACACTGTGATGAAC 60.616 45.833 22.55 4.55 44.56 3.18
7971 15575 3.505680 GCCCATAACAACACTGTGATGAA 59.494 43.478 22.55 11.50 44.56 2.57
7973 15577 3.084039 AGCCCATAACAACACTGTGATG 58.916 45.455 15.86 15.61 42.28 3.07
7974 15578 3.084039 CAGCCCATAACAACACTGTGAT 58.916 45.455 15.86 0.00 35.37 3.06
7975 15579 2.503331 CAGCCCATAACAACACTGTGA 58.497 47.619 15.86 0.00 35.37 3.58
7976 15580 1.541147 CCAGCCCATAACAACACTGTG 59.459 52.381 6.19 6.19 35.37 3.66
7977 15581 1.909700 CCAGCCCATAACAACACTGT 58.090 50.000 0.00 0.00 37.39 3.55
8330 16006 5.416952 CAGGAGGCATGTGAGTATTTTTCTT 59.583 40.000 0.00 0.00 0.00 2.52
8334 16010 3.019564 GCAGGAGGCATGTGAGTATTTT 58.980 45.455 0.00 0.00 43.97 1.82
8335 16011 2.648059 GCAGGAGGCATGTGAGTATTT 58.352 47.619 0.00 0.00 43.97 1.40
8397 16073 1.337728 CCACGACCATAGTGCTTCACA 60.338 52.381 0.00 0.00 38.22 3.58
8398 16074 1.359848 CCACGACCATAGTGCTTCAC 58.640 55.000 0.00 0.00 38.22 3.18
8478 16154 2.176546 CCACGATGCTGCAAACCG 59.823 61.111 6.36 13.18 0.00 4.44
8492 16168 3.977244 CTGCAAACCGGCCACCAC 61.977 66.667 0.00 0.00 0.00 4.16
8528 16204 1.206578 CACACAAACCGACGATGGC 59.793 57.895 0.00 0.00 0.00 4.40
8539 16215 3.866327 TCGACGAATCTGAAACACACAAA 59.134 39.130 0.00 0.00 0.00 2.83
8550 16226 2.911723 GGAAGCGATATCGACGAATCTG 59.088 50.000 28.63 5.00 43.02 2.90
8559 16235 3.183172 CACTGATGTTGGAAGCGATATCG 59.817 47.826 20.79 20.79 43.27 2.92
8565 16241 1.503542 GCCACTGATGTTGGAAGCG 59.496 57.895 0.00 0.00 0.00 4.68
8597 16273 0.546122 TTGGAACATAGCCCAGCGAT 59.454 50.000 0.00 0.00 39.30 4.58
8600 16276 3.264574 TGTTGGAACATAGCCCAGC 57.735 52.632 0.00 0.00 39.30 4.85
8635 16311 0.913205 TAGGTTAGCAATGCCCCGAA 59.087 50.000 0.00 0.00 0.00 4.30
8636 16312 0.468226 CTAGGTTAGCAATGCCCCGA 59.532 55.000 0.00 0.00 0.00 5.14
8637 16313 0.180406 ACTAGGTTAGCAATGCCCCG 59.820 55.000 0.00 0.00 0.00 5.73
8638 16314 1.064685 ACACTAGGTTAGCAATGCCCC 60.065 52.381 0.00 0.00 0.00 5.80
8639 16315 2.420058 ACACTAGGTTAGCAATGCCC 57.580 50.000 0.00 0.00 0.00 5.36
8640 16316 4.783764 AAAACACTAGGTTAGCAATGCC 57.216 40.909 0.00 0.00 39.29 4.40
8670 16346 0.763604 GCTAGAACCCTAGGTCCCCC 60.764 65.000 8.29 0.00 42.05 5.40
8671 16347 2.837411 GCTAGAACCCTAGGTCCCC 58.163 63.158 8.29 0.00 42.05 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.