Multiple sequence alignment - TraesCS1D01G127700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G127700 chr1D 100.000 9446 0 0 1 9446 140518165 140527610 0.000000e+00 17444.0
1 TraesCS1D01G127700 chr1D 89.157 581 58 4 8870 9446 97084006 97084585 0.000000e+00 719.0
2 TraesCS1D01G127700 chr1D 87.002 577 68 5 8868 9440 417975593 417975020 2.220000e-180 643.0
3 TraesCS1D01G127700 chr1D 94.215 121 6 1 8754 8874 126588639 126588758 5.830000e-42 183.0
4 TraesCS1D01G127700 chr1A 93.942 2872 107 33 1 2851 150457905 150455080 0.000000e+00 4277.0
5 TraesCS1D01G127700 chr1A 94.951 1842 62 18 4326 6149 150454449 150452621 0.000000e+00 2857.0
6 TraesCS1D01G127700 chr1A 90.801 1174 50 16 7618 8753 150450883 150449730 0.000000e+00 1517.0
7 TraesCS1D01G127700 chr1A 92.209 1091 32 15 6578 7619 150452083 150450997 0.000000e+00 1495.0
8 TraesCS1D01G127700 chr1A 90.895 659 32 14 3325 3980 150455080 150454447 0.000000e+00 859.0
9 TraesCS1D01G127700 chr1A 92.511 454 15 7 6151 6585 150452564 150452111 4.810000e-177 632.0
10 TraesCS1D01G127700 chr1A 72.632 380 64 32 8851 9218 480971333 480970982 1.310000e-13 89.8
11 TraesCS1D01G127700 chr1A 94.872 39 2 0 435 473 150457518 150457480 2.850000e-05 62.1
12 TraesCS1D01G127700 chr1B 94.336 1695 68 13 6578 8252 198147805 198146119 0.000000e+00 2573.0
13 TraesCS1D01G127700 chr1B 95.097 1346 41 6 474 1812 198154486 198153159 0.000000e+00 2097.0
14 TraesCS1D01G127700 chr1B 94.290 1331 55 10 4827 6149 198149657 198148340 0.000000e+00 2017.0
15 TraesCS1D01G127700 chr1B 90.363 882 52 17 3233 4095 198151465 198150598 0.000000e+00 1127.0
16 TraesCS1D01G127700 chr1B 95.363 647 15 6 2410 3042 198152445 198151800 0.000000e+00 1014.0
17 TraesCS1D01G127700 chr1B 94.413 537 22 4 8341 8874 198145652 198145121 0.000000e+00 819.0
18 TraesCS1D01G127700 chr1B 93.168 483 28 3 1 482 198154988 198154510 0.000000e+00 704.0
19 TraesCS1D01G127700 chr1B 97.264 402 7 2 1862 2259 198152921 198152520 0.000000e+00 678.0
20 TraesCS1D01G127700 chr1B 90.789 456 16 11 6151 6585 198148283 198147833 3.800000e-163 586.0
21 TraesCS1D01G127700 chr1B 83.614 415 61 6 1 411 7785568 7785979 5.350000e-102 383.0
22 TraesCS1D01G127700 chr1B 83.373 415 62 6 1 411 7760236 7760647 2.490000e-100 377.0
23 TraesCS1D01G127700 chr1B 82.892 415 64 6 1 411 7811961 7812372 5.390000e-97 366.0
24 TraesCS1D01G127700 chr1B 94.805 154 5 2 4077 4229 198150423 198150272 4.410000e-58 237.0
25 TraesCS1D01G127700 chr1B 94.215 121 7 0 8754 8874 13450458 13450338 1.620000e-42 185.0
26 TraesCS1D01G127700 chr1B 76.676 343 68 9 11 349 440477822 440478156 7.540000e-41 180.0
27 TraesCS1D01G127700 chr1B 92.562 121 9 0 8754 8874 12996225 12996105 3.510000e-39 174.0
28 TraesCS1D01G127700 chr1B 92.857 98 7 0 4780 4877 198149748 198149651 9.890000e-30 143.0
29 TraesCS1D01G127700 chr1B 92.683 82 4 1 3160 3239 198151586 198151505 5.990000e-22 117.0
30 TraesCS1D01G127700 chr1B 80.189 106 6 6 8250 8346 198146106 198146007 2.200000e-06 65.8
31 TraesCS1D01G127700 chr7A 91.130 575 43 4 8875 9446 112955976 112955407 0.000000e+00 773.0
32 TraesCS1D01G127700 chr7A 88.792 571 61 2 8876 9444 641076638 641077207 0.000000e+00 697.0
33 TraesCS1D01G127700 chr7A 98.990 99 1 0 867 965 16743275 16743177 2.710000e-40 178.0
34 TraesCS1D01G127700 chr7D 89.428 577 56 4 8874 9446 393907414 393906839 0.000000e+00 723.0
35 TraesCS1D01G127700 chr7D 88.441 571 64 1 8876 9444 554812708 554812138 0.000000e+00 688.0
36 TraesCS1D01G127700 chr7D 92.683 123 7 2 8753 8874 638206425 638206304 9.750000e-40 176.0
37 TraesCS1D01G127700 chr7D 92.063 126 7 3 8752 8874 597478060 597477935 3.510000e-39 174.0
38 TraesCS1D01G127700 chr7D 80.667 150 25 4 1534 1681 401838741 401838594 7.750000e-21 113.0
39 TraesCS1D01G127700 chr6D 88.889 576 55 8 8870 9440 121310931 121311502 0.000000e+00 701.0
40 TraesCS1D01G127700 chr6D 88.000 175 21 0 1528 1702 341645542 341645716 3.460000e-49 207.0
41 TraesCS1D01G127700 chr2D 87.916 571 65 3 8877 9444 314902673 314902104 0.000000e+00 669.0
42 TraesCS1D01G127700 chr2D 94.828 116 6 0 8753 8868 369467098 369467213 2.100000e-41 182.0
43 TraesCS1D01G127700 chr4D 88.235 561 61 4 8890 9446 98078237 98077678 0.000000e+00 665.0
44 TraesCS1D01G127700 chr4D 88.060 134 13 3 3649 3781 29647759 29647628 1.270000e-33 156.0
45 TraesCS1D01G127700 chr4D 89.256 121 12 1 3661 3781 29645106 29644987 5.910000e-32 150.0
46 TraesCS1D01G127700 chr3B 92.070 227 12 6 1496 1717 151444499 151444724 1.980000e-81 315.0
47 TraesCS1D01G127700 chr3B 87.879 66 8 0 308 373 780331796 780331731 2.830000e-10 78.7
48 TraesCS1D01G127700 chr3A 96.335 191 7 0 1527 1717 555042277 555042087 1.980000e-81 315.0
49 TraesCS1D01G127700 chr3D 91.189 227 14 6 1496 1717 100853534 100853759 4.290000e-78 303.0
50 TraesCS1D01G127700 chr5D 86.585 246 20 9 2727 2971 331117674 331117907 9.410000e-65 259.0
51 TraesCS1D01G127700 chr5D 89.785 186 19 0 1532 1717 156578424 156578239 1.230000e-58 239.0
52 TraesCS1D01G127700 chr5D 84.545 220 19 3 3319 3538 331118083 331118287 4.470000e-48 204.0
53 TraesCS1D01G127700 chr5D 87.166 187 13 5 2453 2631 331117392 331117575 1.610000e-47 202.0
54 TraesCS1D01G127700 chr5D 92.742 124 8 1 8752 8874 554572915 554573038 2.710000e-40 178.0
55 TraesCS1D01G127700 chr5B 89.785 186 19 0 1532 1717 191036912 191036727 1.230000e-58 239.0
56 TraesCS1D01G127700 chr5A 89.785 186 19 0 1532 1717 239119908 239120093 1.230000e-58 239.0
57 TraesCS1D01G127700 chr6B 87.429 175 22 0 1528 1702 516075213 516075387 1.610000e-47 202.0
58 TraesCS1D01G127700 chr2B 95.041 121 6 0 8753 8873 157678528 157678648 3.480000e-44 191.0
59 TraesCS1D01G127700 chr7B 78.967 271 52 4 4 272 650622933 650623200 7.540000e-41 180.0
60 TraesCS1D01G127700 chr7B 74.644 351 85 4 10 360 600573196 600572850 1.640000e-32 152.0
61 TraesCS1D01G127700 chr7B 80.645 124 18 6 1561 1681 411495668 411495548 3.630000e-14 91.6
62 TraesCS1D01G127700 chr2A 74.618 327 67 11 11 330 430607413 430607730 7.700000e-26 130.0
63 TraesCS1D01G127700 chr2A 100.000 28 0 0 8143 8170 44093829 44093856 1.700000e-02 52.8
64 TraesCS1D01G127700 chr4A 90.000 100 8 2 3646 3745 573288205 573288302 2.770000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G127700 chr1D 140518165 140527610 9445 False 17444.000000 17444 100.000000 1 9446 1 chr1D.!!$F3 9445
1 TraesCS1D01G127700 chr1D 97084006 97084585 579 False 719.000000 719 89.157000 8870 9446 1 chr1D.!!$F1 576
2 TraesCS1D01G127700 chr1D 417975020 417975593 573 True 643.000000 643 87.002000 8868 9440 1 chr1D.!!$R1 572
3 TraesCS1D01G127700 chr1A 150449730 150457905 8175 True 1671.300000 4277 92.883000 1 8753 7 chr1A.!!$R2 8752
4 TraesCS1D01G127700 chr1B 198145121 198154988 9867 True 936.753846 2573 92.739769 1 8874 13 chr1B.!!$R3 8873
5 TraesCS1D01G127700 chr7A 112955407 112955976 569 True 773.000000 773 91.130000 8875 9446 1 chr7A.!!$R2 571
6 TraesCS1D01G127700 chr7A 641076638 641077207 569 False 697.000000 697 88.792000 8876 9444 1 chr7A.!!$F1 568
7 TraesCS1D01G127700 chr7D 393906839 393907414 575 True 723.000000 723 89.428000 8874 9446 1 chr7D.!!$R1 572
8 TraesCS1D01G127700 chr7D 554812138 554812708 570 True 688.000000 688 88.441000 8876 9444 1 chr7D.!!$R3 568
9 TraesCS1D01G127700 chr6D 121310931 121311502 571 False 701.000000 701 88.889000 8870 9440 1 chr6D.!!$F1 570
10 TraesCS1D01G127700 chr2D 314902104 314902673 569 True 669.000000 669 87.916000 8877 9444 1 chr2D.!!$R1 567
11 TraesCS1D01G127700 chr4D 98077678 98078237 559 True 665.000000 665 88.235000 8890 9446 1 chr4D.!!$R1 556
12 TraesCS1D01G127700 chr5D 331117392 331118287 895 False 221.666667 259 86.098667 2453 3538 3 chr5D.!!$F2 1085

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 425 0.101399 ACCTGCTGTCATCGATCGAC 59.899 55.000 22.06 9.35 0.00 4.20 F
1292 1327 0.033228 GAGGAGATGGATCACAGCCG 59.967 60.000 0.00 0.00 35.67 5.52 F
1574 1615 1.057822 CAAGCGCATCGAGAACACG 59.942 57.895 11.47 0.00 0.00 4.49 F
2237 2466 1.484653 CTCTCTCTCTCTCTGGGACGA 59.515 57.143 0.00 0.00 0.00 4.20 F
4007 4592 0.409876 TGGAGTCAGACTAGGCCTGT 59.590 55.000 17.99 11.84 33.57 4.00 F
4946 6051 1.272480 ACATTGTACCCCTTGAAGGCC 60.272 52.381 5.50 0.00 32.73 5.19 F
6032 7150 1.165907 TGCGCCCACTTCTGTTTCTG 61.166 55.000 4.18 0.00 0.00 3.02 F
6899 8183 2.270352 TGCTGGAACCACGAAGAATT 57.730 45.000 0.00 0.00 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1839 1880 0.033699 AAAGATGCAGCTCCCCTTCC 60.034 55.000 4.22 0.00 0.00 3.46 R
3048 3333 0.037590 ACTCCATGCTAACCCGCAAA 59.962 50.000 0.00 0.00 44.06 3.68 R
3050 3335 0.676466 CAACTCCATGCTAACCCGCA 60.676 55.000 0.00 0.00 45.10 5.69 R
4062 4652 0.813184 ATGCATTCTCCACAAAGCCG 59.187 50.000 0.00 0.00 0.00 5.52 R
5037 6142 1.547372 GTCATGCTGGGCAAAGATGTT 59.453 47.619 0.00 0.00 43.62 2.71 R
6149 7269 0.681175 AGCATGGCCCAAAACTGTTC 59.319 50.000 0.00 0.00 0.00 3.18 R
7276 8560 2.204059 AGCCTTCCCTCCAGCTGT 60.204 61.111 13.81 0.00 33.41 4.40 R
8462 10256 2.360553 AATGAGAGACGACACAGCTG 57.639 50.000 13.48 13.48 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 8.394971 TGACAAGAACATACATCAAACAATCT 57.605 30.769 0.00 0.00 0.00 2.40
144 146 1.335132 GCCCCACCATCTAGAACCGA 61.335 60.000 0.00 0.00 0.00 4.69
176 178 1.887242 CCACCCGCATGATGTACCG 60.887 63.158 0.00 0.00 0.00 4.02
190 192 1.001888 TACCGGGAGCATACACCCA 59.998 57.895 6.32 0.00 46.54 4.51
194 196 1.899437 CGGGAGCATACACCCACTGT 61.899 60.000 0.00 0.00 46.54 3.55
199 201 1.176527 GCATACACCCACTGTTGCAT 58.823 50.000 0.00 0.00 37.10 3.96
232 234 2.251963 CGCATGCACACGCTTCAA 59.748 55.556 19.57 0.00 39.64 2.69
234 236 1.599422 CGCATGCACACGCTTCAAAC 61.599 55.000 19.57 0.00 39.64 2.93
256 258 2.345991 CCACCACCATCGAACCGT 59.654 61.111 0.00 0.00 0.00 4.83
306 308 0.112995 ATCCTTGCCAAGCCAGTCAA 59.887 50.000 0.00 0.00 0.00 3.18
388 390 1.103803 CCGTAGCCAAGTCTCTGCTA 58.896 55.000 0.37 0.37 36.57 3.49
399 401 0.107993 TCTCTGCTACACCATGCTGC 60.108 55.000 0.00 0.00 0.00 5.25
409 411 3.200593 CATGCTGCCGAGACCTGC 61.201 66.667 0.00 0.00 0.00 4.85
421 423 2.878743 GACCTGCTGTCATCGATCG 58.121 57.895 9.36 9.36 43.85 3.69
422 424 0.382158 GACCTGCTGTCATCGATCGA 59.618 55.000 21.86 21.86 43.85 3.59
423 425 0.101399 ACCTGCTGTCATCGATCGAC 59.899 55.000 22.06 9.35 0.00 4.20
424 426 0.932123 CCTGCTGTCATCGATCGACG 60.932 60.000 22.06 13.44 44.09 5.12
425 427 1.535636 CTGCTGTCATCGATCGACGC 61.536 60.000 22.06 17.17 42.26 5.19
427 429 2.006062 CTGTCATCGATCGACGCGG 61.006 63.158 22.06 14.08 42.26 6.46
430 432 0.721811 GTCATCGATCGACGCGGTAG 60.722 60.000 22.06 4.80 42.26 3.18
431 433 0.877213 TCATCGATCGACGCGGTAGA 60.877 55.000 22.06 7.01 42.26 2.59
432 434 0.166161 CATCGATCGACGCGGTAGAT 59.834 55.000 22.06 12.11 42.26 1.98
433 435 0.166161 ATCGATCGACGCGGTAGATG 59.834 55.000 22.06 7.30 42.26 2.90
511 545 4.393778 TCCGACCCAGGAGACCCC 62.394 72.222 0.00 0.00 34.92 4.95
529 563 1.557832 CCCGATCAAGGGTTTCCACTA 59.442 52.381 0.00 0.00 46.38 2.74
577 611 1.991264 CTGCAGTGACGATGTCTTCAG 59.009 52.381 5.25 0.00 33.15 3.02
580 614 2.156504 GCAGTGACGATGTCTTCAGTTG 59.843 50.000 0.00 0.00 33.15 3.16
586 620 4.270084 TGACGATGTCTTCAGTTGTTGTTC 59.730 41.667 0.00 0.00 33.15 3.18
672 706 8.768501 AAGAAATATAGGTCTGAAATTTCCCC 57.231 34.615 15.48 12.07 37.29 4.81
734 768 1.755179 AAAGCTGCTACGGATGCAAT 58.245 45.000 0.90 0.00 40.13 3.56
772 806 6.092670 ACACTCATGGTAAATTTCACAGATCG 59.907 38.462 0.00 0.00 0.00 3.69
835 870 6.432472 GGAAATGAAATCAAGAAGAGTCCAGT 59.568 38.462 0.00 0.00 0.00 4.00
965 1000 5.458069 CCTTCCTCATCTCTCACTCTATCCT 60.458 48.000 0.00 0.00 0.00 3.24
1145 1180 7.159322 CATGTAATGGGTAGTAGGCTAGTAG 57.841 44.000 9.34 0.00 41.79 2.57
1249 1284 4.109050 CGCTTACTCTCTAAGAAAGCCAG 58.891 47.826 7.46 0.00 35.64 4.85
1292 1327 0.033228 GAGGAGATGGATCACAGCCG 59.967 60.000 0.00 0.00 35.67 5.52
1418 1459 2.959030 TGTAGATCCATCTGTTCTCCCG 59.041 50.000 0.00 0.00 37.76 5.14
1574 1615 1.057822 CAAGCGCATCGAGAACACG 59.942 57.895 11.47 0.00 0.00 4.49
1577 1618 2.789203 GCGCATCGAGAACACGACC 61.789 63.158 0.30 0.00 44.84 4.79
1957 2186 2.722094 TCCAGCAGTTTCTTTGTGTGT 58.278 42.857 0.00 0.00 0.00 3.72
2232 2461 3.963374 TCTCTCTCTCTCTCTCTCTCTGG 59.037 52.174 0.00 0.00 0.00 3.86
2233 2462 3.041211 TCTCTCTCTCTCTCTCTCTGGG 58.959 54.545 0.00 0.00 0.00 4.45
2234 2463 3.041211 CTCTCTCTCTCTCTCTCTGGGA 58.959 54.545 0.00 0.00 0.00 4.37
2235 2464 2.771943 TCTCTCTCTCTCTCTCTGGGAC 59.228 54.545 0.00 0.00 0.00 4.46
2237 2466 1.484653 CTCTCTCTCTCTCTGGGACGA 59.515 57.143 0.00 0.00 0.00 4.20
2286 2521 4.141482 GCCTTAATTAGATCCCTCACACCA 60.141 45.833 0.00 0.00 0.00 4.17
2287 2522 5.631481 GCCTTAATTAGATCCCTCACACCAA 60.631 44.000 0.00 0.00 0.00 3.67
2288 2523 5.823045 CCTTAATTAGATCCCTCACACCAAC 59.177 44.000 0.00 0.00 0.00 3.77
2344 2581 6.742718 GCAGAAACATGTATGTAATCACACAC 59.257 38.462 0.00 0.00 40.80 3.82
2896 3178 8.589701 AACCTTTCTTTTTCCTCTACTTTTGA 57.410 30.769 0.00 0.00 0.00 2.69
2908 3190 3.813166 TCTACTTTTGAGGCCGACTTTTG 59.187 43.478 0.00 0.00 0.00 2.44
2918 3201 1.799548 GCCGACTTTTGTTTTTGCGGA 60.800 47.619 0.00 0.00 37.09 5.54
2956 3239 4.380973 CGTTTCAGTGAGCTCCTCTGATTA 60.381 45.833 27.44 19.66 42.77 1.75
2957 3240 5.482908 GTTTCAGTGAGCTCCTCTGATTAA 58.517 41.667 27.44 20.49 42.77 1.40
2972 3255 7.554118 TCCTCTGATTAACATTAGCTGAAAAGG 59.446 37.037 0.00 0.00 0.00 3.11
2973 3256 7.088589 TCTGATTAACATTAGCTGAAAAGGC 57.911 36.000 0.00 0.00 0.00 4.35
2974 3257 6.658816 TCTGATTAACATTAGCTGAAAAGGCA 59.341 34.615 0.00 0.00 0.00 4.75
2975 3258 7.340232 TCTGATTAACATTAGCTGAAAAGGCAT 59.660 33.333 0.00 0.00 0.00 4.40
2976 3259 7.259882 TGATTAACATTAGCTGAAAAGGCATG 58.740 34.615 0.00 0.00 0.00 4.06
2977 3260 6.588719 TTAACATTAGCTGAAAAGGCATGT 57.411 33.333 0.00 0.00 30.95 3.21
2978 3261 4.708726 ACATTAGCTGAAAAGGCATGTC 57.291 40.909 0.00 0.00 0.00 3.06
2979 3262 3.127548 ACATTAGCTGAAAAGGCATGTCG 59.872 43.478 0.00 0.00 0.00 4.35
3026 3311 6.677781 AGTGGTATTTTTCCATATGTGTCG 57.322 37.500 1.24 0.00 37.30 4.35
3067 3352 3.399046 TGCGGGTTAGCATGGAGT 58.601 55.556 0.00 0.00 42.92 3.85
3068 3353 1.682849 TGCGGGTTAGCATGGAGTT 59.317 52.632 0.00 0.00 42.92 3.01
3069 3354 0.676466 TGCGGGTTAGCATGGAGTTG 60.676 55.000 0.00 0.00 42.92 3.16
3070 3355 1.993369 GCGGGTTAGCATGGAGTTGC 61.993 60.000 0.00 0.00 43.09 4.17
3099 3384 3.696051 GAGAAGGGCAGCATCAAATAACA 59.304 43.478 0.00 0.00 0.00 2.41
3107 3392 5.065474 GGCAGCATCAAATAACATGCAAAAT 59.935 36.000 6.66 0.00 46.70 1.82
3111 3396 9.036671 CAGCATCAAATAACATGCAAAATATGA 57.963 29.630 6.66 0.00 46.70 2.15
3136 3421 9.911980 GACACTTTTTACACTTACTTTCTGTAC 57.088 33.333 0.00 0.00 0.00 2.90
3137 3422 9.439500 ACACTTTTTACACTTACTTTCTGTACA 57.561 29.630 0.00 0.00 0.00 2.90
3147 3432 6.645415 ACTTACTTTCTGTACATTTCGGTCTG 59.355 38.462 0.00 0.00 0.00 3.51
3157 3442 6.483974 TGTACATTTCGGTCTGTTTTGTACAT 59.516 34.615 8.47 0.00 41.53 2.29
3194 3608 8.616799 TTACAATTTGATAATTAAAGGGGGCT 57.383 30.769 2.79 0.00 32.75 5.19
3197 3611 6.327365 CAATTTGATAATTAAAGGGGGCTCCT 59.673 38.462 0.00 0.00 38.77 3.69
3210 3624 4.044698 AGGGGGCTCCTTATTATGGATTTC 59.955 45.833 0.00 0.00 45.47 2.17
3296 3856 3.543494 GCGTGCATAAATTTGTACTGCAG 59.457 43.478 13.48 13.48 42.92 4.41
3298 3858 5.153513 CGTGCATAAATTTGTACTGCAGTT 58.846 37.500 27.06 7.50 42.92 3.16
3331 3891 8.864069 TCACGCCCAAATGTATTTATTTATTG 57.136 30.769 0.00 0.00 0.00 1.90
3363 3923 5.369833 TGGTTTTACCCGGACATATGTATG 58.630 41.667 8.71 4.08 37.50 2.39
3377 3937 5.839063 ACATATGTATGCACTGTACTACCCT 59.161 40.000 6.56 0.00 37.19 4.34
3378 3938 4.672587 ATGTATGCACTGTACTACCCTG 57.327 45.455 0.00 0.00 0.00 4.45
3436 3998 4.082190 GTGTCTACAGTGATGTGAAGGCTA 60.082 45.833 0.00 0.00 0.00 3.93
3437 3999 4.711846 TGTCTACAGTGATGTGAAGGCTAT 59.288 41.667 0.00 0.00 0.00 2.97
3490 4052 0.645868 GTCAGAATCAAGCCGTACGC 59.354 55.000 10.49 5.63 37.98 4.42
3500 4062 4.201679 CCGTACGCTGCATCGGGA 62.202 66.667 15.16 0.00 39.41 5.14
3551 4134 2.370189 GAGAGAGAGAGAGAGAGGGGAG 59.630 59.091 0.00 0.00 0.00 4.30
3552 4135 2.022035 AGAGAGAGAGAGAGAGGGGAGA 60.022 54.545 0.00 0.00 0.00 3.71
3553 4136 2.982488 GAGAGAGAGAGAGAGGGGAGAT 59.018 54.545 0.00 0.00 0.00 2.75
3554 4137 2.713167 AGAGAGAGAGAGAGGGGAGATG 59.287 54.545 0.00 0.00 0.00 2.90
3647 4230 4.113354 CTCTCCTACGAATAAACACTGGC 58.887 47.826 0.00 0.00 0.00 4.85
3659 4242 0.464452 ACACTGGCTAATAGGGCGTC 59.536 55.000 0.00 0.00 34.31 5.19
3747 4330 0.529773 TGTCAACAGTGCGTGTCCTC 60.530 55.000 0.00 0.00 39.03 3.71
3804 4387 2.002586 CATTCGCTCTCATCGGTGTTT 58.997 47.619 0.00 0.00 0.00 2.83
3805 4388 1.710013 TTCGCTCTCATCGGTGTTTC 58.290 50.000 0.00 0.00 0.00 2.78
3807 4390 1.000394 TCGCTCTCATCGGTGTTTCAA 60.000 47.619 0.00 0.00 0.00 2.69
3808 4391 2.002586 CGCTCTCATCGGTGTTTCAAT 58.997 47.619 0.00 0.00 0.00 2.57
3810 4393 2.096496 GCTCTCATCGGTGTTTCAATGG 59.904 50.000 0.00 0.00 0.00 3.16
3811 4394 3.338249 CTCTCATCGGTGTTTCAATGGT 58.662 45.455 0.00 0.00 0.00 3.55
3815 4398 1.175983 TCGGTGTTTCAATGGTGCCC 61.176 55.000 0.00 0.00 0.00 5.36
3817 4400 1.047801 GGTGTTTCAATGGTGCCCTT 58.952 50.000 0.00 0.00 0.00 3.95
3835 4418 2.354805 CCTTGCAGAGGTAGTGGTAACC 60.355 54.545 6.74 0.00 40.95 2.85
3868 4451 5.220931 CCCTTTGAAGCATGCATTCTACTAC 60.221 44.000 21.98 0.00 0.00 2.73
3871 4454 7.443575 CCTTTGAAGCATGCATTCTACTACTAT 59.556 37.037 21.98 0.00 0.00 2.12
3918 4503 6.723298 TTTTTAATGTTGCTTTGGAGAGGA 57.277 33.333 0.00 0.00 0.00 3.71
3919 4504 6.723298 TTTTAATGTTGCTTTGGAGAGGAA 57.277 33.333 0.00 0.00 0.00 3.36
4005 4590 1.412361 GGATGGAGTCAGACTAGGCCT 60.412 57.143 11.78 11.78 0.00 5.19
4006 4591 1.686052 GATGGAGTCAGACTAGGCCTG 59.314 57.143 17.99 8.18 0.00 4.85
4007 4592 0.409876 TGGAGTCAGACTAGGCCTGT 59.590 55.000 17.99 11.84 33.57 4.00
4008 4593 1.639108 TGGAGTCAGACTAGGCCTGTA 59.361 52.381 17.99 0.00 33.57 2.74
4009 4594 2.245028 TGGAGTCAGACTAGGCCTGTAT 59.755 50.000 17.99 6.05 33.57 2.29
4010 4595 2.888414 GGAGTCAGACTAGGCCTGTATC 59.112 54.545 17.99 10.17 33.57 2.24
4025 4615 7.565680 AGGCCTGTATCCCTTTATATAAATCG 58.434 38.462 3.11 2.53 0.00 3.34
4045 4635 7.643569 AATCGCCATCATAAATATATTGCCA 57.356 32.000 0.00 0.00 0.00 4.92
4046 4636 7.643569 ATCGCCATCATAAATATATTGCCAA 57.356 32.000 0.00 0.00 0.00 4.52
4047 4637 7.643569 TCGCCATCATAAATATATTGCCAAT 57.356 32.000 0.00 0.00 0.00 3.16
4048 4638 8.065473 TCGCCATCATAAATATATTGCCAATT 57.935 30.769 0.00 0.00 0.00 2.32
4050 4640 8.810427 CGCCATCATAAATATATTGCCAATTTC 58.190 33.333 0.00 0.00 0.00 2.17
4065 4655 7.475771 TGCCAATTTCATAAAAATTATCGGC 57.524 32.000 12.55 12.55 37.04 5.54
4067 4657 7.768120 TGCCAATTTCATAAAAATTATCGGCTT 59.232 29.630 17.03 0.00 37.23 4.35
4068 4658 8.611757 GCCAATTTCATAAAAATTATCGGCTTT 58.388 29.630 12.33 0.00 35.27 3.51
4069 4659 9.919348 CCAATTTCATAAAAATTATCGGCTTTG 57.081 29.630 0.00 0.00 0.00 2.77
4072 4662 8.472683 TTTCATAAAAATTATCGGCTTTGTGG 57.527 30.769 0.00 0.00 0.00 4.17
4073 4663 7.397892 TCATAAAAATTATCGGCTTTGTGGA 57.602 32.000 0.00 0.00 0.00 4.02
4075 4665 5.975693 AAAAATTATCGGCTTTGTGGAGA 57.024 34.783 0.00 0.00 0.00 3.71
4119 4898 5.579904 GGTTTTAGTATCTCGGACCTTGAAC 59.420 44.000 0.00 0.00 0.00 3.18
4131 4910 4.694339 GGACCTTGAACATAGCTTACGAT 58.306 43.478 0.00 0.00 0.00 3.73
4227 5007 7.603651 ACACAATTCGTCTACTTTGTCTAGAT 58.396 34.615 0.00 0.00 30.23 1.98
4228 5008 8.088981 ACACAATTCGTCTACTTTGTCTAGATT 58.911 33.333 0.00 0.00 30.23 2.40
4229 5009 8.926710 CACAATTCGTCTACTTTGTCTAGATTT 58.073 33.333 0.00 0.00 30.23 2.17
4230 5010 9.490379 ACAATTCGTCTACTTTGTCTAGATTTT 57.510 29.630 0.00 0.00 0.00 1.82
4270 5050 8.451908 GCTTAATTAAATCTCCTTAAGCTGGA 57.548 34.615 16.40 0.00 46.33 3.86
4271 5051 8.903820 GCTTAATTAAATCTCCTTAAGCTGGAA 58.096 33.333 16.40 0.00 46.33 3.53
4275 5055 8.829373 ATTAAATCTCCTTAAGCTGGAATTGT 57.171 30.769 0.00 0.00 32.61 2.71
4276 5056 8.650143 TTAAATCTCCTTAAGCTGGAATTGTT 57.350 30.769 0.00 0.00 32.61 2.83
4277 5057 9.747898 TTAAATCTCCTTAAGCTGGAATTGTTA 57.252 29.630 0.00 0.00 32.61 2.41
4278 5058 7.872113 AATCTCCTTAAGCTGGAATTGTTAG 57.128 36.000 0.00 0.00 32.61 2.34
4279 5059 6.374417 TCTCCTTAAGCTGGAATTGTTAGT 57.626 37.500 0.00 0.00 32.61 2.24
4280 5060 6.779860 TCTCCTTAAGCTGGAATTGTTAGTT 58.220 36.000 0.00 0.00 32.61 2.24
4281 5061 7.231467 TCTCCTTAAGCTGGAATTGTTAGTTT 58.769 34.615 0.00 0.00 32.61 2.66
4282 5062 7.390718 TCTCCTTAAGCTGGAATTGTTAGTTTC 59.609 37.037 0.00 0.00 32.61 2.78
4283 5063 6.148811 TCCTTAAGCTGGAATTGTTAGTTTCG 59.851 38.462 0.00 0.00 0.00 3.46
4284 5064 3.831715 AGCTGGAATTGTTAGTTTCGC 57.168 42.857 0.00 0.00 0.00 4.70
4285 5065 3.146066 AGCTGGAATTGTTAGTTTCGCA 58.854 40.909 0.00 0.00 0.00 5.10
4286 5066 3.568007 AGCTGGAATTGTTAGTTTCGCAA 59.432 39.130 0.00 0.00 0.00 4.85
4287 5067 4.037446 AGCTGGAATTGTTAGTTTCGCAAA 59.963 37.500 0.00 0.00 0.00 3.68
4288 5068 4.923281 GCTGGAATTGTTAGTTTCGCAAAT 59.077 37.500 0.00 0.00 0.00 2.32
4289 5069 6.072175 AGCTGGAATTGTTAGTTTCGCAAATA 60.072 34.615 0.00 0.00 0.00 1.40
4290 5070 6.751888 GCTGGAATTGTTAGTTTCGCAAATAT 59.248 34.615 0.00 0.00 0.00 1.28
4291 5071 7.253750 GCTGGAATTGTTAGTTTCGCAAATATG 60.254 37.037 0.00 0.00 0.00 1.78
4292 5072 7.821652 TGGAATTGTTAGTTTCGCAAATATGA 58.178 30.769 0.00 0.00 0.00 2.15
4293 5073 7.753132 TGGAATTGTTAGTTTCGCAAATATGAC 59.247 33.333 0.00 0.00 0.00 3.06
4294 5074 7.968405 GGAATTGTTAGTTTCGCAAATATGACT 59.032 33.333 0.00 0.00 0.00 3.41
4295 5075 8.673626 AATTGTTAGTTTCGCAAATATGACTG 57.326 30.769 0.00 0.00 0.00 3.51
4296 5076 5.627172 TGTTAGTTTCGCAAATATGACTGC 58.373 37.500 0.00 0.00 35.14 4.40
4297 5077 5.180304 TGTTAGTTTCGCAAATATGACTGCA 59.820 36.000 5.76 0.00 38.52 4.41
4298 5078 4.970662 AGTTTCGCAAATATGACTGCAT 57.029 36.364 0.00 0.00 38.52 3.96
4299 5079 7.065204 TGTTAGTTTCGCAAATATGACTGCATA 59.935 33.333 0.00 0.00 41.00 3.14
4300 5080 6.624352 AGTTTCGCAAATATGACTGCATAT 57.376 33.333 0.00 0.00 46.92 1.78
4309 5089 3.845781 ATGACTGCATATTTCCCTCGT 57.154 42.857 0.00 0.00 31.57 4.18
4310 5090 2.905075 TGACTGCATATTTCCCTCGTG 58.095 47.619 0.00 0.00 0.00 4.35
4311 5091 2.236146 TGACTGCATATTTCCCTCGTGT 59.764 45.455 0.00 0.00 0.00 4.49
4312 5092 3.270877 GACTGCATATTTCCCTCGTGTT 58.729 45.455 0.00 0.00 0.00 3.32
4313 5093 3.686016 ACTGCATATTTCCCTCGTGTTT 58.314 40.909 0.00 0.00 0.00 2.83
4314 5094 4.839121 ACTGCATATTTCCCTCGTGTTTA 58.161 39.130 0.00 0.00 0.00 2.01
4315 5095 5.250200 ACTGCATATTTCCCTCGTGTTTAA 58.750 37.500 0.00 0.00 0.00 1.52
4316 5096 5.885912 ACTGCATATTTCCCTCGTGTTTAAT 59.114 36.000 0.00 0.00 0.00 1.40
4317 5097 7.051623 ACTGCATATTTCCCTCGTGTTTAATA 58.948 34.615 0.00 0.00 0.00 0.98
4318 5098 7.012044 ACTGCATATTTCCCTCGTGTTTAATAC 59.988 37.037 0.00 0.00 0.00 1.89
4319 5099 6.824196 TGCATATTTCCCTCGTGTTTAATACA 59.176 34.615 0.00 0.00 0.00 2.29
4320 5100 7.500892 TGCATATTTCCCTCGTGTTTAATACAT 59.499 33.333 0.00 0.00 39.39 2.29
4321 5101 8.349983 GCATATTTCCCTCGTGTTTAATACATT 58.650 33.333 0.00 0.00 39.39 2.71
4322 5102 9.663904 CATATTTCCCTCGTGTTTAATACATTG 57.336 33.333 0.00 0.00 39.39 2.82
4323 5103 7.696992 ATTTCCCTCGTGTTTAATACATTGT 57.303 32.000 0.00 0.00 39.39 2.71
4324 5104 8.795842 ATTTCCCTCGTGTTTAATACATTGTA 57.204 30.769 0.00 0.00 39.39 2.41
4325 5105 7.837202 TTCCCTCGTGTTTAATACATTGTAG 57.163 36.000 2.53 0.00 39.39 2.74
4326 5106 6.342906 TCCCTCGTGTTTAATACATTGTAGG 58.657 40.000 2.53 0.00 39.39 3.18
4327 5107 6.154877 TCCCTCGTGTTTAATACATTGTAGGA 59.845 38.462 2.53 0.00 39.39 2.94
4370 5150 7.562135 ACTCGATTCTTTTGGCTAATAACCTA 58.438 34.615 0.00 0.00 0.00 3.08
4441 5221 3.278574 CAGTGGTACATTGGTGGTATGG 58.721 50.000 0.00 0.00 42.60 2.74
4453 5233 9.953565 ACATTGGTGGTATGGTAATGTATATAC 57.046 33.333 5.89 5.89 39.43 1.47
4480 5261 8.485392 TGATATGTGATGAGTTAGATGTTCCAA 58.515 33.333 0.00 0.00 0.00 3.53
4603 5387 5.360714 ACCAAATCACACAGTTCACTTTGAT 59.639 36.000 0.06 0.00 0.00 2.57
4623 5407 5.139727 TGATGACATCCTTTTGGTTCTTGT 58.860 37.500 12.90 0.00 41.38 3.16
4711 5496 2.979814 ATTTTCCCTTAAATGCCGCC 57.020 45.000 0.00 0.00 0.00 6.13
4713 5498 1.470051 TTTCCCTTAAATGCCGCCTC 58.530 50.000 0.00 0.00 0.00 4.70
4729 5514 2.601763 CGCCTCCGTAAACTTATGTGAC 59.398 50.000 0.00 0.00 0.00 3.67
4793 5853 4.399219 TGGCTAGCTACTGACTATACTGG 58.601 47.826 15.72 0.00 0.00 4.00
4856 5960 8.871686 AAAATACAAGCACTTTTCGAAAAGAT 57.128 26.923 42.25 28.82 46.39 2.40
4893 5997 5.041191 ACACAACTGGAATTCTCTTGAGT 57.959 39.130 5.23 6.50 0.00 3.41
4894 5998 5.059833 ACACAACTGGAATTCTCTTGAGTC 58.940 41.667 5.23 0.00 0.00 3.36
4896 6000 5.178996 CACAACTGGAATTCTCTTGAGTCAG 59.821 44.000 5.23 4.17 0.00 3.51
4944 6049 2.041081 TGGACATTGTACCCCTTGAAGG 59.959 50.000 3.69 3.69 34.30 3.46
4945 6050 2.092323 GACATTGTACCCCTTGAAGGC 58.908 52.381 5.50 0.00 32.73 4.35
4946 6051 1.272480 ACATTGTACCCCTTGAAGGCC 60.272 52.381 5.50 0.00 32.73 5.19
5012 6117 6.323266 CACACTGTAGTACAAGCTAGTTAGG 58.677 44.000 4.21 0.00 0.00 2.69
5020 6125 3.097614 ACAAGCTAGTTAGGTCGTGGAT 58.902 45.455 0.00 0.00 32.81 3.41
5037 6142 2.291475 TGGATAAGGCTTGTGATGGCAA 60.291 45.455 10.69 0.00 0.00 4.52
5273 6378 9.295825 TCTTGACAACCAATATTTGAAGTATGT 57.704 29.630 0.00 0.00 33.68 2.29
5327 6432 4.833380 TCTAAGATCCCCTCAAATCTACCG 59.167 45.833 0.00 0.00 32.01 4.02
5334 6439 3.057734 CCCTCAAATCTACCGCGTTATC 58.942 50.000 4.92 0.00 0.00 1.75
5347 6452 4.142773 ACCGCGTTATCATAAAAGTTGGTG 60.143 41.667 4.92 0.00 0.00 4.17
5351 6456 7.063456 CGCGTTATCATAAAAGTTGGTGATAG 58.937 38.462 0.00 0.00 35.63 2.08
5417 6523 6.702716 TGGTAATTTCCGAAAAACAGAACT 57.297 33.333 0.00 0.00 0.00 3.01
5718 6824 4.796495 CCGGCCCCTAGGTTGCAC 62.796 72.222 19.04 9.71 34.57 4.57
5722 6828 4.388499 CCCCTAGGTTGCACGCGT 62.388 66.667 5.58 5.58 0.00 6.01
5723 6829 2.813908 CCCTAGGTTGCACGCGTC 60.814 66.667 9.86 5.12 0.00 5.19
5774 6890 3.334583 TTCCATCTAACTGTGCTCCAC 57.665 47.619 0.00 0.00 34.56 4.02
5780 6896 1.544691 CTAACTGTGCTCCACCGTACT 59.455 52.381 0.00 0.00 31.04 2.73
5806 6922 7.900782 AATGATTCCTTTGAGCAAAATCTTG 57.099 32.000 0.00 0.00 35.49 3.02
5836 6952 3.456277 ACATCCTGGTCATAGGGAACTTC 59.544 47.826 0.00 0.00 43.67 3.01
5902 7018 1.421268 TCATGTTTGGACCAGCAGACT 59.579 47.619 0.00 0.00 0.00 3.24
5958 7076 5.067413 GGACACTTTCATGCATCATTCAGAT 59.933 40.000 0.00 0.00 37.48 2.90
5970 7088 1.696336 CATTCAGATGGGAGACGGGAT 59.304 52.381 0.00 0.00 0.00 3.85
5971 7089 2.767644 TTCAGATGGGAGACGGGATA 57.232 50.000 0.00 0.00 0.00 2.59
5972 7090 3.260269 TTCAGATGGGAGACGGGATAT 57.740 47.619 0.00 0.00 0.00 1.63
5973 7091 3.260269 TCAGATGGGAGACGGGATATT 57.740 47.619 0.00 0.00 0.00 1.28
6022 7140 1.203052 CAAATCAGAAATGCGCCCACT 59.797 47.619 4.18 0.00 0.00 4.00
6032 7150 1.165907 TGCGCCCACTTCTGTTTCTG 61.166 55.000 4.18 0.00 0.00 3.02
6149 7269 7.044181 TGTTGAGATCAAGATTTAGTAGGCAG 58.956 38.462 0.00 0.00 36.39 4.85
6189 7364 5.945784 TGCTTGCTAGTTTCACCTGAATAAT 59.054 36.000 0.00 0.00 33.54 1.28
6395 7589 9.956720 AGTTTGTCTTCATGAGTTTATTTTCTG 57.043 29.630 0.00 0.00 0.00 3.02
6441 7645 9.042008 GCTCAGTAAGTATTTTTGGAATATCGA 57.958 33.333 0.00 0.00 0.00 3.59
6476 7681 9.660180 AAAACCATAGTTTGAAAAACTTTGCTA 57.340 25.926 10.40 0.00 45.54 3.49
6514 7719 9.442033 GATAAATACCACAGTTTTATAAACCGC 57.558 33.333 0.00 0.00 0.00 5.68
6562 7767 7.448748 TCTGCAGTATTTTAAAAAGAGGTCC 57.551 36.000 14.67 0.00 0.00 4.46
6565 7770 6.208599 TGCAGTATTTTAAAAAGAGGTCCTGG 59.791 38.462 4.44 0.00 0.00 4.45
6615 7855 7.765695 AATTGTCCAGACATTGAAATACTGT 57.234 32.000 0.48 0.00 41.52 3.55
6719 7961 2.671070 CACCCTTCATGGCGGAGT 59.329 61.111 0.00 0.00 0.00 3.85
6860 8131 4.749245 AAGTACGCCTAATAATGCATGC 57.251 40.909 11.82 11.82 0.00 4.06
6899 8183 2.270352 TGCTGGAACCACGAAGAATT 57.730 45.000 0.00 0.00 0.00 2.17
6973 8257 6.161381 AGTGGAAATTCACATTCAGCAATTC 58.839 36.000 0.00 0.00 39.93 2.17
6979 8263 4.145876 TCACATTCAGCAATTCGTGAAC 57.854 40.909 1.87 0.00 35.55 3.18
7276 8560 1.423584 TGAGCCACAGAGACCTGAAA 58.576 50.000 0.00 0.00 43.02 2.69
7497 8789 2.565841 AGCGTCTTTTCTTCTTGCAGT 58.434 42.857 0.00 0.00 0.00 4.40
7951 9359 4.037923 ACTGTAGGCATGGTTTTCACTTTG 59.962 41.667 0.00 0.00 0.00 2.77
7957 9365 3.807553 CATGGTTTTCACTTTGGGCTTT 58.192 40.909 0.00 0.00 0.00 3.51
7965 9373 5.529581 TTCACTTTGGGCTTTAGGAAAAG 57.470 39.130 0.00 0.00 44.21 2.27
7978 9386 6.524101 TTTAGGAAAAGTTCAGCAACAACT 57.476 33.333 0.00 0.00 35.51 3.16
8005 9413 6.805713 AGTCACCGAAATTCAGTGAAATTTT 58.194 32.000 12.99 6.90 41.87 1.82
8221 9632 9.624697 TCTTAATGTTTTCTAATGCATGTGAAC 57.375 29.630 0.00 2.55 0.00 3.18
8233 9644 4.735985 TGCATGTGAACAATTGAGCATAC 58.264 39.130 13.59 6.11 0.00 2.39
8327 9761 3.133721 CAGGAAAAATGACACAACCCCAA 59.866 43.478 0.00 0.00 0.00 4.12
8393 10187 4.874396 GTGCTTTCCTTAACTATAACCGCT 59.126 41.667 0.00 0.00 0.00 5.52
8579 10375 3.190535 ACACGCACAATCAACTTTATCCC 59.809 43.478 0.00 0.00 0.00 3.85
8580 10376 3.190327 CACGCACAATCAACTTTATCCCA 59.810 43.478 0.00 0.00 0.00 4.37
8659 10455 9.765795 ATACTACTTAATTATCTCAGTGCAACC 57.234 33.333 0.00 0.00 37.80 3.77
8666 10462 0.685097 TCTCAGTGCAACCCAGGTAC 59.315 55.000 0.00 0.00 37.80 3.34
8667 10463 0.687354 CTCAGTGCAACCCAGGTACT 59.313 55.000 0.00 0.00 37.80 2.73
8668 10464 1.072331 CTCAGTGCAACCCAGGTACTT 59.928 52.381 0.00 0.00 37.80 2.24
8818 10622 7.459795 TGATGCACACAACCATCTTTATTAA 57.540 32.000 0.00 0.00 38.84 1.40
8844 10648 9.739276 ATTATTCACCAGAGTCTGACAAAATTA 57.261 29.630 22.09 9.43 32.44 1.40
8860 10664 8.527810 TGACAAAATTAATACAAGGATCAACCC 58.472 33.333 0.00 0.00 40.05 4.11
8868 10672 1.208165 AAGGATCAACCCGAAGCCCT 61.208 55.000 0.00 0.00 40.05 5.19
8942 10746 2.224606 CAGAGTGTCACAAGCAACCAT 58.775 47.619 5.62 0.00 0.00 3.55
8979 10784 2.031682 CACAGTAGCAACCAACAGAAGC 60.032 50.000 0.00 0.00 0.00 3.86
8988 10793 3.470645 ACCAACAGAAGCGAGTTTAGT 57.529 42.857 0.00 0.00 0.00 2.24
9057 10862 3.132646 AGACAAGATAGAAGCCAGCAGAG 59.867 47.826 0.00 0.00 0.00 3.35
9063 10868 1.566211 AGAAGCCAGCAGAGCTAAGA 58.434 50.000 0.00 0.00 40.49 2.10
9127 10932 4.371786 GAATCTTGGATGTCATAGCGTCA 58.628 43.478 0.00 0.00 0.00 4.35
9213 11021 1.630369 AGCAACTCACAGGATTAGCCA 59.370 47.619 0.00 0.00 40.02 4.75
9239 11047 6.317893 GGAAGGAAAGCTCGATGGTAAATTTA 59.682 38.462 0.00 0.00 0.00 1.40
9303 11111 6.895204 CCCAACCCAGAAAATCCTTTTAGATA 59.105 38.462 0.00 0.00 31.94 1.98
9350 11158 3.057736 TCCTTAAGTCAACGAAGGACGAG 60.058 47.826 12.76 0.00 43.02 4.18
9376 11184 1.269413 CCAGTTCACTTGCAGCCAAAG 60.269 52.381 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 1.434188 AGGTGTGGGTGATGACTTCA 58.566 50.000 0.00 0.00 0.00 3.02
144 146 3.771160 GTGGATCGGCGGTGACCT 61.771 66.667 7.21 0.00 0.00 3.85
176 178 0.328258 AACAGTGGGTGTATGCTCCC 59.672 55.000 13.53 13.53 46.06 4.30
190 192 1.368579 GCTTTGGGCATGCAACAGT 59.631 52.632 21.36 0.00 41.35 3.55
232 234 4.360405 GATGGTGGTGGGGGCGTT 62.360 66.667 0.00 0.00 0.00 4.84
256 258 4.934797 ATCTTTTCTGGAGATGGGTCAA 57.065 40.909 0.00 0.00 32.79 3.18
388 390 2.046892 GTCTCGGCAGCATGGTGT 60.047 61.111 24.73 0.00 35.86 4.16
409 411 2.006062 CCGCGTCGATCGATGACAG 61.006 63.158 35.29 24.60 42.86 3.51
416 418 2.075489 GCATCTACCGCGTCGATCG 61.075 63.158 9.36 9.36 43.12 3.69
419 421 2.486663 ATGGCATCTACCGCGTCGA 61.487 57.895 4.92 0.00 0.00 4.20
420 422 2.027605 ATGGCATCTACCGCGTCG 59.972 61.111 4.92 0.00 0.00 5.12
421 423 2.598632 GCATGGCATCTACCGCGTC 61.599 63.158 4.92 0.00 0.00 5.19
422 424 2.588877 GCATGGCATCTACCGCGT 60.589 61.111 4.92 0.00 0.00 6.01
423 425 3.349006 GGCATGGCATCTACCGCG 61.349 66.667 15.47 0.00 0.00 6.46
424 426 3.349006 CGGCATGGCATCTACCGC 61.349 66.667 20.37 8.82 37.05 5.68
425 427 3.349006 GCGGCATGGCATCTACCG 61.349 66.667 22.30 22.30 46.50 4.02
427 429 1.963338 GGAGCGGCATGGCATCTAC 60.963 63.158 20.37 12.15 34.64 2.59
430 432 3.589881 GTGGAGCGGCATGGCATC 61.590 66.667 20.37 15.59 34.64 3.91
511 545 2.500098 TCCTAGTGGAAACCCTTGATCG 59.500 50.000 0.00 0.00 39.87 3.69
526 560 1.002087 CTCGTTTGGGCTGTTCCTAGT 59.998 52.381 0.00 0.00 34.39 2.57
529 563 1.073199 CCTCGTTTGGGCTGTTCCT 59.927 57.895 0.00 0.00 34.39 3.36
661 695 6.006275 TGAAAATTGTTGGGGGAAATTTCA 57.994 33.333 19.49 0.00 33.51 2.69
714 748 1.533625 TTGCATCCGTAGCAGCTTTT 58.466 45.000 0.00 0.00 43.75 2.27
724 758 5.065988 GTGTCCTTAATTACATTGCATCCGT 59.934 40.000 0.00 0.00 0.00 4.69
734 768 6.121776 ACCATGAGTGTGTCCTTAATTACA 57.878 37.500 0.00 0.00 0.00 2.41
772 806 5.102313 CCTTTTCTTCTTTTGTGTGGTGAC 58.898 41.667 0.00 0.00 0.00 3.67
835 870 1.074889 GGCCCTTGGTGTTTCTTCCTA 59.925 52.381 0.00 0.00 0.00 2.94
965 1000 1.323412 GCGCTAGAGAGAGATGGGAA 58.677 55.000 0.00 0.00 0.00 3.97
1138 1173 7.821846 AGCCATGATTTTATTCTAGCTACTAGC 59.178 37.037 0.00 0.00 42.84 3.42
1144 1179 8.875168 AGTAGTAGCCATGATTTTATTCTAGCT 58.125 33.333 0.00 0.00 0.00 3.32
1145 1180 8.930760 CAGTAGTAGCCATGATTTTATTCTAGC 58.069 37.037 0.00 0.00 0.00 3.42
1249 1284 0.687354 TGGTGGTGCCTTTCTCTCTC 59.313 55.000 0.00 0.00 38.35 3.20
1292 1327 4.762289 TGGAGATAGGAAGAAAAGGAGC 57.238 45.455 0.00 0.00 0.00 4.70
1418 1459 5.467735 ACGGACCAAAAGTTGTAGTATCAAC 59.532 40.000 0.00 1.94 45.33 3.18
1520 1561 2.587194 CCCATCTTCTCGGCAGCG 60.587 66.667 0.00 0.00 0.00 5.18
1577 1618 1.966451 GAAGGTGACCTGCCGGTTG 60.966 63.158 4.15 0.00 45.73 3.77
1838 1879 1.931007 AAGATGCAGCTCCCCTTCCC 61.931 60.000 4.22 0.00 0.00 3.97
1839 1880 0.033699 AAAGATGCAGCTCCCCTTCC 60.034 55.000 4.22 0.00 0.00 3.46
1840 1881 1.064832 AGAAAGATGCAGCTCCCCTTC 60.065 52.381 4.22 5.38 0.00 3.46
2232 2461 0.187851 TCCTATCCCCTCCTTCGTCC 59.812 60.000 0.00 0.00 0.00 4.79
2233 2462 1.964933 CTTCCTATCCCCTCCTTCGTC 59.035 57.143 0.00 0.00 0.00 4.20
2234 2463 1.574339 TCTTCCTATCCCCTCCTTCGT 59.426 52.381 0.00 0.00 0.00 3.85
2235 2464 2.383442 TCTTCCTATCCCCTCCTTCG 57.617 55.000 0.00 0.00 0.00 3.79
2237 2466 2.322543 ACCTTCTTCCTATCCCCTCCTT 59.677 50.000 0.00 0.00 0.00 3.36
2269 2504 4.104086 TGAGTTGGTGTGAGGGATCTAAT 58.896 43.478 0.00 0.00 0.00 1.73
2270 2505 3.516586 TGAGTTGGTGTGAGGGATCTAA 58.483 45.455 0.00 0.00 0.00 2.10
2271 2506 3.184382 TGAGTTGGTGTGAGGGATCTA 57.816 47.619 0.00 0.00 0.00 1.98
2272 2507 2.030027 TGAGTTGGTGTGAGGGATCT 57.970 50.000 0.00 0.00 0.00 2.75
2286 2521 9.943163 CTATCGATCGATTATGTATCATGAGTT 57.057 33.333 33.46 8.43 36.17 3.01
2287 2522 9.331282 TCTATCGATCGATTATGTATCATGAGT 57.669 33.333 33.46 8.81 36.17 3.41
2288 2523 9.810231 CTCTATCGATCGATTATGTATCATGAG 57.190 37.037 33.46 19.88 36.17 2.90
2315 2550 6.914215 GTGATTACATACATGTTTCTGCCATG 59.086 38.462 2.30 1.98 44.17 3.66
2371 2608 7.004086 CAGGTGGGAAAATAGAATAGGCAATA 58.996 38.462 0.00 0.00 0.00 1.90
2373 2610 5.200483 CAGGTGGGAAAATAGAATAGGCAA 58.800 41.667 0.00 0.00 0.00 4.52
2374 2611 4.229582 ACAGGTGGGAAAATAGAATAGGCA 59.770 41.667 0.00 0.00 0.00 4.75
2896 3178 1.801025 CGCAAAAACAAAAGTCGGCCT 60.801 47.619 0.00 0.00 0.00 5.19
2956 3239 4.379813 CGACATGCCTTTTCAGCTAATGTT 60.380 41.667 0.00 0.00 0.00 2.71
2957 3240 3.127548 CGACATGCCTTTTCAGCTAATGT 59.872 43.478 0.00 0.00 0.00 2.71
2975 3258 8.696175 CGTACATTATAGTTTTGCATATCGACA 58.304 33.333 0.00 0.00 0.00 4.35
2976 3259 8.697067 ACGTACATTATAGTTTTGCATATCGAC 58.303 33.333 0.00 0.00 0.00 4.20
2977 3260 8.806177 ACGTACATTATAGTTTTGCATATCGA 57.194 30.769 0.00 0.00 0.00 3.59
3047 3332 1.173043 CTCCATGCTAACCCGCAAAA 58.827 50.000 0.00 0.00 44.06 2.44
3048 3333 0.037590 ACTCCATGCTAACCCGCAAA 59.962 50.000 0.00 0.00 44.06 3.68
3049 3334 0.037590 AACTCCATGCTAACCCGCAA 59.962 50.000 0.00 0.00 44.06 4.85
3050 3335 0.676466 CAACTCCATGCTAACCCGCA 60.676 55.000 0.00 0.00 45.10 5.69
3051 3336 1.993369 GCAACTCCATGCTAACCCGC 61.993 60.000 0.00 0.00 43.06 6.13
3052 3337 2.098293 GCAACTCCATGCTAACCCG 58.902 57.895 0.00 0.00 43.06 5.28
3059 3344 4.970662 TCTCAAATAAGCAACTCCATGC 57.029 40.909 0.00 0.00 46.78 4.06
3060 3345 5.163581 CCCTTCTCAAATAAGCAACTCCATG 60.164 44.000 0.00 0.00 0.00 3.66
3061 3346 4.952335 CCCTTCTCAAATAAGCAACTCCAT 59.048 41.667 0.00 0.00 0.00 3.41
3062 3347 4.335416 CCCTTCTCAAATAAGCAACTCCA 58.665 43.478 0.00 0.00 0.00 3.86
3063 3348 3.129462 GCCCTTCTCAAATAAGCAACTCC 59.871 47.826 0.00 0.00 0.00 3.85
3064 3349 3.758554 TGCCCTTCTCAAATAAGCAACTC 59.241 43.478 0.00 0.00 0.00 3.01
3065 3350 3.760684 CTGCCCTTCTCAAATAAGCAACT 59.239 43.478 0.00 0.00 0.00 3.16
3066 3351 3.674410 GCTGCCCTTCTCAAATAAGCAAC 60.674 47.826 0.00 0.00 0.00 4.17
3067 3352 2.493278 GCTGCCCTTCTCAAATAAGCAA 59.507 45.455 0.00 0.00 0.00 3.91
3068 3353 2.094675 GCTGCCCTTCTCAAATAAGCA 58.905 47.619 0.00 0.00 0.00 3.91
3069 3354 2.094675 TGCTGCCCTTCTCAAATAAGC 58.905 47.619 0.00 0.00 0.00 3.09
3070 3355 3.949754 TGATGCTGCCCTTCTCAAATAAG 59.050 43.478 0.00 0.00 0.00 1.73
3071 3356 3.966979 TGATGCTGCCCTTCTCAAATAA 58.033 40.909 0.00 0.00 0.00 1.40
3072 3357 3.650281 TGATGCTGCCCTTCTCAAATA 57.350 42.857 0.00 0.00 0.00 1.40
3073 3358 2.519771 TGATGCTGCCCTTCTCAAAT 57.480 45.000 0.00 0.00 0.00 2.32
3074 3359 2.291209 TTGATGCTGCCCTTCTCAAA 57.709 45.000 0.00 0.00 0.00 2.69
3075 3360 2.291209 TTTGATGCTGCCCTTCTCAA 57.709 45.000 0.00 0.00 0.00 3.02
3076 3361 2.519771 ATTTGATGCTGCCCTTCTCA 57.480 45.000 0.00 0.00 0.00 3.27
3077 3362 3.696051 TGTTATTTGATGCTGCCCTTCTC 59.304 43.478 0.00 0.00 0.00 2.87
3099 3384 9.762933 AAGTGTAAAAAGTGTCATATTTTGCAT 57.237 25.926 14.91 3.83 39.57 3.96
3111 3396 9.439500 TGTACAGAAAGTAAGTGTAAAAAGTGT 57.561 29.630 0.00 0.00 33.72 3.55
3254 3814 3.181397 GCACGCACATAAATGCTTCATT 58.819 40.909 0.00 0.00 43.80 2.57
3272 3832 3.300590 GCAGTACAAATTTATGCACGCAC 59.699 43.478 0.00 0.00 36.88 5.34
3276 3836 7.406799 AAAACTGCAGTACAAATTTATGCAC 57.593 32.000 22.01 0.00 41.65 4.57
3296 3856 4.272261 ACATTTGGGCGTGAAATGAAAAAC 59.728 37.500 17.18 0.00 41.44 2.43
3298 3858 4.065321 ACATTTGGGCGTGAAATGAAAA 57.935 36.364 17.18 0.00 41.44 2.29
3331 3891 3.827876 TCCGGGTAAAACCAAGATTTTCC 59.172 43.478 0.00 0.00 41.02 3.13
3343 3903 4.817464 GTGCATACATATGTCCGGGTAAAA 59.183 41.667 12.68 0.00 36.11 1.52
3363 3923 1.616865 TGACACAGGGTAGTACAGTGC 59.383 52.381 15.48 10.84 33.69 4.40
3436 3998 1.686325 ATTGGCTCCGTACGCAGGAT 61.686 55.000 10.49 0.00 37.13 3.24
3437 3999 2.355986 ATTGGCTCCGTACGCAGGA 61.356 57.895 10.49 0.69 36.20 3.86
3490 4052 2.002586 CTGTTGTAGTTCCCGATGCAG 58.997 52.381 0.00 0.00 0.00 4.41
3500 4062 6.013725 TCTCTCTCTCTCTCTCTGTTGTAGTT 60.014 42.308 0.00 0.00 0.00 2.24
3551 4134 1.977293 GCTCACCAGTCTCCCCCATC 61.977 65.000 0.00 0.00 0.00 3.51
3552 4135 1.997874 GCTCACCAGTCTCCCCCAT 60.998 63.158 0.00 0.00 0.00 4.00
3553 4136 2.607750 GCTCACCAGTCTCCCCCA 60.608 66.667 0.00 0.00 0.00 4.96
3554 4137 2.284995 AGCTCACCAGTCTCCCCC 60.285 66.667 0.00 0.00 0.00 5.40
3647 4230 3.797184 GCACAGAGAAGACGCCCTATTAG 60.797 52.174 0.00 0.00 0.00 1.73
3747 4330 2.736144 ATGCAAAGCCACTGTTCATG 57.264 45.000 0.00 0.00 0.00 3.07
3815 4398 2.301870 TGGTTACCACTACCTCTGCAAG 59.698 50.000 0.00 0.00 36.60 4.01
3817 4400 2.018355 TGGTTACCACTACCTCTGCA 57.982 50.000 0.00 0.00 36.60 4.41
3919 4504 9.998106 AGTAATGTCACTAACTCACTACATTTT 57.002 29.630 0.00 0.00 38.25 1.82
4005 4590 8.544622 TGATGGCGATTTATATAAAGGGATACA 58.455 33.333 13.15 7.88 39.74 2.29
4006 4591 8.958119 TGATGGCGATTTATATAAAGGGATAC 57.042 34.615 13.15 3.24 0.00 2.24
4009 4594 9.967451 TTTATGATGGCGATTTATATAAAGGGA 57.033 29.630 13.15 0.00 0.00 4.20
4024 4614 8.706492 AAATTGGCAATATATTTATGATGGCG 57.294 30.769 14.05 0.00 33.74 5.69
4025 4615 9.656040 TGAAATTGGCAATATATTTATGATGGC 57.344 29.630 14.05 0.00 0.00 4.40
4046 4636 9.097257 CCACAAAGCCGATAATTTTTATGAAAT 57.903 29.630 0.00 0.00 0.00 2.17
4047 4637 8.307483 TCCACAAAGCCGATAATTTTTATGAAA 58.693 29.630 0.00 0.00 0.00 2.69
4048 4638 7.831753 TCCACAAAGCCGATAATTTTTATGAA 58.168 30.769 0.00 0.00 0.00 2.57
4050 4640 7.479980 TCTCCACAAAGCCGATAATTTTTATG 58.520 34.615 0.00 0.00 0.00 1.90
4052 4642 7.455641 TTCTCCACAAAGCCGATAATTTTTA 57.544 32.000 0.00 0.00 0.00 1.52
4056 4646 4.202050 GCATTCTCCACAAAGCCGATAATT 60.202 41.667 0.00 0.00 0.00 1.40
4057 4647 3.316308 GCATTCTCCACAAAGCCGATAAT 59.684 43.478 0.00 0.00 0.00 1.28
4059 4649 2.288666 GCATTCTCCACAAAGCCGATA 58.711 47.619 0.00 0.00 0.00 2.92
4060 4650 1.098050 GCATTCTCCACAAAGCCGAT 58.902 50.000 0.00 0.00 0.00 4.18
4062 4652 0.813184 ATGCATTCTCCACAAAGCCG 59.187 50.000 0.00 0.00 0.00 5.52
4063 4653 1.547372 ACATGCATTCTCCACAAAGCC 59.453 47.619 0.00 0.00 0.00 4.35
4064 4654 3.191162 TGTACATGCATTCTCCACAAAGC 59.809 43.478 0.00 0.00 0.00 3.51
4065 4655 5.571784 ATGTACATGCATTCTCCACAAAG 57.428 39.130 7.78 0.00 0.00 2.77
4067 4657 8.922931 AATATATGTACATGCATTCTCCACAA 57.077 30.769 18.81 0.00 0.00 3.33
4068 4658 8.922931 AAATATATGTACATGCATTCTCCACA 57.077 30.769 18.81 0.00 0.00 4.17
4069 4659 9.616634 CAAAATATATGTACATGCATTCTCCAC 57.383 33.333 18.81 0.00 0.00 4.02
4070 4660 8.795513 CCAAAATATATGTACATGCATTCTCCA 58.204 33.333 18.81 0.00 0.00 3.86
4071 4661 8.796475 ACCAAAATATATGTACATGCATTCTCC 58.204 33.333 18.81 0.00 0.00 3.71
4098 4877 5.988310 TGTTCAAGGTCCGAGATACTAAA 57.012 39.130 0.00 0.00 0.00 1.85
4102 4881 4.038162 AGCTATGTTCAAGGTCCGAGATAC 59.962 45.833 0.00 0.00 0.00 2.24
4119 4898 8.948631 ATACATGGGAAATATCGTAAGCTATG 57.051 34.615 0.00 0.00 37.18 2.23
4149 4928 8.023021 TCTGCACCAAGAGAACTATTACATAT 57.977 34.615 0.00 0.00 0.00 1.78
4150 4929 7.124298 ACTCTGCACCAAGAGAACTATTACATA 59.876 37.037 7.62 0.00 45.59 2.29
4151 4930 6.070538 ACTCTGCACCAAGAGAACTATTACAT 60.071 38.462 7.62 0.00 45.59 2.29
4249 5029 9.259832 ACAATTCCAGCTTAAGGAGATTTAATT 57.740 29.630 4.29 0.00 36.33 1.40
4250 5030 8.829373 ACAATTCCAGCTTAAGGAGATTTAAT 57.171 30.769 4.29 0.00 36.33 1.40
4251 5031 8.650143 AACAATTCCAGCTTAAGGAGATTTAA 57.350 30.769 4.29 0.00 36.33 1.52
4252 5032 9.396022 CTAACAATTCCAGCTTAAGGAGATTTA 57.604 33.333 4.29 0.00 36.33 1.40
4253 5033 7.890655 ACTAACAATTCCAGCTTAAGGAGATTT 59.109 33.333 4.29 0.00 36.33 2.17
4254 5034 7.406104 ACTAACAATTCCAGCTTAAGGAGATT 58.594 34.615 4.29 0.00 36.33 2.40
4255 5035 6.963322 ACTAACAATTCCAGCTTAAGGAGAT 58.037 36.000 4.29 0.00 36.33 2.75
4256 5036 6.374417 ACTAACAATTCCAGCTTAAGGAGA 57.626 37.500 4.29 0.00 36.33 3.71
4257 5037 7.454260 AAACTAACAATTCCAGCTTAAGGAG 57.546 36.000 4.29 0.00 36.33 3.69
4258 5038 6.148811 CGAAACTAACAATTCCAGCTTAAGGA 59.851 38.462 4.29 0.00 0.00 3.36
4259 5039 6.314784 CGAAACTAACAATTCCAGCTTAAGG 58.685 40.000 4.29 0.00 0.00 2.69
4260 5040 5.795441 GCGAAACTAACAATTCCAGCTTAAG 59.205 40.000 0.00 0.00 0.00 1.85
4261 5041 5.239744 TGCGAAACTAACAATTCCAGCTTAA 59.760 36.000 0.00 0.00 0.00 1.85
4262 5042 4.757657 TGCGAAACTAACAATTCCAGCTTA 59.242 37.500 0.00 0.00 0.00 3.09
4263 5043 3.568007 TGCGAAACTAACAATTCCAGCTT 59.432 39.130 0.00 0.00 0.00 3.74
4264 5044 3.146066 TGCGAAACTAACAATTCCAGCT 58.854 40.909 0.00 0.00 0.00 4.24
4265 5045 3.552604 TGCGAAACTAACAATTCCAGC 57.447 42.857 0.00 0.00 0.00 4.85
4266 5046 7.967854 TCATATTTGCGAAACTAACAATTCCAG 59.032 33.333 0.00 0.00 0.00 3.86
4267 5047 7.753132 GTCATATTTGCGAAACTAACAATTCCA 59.247 33.333 0.00 0.00 0.00 3.53
4268 5048 7.968405 AGTCATATTTGCGAAACTAACAATTCC 59.032 33.333 0.00 0.00 0.00 3.01
4269 5049 8.788813 CAGTCATATTTGCGAAACTAACAATTC 58.211 33.333 0.00 0.00 0.00 2.17
4270 5050 7.273381 GCAGTCATATTTGCGAAACTAACAATT 59.727 33.333 0.00 0.00 0.00 2.32
4271 5051 6.747280 GCAGTCATATTTGCGAAACTAACAAT 59.253 34.615 0.00 0.00 0.00 2.71
4272 5052 6.083630 GCAGTCATATTTGCGAAACTAACAA 58.916 36.000 0.00 0.00 0.00 2.83
4273 5053 5.180304 TGCAGTCATATTTGCGAAACTAACA 59.820 36.000 0.00 0.00 43.13 2.41
4274 5054 5.627172 TGCAGTCATATTTGCGAAACTAAC 58.373 37.500 0.00 0.00 43.13 2.34
4275 5055 5.871465 TGCAGTCATATTTGCGAAACTAA 57.129 34.783 0.00 0.00 43.13 2.24
4276 5056 7.728847 ATATGCAGTCATATTTGCGAAACTA 57.271 32.000 0.00 0.00 41.78 2.24
4277 5057 4.970662 ATGCAGTCATATTTGCGAAACT 57.029 36.364 0.00 0.00 43.13 2.66
4287 5067 5.221722 ACACGAGGGAAATATGCAGTCATAT 60.222 40.000 0.00 0.00 45.28 1.78
4288 5068 4.100963 ACACGAGGGAAATATGCAGTCATA 59.899 41.667 0.00 0.00 39.31 2.15
4289 5069 3.118261 ACACGAGGGAAATATGCAGTCAT 60.118 43.478 0.00 0.00 36.73 3.06
4290 5070 2.236146 ACACGAGGGAAATATGCAGTCA 59.764 45.455 0.00 0.00 0.00 3.41
4291 5071 2.906354 ACACGAGGGAAATATGCAGTC 58.094 47.619 0.00 0.00 0.00 3.51
4292 5072 3.350219 AACACGAGGGAAATATGCAGT 57.650 42.857 0.00 0.00 0.00 4.40
4293 5073 5.811399 TTAAACACGAGGGAAATATGCAG 57.189 39.130 0.00 0.00 0.00 4.41
4294 5074 6.824196 TGTATTAAACACGAGGGAAATATGCA 59.176 34.615 0.00 0.00 31.43 3.96
4295 5075 7.254227 TGTATTAAACACGAGGGAAATATGC 57.746 36.000 0.00 0.00 31.43 3.14
4296 5076 9.663904 CAATGTATTAAACACGAGGGAAATATG 57.336 33.333 0.00 0.00 42.09 1.78
4297 5077 9.403583 ACAATGTATTAAACACGAGGGAAATAT 57.596 29.630 0.00 0.00 42.09 1.28
4298 5078 8.795842 ACAATGTATTAAACACGAGGGAAATA 57.204 30.769 0.00 0.00 42.09 1.40
4299 5079 7.696992 ACAATGTATTAAACACGAGGGAAAT 57.303 32.000 0.00 0.00 42.09 2.17
4300 5080 7.334921 CCTACAATGTATTAAACACGAGGGAAA 59.665 37.037 0.00 0.00 42.09 3.13
4301 5081 6.819649 CCTACAATGTATTAAACACGAGGGAA 59.180 38.462 0.00 0.00 42.09 3.97
4302 5082 6.154877 TCCTACAATGTATTAAACACGAGGGA 59.845 38.462 0.00 0.00 42.09 4.20
4303 5083 6.342906 TCCTACAATGTATTAAACACGAGGG 58.657 40.000 0.00 0.00 42.09 4.30
4304 5084 7.837202 TTCCTACAATGTATTAAACACGAGG 57.163 36.000 0.00 0.00 42.09 4.63
4341 5121 9.525409 GTTATTAGCCAAAAGAATCGAGTACTA 57.475 33.333 0.00 0.00 0.00 1.82
4353 5133 6.767902 TCAGAGCATAGGTTATTAGCCAAAAG 59.232 38.462 0.00 0.00 0.00 2.27
4370 5150 7.833786 TCATTGCTAAAGAAAAATCAGAGCAT 58.166 30.769 0.00 0.00 38.19 3.79
4403 5183 4.102524 ACCACTGTCAAACATAAGACTGGA 59.897 41.667 0.00 0.00 37.83 3.86
4453 5233 8.146412 TGGAACATCTAACTCATCACATATCAG 58.854 37.037 0.00 0.00 0.00 2.90
4458 5238 6.715280 ACTTGGAACATCTAACTCATCACAT 58.285 36.000 0.00 0.00 39.30 3.21
4461 5241 9.739276 ATTTAACTTGGAACATCTAACTCATCA 57.261 29.630 0.00 0.00 39.30 3.07
4480 5261 9.691362 GAAAAACATGTGTCACCATATTTAACT 57.309 29.630 0.00 0.00 0.00 2.24
4506 5287 5.243730 TGGAGCCTAGAAACAATTTTGAAGG 59.756 40.000 0.00 0.00 0.00 3.46
4524 5305 5.003804 TGTAAAGAATCAGAAACTGGAGCC 58.996 41.667 0.00 0.00 31.51 4.70
4603 5387 4.277476 ACACAAGAACCAAAAGGATGTCA 58.723 39.130 0.00 0.00 0.00 3.58
4623 5407 7.377398 AGAAAATTGCATGCACTAATGTAACA 58.623 30.769 22.58 1.08 35.40 2.41
4700 5485 1.738908 GTTTACGGAGGCGGCATTTAA 59.261 47.619 13.08 0.00 0.00 1.52
4711 5496 5.699458 AGTTTGGTCACATAAGTTTACGGAG 59.301 40.000 0.00 0.00 0.00 4.63
4713 5498 5.934935 AGTTTGGTCACATAAGTTTACGG 57.065 39.130 0.00 0.00 0.00 4.02
4729 5514 8.190784 GGTGTTTGATATCCATCTTTAGTTTGG 58.809 37.037 0.00 0.00 31.93 3.28
4810 5870 2.552599 TGTTGGTGAATCTAACGGCA 57.447 45.000 0.00 0.00 39.81 5.69
4944 6049 1.967319 TTCCAATATGAAGAGGCGGC 58.033 50.000 0.00 0.00 0.00 6.53
4945 6050 2.880890 CCTTTCCAATATGAAGAGGCGG 59.119 50.000 0.00 0.00 0.00 6.13
4946 6051 3.808728 TCCTTTCCAATATGAAGAGGCG 58.191 45.455 0.00 0.00 0.00 5.52
5012 6117 2.380084 TCACAAGCCTTATCCACGAC 57.620 50.000 0.00 0.00 0.00 4.34
5020 6125 2.591923 TGTTTGCCATCACAAGCCTTA 58.408 42.857 0.00 0.00 30.49 2.69
5037 6142 1.547372 GTCATGCTGGGCAAAGATGTT 59.453 47.619 0.00 0.00 43.62 2.71
5309 6414 1.605712 CGCGGTAGATTTGAGGGGATC 60.606 57.143 0.00 0.00 0.00 3.36
5316 6421 7.493320 ACTTTTATGATAACGCGGTAGATTTGA 59.507 33.333 10.76 0.00 0.00 2.69
5327 6432 8.138365 TCTATCACCAACTTTTATGATAACGC 57.862 34.615 0.00 0.00 34.49 4.84
5396 6502 9.078753 TCAAAAGTTCTGTTTTTCGGAAATTAC 57.921 29.630 3.67 6.64 45.16 1.89
5692 6798 3.629035 TAGGGGCCGGGTTGCTAGT 62.629 63.158 2.18 0.00 0.00 2.57
5718 6824 1.741706 TGAAGTTCCTAGTAGGACGCG 59.258 52.381 18.97 3.53 45.78 6.01
5721 6827 3.447944 CAGGGTGAAGTTCCTAGTAGGAC 59.552 52.174 18.97 13.38 45.78 3.85
5722 6828 3.709587 CAGGGTGAAGTTCCTAGTAGGA 58.290 50.000 15.33 15.33 44.10 2.94
5723 6829 2.168728 GCAGGGTGAAGTTCCTAGTAGG 59.831 54.545 10.24 10.24 36.46 3.18
5774 6890 5.584649 TGCTCAAAGGAATCATTTAGTACGG 59.415 40.000 0.00 0.00 0.00 4.02
5780 6896 9.426837 CAAGATTTTGCTCAAAGGAATCATTTA 57.573 29.630 0.00 0.00 0.00 1.40
5806 6922 3.853355 ATGACCAGGATGTCCAATCTC 57.147 47.619 0.00 0.00 38.89 2.75
5836 6952 5.106157 GGACATTCCTTTGTGTAATGACCAG 60.106 44.000 9.75 0.00 41.78 4.00
5958 7076 3.117246 ACTGTCTAATATCCCGTCTCCCA 60.117 47.826 0.00 0.00 0.00 4.37
5970 7088 7.549134 CCTCAGTTTGCATGTTACTGTCTAATA 59.451 37.037 17.55 3.76 40.08 0.98
5971 7089 6.372659 CCTCAGTTTGCATGTTACTGTCTAAT 59.627 38.462 17.55 0.00 40.08 1.73
5972 7090 5.700832 CCTCAGTTTGCATGTTACTGTCTAA 59.299 40.000 17.55 4.51 40.08 2.10
5973 7091 5.221641 ACCTCAGTTTGCATGTTACTGTCTA 60.222 40.000 17.55 4.76 40.08 2.59
6022 7140 5.505780 TCTTTCTTCCCAACAGAAACAGAA 58.494 37.500 0.00 0.00 35.71 3.02
6032 7150 2.029918 AGCGCATTTCTTTCTTCCCAAC 60.030 45.455 11.47 0.00 0.00 3.77
6109 7229 6.881065 TGATCTCAACAAATCTAAACCAGAGG 59.119 38.462 0.00 0.00 36.48 3.69
6149 7269 0.681175 AGCATGGCCCAAAACTGTTC 59.319 50.000 0.00 0.00 0.00 3.18
6214 7399 6.814146 AGACGAATCATTTTCCTTCTGTCTAC 59.186 38.462 0.00 0.00 34.34 2.59
6395 7589 5.043189 AGCCAAACGAAAGCTATGTTTAC 57.957 39.130 9.67 6.55 34.29 2.01
6476 7681 5.592282 TGTGGTATTTATCGATGCCAAACAT 59.408 36.000 8.54 0.00 42.31 2.71
6580 7785 6.757897 TGTCTGGACAATTAATGAATGGTC 57.242 37.500 1.86 1.86 43.04 4.02
6615 7855 7.406031 TGAAAACAGTGGTAATGTAAAACCA 57.594 32.000 0.00 0.00 43.47 3.67
6632 7872 9.826574 ACACTAGACACTAGTATTTTGAAAACA 57.173 29.630 10.46 0.00 0.00 2.83
6816 8058 8.712103 ACTTAAGTAAAGTAAAGGTGGACTCTT 58.288 33.333 6.26 0.00 46.85 2.85
6899 8183 7.094506 TGTGAAATTACGAGAAGAGTAGTGCTA 60.095 37.037 0.00 0.00 0.00 3.49
7276 8560 2.204059 AGCCTTCCCTCCAGCTGT 60.204 61.111 13.81 0.00 33.41 4.40
7306 8590 5.880901 ACCTTTCTTGCTCTAATCTTTCCA 58.119 37.500 0.00 0.00 0.00 3.53
7379 8663 5.820947 GTGAAGGTCAGGAACTAGACAAAAA 59.179 40.000 0.00 0.00 37.92 1.94
7380 8664 5.104693 TGTGAAGGTCAGGAACTAGACAAAA 60.105 40.000 0.00 0.00 37.92 2.44
7951 9359 2.890945 TGCTGAACTTTTCCTAAAGCCC 59.109 45.455 0.00 0.00 43.72 5.19
7957 9365 5.189928 TCAGTTGTTGCTGAACTTTTCCTA 58.810 37.500 0.00 0.00 41.93 2.94
7965 9373 3.487544 GGTGACTTCAGTTGTTGCTGAAC 60.488 47.826 4.61 0.00 46.74 3.18
8005 9413 7.986553 AATTAATATTTGGGTCCATTGTCCA 57.013 32.000 0.00 0.00 0.00 4.02
8114 9525 7.944729 ATTTCAGGCATTACAGTAGACATTT 57.055 32.000 0.00 0.00 0.00 2.32
8233 9644 9.674824 GTTGCATATCTCCATTAGAATTTTCAG 57.325 33.333 0.00 0.00 37.89 3.02
8285 9711 8.974060 TTCCTGTTTCTACTAATGTTTTCACT 57.026 30.769 0.00 0.00 0.00 3.41
8293 9719 9.612620 GTGTCATTTTTCCTGTTTCTACTAATG 57.387 33.333 0.00 0.00 0.00 1.90
8294 9720 9.349713 TGTGTCATTTTTCCTGTTTCTACTAAT 57.650 29.630 0.00 0.00 0.00 1.73
8295 9721 8.740123 TGTGTCATTTTTCCTGTTTCTACTAA 57.260 30.769 0.00 0.00 0.00 2.24
8327 9761 7.510685 TGAGAATACTTAGGTGCTCCTATTGAT 59.489 37.037 15.08 6.28 44.68 2.57
8408 10202 6.014669 TGCAAAGATAAACAAGGGCACTAAAT 60.015 34.615 0.00 0.00 0.00 1.40
8425 10219 3.228188 TCACCTTCCAACTGCAAAGAT 57.772 42.857 0.00 0.00 0.00 2.40
8462 10256 2.360553 AATGAGAGACGACACAGCTG 57.639 50.000 13.48 13.48 0.00 4.24
8513 10309 9.077674 CATGGAAGTTCTAGTTATATATCACGC 57.922 37.037 2.25 0.00 0.00 5.34
8659 10455 6.274157 AGATATATGCGAAGAAGTACCTGG 57.726 41.667 0.00 0.00 0.00 4.45
8666 10462 9.862371 AAAGGTACATAGATATATGCGAAGAAG 57.138 33.333 7.26 0.00 0.00 2.85
8668 10464 9.856488 GAAAAGGTACATAGATATATGCGAAGA 57.144 33.333 7.26 0.00 0.00 2.87
8765 10569 2.447959 AGGCCGGGGGTAATCCTC 60.448 66.667 2.18 0.00 35.33 3.71
8776 10580 4.478371 TGCTGATGCAGAGGCCGG 62.478 66.667 0.00 0.00 45.31 6.13
8818 10622 8.641498 AATTTTGTCAGACTCTGGTGAATAAT 57.359 30.769 6.20 0.00 31.51 1.28
8844 10648 3.279434 GCTTCGGGTTGATCCTTGTATT 58.721 45.455 0.00 0.00 36.25 1.89
8928 10732 3.115554 GTTGTTGATGGTTGCTTGTGAC 58.884 45.455 0.00 0.00 0.00 3.67
8942 10746 1.476085 CTGTGTTGGCTTGGTTGTTGA 59.524 47.619 0.00 0.00 0.00 3.18
8979 10784 4.665645 CGTTTGCCATGTACACTAAACTCG 60.666 45.833 16.92 8.16 0.00 4.18
9057 10862 1.207377 GAATCGGTCGGCGTCTTAGC 61.207 60.000 6.85 0.00 0.00 3.09
9213 11021 1.280457 ACCATCGAGCTTTCCTTCCT 58.720 50.000 0.00 0.00 0.00 3.36
9239 11047 0.608856 TGCTGTGGACCATTCGCAAT 60.609 50.000 11.44 0.00 0.00 3.56
9323 11131 4.217983 TCCTTCGTTGACTTAAGGAGACTC 59.782 45.833 7.53 0.00 42.96 3.36
9338 11146 0.535797 GGAATCCCTCGTCCTTCGTT 59.464 55.000 0.00 0.00 40.80 3.85
9350 11158 1.815003 CTGCAAGTGAACTGGAATCCC 59.185 52.381 0.00 0.00 0.00 3.85
9376 11184 2.937591 TCGTGTGGAGTTGTATTCGTC 58.062 47.619 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.