Multiple sequence alignment - TraesCS1D01G127600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G127600 chr1D 100.000 2809 0 0 1 2809 140056970 140054162 0.000000e+00 5188.0
1 TraesCS1D01G127600 chr1D 95.918 49 2 0 754 802 414174438 414174390 2.320000e-11 80.5
2 TraesCS1D01G127600 chr1D 94.000 50 3 0 755 804 452594887 452594936 3.000000e-10 76.8
3 TraesCS1D01G127600 chr1B 92.164 1876 84 24 801 2640 198486052 198487900 0.000000e+00 2591.0
4 TraesCS1D01G127600 chr1B 89.262 447 37 4 314 752 198485606 198486049 1.470000e-152 549.0
5 TraesCS1D01G127600 chr1B 97.059 102 2 1 1 102 198484076 198484176 1.340000e-38 171.0
6 TraesCS1D01G127600 chr1B 88.596 114 4 1 2635 2748 198546057 198546161 2.270000e-26 130.0
7 TraesCS1D01G127600 chr1A 96.465 792 25 2 861 1651 150860402 150861191 0.000000e+00 1304.0
8 TraesCS1D01G127600 chr1A 85.235 447 57 5 314 752 150797740 150798185 4.270000e-123 451.0
9 TraesCS1D01G127600 chr1A 93.160 307 19 1 2140 2446 150862580 150862884 1.530000e-122 449.0
10 TraesCS1D01G127600 chr1A 90.615 309 14 2 1752 2059 150861951 150862245 2.030000e-106 396.0
11 TraesCS1D01G127600 chr1A 90.492 305 19 2 2452 2746 150863054 150863358 7.290000e-106 394.0
12 TraesCS1D01G127600 chr3D 76.033 242 43 13 1362 1591 104293043 104292805 8.230000e-21 111.0
13 TraesCS1D01G127600 chr3B 76.033 242 40 15 1362 1591 155418923 155418688 2.960000e-20 110.0
14 TraesCS1D01G127600 chr3B 97.872 47 1 0 754 800 771328972 771329018 6.450000e-12 82.4
15 TraesCS1D01G127600 chr7D 84.270 89 13 1 2722 2809 574117510 574117422 4.990000e-13 86.1
16 TraesCS1D01G127600 chr7D 97.872 47 1 0 754 800 576889252 576889206 6.450000e-12 82.4
17 TraesCS1D01G127600 chr7B 97.959 49 1 0 754 802 117797397 117797349 4.990000e-13 86.1
18 TraesCS1D01G127600 chr7B 95.918 49 2 0 754 802 566627561 566627609 2.320000e-11 80.5
19 TraesCS1D01G127600 chr3A 97.872 47 1 0 754 800 719613978 719614024 6.450000e-12 82.4
20 TraesCS1D01G127600 chr5B 97.826 46 1 0 755 800 100718994 100719039 2.320000e-11 80.5
21 TraesCS1D01G127600 chr5D 95.833 48 2 0 754 801 76023590 76023637 8.340000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G127600 chr1D 140054162 140056970 2808 True 5188.000000 5188 100.000000 1 2809 1 chr1D.!!$R1 2808
1 TraesCS1D01G127600 chr1B 198484076 198487900 3824 False 1103.666667 2591 92.828333 1 2640 3 chr1B.!!$F2 2639
2 TraesCS1D01G127600 chr1A 150860402 150863358 2956 False 635.750000 1304 92.683000 861 2746 4 chr1A.!!$F2 1885

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
747 1983 0.321671 CGACACAACCATGGGAGACT 59.678 55.0 18.09 0.0 32.82 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2154 4356 0.178876 TCAAGGTCCACTCCCCATCA 60.179 55.0 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 0.542702 AAAAGGGGGTGCCACATCAG 60.543 55.000 0.00 0.00 0.00 2.90
46 47 2.570181 GGTGCCACATCAGCTTGC 59.430 61.111 0.00 0.00 0.00 4.01
106 107 5.153950 AGGTCTACTGATGAACACCTTTC 57.846 43.478 0.00 0.00 0.00 2.62
107 108 4.593206 AGGTCTACTGATGAACACCTTTCA 59.407 41.667 0.00 0.00 0.00 2.69
108 109 4.691216 GGTCTACTGATGAACACCTTTCAC 59.309 45.833 0.00 0.00 0.00 3.18
109 110 4.691216 GTCTACTGATGAACACCTTTCACC 59.309 45.833 0.00 0.00 0.00 4.02
110 111 2.494059 ACTGATGAACACCTTTCACCG 58.506 47.619 0.00 0.00 0.00 4.94
151 1349 2.113139 ACACGCACAGGAAAGGGG 59.887 61.111 0.00 0.00 0.00 4.79
157 1355 1.536676 CACAGGAAAGGGGTGGTGT 59.463 57.895 0.00 0.00 0.00 4.16
204 1404 2.684843 CGTGGCAGCTTCTCCTTGC 61.685 63.158 0.00 0.00 37.11 4.01
216 1416 1.689813 TCTCCTTGCGTTAGGTTGTCA 59.310 47.619 5.11 0.00 36.63 3.58
218 1418 1.139256 TCCTTGCGTTAGGTTGTCACA 59.861 47.619 5.11 0.00 36.63 3.58
227 1427 2.184167 GGTTGTCACACACCACCGG 61.184 63.158 0.00 0.00 31.29 5.28
228 1428 2.184167 GTTGTCACACACCACCGGG 61.184 63.158 6.32 0.00 41.29 5.73
245 1445 1.228367 GGGACCATGCCATGCCTAG 60.228 63.158 0.00 0.00 0.00 3.02
246 1446 1.708993 GGGACCATGCCATGCCTAGA 61.709 60.000 0.00 0.00 0.00 2.43
258 1458 2.366167 CCTAGAGCCAGGCCCACT 60.366 66.667 8.22 8.22 0.00 4.00
260 1460 3.397613 CTAGAGCCAGGCCCACTGC 62.398 68.421 8.22 0.00 46.14 4.40
290 1490 2.169330 AGGAGTAGTCTTCGTGGGAAC 58.831 52.381 0.00 0.00 0.00 3.62
291 1491 1.891150 GGAGTAGTCTTCGTGGGAACA 59.109 52.381 0.00 0.00 38.70 3.18
317 1517 1.146263 GGTGGGACAATCCGCTAGG 59.854 63.158 0.00 0.00 44.16 3.02
333 1561 2.419436 GCTAGGAAGGTGAGGCTTTCTC 60.419 54.545 0.00 0.00 42.74 2.87
385 1614 5.924356 TGTGTCAAAGGACTCATACTCAAA 58.076 37.500 0.00 0.00 44.61 2.69
456 1686 4.742659 GGTTAAGTCTCGATGAAGATCTGC 59.257 45.833 0.00 0.00 0.00 4.26
461 1691 3.911365 GTCTCGATGAAGATCTGCATACG 59.089 47.826 16.65 19.19 0.00 3.06
463 1693 3.890128 TCGATGAAGATCTGCATACGAC 58.110 45.455 23.33 10.59 0.00 4.34
465 1695 3.550842 CGATGAAGATCTGCATACGACCA 60.551 47.826 16.65 0.00 0.00 4.02
467 1697 2.120232 GAAGATCTGCATACGACCACG 58.880 52.381 0.00 0.00 45.75 4.94
504 1734 2.093447 GTGTGGTATGGACTCCTTCTGG 60.093 54.545 0.00 0.00 0.00 3.86
524 1754 2.755103 GGATTTTGTAGTCAGCCAAGGG 59.245 50.000 0.00 0.00 0.00 3.95
539 1769 2.832201 GGGCTGCCATCCTCAAGC 60.832 66.667 22.05 0.00 0.00 4.01
575 1805 3.330701 AGAGGTGCCAACATCTTCCTTTA 59.669 43.478 0.00 0.00 44.85 1.85
634 1864 7.617723 AGATCTACATGTCACCTTAGAAGAAGT 59.382 37.037 0.00 0.00 0.00 3.01
636 1866 8.645814 TCTACATGTCACCTTAGAAGAAGTAA 57.354 34.615 0.00 0.00 0.00 2.24
638 1868 6.166982 ACATGTCACCTTAGAAGAAGTAAGC 58.833 40.000 0.00 0.00 0.00 3.09
639 1869 5.801531 TGTCACCTTAGAAGAAGTAAGCA 57.198 39.130 0.00 0.00 0.00 3.91
641 1871 6.769512 TGTCACCTTAGAAGAAGTAAGCATT 58.230 36.000 0.00 0.00 0.00 3.56
642 1872 7.224297 TGTCACCTTAGAAGAAGTAAGCATTT 58.776 34.615 0.00 0.00 0.00 2.32
643 1873 7.719633 TGTCACCTTAGAAGAAGTAAGCATTTT 59.280 33.333 0.00 0.00 0.00 1.82
644 1874 8.568794 GTCACCTTAGAAGAAGTAAGCATTTTT 58.431 33.333 0.00 0.00 0.00 1.94
645 1875 8.567948 TCACCTTAGAAGAAGTAAGCATTTTTG 58.432 33.333 0.00 0.00 0.00 2.44
646 1876 8.567948 CACCTTAGAAGAAGTAAGCATTTTTGA 58.432 33.333 0.00 0.00 0.00 2.69
653 1889 6.393171 AGAAGTAAGCATTTTTGAGGATTGC 58.607 36.000 0.00 0.00 0.00 3.56
657 1893 3.934068 AGCATTTTTGAGGATTGCTTGG 58.066 40.909 0.00 0.00 40.58 3.61
659 1895 3.666274 CATTTTTGAGGATTGCTTGGCA 58.334 40.909 0.00 0.00 36.47 4.92
660 1896 4.258543 CATTTTTGAGGATTGCTTGGCAT 58.741 39.130 0.00 0.00 38.76 4.40
686 1922 1.675714 CGCTAAGCAAGACCACCATGA 60.676 52.381 0.00 0.00 0.00 3.07
688 1924 2.002586 CTAAGCAAGACCACCATGACG 58.997 52.381 0.00 0.00 0.00 4.35
691 1927 1.308069 GCAAGACCACCATGACGCAT 61.308 55.000 0.00 0.00 0.00 4.73
695 1931 1.555075 AGACCACCATGACGCATACTT 59.445 47.619 0.00 0.00 0.00 2.24
698 1934 1.665679 CCACCATGACGCATACTTGAC 59.334 52.381 0.00 0.00 0.00 3.18
699 1935 2.345876 CACCATGACGCATACTTGACA 58.654 47.619 0.00 0.00 0.00 3.58
701 1937 3.001634 CACCATGACGCATACTTGACATC 59.998 47.826 0.00 0.00 0.00 3.06
702 1938 2.545526 CCATGACGCATACTTGACATCC 59.454 50.000 0.00 0.00 0.00 3.51
747 1983 0.321671 CGACACAACCATGGGAGACT 59.678 55.000 18.09 0.00 32.82 3.24
752 1988 1.905215 ACAACCATGGGAGACTCTCAG 59.095 52.381 18.09 0.41 25.53 3.35
753 1989 1.905215 CAACCATGGGAGACTCTCAGT 59.095 52.381 18.09 1.09 25.53 3.41
754 1990 3.099905 CAACCATGGGAGACTCTCAGTA 58.900 50.000 18.09 0.00 25.53 2.74
755 1991 3.474798 ACCATGGGAGACTCTCAGTAA 57.525 47.619 18.09 0.00 25.53 2.24
756 1992 3.791320 ACCATGGGAGACTCTCAGTAAA 58.209 45.455 18.09 0.00 25.53 2.01
757 1993 3.772025 ACCATGGGAGACTCTCAGTAAAG 59.228 47.826 18.09 0.27 25.53 1.85
758 1994 3.772025 CCATGGGAGACTCTCAGTAAAGT 59.228 47.826 11.47 0.00 25.53 2.66
759 1995 4.223923 CCATGGGAGACTCTCAGTAAAGTT 59.776 45.833 11.47 0.00 25.53 2.66
760 1996 5.422331 CCATGGGAGACTCTCAGTAAAGTTA 59.578 44.000 11.47 0.00 25.53 2.24
761 1997 6.406400 CCATGGGAGACTCTCAGTAAAGTTAG 60.406 46.154 11.47 0.00 25.53 2.34
762 1998 5.642165 TGGGAGACTCTCAGTAAAGTTAGT 58.358 41.667 0.00 0.00 31.08 2.24
763 1999 6.787170 TGGGAGACTCTCAGTAAAGTTAGTA 58.213 40.000 0.00 0.00 31.08 1.82
764 2000 6.658391 TGGGAGACTCTCAGTAAAGTTAGTAC 59.342 42.308 0.00 0.00 31.08 2.73
765 2001 6.658391 GGGAGACTCTCAGTAAAGTTAGTACA 59.342 42.308 8.35 0.00 31.08 2.90
766 2002 7.176340 GGGAGACTCTCAGTAAAGTTAGTACAA 59.824 40.741 8.35 0.00 31.08 2.41
767 2003 8.574737 GGAGACTCTCAGTAAAGTTAGTACAAA 58.425 37.037 8.35 0.00 31.08 2.83
768 2004 9.962783 GAGACTCTCAGTAAAGTTAGTACAAAA 57.037 33.333 0.76 0.00 0.00 2.44
773 2009 9.280174 TCTCAGTAAAGTTAGTACAAAATTGGG 57.720 33.333 0.00 0.00 0.00 4.12
774 2010 8.983702 TCAGTAAAGTTAGTACAAAATTGGGT 57.016 30.769 0.00 0.00 0.00 4.51
775 2011 9.059260 TCAGTAAAGTTAGTACAAAATTGGGTC 57.941 33.333 0.00 0.00 0.00 4.46
776 2012 8.842280 CAGTAAAGTTAGTACAAAATTGGGTCA 58.158 33.333 0.00 0.00 0.00 4.02
777 2013 9.582648 AGTAAAGTTAGTACAAAATTGGGTCAT 57.417 29.630 0.00 0.00 0.00 3.06
778 2014 9.836076 GTAAAGTTAGTACAAAATTGGGTCATC 57.164 33.333 0.00 0.00 0.00 2.92
779 2015 8.706322 AAAGTTAGTACAAAATTGGGTCATCT 57.294 30.769 0.00 0.00 0.00 2.90
780 2016 9.802039 AAAGTTAGTACAAAATTGGGTCATCTA 57.198 29.630 0.00 0.00 0.00 1.98
781 2017 9.975218 AAGTTAGTACAAAATTGGGTCATCTAT 57.025 29.630 0.00 0.00 0.00 1.98
782 2018 9.975218 AGTTAGTACAAAATTGGGTCATCTATT 57.025 29.630 0.00 0.00 0.00 1.73
790 2026 9.289303 CAAAATTGGGTCATCTATTTTAGAACG 57.711 33.333 0.00 0.00 38.50 3.95
791 2027 8.801882 AAATTGGGTCATCTATTTTAGAACGA 57.198 30.769 0.00 0.00 38.50 3.85
792 2028 8.801882 AATTGGGTCATCTATTTTAGAACGAA 57.198 30.769 0.00 0.00 38.50 3.85
793 2029 7.843490 TTGGGTCATCTATTTTAGAACGAAG 57.157 36.000 0.00 0.00 38.50 3.79
794 2030 6.346096 TGGGTCATCTATTTTAGAACGAAGG 58.654 40.000 0.00 0.00 38.50 3.46
795 2031 5.758784 GGGTCATCTATTTTAGAACGAAGGG 59.241 44.000 0.00 0.00 38.50 3.95
796 2032 6.407752 GGGTCATCTATTTTAGAACGAAGGGA 60.408 42.308 0.00 0.00 38.50 4.20
797 2033 6.702282 GGTCATCTATTTTAGAACGAAGGGAG 59.298 42.308 0.00 0.00 38.50 4.30
798 2034 7.266400 GTCATCTATTTTAGAACGAAGGGAGT 58.734 38.462 0.00 0.00 38.50 3.85
799 2035 8.411683 GTCATCTATTTTAGAACGAAGGGAGTA 58.588 37.037 0.00 0.00 38.50 2.59
809 2045 0.883833 GAAGGGAGTACAACGGACGA 59.116 55.000 0.00 0.00 0.00 4.20
829 2065 3.796667 GTGGAAGACACTCTCGGTC 57.203 57.895 0.00 0.00 46.72 4.79
848 2084 1.226547 GCAGAGACCGCGAGAAGAG 60.227 63.158 8.23 0.00 0.00 2.85
929 2165 1.510414 CATGCGCACGTGTGACATG 60.510 57.895 31.98 31.98 38.97 3.21
949 2186 3.596214 TGTCTATCTCTTCCCGCAAAAC 58.404 45.455 0.00 0.00 0.00 2.43
974 2212 2.269023 AGACATGTCCATCTCCACCAA 58.731 47.619 22.21 0.00 0.00 3.67
1118 2358 1.244697 GGCGACACAGGAGTCTGAGA 61.245 60.000 0.00 0.00 43.49 3.27
1333 2573 2.664081 GGAGGACCAGGACCAGCAG 61.664 68.421 10.90 0.00 35.97 4.24
1625 2865 2.325082 GCCGCCGCCGATTAATGAT 61.325 57.895 0.00 0.00 36.29 2.45
1664 2904 0.962855 GCTGCTTGAAGGGAAGGACC 60.963 60.000 0.00 0.00 38.08 4.46
1816 3749 4.695396 TCCCATGTGCAATGAATAAATGC 58.305 39.130 9.56 0.00 40.45 3.56
1843 3776 6.003234 AGTACGTCTGATGTCTATACATGC 57.997 41.667 5.66 0.00 46.49 4.06
1854 3787 6.535963 TGTCTATACATGCCTATCCATCTG 57.464 41.667 0.00 0.00 0.00 2.90
1915 3862 0.752658 TGAGTGTGGAGTGTGGACTG 59.247 55.000 0.00 0.00 30.16 3.51
1937 3884 1.562575 CGACGGCAAGTACCAACACC 61.563 60.000 0.00 0.00 0.00 4.16
2064 4012 5.700832 TGTGTAAGGTCATGTTTCATCTCAC 59.299 40.000 0.00 0.00 0.00 3.51
2135 4085 3.885901 TCTCTCTCTCTCTCTCTCTCTCG 59.114 52.174 0.00 0.00 0.00 4.04
2154 4356 2.477375 TCGCTCGCTAAAACATTTCGTT 59.523 40.909 0.00 0.00 40.50 3.85
2177 4379 1.064825 GGGGAGTGGACCTTGAAAGA 58.935 55.000 0.00 0.00 0.00 2.52
2179 4381 1.003696 GGGAGTGGACCTTGAAAGAGG 59.996 57.143 0.00 0.00 42.75 3.69
2185 4387 1.066787 GGACCTTGAAAGAGGACCGAG 60.067 57.143 0.00 0.00 40.79 4.63
2186 4388 1.893801 GACCTTGAAAGAGGACCGAGA 59.106 52.381 0.00 0.00 39.25 4.04
2243 4445 1.402259 CCGCTAGGCCACTATCTATCG 59.598 57.143 5.01 0.00 0.00 2.92
2269 4471 8.529102 GTTTGTAAGAATCCAAAACTTTCGAAC 58.471 33.333 0.00 0.00 32.77 3.95
2277 4479 6.155475 TCCAAAACTTTCGAACCAAATGAT 57.845 33.333 0.00 0.00 0.00 2.45
2281 4483 5.514274 AACTTTCGAACCAAATGATGTGT 57.486 34.783 0.00 0.00 0.00 3.72
2330 4532 6.004574 ACAAGATTTGTTCCTCTACTTTCCC 58.995 40.000 0.00 0.00 42.22 3.97
2417 4622 5.735766 AGAAACACTCTCCTAGTTTATGCC 58.264 41.667 0.00 0.00 35.76 4.40
2450 4655 5.447478 TTGTTTGCAAAATGTTCAGAACG 57.553 34.783 14.67 0.00 0.00 3.95
2459 4828 7.655328 TGCAAAATGTTCAGAACGGATTATTTT 59.345 29.630 8.80 10.95 0.00 1.82
2503 4872 1.558233 CCTAAACTCCCTCTCACCGT 58.442 55.000 0.00 0.00 0.00 4.83
2505 4874 2.688958 CCTAAACTCCCTCTCACCGTAG 59.311 54.545 0.00 0.00 0.00 3.51
2513 4882 0.183014 CTCTCACCGTAGCTCCCCTA 59.817 60.000 0.00 0.00 0.00 3.53
2520 4889 2.521950 TAGCTCCCCTAGGCGCAG 60.522 66.667 10.83 0.00 46.95 5.18
2649 5028 5.450592 TCATTTGTTGTTTGCATGCTCTA 57.549 34.783 20.33 1.11 0.00 2.43
2675 5054 3.761218 CTCCTATATGTGGAGTGCGATCT 59.239 47.826 14.79 0.00 44.42 2.75
2698 5077 5.527951 TGCAATGTGATTGAGGTTGTTAAC 58.472 37.500 0.00 0.00 42.83 2.01
2747 5126 7.698836 TTTTGCAAGTTAAGAGCTTTCATTC 57.301 32.000 0.00 0.00 0.00 2.67
2748 5127 6.389830 TTGCAAGTTAAGAGCTTTCATTCA 57.610 33.333 0.00 0.00 0.00 2.57
2749 5128 6.579666 TGCAAGTTAAGAGCTTTCATTCAT 57.420 33.333 0.00 0.00 0.00 2.57
2750 5129 6.985117 TGCAAGTTAAGAGCTTTCATTCATT 58.015 32.000 0.00 0.00 0.00 2.57
2751 5130 8.109705 TGCAAGTTAAGAGCTTTCATTCATTA 57.890 30.769 0.00 0.00 0.00 1.90
2752 5131 8.575589 TGCAAGTTAAGAGCTTTCATTCATTAA 58.424 29.630 0.00 0.00 0.00 1.40
2753 5132 9.410556 GCAAGTTAAGAGCTTTCATTCATTAAA 57.589 29.630 0.00 0.00 0.00 1.52
2758 5137 7.858052 AAGAGCTTTCATTCATTAAACAACG 57.142 32.000 0.00 0.00 0.00 4.10
2759 5138 6.381801 AGAGCTTTCATTCATTAAACAACGG 58.618 36.000 0.00 0.00 0.00 4.44
2760 5139 5.469479 AGCTTTCATTCATTAAACAACGGG 58.531 37.500 0.00 0.00 0.00 5.28
2761 5140 4.625311 GCTTTCATTCATTAAACAACGGGG 59.375 41.667 0.00 0.00 0.00 5.73
2762 5141 5.778862 CTTTCATTCATTAAACAACGGGGT 58.221 37.500 0.00 0.00 0.00 4.95
2763 5142 5.793030 TTCATTCATTAAACAACGGGGTT 57.207 34.783 0.00 0.00 0.00 4.11
2764 5143 6.896021 TTCATTCATTAAACAACGGGGTTA 57.104 33.333 0.00 0.00 0.00 2.85
2765 5144 6.896021 TCATTCATTAAACAACGGGGTTAA 57.104 33.333 2.65 2.65 0.00 2.01
2766 5145 7.286215 TCATTCATTAAACAACGGGGTTAAA 57.714 32.000 4.08 0.00 0.00 1.52
2767 5146 7.723324 TCATTCATTAAACAACGGGGTTAAAA 58.277 30.769 4.08 0.00 0.00 1.52
2768 5147 8.368668 TCATTCATTAAACAACGGGGTTAAAAT 58.631 29.630 4.08 0.00 0.00 1.82
2769 5148 8.652463 CATTCATTAAACAACGGGGTTAAAATC 58.348 33.333 4.08 0.00 0.00 2.17
2770 5149 6.380190 TCATTAAACAACGGGGTTAAAATCG 58.620 36.000 4.08 0.00 0.00 3.34
2771 5150 5.764487 TTAAACAACGGGGTTAAAATCGT 57.236 34.783 0.00 0.00 37.45 3.73
2772 5151 4.652421 AAACAACGGGGTTAAAATCGTT 57.348 36.364 0.00 0.00 45.02 3.85
2773 5152 4.652421 AACAACGGGGTTAAAATCGTTT 57.348 36.364 7.82 0.00 42.77 3.60
2774 5153 5.764487 AACAACGGGGTTAAAATCGTTTA 57.236 34.783 7.82 0.00 42.77 2.01
2775 5154 5.361135 ACAACGGGGTTAAAATCGTTTAG 57.639 39.130 7.82 2.91 42.77 1.85
2776 5155 4.160594 CAACGGGGTTAAAATCGTTTAGC 58.839 43.478 7.82 0.00 42.77 3.09
2777 5156 3.410508 ACGGGGTTAAAATCGTTTAGCA 58.589 40.909 0.00 0.00 33.39 3.49
2778 5157 3.819902 ACGGGGTTAAAATCGTTTAGCAA 59.180 39.130 0.00 0.00 33.39 3.91
2779 5158 4.083164 ACGGGGTTAAAATCGTTTAGCAAG 60.083 41.667 0.00 0.00 33.39 4.01
2780 5159 4.171005 GGGGTTAAAATCGTTTAGCAAGC 58.829 43.478 0.00 0.00 33.39 4.01
2781 5160 4.321378 GGGGTTAAAATCGTTTAGCAAGCA 60.321 41.667 0.00 0.00 33.39 3.91
2782 5161 5.224135 GGGTTAAAATCGTTTAGCAAGCAA 58.776 37.500 0.00 0.00 33.39 3.91
2783 5162 5.344933 GGGTTAAAATCGTTTAGCAAGCAAG 59.655 40.000 0.00 0.00 33.39 4.01
2784 5163 6.146898 GGTTAAAATCGTTTAGCAAGCAAGA 58.853 36.000 0.00 0.00 33.39 3.02
2785 5164 6.305638 GGTTAAAATCGTTTAGCAAGCAAGAG 59.694 38.462 0.00 0.00 33.39 2.85
2786 5165 5.689383 AAAATCGTTTAGCAAGCAAGAGA 57.311 34.783 0.00 0.00 0.00 3.10
2787 5166 4.670227 AATCGTTTAGCAAGCAAGAGAC 57.330 40.909 0.00 0.00 0.00 3.36
2788 5167 3.386768 TCGTTTAGCAAGCAAGAGACT 57.613 42.857 0.00 0.00 0.00 3.24
2789 5168 4.514781 TCGTTTAGCAAGCAAGAGACTA 57.485 40.909 0.00 0.00 0.00 2.59
2790 5169 4.878439 TCGTTTAGCAAGCAAGAGACTAA 58.122 39.130 0.00 0.00 0.00 2.24
2791 5170 5.294356 TCGTTTAGCAAGCAAGAGACTAAA 58.706 37.500 0.00 0.00 32.07 1.85
2792 5171 5.756347 TCGTTTAGCAAGCAAGAGACTAAAA 59.244 36.000 0.00 0.00 35.31 1.52
2793 5172 6.259167 TCGTTTAGCAAGCAAGAGACTAAAAA 59.741 34.615 0.00 0.00 35.31 1.94
2794 5173 6.575201 CGTTTAGCAAGCAAGAGACTAAAAAG 59.425 38.462 0.00 0.00 35.31 2.27
2795 5174 4.495911 AGCAAGCAAGAGACTAAAAAGC 57.504 40.909 0.00 0.00 0.00 3.51
2796 5175 4.140536 AGCAAGCAAGAGACTAAAAAGCT 58.859 39.130 0.00 0.00 0.00 3.74
2797 5176 5.308825 AGCAAGCAAGAGACTAAAAAGCTA 58.691 37.500 0.00 0.00 0.00 3.32
2798 5177 5.411053 AGCAAGCAAGAGACTAAAAAGCTAG 59.589 40.000 0.00 0.00 0.00 3.42
2799 5178 5.391416 GCAAGCAAGAGACTAAAAAGCTAGG 60.391 44.000 0.00 0.00 0.00 3.02
2800 5179 5.491323 AGCAAGAGACTAAAAAGCTAGGT 57.509 39.130 0.00 0.00 0.00 3.08
2801 5180 6.607004 AGCAAGAGACTAAAAAGCTAGGTA 57.393 37.500 0.00 0.00 0.00 3.08
2802 5181 6.399743 AGCAAGAGACTAAAAAGCTAGGTAC 58.600 40.000 0.00 0.00 0.00 3.34
2803 5182 6.014499 AGCAAGAGACTAAAAAGCTAGGTACA 60.014 38.462 0.00 0.00 0.00 2.90
2804 5183 6.819146 GCAAGAGACTAAAAAGCTAGGTACAT 59.181 38.462 0.00 0.00 0.00 2.29
2805 5184 7.201565 GCAAGAGACTAAAAAGCTAGGTACATG 60.202 40.741 0.00 0.00 0.00 3.21
2806 5185 7.719871 AGAGACTAAAAAGCTAGGTACATGA 57.280 36.000 0.00 0.00 0.00 3.07
2807 5186 8.312669 AGAGACTAAAAAGCTAGGTACATGAT 57.687 34.615 0.00 0.00 0.00 2.45
2808 5187 8.763601 AGAGACTAAAAAGCTAGGTACATGATT 58.236 33.333 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 1.071605 CCTGCTACGACAAGACAAGC 58.928 55.000 0.00 0.00 0.00 4.01
107 108 0.672401 CCCAAGCAACGTATCACGGT 60.672 55.000 3.54 0.00 45.77 4.83
110 111 1.338769 ACCTCCCAAGCAACGTATCAC 60.339 52.381 0.00 0.00 0.00 3.06
157 1355 2.363975 GGTGAGGGCGTGGGTGATA 61.364 63.158 0.00 0.00 0.00 2.15
204 1404 1.595794 GTGGTGTGTGACAACCTAACG 59.404 52.381 14.75 0.00 34.14 3.18
218 1418 3.646715 CATGGTCCCCGGTGGTGT 61.647 66.667 0.00 0.00 34.77 4.16
227 1427 1.228367 CTAGGCATGGCATGGTCCC 60.228 63.158 27.48 19.81 0.00 4.46
228 1428 0.250640 CTCTAGGCATGGCATGGTCC 60.251 60.000 27.48 20.49 0.00 4.46
253 1453 0.460311 CCTAAGTCTACGGCAGTGGG 59.540 60.000 0.00 0.00 0.00 4.61
256 1456 2.510928 ACTCCTAAGTCTACGGCAGT 57.489 50.000 0.00 0.00 0.00 4.40
258 1458 3.539604 GACTACTCCTAAGTCTACGGCA 58.460 50.000 0.00 0.00 40.21 5.69
268 1468 3.726557 TCCCACGAAGACTACTCCTAA 57.273 47.619 0.00 0.00 0.00 2.69
284 1484 3.494254 ACCAACGGCCTGTTCCCA 61.494 61.111 9.57 0.00 39.29 4.37
290 1490 3.783362 TTGTCCCACCAACGGCCTG 62.783 63.158 0.00 0.00 0.00 4.85
291 1491 2.764637 GATTGTCCCACCAACGGCCT 62.765 60.000 0.00 0.00 0.00 5.19
317 1517 2.224646 ACCAAGAGAAAGCCTCACCTTC 60.225 50.000 0.00 0.00 44.40 3.46
318 1518 1.777272 ACCAAGAGAAAGCCTCACCTT 59.223 47.619 0.00 0.00 44.40 3.50
319 1519 1.439543 ACCAAGAGAAAGCCTCACCT 58.560 50.000 0.00 0.00 44.40 4.00
333 1561 3.420893 TGTCAAGGCCAAGATTACCAAG 58.579 45.455 5.01 0.00 0.00 3.61
369 1598 6.157645 ACCATCATCTTTGAGTATGAGTCCTT 59.842 38.462 0.00 0.00 35.67 3.36
377 1606 5.128919 GGCAAGACCATCATCTTTGAGTAT 58.871 41.667 0.00 0.00 36.78 2.12
378 1607 4.019411 TGGCAAGACCATCATCTTTGAGTA 60.019 41.667 0.00 0.00 46.36 2.59
379 1608 3.245016 TGGCAAGACCATCATCTTTGAGT 60.245 43.478 0.00 0.00 46.36 3.41
406 1635 5.927030 TGATGTAGATTTTTGCGAAGACAC 58.073 37.500 0.00 0.00 0.00 3.67
461 1691 2.258726 GCCTCCCAACAACGTGGTC 61.259 63.158 0.00 0.00 36.90 4.02
463 1693 3.353836 CGCCTCCCAACAACGTGG 61.354 66.667 0.00 0.00 38.51 4.94
465 1695 3.530910 CTCCGCCTCCCAACAACGT 62.531 63.158 0.00 0.00 0.00 3.99
467 1697 1.966451 CACTCCGCCTCCCAACAAC 60.966 63.158 0.00 0.00 0.00 3.32
472 1702 2.815684 ATACCACACTCCGCCTCCCA 62.816 60.000 0.00 0.00 0.00 4.37
504 1734 2.164422 GCCCTTGGCTGACTACAAAATC 59.836 50.000 0.00 0.00 46.69 2.17
524 1754 2.772691 GCAGCTTGAGGATGGCAGC 61.773 63.158 0.00 0.00 0.00 5.25
525 1755 0.680280 AAGCAGCTTGAGGATGGCAG 60.680 55.000 6.93 0.00 0.00 4.85
528 1758 1.093159 GACAAGCAGCTTGAGGATGG 58.907 55.000 36.69 12.93 43.42 3.51
551 1781 1.271597 GGAAGATGTTGGCACCTCTGT 60.272 52.381 0.00 0.00 29.03 3.41
638 1868 3.666274 TGCCAAGCAATCCTCAAAAATG 58.334 40.909 0.00 0.00 34.76 2.32
639 1869 4.020039 TGATGCCAAGCAATCCTCAAAAAT 60.020 37.500 0.00 0.00 43.62 1.82
641 1871 2.898612 TGATGCCAAGCAATCCTCAAAA 59.101 40.909 0.00 0.00 43.62 2.44
642 1872 2.527497 TGATGCCAAGCAATCCTCAAA 58.473 42.857 0.00 0.00 43.62 2.69
643 1873 2.219080 TGATGCCAAGCAATCCTCAA 57.781 45.000 0.00 0.00 43.62 3.02
644 1874 2.304092 GATGATGCCAAGCAATCCTCA 58.696 47.619 0.00 0.00 43.62 3.86
645 1875 1.612463 GGATGATGCCAAGCAATCCTC 59.388 52.381 11.40 5.08 43.62 3.71
646 1876 1.700955 GGATGATGCCAAGCAATCCT 58.299 50.000 11.40 0.00 43.62 3.24
653 1889 1.233019 CTTAGCGGGATGATGCCAAG 58.767 55.000 3.30 0.00 0.00 3.61
657 1893 0.590195 CTTGCTTAGCGGGATGATGC 59.410 55.000 0.00 0.00 0.00 3.91
659 1895 1.202698 GGTCTTGCTTAGCGGGATGAT 60.203 52.381 0.00 0.00 0.00 2.45
660 1896 0.178068 GGTCTTGCTTAGCGGGATGA 59.822 55.000 0.00 0.00 0.00 2.92
686 1922 0.179084 CGGGGATGTCAAGTATGCGT 60.179 55.000 0.00 0.00 0.00 5.24
688 1924 1.299541 CACGGGGATGTCAAGTATGC 58.700 55.000 0.00 0.00 0.00 3.14
701 1937 4.029809 GACAAGGGTCCCACGGGG 62.030 72.222 11.55 0.00 46.11 5.73
702 1938 2.465055 GAAGACAAGGGTCCCACGGG 62.465 65.000 11.55 0.00 45.48 5.28
747 1983 9.280174 CCCAATTTTGTACTAACTTTACTGAGA 57.720 33.333 0.00 0.00 0.00 3.27
752 1988 9.836076 GATGACCCAATTTTGTACTAACTTTAC 57.164 33.333 0.00 0.00 0.00 2.01
753 1989 9.802039 AGATGACCCAATTTTGTACTAACTTTA 57.198 29.630 0.00 0.00 0.00 1.85
754 1990 8.706322 AGATGACCCAATTTTGTACTAACTTT 57.294 30.769 0.00 0.00 0.00 2.66
755 1991 9.975218 ATAGATGACCCAATTTTGTACTAACTT 57.025 29.630 0.00 0.00 0.00 2.66
756 1992 9.975218 AATAGATGACCCAATTTTGTACTAACT 57.025 29.630 0.00 0.00 0.00 2.24
764 2000 9.289303 CGTTCTAAAATAGATGACCCAATTTTG 57.711 33.333 0.00 0.00 34.37 2.44
765 2001 9.238368 TCGTTCTAAAATAGATGACCCAATTTT 57.762 29.630 0.00 0.00 36.04 1.82
766 2002 8.801882 TCGTTCTAAAATAGATGACCCAATTT 57.198 30.769 0.00 0.00 34.22 1.82
767 2003 8.801882 TTCGTTCTAAAATAGATGACCCAATT 57.198 30.769 0.00 0.00 34.22 2.32
768 2004 7.499232 CCTTCGTTCTAAAATAGATGACCCAAT 59.501 37.037 0.00 0.00 34.22 3.16
769 2005 6.821665 CCTTCGTTCTAAAATAGATGACCCAA 59.178 38.462 0.00 0.00 34.22 4.12
770 2006 6.346096 CCTTCGTTCTAAAATAGATGACCCA 58.654 40.000 0.00 0.00 34.22 4.51
771 2007 5.758784 CCCTTCGTTCTAAAATAGATGACCC 59.241 44.000 0.00 0.00 34.22 4.46
772 2008 6.579865 TCCCTTCGTTCTAAAATAGATGACC 58.420 40.000 0.00 0.00 34.22 4.02
773 2009 7.266400 ACTCCCTTCGTTCTAAAATAGATGAC 58.734 38.462 0.00 0.00 34.22 3.06
774 2010 7.419711 ACTCCCTTCGTTCTAAAATAGATGA 57.580 36.000 0.00 0.00 34.22 2.92
775 2011 8.195436 TGTACTCCCTTCGTTCTAAAATAGATG 58.805 37.037 0.00 0.00 34.22 2.90
776 2012 8.302515 TGTACTCCCTTCGTTCTAAAATAGAT 57.697 34.615 0.00 0.00 34.22 1.98
777 2013 7.707624 TGTACTCCCTTCGTTCTAAAATAGA 57.292 36.000 0.00 0.00 0.00 1.98
778 2014 7.008992 CGTTGTACTCCCTTCGTTCTAAAATAG 59.991 40.741 0.00 0.00 0.00 1.73
779 2015 6.808212 CGTTGTACTCCCTTCGTTCTAAAATA 59.192 38.462 0.00 0.00 0.00 1.40
780 2016 5.636543 CGTTGTACTCCCTTCGTTCTAAAAT 59.363 40.000 0.00 0.00 0.00 1.82
781 2017 4.984161 CGTTGTACTCCCTTCGTTCTAAAA 59.016 41.667 0.00 0.00 0.00 1.52
782 2018 4.549458 CGTTGTACTCCCTTCGTTCTAAA 58.451 43.478 0.00 0.00 0.00 1.85
783 2019 3.057315 CCGTTGTACTCCCTTCGTTCTAA 60.057 47.826 0.00 0.00 0.00 2.10
784 2020 2.489329 CCGTTGTACTCCCTTCGTTCTA 59.511 50.000 0.00 0.00 0.00 2.10
785 2021 1.271656 CCGTTGTACTCCCTTCGTTCT 59.728 52.381 0.00 0.00 0.00 3.01
786 2022 1.270550 TCCGTTGTACTCCCTTCGTTC 59.729 52.381 0.00 0.00 0.00 3.95
787 2023 1.000171 GTCCGTTGTACTCCCTTCGTT 60.000 52.381 0.00 0.00 0.00 3.85
788 2024 0.600057 GTCCGTTGTACTCCCTTCGT 59.400 55.000 0.00 0.00 0.00 3.85
789 2025 0.455633 CGTCCGTTGTACTCCCTTCG 60.456 60.000 0.00 0.00 0.00 3.79
790 2026 0.883833 TCGTCCGTTGTACTCCCTTC 59.116 55.000 0.00 0.00 0.00 3.46
791 2027 0.600057 GTCGTCCGTTGTACTCCCTT 59.400 55.000 0.00 0.00 0.00 3.95
792 2028 1.580845 CGTCGTCCGTTGTACTCCCT 61.581 60.000 0.00 0.00 0.00 4.20
793 2029 1.154150 CGTCGTCCGTTGTACTCCC 60.154 63.158 0.00 0.00 0.00 4.30
794 2030 4.447365 CGTCGTCCGTTGTACTCC 57.553 61.111 0.00 0.00 0.00 3.85
838 2074 1.726533 GGAGTACCCCTCTTCTCGCG 61.727 65.000 0.00 0.00 40.30 5.87
841 2077 1.116308 GCTGGAGTACCCCTCTTCTC 58.884 60.000 0.00 0.00 40.30 2.87
844 2080 2.942604 TTAGCTGGAGTACCCCTCTT 57.057 50.000 0.00 0.00 40.30 2.85
848 2084 3.261137 GTGGATATTAGCTGGAGTACCCC 59.739 52.174 0.00 0.00 34.81 4.95
929 2165 3.596214 TGTTTTGCGGGAAGAGATAGAC 58.404 45.455 0.00 0.00 0.00 2.59
949 2186 4.082571 GGTGGAGATGGACATGTCTTTTTG 60.083 45.833 24.50 0.00 32.31 2.44
974 2212 2.042831 GCGTGGGAGCAGCAATCTT 61.043 57.895 0.00 0.00 37.05 2.40
1118 2358 3.988678 ACCCTGCCATGCCTGCTT 61.989 61.111 0.00 0.00 0.00 3.91
1664 2904 9.769093 AATTACTTATTAGCTTTTGTTACGCTG 57.231 29.630 0.00 0.00 35.33 5.18
1696 2936 6.151648 TCCATTTCCATCTTGTTTCATCTCAC 59.848 38.462 0.00 0.00 0.00 3.51
1816 3749 9.548208 CATGTATAGACATCAGACGTACTAATG 57.452 37.037 0.00 0.00 44.82 1.90
1843 3776 5.734720 ACACTAAACACACAGATGGATAGG 58.265 41.667 0.00 0.00 0.00 2.57
1854 3787 9.777575 AATTGTAGTTTTGTACACTAAACACAC 57.222 29.630 20.04 17.11 41.65 3.82
1915 3862 1.005867 TTGGTACTTGCCGTCGTCC 60.006 57.895 0.00 0.00 0.00 4.79
1937 3884 1.189446 GTAGAAGCACAACACGACGTG 59.811 52.381 25.72 25.72 39.75 4.49
1948 3895 2.470286 GCACGCGTGTAGAAGCAC 59.530 61.111 36.80 16.46 36.12 4.40
2064 4012 0.997932 AGAGTCGTACACTACTCGCG 59.002 55.000 0.00 0.00 45.47 5.87
2135 4085 3.805823 TCAACGAAATGTTTTAGCGAGC 58.194 40.909 0.00 0.00 39.29 5.03
2154 4356 0.178876 TCAAGGTCCACTCCCCATCA 60.179 55.000 0.00 0.00 0.00 3.07
2177 4379 3.235200 CAAGGGAATAGATCTCGGTCCT 58.765 50.000 15.33 9.48 31.91 3.85
2179 4381 3.637229 TGACAAGGGAATAGATCTCGGTC 59.363 47.826 0.00 0.00 37.88 4.79
2185 4387 3.817647 GGCACATGACAAGGGAATAGATC 59.182 47.826 0.00 0.00 0.00 2.75
2186 4388 3.202818 TGGCACATGACAAGGGAATAGAT 59.797 43.478 0.00 0.00 0.00 1.98
2243 4445 8.529102 GTTCGAAAGTTTTGGATTCTTACAAAC 58.471 33.333 0.00 0.00 36.42 2.93
2269 4471 3.684908 TGTGGACCTACACATCATTTGG 58.315 45.455 0.00 0.00 45.70 3.28
2281 4483 3.858135 ACTTCTCTCCTTTGTGGACCTA 58.142 45.455 0.00 0.00 40.56 3.08
2330 4532 6.624423 AGCAAATGTTTTCTATGGTTGCTAG 58.376 36.000 6.22 0.00 46.07 3.42
2365 4570 6.916360 TTGGAATCAACCAAGAAGCTAAAT 57.084 33.333 0.00 0.00 43.79 1.40
2437 4642 9.927668 ATTCAAAATAATCCGTTCTGAACATTT 57.072 25.926 19.56 13.62 0.00 2.32
2568 4937 2.281345 GGAGGATGGATGGCGCTG 60.281 66.667 7.64 0.00 0.00 5.18
2579 4948 2.409948 CGCAGGAGAAAAAGGAGGAT 57.590 50.000 0.00 0.00 0.00 3.24
2670 5049 2.941064 ACCTCAATCACATTGCAGATCG 59.059 45.455 0.00 0.00 40.05 3.69
2675 5054 5.068329 TGTTAACAACCTCAATCACATTGCA 59.932 36.000 5.64 0.00 40.05 4.08
2688 5067 6.249951 TGCCCTGTTATTATGTTAACAACCT 58.750 36.000 13.23 0.00 40.53 3.50
2727 5106 8.970691 TTAATGAATGAAAGCTCTTAACTTGC 57.029 30.769 0.00 0.00 0.00 4.01
2746 5125 6.016443 ACGATTTTAACCCCGTTGTTTAATGA 60.016 34.615 0.00 0.00 30.41 2.57
2747 5126 6.151004 ACGATTTTAACCCCGTTGTTTAATG 58.849 36.000 0.00 0.00 30.41 1.90
2748 5127 6.330004 ACGATTTTAACCCCGTTGTTTAAT 57.670 33.333 0.00 0.00 30.41 1.40
2749 5128 5.764487 ACGATTTTAACCCCGTTGTTTAA 57.236 34.783 0.00 0.00 30.41 1.52
2750 5129 5.764487 AACGATTTTAACCCCGTTGTTTA 57.236 34.783 0.00 0.00 42.61 2.01
2751 5130 4.652421 AACGATTTTAACCCCGTTGTTT 57.348 36.364 0.00 0.00 42.61 2.83
2752 5131 4.652421 AAACGATTTTAACCCCGTTGTT 57.348 36.364 0.00 0.00 43.28 2.83
2753 5132 4.320421 GCTAAACGATTTTAACCCCGTTGT 60.320 41.667 0.00 0.00 43.28 3.32
2754 5133 4.160594 GCTAAACGATTTTAACCCCGTTG 58.839 43.478 0.00 0.00 43.28 4.10
2755 5134 3.819902 TGCTAAACGATTTTAACCCCGTT 59.180 39.130 0.00 0.00 45.56 4.44
2756 5135 3.410508 TGCTAAACGATTTTAACCCCGT 58.589 40.909 0.00 0.00 36.77 5.28
2757 5136 4.408694 CTTGCTAAACGATTTTAACCCCG 58.591 43.478 0.00 0.00 0.00 5.73
2758 5137 4.171005 GCTTGCTAAACGATTTTAACCCC 58.829 43.478 0.00 0.00 0.00 4.95
2759 5138 4.800784 TGCTTGCTAAACGATTTTAACCC 58.199 39.130 0.00 0.00 0.00 4.11
2760 5139 6.146898 TCTTGCTTGCTAAACGATTTTAACC 58.853 36.000 0.00 0.00 0.00 2.85
2761 5140 7.059602 GTCTCTTGCTTGCTAAACGATTTTAAC 59.940 37.037 0.00 0.00 0.00 2.01
2762 5141 7.041372 AGTCTCTTGCTTGCTAAACGATTTTAA 60.041 33.333 0.00 0.00 0.00 1.52
2763 5142 6.426937 AGTCTCTTGCTTGCTAAACGATTTTA 59.573 34.615 0.00 0.00 0.00 1.52
2764 5143 5.239525 AGTCTCTTGCTTGCTAAACGATTTT 59.760 36.000 0.00 0.00 0.00 1.82
2765 5144 4.757149 AGTCTCTTGCTTGCTAAACGATTT 59.243 37.500 0.00 0.00 0.00 2.17
2766 5145 4.319177 AGTCTCTTGCTTGCTAAACGATT 58.681 39.130 0.00 0.00 0.00 3.34
2767 5146 3.931578 AGTCTCTTGCTTGCTAAACGAT 58.068 40.909 0.00 0.00 0.00 3.73
2768 5147 3.386768 AGTCTCTTGCTTGCTAAACGA 57.613 42.857 0.00 0.00 0.00 3.85
2769 5148 5.591643 TTTAGTCTCTTGCTTGCTAAACG 57.408 39.130 0.00 0.00 29.87 3.60
2770 5149 6.360947 GCTTTTTAGTCTCTTGCTTGCTAAAC 59.639 38.462 0.00 0.00 33.20 2.01
2771 5150 6.263168 AGCTTTTTAGTCTCTTGCTTGCTAAA 59.737 34.615 0.00 0.00 32.07 1.85
2772 5151 5.765182 AGCTTTTTAGTCTCTTGCTTGCTAA 59.235 36.000 0.00 0.00 0.00 3.09
2773 5152 5.308825 AGCTTTTTAGTCTCTTGCTTGCTA 58.691 37.500 0.00 0.00 0.00 3.49
2774 5153 4.140536 AGCTTTTTAGTCTCTTGCTTGCT 58.859 39.130 0.00 0.00 0.00 3.91
2775 5154 4.495911 AGCTTTTTAGTCTCTTGCTTGC 57.504 40.909 0.00 0.00 0.00 4.01
2776 5155 5.703130 ACCTAGCTTTTTAGTCTCTTGCTTG 59.297 40.000 0.00 0.00 0.00 4.01
2777 5156 5.870706 ACCTAGCTTTTTAGTCTCTTGCTT 58.129 37.500 0.00 0.00 0.00 3.91
2778 5157 5.491323 ACCTAGCTTTTTAGTCTCTTGCT 57.509 39.130 0.00 0.00 0.00 3.91
2779 5158 6.164176 TGTACCTAGCTTTTTAGTCTCTTGC 58.836 40.000 0.00 0.00 0.00 4.01
2780 5159 8.035394 TCATGTACCTAGCTTTTTAGTCTCTTG 58.965 37.037 0.00 0.00 0.00 3.02
2781 5160 8.135382 TCATGTACCTAGCTTTTTAGTCTCTT 57.865 34.615 0.00 0.00 0.00 2.85
2782 5161 7.719871 TCATGTACCTAGCTTTTTAGTCTCT 57.280 36.000 0.00 0.00 0.00 3.10
2783 5162 8.950208 AATCATGTACCTAGCTTTTTAGTCTC 57.050 34.615 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.