Multiple sequence alignment - TraesCS1D01G127300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G127300 chr1D 100.000 2720 0 0 1 2720 139906703 139903984 0.000000e+00 5024.0
1 TraesCS1D01G127300 chr1D 93.125 160 9 2 483 641 87217905 87218063 1.630000e-57 233.0
2 TraesCS1D01G127300 chr1D 98.649 74 0 1 641 714 26144684 26144756 2.200000e-26 130.0
3 TraesCS1D01G127300 chr1D 96.104 77 2 1 641 717 338932940 338932865 1.020000e-24 124.0
4 TraesCS1D01G127300 chr1A 93.884 1357 46 16 714 2045 151351327 151352671 0.000000e+00 2012.0
5 TraesCS1D01G127300 chr1A 84.726 347 36 13 2120 2463 151358006 151358338 5.610000e-87 331.0
6 TraesCS1D01G127300 chr1B 94.846 1300 33 12 761 2045 198759040 198760320 0.000000e+00 1999.0
7 TraesCS1D01G127300 chr7A 89.474 380 33 5 6 381 121219012 121218636 8.810000e-130 473.0
8 TraesCS1D01G127300 chr7A 87.255 408 43 9 4 405 116757458 116757054 8.880000e-125 457.0
9 TraesCS1D01G127300 chr7A 73.538 359 72 12 2087 2440 138181569 138181229 6.150000e-22 115.0
10 TraesCS1D01G127300 chr5D 86.616 396 37 12 15 406 14597534 14597151 9.000000e-115 424.0
11 TraesCS1D01G127300 chr5D 73.145 674 120 37 2093 2720 540244667 540244009 4.630000e-43 185.0
12 TraesCS1D01G127300 chr5D 85.088 114 14 3 2607 2720 326908452 326908342 2.210000e-21 113.0
13 TraesCS1D01G127300 chr3D 84.169 379 35 12 3 379 611380239 611379884 7.210000e-91 344.0
14 TraesCS1D01G127300 chr3D 97.403 77 1 1 641 717 282756885 282756810 2.200000e-26 130.0
15 TraesCS1D01G127300 chr6D 81.728 405 36 15 7 406 435848978 435848607 1.220000e-78 303.0
16 TraesCS1D01G127300 chr6D 83.000 200 26 8 3 200 801118 800925 1.000000e-39 174.0
17 TraesCS1D01G127300 chr6D 97.260 73 1 1 641 713 342932175 342932246 3.680000e-24 122.0
18 TraesCS1D01G127300 chr6D 75.092 273 48 14 2464 2720 129700704 129700436 2.860000e-20 110.0
19 TraesCS1D01G127300 chr4D 86.147 231 25 4 490 714 356265875 356265646 2.710000e-60 243.0
20 TraesCS1D01G127300 chr4D 93.082 159 10 1 483 641 149659845 149660002 5.860000e-57 231.0
21 TraesCS1D01G127300 chr7D 93.711 159 9 1 483 641 170973021 170973178 1.260000e-58 237.0
22 TraesCS1D01G127300 chr7D 93.902 82 4 1 641 722 547880629 547880709 3.680000e-24 122.0
23 TraesCS1D01G127300 chr7D 91.304 69 6 0 2644 2712 17236871 17236803 8.020000e-16 95.3
24 TraesCS1D01G127300 chr2A 85.062 241 24 9 483 714 742051718 742051481 4.530000e-58 235.0
25 TraesCS1D01G127300 chr2A 93.082 159 10 1 483 641 455343886 455343729 5.860000e-57 231.0
26 TraesCS1D01G127300 chr7B 93.082 159 10 1 483 641 350803958 350804115 5.860000e-57 231.0
27 TraesCS1D01G127300 chr7B 73.529 680 108 40 2088 2720 103581138 103580484 2.760000e-45 193.0
28 TraesCS1D01G127300 chr7B 83.582 201 23 9 6 203 64065352 64065545 2.150000e-41 180.0
29 TraesCS1D01G127300 chr7B 81.604 212 29 10 4 209 609174225 609174432 1.680000e-37 167.0
30 TraesCS1D01G127300 chr4A 93.082 159 10 1 483 641 575178494 575178651 5.860000e-57 231.0
31 TraesCS1D01G127300 chr4A 97.368 76 1 1 641 716 458519078 458519152 7.910000e-26 128.0
32 TraesCS1D01G127300 chr2D 93.082 159 10 1 483 641 469115002 469115159 5.860000e-57 231.0
33 TraesCS1D01G127300 chr3A 74.118 680 111 43 2089 2720 741740562 741739900 1.270000e-53 220.0
34 TraesCS1D01G127300 chr6B 81.951 205 32 5 3 203 125646611 125646408 4.660000e-38 169.0
35 TraesCS1D01G127300 chr6B 80.734 109 19 2 2612 2720 279908616 279908722 1.740000e-12 84.2
36 TraesCS1D01G127300 chr3B 92.771 83 5 1 641 723 322514504 322514423 4.760000e-23 119.0
37 TraesCS1D01G127300 chr3B 97.059 34 0 1 2119 2151 505022350 505022383 3.780000e-04 56.5
38 TraesCS1D01G127300 chr4B 77.670 206 34 6 2090 2294 617406652 617406846 6.150000e-22 115.0
39 TraesCS1D01G127300 chr5B 83.929 112 15 3 2609 2720 379672828 379672720 1.330000e-18 104.0
40 TraesCS1D01G127300 chr5A 77.914 163 23 11 559 717 294255014 294255167 3.730000e-14 89.8
41 TraesCS1D01G127300 chr6A 80.808 99 19 0 2622 2720 211898596 211898498 8.070000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G127300 chr1D 139903984 139906703 2719 True 5024 5024 100.000 1 2720 1 chr1D.!!$R1 2719
1 TraesCS1D01G127300 chr1A 151351327 151352671 1344 False 2012 2012 93.884 714 2045 1 chr1A.!!$F1 1331
2 TraesCS1D01G127300 chr1B 198759040 198760320 1280 False 1999 1999 94.846 761 2045 1 chr1B.!!$F1 1284
3 TraesCS1D01G127300 chr3A 741739900 741740562 662 True 220 220 74.118 2089 2720 1 chr3A.!!$R1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 423 0.036199 ATAGGCGCCGGTTTGTAACA 60.036 50.0 23.2 0.0 0.0 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2226 2255 0.170339 GCGGGCTGTTTTACATCACC 59.83 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 9.241919 TCCATATACATGTTCAACATTTTGAGT 57.758 29.630 2.30 0.00 42.79 3.41
173 174 7.969536 TCAACATTTTTCAAAACCTTGTTCA 57.030 28.000 3.24 0.00 30.49 3.18
174 175 8.383318 TCAACATTTTTCAAAACCTTGTTCAA 57.617 26.923 3.24 0.00 30.49 2.69
175 176 8.286097 TCAACATTTTTCAAAACCTTGTTCAAC 58.714 29.630 3.24 0.00 30.49 3.18
176 177 7.736447 ACATTTTTCAAAACCTTGTTCAACA 57.264 28.000 0.00 0.00 33.94 3.33
177 178 8.334263 ACATTTTTCAAAACCTTGTTCAACAT 57.666 26.923 0.00 0.00 33.94 2.71
178 179 8.791675 ACATTTTTCAAAACCTTGTTCAACATT 58.208 25.926 0.00 0.00 33.94 2.71
179 180 9.623350 CATTTTTCAAAACCTTGTTCAACATTT 57.377 25.926 0.00 0.00 33.94 2.32
223 224 7.986085 TTTTTCAAATGTTGTTTTTGGGAGA 57.014 28.000 0.00 0.00 35.31 3.71
224 225 7.986085 TTTTCAAATGTTGTTTTTGGGAGAA 57.014 28.000 0.00 0.00 35.31 2.87
225 226 8.572855 TTTTCAAATGTTGTTTTTGGGAGAAT 57.427 26.923 0.00 0.00 35.31 2.40
226 227 7.551035 TTCAAATGTTGTTTTTGGGAGAATG 57.449 32.000 0.00 0.00 35.31 2.67
227 228 6.648192 TCAAATGTTGTTTTTGGGAGAATGT 58.352 32.000 0.00 0.00 35.31 2.71
228 229 7.108847 TCAAATGTTGTTTTTGGGAGAATGTT 58.891 30.769 0.00 0.00 35.31 2.71
229 230 7.609532 TCAAATGTTGTTTTTGGGAGAATGTTT 59.390 29.630 0.00 0.00 35.31 2.83
230 231 7.936496 AATGTTGTTTTTGGGAGAATGTTTT 57.064 28.000 0.00 0.00 0.00 2.43
231 232 7.936496 ATGTTGTTTTTGGGAGAATGTTTTT 57.064 28.000 0.00 0.00 0.00 1.94
232 233 7.138692 TGTTGTTTTTGGGAGAATGTTTTTG 57.861 32.000 0.00 0.00 0.00 2.44
233 234 6.712547 TGTTGTTTTTGGGAGAATGTTTTTGT 59.287 30.769 0.00 0.00 0.00 2.83
234 235 7.878127 TGTTGTTTTTGGGAGAATGTTTTTGTA 59.122 29.630 0.00 0.00 0.00 2.41
235 236 8.722394 GTTGTTTTTGGGAGAATGTTTTTGTAA 58.278 29.630 0.00 0.00 0.00 2.41
236 237 9.454859 TTGTTTTTGGGAGAATGTTTTTGTAAT 57.545 25.926 0.00 0.00 0.00 1.89
323 324 4.753516 AAAAAGGGAAACAGGAAACAGG 57.246 40.909 0.00 0.00 0.00 4.00
324 325 1.704641 AAGGGAAACAGGAAACAGGC 58.295 50.000 0.00 0.00 0.00 4.85
325 326 0.555769 AGGGAAACAGGAAACAGGCA 59.444 50.000 0.00 0.00 0.00 4.75
326 327 0.961753 GGGAAACAGGAAACAGGCAG 59.038 55.000 0.00 0.00 0.00 4.85
327 328 0.961753 GGAAACAGGAAACAGGCAGG 59.038 55.000 0.00 0.00 0.00 4.85
328 329 0.961753 GAAACAGGAAACAGGCAGGG 59.038 55.000 0.00 0.00 0.00 4.45
329 330 1.115326 AAACAGGAAACAGGCAGGGC 61.115 55.000 0.00 0.00 0.00 5.19
330 331 2.011617 AACAGGAAACAGGCAGGGCT 62.012 55.000 0.00 0.00 0.00 5.19
331 332 1.228675 CAGGAAACAGGCAGGGCTT 60.229 57.895 0.00 0.00 0.00 4.35
332 333 0.038166 CAGGAAACAGGCAGGGCTTA 59.962 55.000 0.00 0.00 0.00 3.09
333 334 0.038310 AGGAAACAGGCAGGGCTTAC 59.962 55.000 0.00 0.00 0.00 2.34
334 335 0.965866 GGAAACAGGCAGGGCTTACC 60.966 60.000 0.00 0.00 40.67 2.85
362 363 3.942439 GGCCGGCCCATACTCTCC 61.942 72.222 36.64 5.01 0.00 3.71
363 364 3.942439 GCCGGCCCATACTCTCCC 61.942 72.222 18.11 0.00 0.00 4.30
364 365 2.122813 CCGGCCCATACTCTCCCT 60.123 66.667 0.00 0.00 0.00 4.20
365 366 2.511452 CCGGCCCATACTCTCCCTG 61.511 68.421 0.00 0.00 0.00 4.45
366 367 2.511452 CGGCCCATACTCTCCCTGG 61.511 68.421 0.00 0.00 0.00 4.45
367 368 2.823758 GGCCCATACTCTCCCTGGC 61.824 68.421 0.00 0.00 38.16 4.85
368 369 1.768077 GCCCATACTCTCCCTGGCT 60.768 63.158 0.00 0.00 35.99 4.75
369 370 1.348775 GCCCATACTCTCCCTGGCTT 61.349 60.000 0.00 0.00 35.99 4.35
370 371 0.761802 CCCATACTCTCCCTGGCTTC 59.238 60.000 0.00 0.00 0.00 3.86
371 372 1.500474 CCATACTCTCCCTGGCTTCA 58.500 55.000 0.00 0.00 0.00 3.02
372 373 1.415659 CCATACTCTCCCTGGCTTCAG 59.584 57.143 0.00 0.00 38.21 3.02
373 374 2.114616 CATACTCTCCCTGGCTTCAGT 58.885 52.381 0.00 0.00 36.81 3.41
374 375 1.561643 TACTCTCCCTGGCTTCAGTG 58.438 55.000 0.00 0.00 36.81 3.66
375 376 0.178921 ACTCTCCCTGGCTTCAGTGA 60.179 55.000 0.00 0.00 36.81 3.41
376 377 0.536260 CTCTCCCTGGCTTCAGTGAG 59.464 60.000 0.00 0.52 42.08 3.51
377 378 0.178921 TCTCCCTGGCTTCAGTGAGT 60.179 55.000 5.95 0.00 41.64 3.41
378 379 0.248843 CTCCCTGGCTTCAGTGAGTC 59.751 60.000 0.00 0.00 37.94 3.36
379 380 1.079543 CCCTGGCTTCAGTGAGTCG 60.080 63.158 0.00 0.00 36.81 4.18
380 381 1.079543 CCTGGCTTCAGTGAGTCGG 60.080 63.158 0.00 0.00 36.81 4.79
381 382 1.079543 CTGGCTTCAGTGAGTCGGG 60.080 63.158 0.00 0.00 33.96 5.14
382 383 1.533033 TGGCTTCAGTGAGTCGGGA 60.533 57.895 0.00 0.00 0.00 5.14
383 384 1.118965 TGGCTTCAGTGAGTCGGGAA 61.119 55.000 0.00 0.00 0.00 3.97
384 385 0.250513 GGCTTCAGTGAGTCGGGAAT 59.749 55.000 0.00 0.00 0.00 3.01
385 386 1.363744 GCTTCAGTGAGTCGGGAATG 58.636 55.000 0.00 0.00 0.00 2.67
386 387 1.338200 GCTTCAGTGAGTCGGGAATGT 60.338 52.381 0.00 0.00 0.00 2.71
387 388 2.611518 CTTCAGTGAGTCGGGAATGTC 58.388 52.381 0.00 0.00 0.00 3.06
388 389 0.526211 TCAGTGAGTCGGGAATGTCG 59.474 55.000 0.00 0.00 0.00 4.35
389 390 0.526211 CAGTGAGTCGGGAATGTCGA 59.474 55.000 0.00 0.00 0.00 4.20
390 391 0.811915 AGTGAGTCGGGAATGTCGAG 59.188 55.000 0.00 0.00 37.31 4.04
391 392 0.526662 GTGAGTCGGGAATGTCGAGT 59.473 55.000 0.00 0.00 42.18 4.18
392 393 3.626154 GAGTCGGGAATGTCGAGTC 57.374 57.895 5.72 5.72 45.61 3.36
393 394 0.248134 GAGTCGGGAATGTCGAGTCG 60.248 60.000 6.09 6.09 43.88 4.18
394 395 1.872679 GTCGGGAATGTCGAGTCGC 60.873 63.158 7.92 3.74 37.31 5.19
395 396 2.044555 TCGGGAATGTCGAGTCGCT 61.045 57.895 7.92 0.00 32.51 4.93
396 397 1.874019 CGGGAATGTCGAGTCGCTG 60.874 63.158 7.92 0.00 0.00 5.18
397 398 1.511305 GGGAATGTCGAGTCGCTGA 59.489 57.895 7.92 0.00 0.00 4.26
398 399 0.108804 GGGAATGTCGAGTCGCTGAA 60.109 55.000 7.92 0.00 0.00 3.02
399 400 0.992802 GGAATGTCGAGTCGCTGAAC 59.007 55.000 7.92 0.96 0.00 3.18
400 401 0.635731 GAATGTCGAGTCGCTGAACG 59.364 55.000 7.92 0.00 45.62 3.95
401 402 1.344942 AATGTCGAGTCGCTGAACGC 61.345 55.000 7.92 0.00 43.23 4.84
418 419 2.510691 CGATAGGCGCCGGTTTGT 60.511 61.111 23.20 4.49 0.00 2.83
419 420 1.227031 CGATAGGCGCCGGTTTGTA 60.227 57.895 23.20 7.10 0.00 2.41
420 421 0.806884 CGATAGGCGCCGGTTTGTAA 60.807 55.000 23.20 0.28 0.00 2.41
421 422 0.654160 GATAGGCGCCGGTTTGTAAC 59.346 55.000 23.20 1.29 0.00 2.50
422 423 0.036199 ATAGGCGCCGGTTTGTAACA 60.036 50.000 23.20 0.00 0.00 2.41
423 424 0.671163 TAGGCGCCGGTTTGTAACAG 60.671 55.000 23.20 0.00 0.00 3.16
424 425 2.127003 GCGCCGGTTTGTAACAGC 60.127 61.111 1.90 0.00 0.00 4.40
425 426 2.899044 GCGCCGGTTTGTAACAGCA 61.899 57.895 1.90 0.00 33.34 4.41
426 427 1.206578 CGCCGGTTTGTAACAGCAG 59.793 57.895 1.90 0.00 33.34 4.24
427 428 1.503818 CGCCGGTTTGTAACAGCAGT 61.504 55.000 1.90 0.00 33.34 4.40
428 429 1.515081 GCCGGTTTGTAACAGCAGTA 58.485 50.000 1.90 0.00 33.78 2.74
429 430 1.463444 GCCGGTTTGTAACAGCAGTAG 59.537 52.381 1.90 0.00 33.78 2.57
430 431 2.868839 GCCGGTTTGTAACAGCAGTAGA 60.869 50.000 1.90 0.00 33.78 2.59
431 432 3.395639 CCGGTTTGTAACAGCAGTAGAA 58.604 45.455 0.00 0.00 0.00 2.10
432 433 3.810941 CCGGTTTGTAACAGCAGTAGAAA 59.189 43.478 0.00 0.00 0.00 2.52
433 434 4.319261 CCGGTTTGTAACAGCAGTAGAAAC 60.319 45.833 0.00 5.87 0.00 2.78
434 435 4.319261 CGGTTTGTAACAGCAGTAGAAACC 60.319 45.833 16.67 16.67 37.20 3.27
435 436 4.319261 GGTTTGTAACAGCAGTAGAAACCG 60.319 45.833 13.62 0.00 33.95 4.44
436 437 3.034721 TGTAACAGCAGTAGAAACCGG 57.965 47.619 0.00 0.00 0.00 5.28
437 438 1.730612 GTAACAGCAGTAGAAACCGGC 59.269 52.381 0.00 0.00 0.00 6.13
438 439 0.949105 AACAGCAGTAGAAACCGGCG 60.949 55.000 0.00 0.00 33.04 6.46
439 440 2.434359 AGCAGTAGAAACCGGCGC 60.434 61.111 0.00 0.00 33.04 6.53
440 441 3.497031 GCAGTAGAAACCGGCGCC 61.497 66.667 19.07 19.07 0.00 6.53
441 442 2.818274 CAGTAGAAACCGGCGCCC 60.818 66.667 23.46 6.12 0.00 6.13
443 444 4.747529 GTAGAAACCGGCGCCCGT 62.748 66.667 23.46 19.02 46.80 5.28
444 445 3.067439 TAGAAACCGGCGCCCGTA 61.067 61.111 23.46 1.89 46.80 4.02
445 446 3.067480 TAGAAACCGGCGCCCGTAG 62.067 63.158 23.46 10.03 46.80 3.51
453 454 2.203098 GCGCCCGTAGCCCAAATA 60.203 61.111 0.00 0.00 38.78 1.40
454 455 2.251642 GCGCCCGTAGCCCAAATAG 61.252 63.158 0.00 0.00 38.78 1.73
455 456 1.597027 CGCCCGTAGCCCAAATAGG 60.597 63.158 0.00 0.00 38.78 2.57
456 457 1.834301 GCCCGTAGCCCAAATAGGA 59.166 57.895 0.00 0.00 41.22 2.94
457 458 0.181824 GCCCGTAGCCCAAATAGGAA 59.818 55.000 0.00 0.00 41.22 3.36
458 459 1.202891 GCCCGTAGCCCAAATAGGAAT 60.203 52.381 0.00 0.00 41.22 3.01
459 460 2.039348 GCCCGTAGCCCAAATAGGAATA 59.961 50.000 0.00 0.00 41.22 1.75
460 461 3.497227 GCCCGTAGCCCAAATAGGAATAA 60.497 47.826 0.00 0.00 41.22 1.40
461 462 4.070009 CCCGTAGCCCAAATAGGAATAAC 58.930 47.826 0.00 0.00 41.22 1.89
462 463 4.070009 CCGTAGCCCAAATAGGAATAACC 58.930 47.826 0.00 0.00 41.22 2.85
463 464 3.744426 CGTAGCCCAAATAGGAATAACCG 59.256 47.826 0.00 0.00 44.74 4.44
464 465 3.945640 AGCCCAAATAGGAATAACCGT 57.054 42.857 0.00 0.00 44.74 4.83
465 466 3.551846 AGCCCAAATAGGAATAACCGTG 58.448 45.455 0.00 0.00 44.74 4.94
466 467 2.621526 GCCCAAATAGGAATAACCGTGG 59.378 50.000 0.00 0.00 44.74 4.94
467 468 3.219281 CCCAAATAGGAATAACCGTGGG 58.781 50.000 0.00 0.00 44.74 4.61
468 469 3.117813 CCCAAATAGGAATAACCGTGGGA 60.118 47.826 0.00 0.00 45.54 4.37
469 470 4.134563 CCAAATAGGAATAACCGTGGGAG 58.865 47.826 0.00 0.00 44.74 4.30
470 471 4.141574 CCAAATAGGAATAACCGTGGGAGA 60.142 45.833 0.00 0.00 44.74 3.71
471 472 5.433526 CAAATAGGAATAACCGTGGGAGAA 58.566 41.667 0.00 0.00 44.74 2.87
472 473 5.906772 AATAGGAATAACCGTGGGAGAAT 57.093 39.130 0.00 0.00 44.74 2.40
473 474 3.840124 AGGAATAACCGTGGGAGAATC 57.160 47.619 0.00 0.00 44.74 2.52
474 475 3.385115 AGGAATAACCGTGGGAGAATCT 58.615 45.455 0.00 0.00 44.74 2.40
475 476 3.388350 AGGAATAACCGTGGGAGAATCTC 59.612 47.826 0.71 0.71 44.74 2.75
476 477 3.388350 GGAATAACCGTGGGAGAATCTCT 59.612 47.826 10.38 0.00 35.73 3.10
477 478 4.501743 GGAATAACCGTGGGAGAATCTCTC 60.502 50.000 10.38 6.72 42.66 3.20
479 480 4.719997 CGTGGGAGAATCTCTCGC 57.280 61.111 13.40 13.40 45.96 5.03
488 489 5.517322 GGAGAATCTCTCGCTTTAGGTAA 57.483 43.478 10.38 0.00 44.28 2.85
489 490 6.091718 GGAGAATCTCTCGCTTTAGGTAAT 57.908 41.667 10.38 0.00 44.28 1.89
490 491 7.216973 GGAGAATCTCTCGCTTTAGGTAATA 57.783 40.000 10.38 0.00 44.28 0.98
491 492 7.659186 GGAGAATCTCTCGCTTTAGGTAATAA 58.341 38.462 10.38 0.00 44.28 1.40
492 493 7.595875 GGAGAATCTCTCGCTTTAGGTAATAAC 59.404 40.741 10.38 0.00 44.28 1.89
493 494 8.008513 AGAATCTCTCGCTTTAGGTAATAACA 57.991 34.615 0.00 0.00 0.00 2.41
494 495 8.643324 AGAATCTCTCGCTTTAGGTAATAACAT 58.357 33.333 0.00 0.00 0.00 2.71
495 496 8.819643 AATCTCTCGCTTTAGGTAATAACATC 57.180 34.615 0.00 0.00 0.00 3.06
496 497 7.342769 TCTCTCGCTTTAGGTAATAACATCA 57.657 36.000 0.00 0.00 0.00 3.07
497 498 7.201145 TCTCTCGCTTTAGGTAATAACATCAC 58.799 38.462 0.00 0.00 0.00 3.06
498 499 6.869695 TCTCGCTTTAGGTAATAACATCACA 58.130 36.000 0.00 0.00 0.00 3.58
499 500 6.755141 TCTCGCTTTAGGTAATAACATCACAC 59.245 38.462 0.00 0.00 0.00 3.82
500 501 6.399743 TCGCTTTAGGTAATAACATCACACA 58.600 36.000 0.00 0.00 0.00 3.72
501 502 7.045416 TCGCTTTAGGTAATAACATCACACAT 58.955 34.615 0.00 0.00 0.00 3.21
502 503 8.198778 TCGCTTTAGGTAATAACATCACACATA 58.801 33.333 0.00 0.00 0.00 2.29
503 504 8.988934 CGCTTTAGGTAATAACATCACACATAT 58.011 33.333 0.00 0.00 0.00 1.78
541 542 9.941325 AGATAATGTGGCAAACAATAAATGAAA 57.059 25.926 0.00 0.00 43.61 2.69
607 608 8.783833 ATGAGTAACATCATACATATCAAGGC 57.216 34.615 0.00 0.00 38.15 4.35
608 609 7.734942 TGAGTAACATCATACATATCAAGGCA 58.265 34.615 0.00 0.00 0.00 4.75
609 610 8.210265 TGAGTAACATCATACATATCAAGGCAA 58.790 33.333 0.00 0.00 0.00 4.52
610 611 8.613060 AGTAACATCATACATATCAAGGCAAG 57.387 34.615 0.00 0.00 0.00 4.01
611 612 8.432013 AGTAACATCATACATATCAAGGCAAGA 58.568 33.333 0.00 0.00 0.00 3.02
612 613 9.224267 GTAACATCATACATATCAAGGCAAGAT 57.776 33.333 0.00 0.00 0.00 2.40
613 614 7.683437 ACATCATACATATCAAGGCAAGATG 57.317 36.000 0.00 0.00 36.24 2.90
614 615 7.455891 ACATCATACATATCAAGGCAAGATGA 58.544 34.615 0.00 0.00 34.73 2.92
615 616 7.606839 ACATCATACATATCAAGGCAAGATGAG 59.393 37.037 0.00 0.00 34.73 2.90
616 617 7.071069 TCATACATATCAAGGCAAGATGAGT 57.929 36.000 2.43 3.74 0.00 3.41
617 618 7.157347 TCATACATATCAAGGCAAGATGAGTC 58.843 38.462 2.43 0.00 0.00 3.36
618 619 5.627182 ACATATCAAGGCAAGATGAGTCT 57.373 39.130 2.43 0.00 35.82 3.24
619 620 6.737720 ACATATCAAGGCAAGATGAGTCTA 57.262 37.500 2.43 0.00 33.30 2.59
620 621 7.313740 ACATATCAAGGCAAGATGAGTCTAT 57.686 36.000 2.43 0.00 33.30 1.98
621 622 8.427902 ACATATCAAGGCAAGATGAGTCTATA 57.572 34.615 2.43 0.00 33.30 1.31
622 623 8.530311 ACATATCAAGGCAAGATGAGTCTATAG 58.470 37.037 0.00 0.00 33.30 1.31
623 624 6.992664 ATCAAGGCAAGATGAGTCTATAGT 57.007 37.500 0.00 0.00 33.30 2.12
624 625 6.398234 TCAAGGCAAGATGAGTCTATAGTC 57.602 41.667 0.00 0.00 33.30 2.59
625 626 6.132658 TCAAGGCAAGATGAGTCTATAGTCT 58.867 40.000 0.00 0.00 33.30 3.24
626 627 7.290813 TCAAGGCAAGATGAGTCTATAGTCTA 58.709 38.462 0.00 0.00 33.30 2.59
627 628 7.780271 TCAAGGCAAGATGAGTCTATAGTCTAA 59.220 37.037 0.00 0.00 33.30 2.10
628 629 8.584157 CAAGGCAAGATGAGTCTATAGTCTAAT 58.416 37.037 0.00 0.00 33.30 1.73
629 630 9.815306 AAGGCAAGATGAGTCTATAGTCTAATA 57.185 33.333 0.00 0.00 33.30 0.98
630 631 9.815306 AGGCAAGATGAGTCTATAGTCTAATAA 57.185 33.333 0.00 0.00 33.30 1.40
656 657 8.834004 ATGAAGTGTTATAGAGGGTAGTAACA 57.166 34.615 0.00 0.00 35.39 2.41
657 658 8.834004 TGAAGTGTTATAGAGGGTAGTAACAT 57.166 34.615 0.00 0.00 38.73 2.71
658 659 9.925545 TGAAGTGTTATAGAGGGTAGTAACATA 57.074 33.333 0.00 0.00 38.73 2.29
661 662 9.571816 AGTGTTATAGAGGGTAGTAACATAGAC 57.428 37.037 0.00 0.00 38.73 2.59
662 663 9.571816 GTGTTATAGAGGGTAGTAACATAGACT 57.428 37.037 0.00 0.00 38.73 3.24
669 670 8.776119 AGAGGGTAGTAACATAGACTAGTAACA 58.224 37.037 0.00 0.00 30.08 2.41
670 671 9.571816 GAGGGTAGTAACATAGACTAGTAACAT 57.428 37.037 0.00 0.00 30.08 2.71
698 699 9.976511 TGCATGTTACTAGTCTATGTTATTACC 57.023 33.333 0.00 0.00 0.00 2.85
699 700 9.420551 GCATGTTACTAGTCTATGTTATTACCC 57.579 37.037 0.00 0.00 0.00 3.69
706 707 8.429641 ACTAGTCTATGTTATTACCCATTGTGG 58.570 37.037 0.00 0.00 37.25 4.17
707 708 6.062095 AGTCTATGTTATTACCCATTGTGGC 58.938 40.000 0.00 0.00 35.79 5.01
708 709 6.062095 GTCTATGTTATTACCCATTGTGGCT 58.938 40.000 0.00 0.00 35.79 4.75
709 710 7.071950 AGTCTATGTTATTACCCATTGTGGCTA 59.928 37.037 0.00 0.00 35.79 3.93
710 711 7.387948 GTCTATGTTATTACCCATTGTGGCTAG 59.612 40.741 0.00 0.00 35.79 3.42
711 712 5.444744 TGTTATTACCCATTGTGGCTAGT 57.555 39.130 0.00 0.00 35.79 2.57
712 713 5.433526 TGTTATTACCCATTGTGGCTAGTC 58.566 41.667 0.00 0.00 35.79 2.59
720 721 3.865745 CCATTGTGGCTAGTCTAAGTTCG 59.134 47.826 0.00 0.00 0.00 3.95
721 722 4.495422 CATTGTGGCTAGTCTAAGTTCGT 58.505 43.478 0.00 0.00 0.00 3.85
726 727 2.924290 GGCTAGTCTAAGTTCGTTGCAG 59.076 50.000 0.00 0.00 0.00 4.41
728 729 3.608939 GCTAGTCTAAGTTCGTTGCAGAC 59.391 47.826 0.00 0.00 36.67 3.51
739 740 2.807967 TCGTTGCAGACCAAGATTTCAG 59.192 45.455 0.00 0.00 33.21 3.02
743 744 1.135859 GCAGACCAAGATTTCAGTGCG 60.136 52.381 0.00 0.00 0.00 5.34
757 758 0.327924 AGTGCGGACATCCAAATCCA 59.672 50.000 10.52 0.00 34.35 3.41
759 760 1.543802 GTGCGGACATCCAAATCCAAA 59.456 47.619 0.63 0.00 34.35 3.28
785 786 5.470098 ACACTAAAACTGCATTCACGAAGAT 59.530 36.000 0.00 0.00 0.00 2.40
1440 1461 2.520741 GGCGAGGAGGAGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
1441 1462 2.520741 GCGAGGAGGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
1442 1463 3.063197 GCGAGGAGGAGGAGGAGGA 62.063 68.421 0.00 0.00 0.00 3.71
1744 1768 7.281999 AGGACGTATTACTTGAGTAGGAAGTAC 59.718 40.741 0.00 0.00 35.99 2.73
1746 1770 7.983307 ACGTATTACTTGAGTAGGAAGTACTG 58.017 38.462 0.00 0.00 42.48 2.74
1757 1781 6.343703 AGTAGGAAGTACTGTCGTTGTTTTT 58.656 36.000 0.00 0.00 40.76 1.94
1848 1874 3.116959 AGTATTTGGGGGTGGTTATCGA 58.883 45.455 0.00 0.00 0.00 3.59
1853 1879 1.201424 GGGGGTGGTTATCGAGAGTT 58.799 55.000 0.00 0.00 0.00 3.01
1864 1890 5.450965 GGTTATCGAGAGTTGTATTCGGGAA 60.451 44.000 0.00 0.00 35.21 3.97
1959 1988 6.654161 CAGAATGGACATGAAAGTTCTCTCTT 59.346 38.462 0.00 0.00 0.00 2.85
1979 2008 9.956720 CTCTCTTAGATGTCACATTTTGTTTTT 57.043 29.630 0.00 0.00 0.00 1.94
1980 2009 9.734620 TCTCTTAGATGTCACATTTTGTTTTTG 57.265 29.630 0.00 0.00 0.00 2.44
1981 2010 9.734620 CTCTTAGATGTCACATTTTGTTTTTGA 57.265 29.630 0.00 0.00 0.00 2.69
2065 2094 4.123571 CCCCCTCCACGTCTTACA 57.876 61.111 0.00 0.00 0.00 2.41
2066 2095 2.604118 CCCCCTCCACGTCTTACAT 58.396 57.895 0.00 0.00 0.00 2.29
2067 2096 0.909623 CCCCCTCCACGTCTTACATT 59.090 55.000 0.00 0.00 0.00 2.71
2068 2097 2.112998 CCCCCTCCACGTCTTACATTA 58.887 52.381 0.00 0.00 0.00 1.90
2069 2098 2.704065 CCCCCTCCACGTCTTACATTAT 59.296 50.000 0.00 0.00 0.00 1.28
2070 2099 3.899360 CCCCCTCCACGTCTTACATTATA 59.101 47.826 0.00 0.00 0.00 0.98
2071 2100 4.530946 CCCCCTCCACGTCTTACATTATAT 59.469 45.833 0.00 0.00 0.00 0.86
2072 2101 5.479306 CCCCTCCACGTCTTACATTATATG 58.521 45.833 0.00 0.00 0.00 1.78
2073 2102 5.245301 CCCCTCCACGTCTTACATTATATGA 59.755 44.000 0.00 0.00 0.00 2.15
2074 2103 6.070767 CCCCTCCACGTCTTACATTATATGAT 60.071 42.308 0.00 0.00 0.00 2.45
2075 2104 6.813649 CCCTCCACGTCTTACATTATATGATG 59.186 42.308 5.95 5.95 0.00 3.07
2076 2105 7.309805 CCCTCCACGTCTTACATTATATGATGA 60.310 40.741 13.98 0.00 0.00 2.92
2077 2106 8.088365 CCTCCACGTCTTACATTATATGATGAA 58.912 37.037 13.98 3.99 0.00 2.57
2078 2107 9.133627 CTCCACGTCTTACATTATATGATGAAG 57.866 37.037 13.98 11.95 0.00 3.02
2079 2108 8.856103 TCCACGTCTTACATTATATGATGAAGA 58.144 33.333 13.98 13.65 0.00 2.87
2080 2109 9.476202 CCACGTCTTACATTATATGATGAAGAA 57.524 33.333 13.98 4.78 31.43 2.52
2113 2142 6.916360 TTTACATCTTCAAGGCCAGAAAAT 57.084 33.333 5.01 0.00 0.00 1.82
2114 2143 4.796038 ACATCTTCAAGGCCAGAAAATG 57.204 40.909 17.76 17.76 31.43 2.32
2117 2146 2.559668 TCTTCAAGGCCAGAAAATGCTG 59.440 45.455 5.01 0.00 35.66 4.41
2129 2158 6.238842 GCCAGAAAATGCTGCTTCAATAGATA 60.239 38.462 0.00 0.00 34.56 1.98
2132 2161 9.181805 CAGAAAATGCTGCTTCAATAGATAATG 57.818 33.333 0.00 0.00 0.00 1.90
2133 2162 8.910944 AGAAAATGCTGCTTCAATAGATAATGT 58.089 29.630 0.00 0.00 0.00 2.71
2163 2192 9.717942 TGCAAAAATAATAAATTACACCAGCTT 57.282 25.926 0.00 0.00 0.00 3.74
2170 2199 7.396540 AATAAATTACACCAGCTTCTCCAAG 57.603 36.000 0.00 0.00 0.00 3.61
2177 2206 2.082231 CCAGCTTCTCCAAGTGATGTG 58.918 52.381 0.00 0.00 31.45 3.21
2178 2207 2.551721 CCAGCTTCTCCAAGTGATGTGT 60.552 50.000 0.00 0.00 31.45 3.72
2179 2208 3.144506 CAGCTTCTCCAAGTGATGTGTT 58.855 45.455 0.00 0.00 31.45 3.32
2180 2209 3.058432 CAGCTTCTCCAAGTGATGTGTTG 60.058 47.826 0.00 0.00 31.45 3.33
2181 2210 2.880890 GCTTCTCCAAGTGATGTGTTGT 59.119 45.455 0.00 0.00 31.45 3.32
2182 2211 4.065088 GCTTCTCCAAGTGATGTGTTGTA 58.935 43.478 0.00 0.00 31.45 2.41
2183 2212 4.153117 GCTTCTCCAAGTGATGTGTTGTAG 59.847 45.833 0.00 0.00 31.45 2.74
2205 2234 4.940046 AGAATACAACACTTGGAGATGCAG 59.060 41.667 0.00 0.00 34.12 4.41
2224 2253 2.092538 CAGATTTGCATCTCCACCTCCT 60.093 50.000 0.00 0.00 37.71 3.69
2225 2254 2.579860 AGATTTGCATCTCCACCTCCTT 59.420 45.455 0.00 0.00 34.26 3.36
2226 2255 2.205022 TTTGCATCTCCACCTCCTTG 57.795 50.000 0.00 0.00 0.00 3.61
2243 2272 2.231235 CCTTGGTGATGTAAAACAGCCC 59.769 50.000 0.00 0.00 32.69 5.19
2246 2275 1.165270 GTGATGTAAAACAGCCCGCT 58.835 50.000 0.00 0.00 32.69 5.52
2259 2288 4.505217 CCGCTGCGCACGAATGTC 62.505 66.667 26.33 6.09 0.00 3.06
2263 2292 1.573932 CTGCGCACGAATGTCCAAA 59.426 52.632 5.66 0.00 0.00 3.28
2268 2297 1.945522 CACGAATGTCCAAACGCCA 59.054 52.632 0.00 0.00 0.00 5.69
2283 2312 1.880027 ACGCCACTTCATTTCAGTTCC 59.120 47.619 0.00 0.00 0.00 3.62
2284 2313 1.879380 CGCCACTTCATTTCAGTTCCA 59.121 47.619 0.00 0.00 0.00 3.53
2286 2315 2.029918 GCCACTTCATTTCAGTTCCACC 60.030 50.000 0.00 0.00 0.00 4.61
2337 2382 4.181010 CCCCATGCCTGACTCCGG 62.181 72.222 0.00 0.00 0.00 5.14
2344 2389 3.391382 CCTGACTCCGGTGACCCC 61.391 72.222 11.17 0.00 0.00 4.95
2368 2413 2.046988 TCCGTCGCCGTCAGTCTA 60.047 61.111 0.00 0.00 0.00 2.59
2377 2422 0.531200 CCGTCAGTCTAACCCACCTC 59.469 60.000 0.00 0.00 0.00 3.85
2378 2423 0.170561 CGTCAGTCTAACCCACCTCG 59.829 60.000 0.00 0.00 0.00 4.63
2382 2427 3.766691 TCTAACCCACCTCGCCGC 61.767 66.667 0.00 0.00 0.00 6.53
2411 2456 4.025401 GCGCAACCACCTTCACCG 62.025 66.667 0.30 0.00 0.00 4.94
2413 2458 2.604174 CGCAACCACCTTCACCGAC 61.604 63.158 0.00 0.00 0.00 4.79
2415 2460 1.599797 CAACCACCTTCACCGACCC 60.600 63.158 0.00 0.00 0.00 4.46
2418 2463 2.358737 CACCTTCACCGACCCTGC 60.359 66.667 0.00 0.00 0.00 4.85
2423 2468 4.631740 TCACCGACCCTGCCTCCA 62.632 66.667 0.00 0.00 0.00 3.86
2489 2552 3.181967 CCCGCGAAGAAGCTGTCG 61.182 66.667 8.23 9.67 40.24 4.35
2493 2556 3.843240 CGAAGAAGCTGTCGCGGC 61.843 66.667 2.29 2.29 42.32 6.53
2495 2558 3.941657 GAAGAAGCTGTCGCGGCCT 62.942 63.158 8.89 0.00 42.32 5.19
2512 2576 2.924101 TAAACCCGCGGTGGAGGT 60.924 61.111 26.12 11.69 42.00 3.85
2523 2587 3.241530 TGGAGGTGTGAAGCGGCT 61.242 61.111 0.00 0.00 0.00 5.52
2559 2623 2.018866 CGGCGAATCCATCTCGAGC 61.019 63.158 7.81 0.00 38.61 5.03
2573 2640 2.815647 GAGCGGCCAAGACGAAGG 60.816 66.667 2.24 0.00 35.20 3.46
2580 2647 3.479269 CAAGACGAAGGCGGTCGC 61.479 66.667 12.59 6.83 45.00 5.19
2593 2660 3.482783 GTCGCGGCTGCTTCAGTC 61.483 66.667 17.03 0.00 39.65 3.51
2601 2668 2.002127 CTGCTTCAGTCGATTCGCC 58.998 57.895 0.00 0.00 0.00 5.54
2602 2669 0.737367 CTGCTTCAGTCGATTCGCCA 60.737 55.000 0.00 0.00 0.00 5.69
2627 2716 2.522271 GTCATGGACCTCCTCCTCC 58.478 63.158 0.00 0.00 40.26 4.30
2628 2717 0.325671 GTCATGGACCTCCTCCTCCA 60.326 60.000 0.00 0.00 40.26 3.86
2629 2718 0.325671 TCATGGACCTCCTCCTCCAC 60.326 60.000 0.00 0.00 39.44 4.02
2630 2719 1.003573 ATGGACCTCCTCCTCCACC 59.996 63.158 0.00 0.00 39.44 4.61
2631 2720 1.826384 ATGGACCTCCTCCTCCACCA 61.826 60.000 0.00 0.00 39.44 4.17
2632 2721 1.990614 GGACCTCCTCCTCCACCAC 60.991 68.421 0.00 0.00 35.89 4.16
2633 2722 1.990614 GACCTCCTCCTCCACCACC 60.991 68.421 0.00 0.00 0.00 4.61
2634 2723 2.122729 CCTCCTCCTCCACCACCA 59.877 66.667 0.00 0.00 0.00 4.17
2635 2724 2.294078 CCTCCTCCTCCACCACCAC 61.294 68.421 0.00 0.00 0.00 4.16
2636 2725 1.536418 CTCCTCCTCCACCACCACA 60.536 63.158 0.00 0.00 0.00 4.17
2637 2726 1.074090 TCCTCCTCCACCACCACAA 60.074 57.895 0.00 0.00 0.00 3.33
2638 2727 1.127567 TCCTCCTCCACCACCACAAG 61.128 60.000 0.00 0.00 0.00 3.16
2639 2728 1.302832 CTCCTCCACCACCACAAGC 60.303 63.158 0.00 0.00 0.00 4.01
2664 2753 2.190578 CCGGCCATGGAGGAAGAC 59.809 66.667 18.40 0.00 41.22 3.01
2666 2755 2.990479 GGCCATGGAGGAAGACGT 59.010 61.111 18.40 0.00 41.22 4.34
2667 2756 1.450312 GGCCATGGAGGAAGACGTG 60.450 63.158 18.40 0.00 41.22 4.49
2669 2758 1.983224 CCATGGAGGAAGACGTGGT 59.017 57.895 5.56 0.00 41.22 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 9.241919 ACTCAAAATGTTGAACATGTATATGGA 57.758 29.630 12.09 2.92 43.18 3.41
147 148 9.007901 TGAACAAGGTTTTGAAAAATGTTGAAT 57.992 25.926 16.99 6.58 37.73 2.57
148 149 8.383318 TGAACAAGGTTTTGAAAAATGTTGAA 57.617 26.923 16.99 7.35 37.73 2.69
149 150 7.969536 TGAACAAGGTTTTGAAAAATGTTGA 57.030 28.000 16.99 9.83 37.73 3.18
150 151 8.072567 TGTTGAACAAGGTTTTGAAAAATGTTG 58.927 29.630 16.99 11.85 37.73 3.33
151 152 8.159344 TGTTGAACAAGGTTTTGAAAAATGTT 57.841 26.923 13.85 13.85 37.73 2.71
152 153 7.736447 TGTTGAACAAGGTTTTGAAAAATGT 57.264 28.000 0.00 0.00 37.73 2.71
153 154 9.623350 AAATGTTGAACAAGGTTTTGAAAAATG 57.377 25.926 0.62 0.00 37.73 2.32
199 200 7.986085 TCTCCCAAAAACAACATTTGAAAAA 57.014 28.000 0.83 0.00 39.56 1.94
200 201 7.986085 TTCTCCCAAAAACAACATTTGAAAA 57.014 28.000 0.83 0.00 39.56 2.29
201 202 7.609532 ACATTCTCCCAAAAACAACATTTGAAA 59.390 29.630 0.83 0.00 39.56 2.69
202 203 7.108847 ACATTCTCCCAAAAACAACATTTGAA 58.891 30.769 0.83 0.00 39.56 2.69
203 204 6.648192 ACATTCTCCCAAAAACAACATTTGA 58.352 32.000 0.83 0.00 39.56 2.69
204 205 6.923928 ACATTCTCCCAAAAACAACATTTG 57.076 33.333 0.00 0.00 37.48 2.32
205 206 7.936496 AAACATTCTCCCAAAAACAACATTT 57.064 28.000 0.00 0.00 0.00 2.32
206 207 7.936496 AAAACATTCTCCCAAAAACAACATT 57.064 28.000 0.00 0.00 0.00 2.71
207 208 7.392953 ACAAAAACATTCTCCCAAAAACAACAT 59.607 29.630 0.00 0.00 0.00 2.71
208 209 6.712547 ACAAAAACATTCTCCCAAAAACAACA 59.287 30.769 0.00 0.00 0.00 3.33
209 210 7.139896 ACAAAAACATTCTCCCAAAAACAAC 57.860 32.000 0.00 0.00 0.00 3.32
210 211 8.848474 TTACAAAAACATTCTCCCAAAAACAA 57.152 26.923 0.00 0.00 0.00 2.83
302 303 3.118408 GCCTGTTTCCTGTTTCCCTTTTT 60.118 43.478 0.00 0.00 0.00 1.94
303 304 2.434336 GCCTGTTTCCTGTTTCCCTTTT 59.566 45.455 0.00 0.00 0.00 2.27
304 305 2.039418 GCCTGTTTCCTGTTTCCCTTT 58.961 47.619 0.00 0.00 0.00 3.11
305 306 1.063266 TGCCTGTTTCCTGTTTCCCTT 60.063 47.619 0.00 0.00 0.00 3.95
306 307 0.555769 TGCCTGTTTCCTGTTTCCCT 59.444 50.000 0.00 0.00 0.00 4.20
307 308 0.961753 CTGCCTGTTTCCTGTTTCCC 59.038 55.000 0.00 0.00 0.00 3.97
308 309 0.961753 CCTGCCTGTTTCCTGTTTCC 59.038 55.000 0.00 0.00 0.00 3.13
309 310 0.961753 CCCTGCCTGTTTCCTGTTTC 59.038 55.000 0.00 0.00 0.00 2.78
310 311 1.115326 GCCCTGCCTGTTTCCTGTTT 61.115 55.000 0.00 0.00 0.00 2.83
311 312 1.531602 GCCCTGCCTGTTTCCTGTT 60.532 57.895 0.00 0.00 0.00 3.16
312 313 2.011617 AAGCCCTGCCTGTTTCCTGT 62.012 55.000 0.00 0.00 0.00 4.00
313 314 0.038166 TAAGCCCTGCCTGTTTCCTG 59.962 55.000 0.00 0.00 0.00 3.86
314 315 0.038310 GTAAGCCCTGCCTGTTTCCT 59.962 55.000 0.00 0.00 0.00 3.36
315 316 0.965866 GGTAAGCCCTGCCTGTTTCC 60.966 60.000 0.00 0.00 0.00 3.13
316 317 2.568003 GGTAAGCCCTGCCTGTTTC 58.432 57.895 0.00 0.00 0.00 2.78
317 318 4.843624 GGTAAGCCCTGCCTGTTT 57.156 55.556 0.00 0.00 0.00 2.83
345 346 3.942439 GGAGAGTATGGGCCGGCC 61.942 72.222 38.57 38.57 0.00 6.13
346 347 3.942439 GGGAGAGTATGGGCCGGC 61.942 72.222 21.18 21.18 0.00 6.13
347 348 2.122813 AGGGAGAGTATGGGCCGG 60.123 66.667 0.00 0.00 0.00 6.13
348 349 2.511452 CCAGGGAGAGTATGGGCCG 61.511 68.421 0.00 0.00 0.00 6.13
349 350 2.823758 GCCAGGGAGAGTATGGGCC 61.824 68.421 0.00 0.00 35.42 5.80
350 351 1.348775 AAGCCAGGGAGAGTATGGGC 61.349 60.000 0.00 0.00 41.65 5.36
351 352 0.761802 GAAGCCAGGGAGAGTATGGG 59.238 60.000 0.00 0.00 34.52 4.00
352 353 1.415659 CTGAAGCCAGGGAGAGTATGG 59.584 57.143 0.00 0.00 36.77 2.74
353 354 2.114616 ACTGAAGCCAGGGAGAGTATG 58.885 52.381 0.00 0.00 44.60 2.39
354 355 2.114616 CACTGAAGCCAGGGAGAGTAT 58.885 52.381 0.00 0.00 46.73 2.12
355 356 1.561643 CACTGAAGCCAGGGAGAGTA 58.438 55.000 0.00 0.00 46.73 2.59
356 357 2.370718 CACTGAAGCCAGGGAGAGT 58.629 57.895 0.00 0.00 46.73 3.24
361 362 1.079543 CGACTCACTGAAGCCAGGG 60.080 63.158 0.00 0.00 45.16 4.45
362 363 1.079543 CCGACTCACTGAAGCCAGG 60.080 63.158 0.00 0.00 44.60 4.45
363 364 1.079543 CCCGACTCACTGAAGCCAG 60.080 63.158 0.00 0.00 45.76 4.85
364 365 1.118965 TTCCCGACTCACTGAAGCCA 61.119 55.000 0.00 0.00 0.00 4.75
365 366 0.250513 ATTCCCGACTCACTGAAGCC 59.749 55.000 0.00 0.00 0.00 4.35
366 367 1.338200 ACATTCCCGACTCACTGAAGC 60.338 52.381 0.00 0.00 0.00 3.86
367 368 2.611518 GACATTCCCGACTCACTGAAG 58.388 52.381 0.00 0.00 0.00 3.02
368 369 1.067846 CGACATTCCCGACTCACTGAA 60.068 52.381 0.00 0.00 0.00 3.02
369 370 0.526211 CGACATTCCCGACTCACTGA 59.474 55.000 0.00 0.00 0.00 3.41
370 371 0.526211 TCGACATTCCCGACTCACTG 59.474 55.000 0.00 0.00 0.00 3.66
371 372 0.811915 CTCGACATTCCCGACTCACT 59.188 55.000 0.00 0.00 32.18 3.41
372 373 0.526662 ACTCGACATTCCCGACTCAC 59.473 55.000 0.00 0.00 32.18 3.51
373 374 0.809385 GACTCGACATTCCCGACTCA 59.191 55.000 0.00 0.00 32.18 3.41
374 375 0.248134 CGACTCGACATTCCCGACTC 60.248 60.000 0.00 0.00 32.18 3.36
375 376 1.801332 CGACTCGACATTCCCGACT 59.199 57.895 0.00 0.00 32.18 4.18
376 377 1.872679 GCGACTCGACATTCCCGAC 60.873 63.158 1.63 0.00 32.18 4.79
377 378 2.044555 AGCGACTCGACATTCCCGA 61.045 57.895 1.63 0.00 34.61 5.14
378 379 1.874019 CAGCGACTCGACATTCCCG 60.874 63.158 1.63 0.00 0.00 5.14
379 380 0.108804 TTCAGCGACTCGACATTCCC 60.109 55.000 1.63 0.00 0.00 3.97
380 381 0.992802 GTTCAGCGACTCGACATTCC 59.007 55.000 1.63 0.00 0.00 3.01
381 382 0.635731 CGTTCAGCGACTCGACATTC 59.364 55.000 1.63 0.00 44.77 2.67
382 383 1.344942 GCGTTCAGCGACTCGACATT 61.345 55.000 1.63 0.00 44.77 2.71
383 384 1.801913 GCGTTCAGCGACTCGACAT 60.802 57.895 1.63 0.00 44.77 3.06
384 385 2.428569 GCGTTCAGCGACTCGACA 60.429 61.111 1.63 0.00 44.77 4.35
401 402 0.806884 TTACAAACCGGCGCCTATCG 60.807 55.000 26.68 11.17 42.12 2.92
402 403 0.654160 GTTACAAACCGGCGCCTATC 59.346 55.000 26.68 4.15 0.00 2.08
403 404 0.036199 TGTTACAAACCGGCGCCTAT 60.036 50.000 26.68 9.53 0.00 2.57
404 405 0.671163 CTGTTACAAACCGGCGCCTA 60.671 55.000 26.68 5.69 0.00 3.93
405 406 1.964373 CTGTTACAAACCGGCGCCT 60.964 57.895 26.68 6.90 0.00 5.52
406 407 2.559330 CTGTTACAAACCGGCGCC 59.441 61.111 19.07 19.07 0.00 6.53
407 408 2.127003 GCTGTTACAAACCGGCGC 60.127 61.111 0.00 0.00 0.00 6.53
408 409 1.206578 CTGCTGTTACAAACCGGCG 59.793 57.895 0.00 0.00 33.74 6.46
409 410 1.463444 CTACTGCTGTTACAAACCGGC 59.537 52.381 0.00 0.00 0.00 6.13
410 411 3.034721 TCTACTGCTGTTACAAACCGG 57.965 47.619 0.00 0.00 0.00 5.28
411 412 4.319261 GGTTTCTACTGCTGTTACAAACCG 60.319 45.833 19.14 0.00 32.90 4.44
412 413 4.319261 CGGTTTCTACTGCTGTTACAAACC 60.319 45.833 21.57 21.57 36.08 3.27
413 414 4.319261 CCGGTTTCTACTGCTGTTACAAAC 60.319 45.833 0.09 8.54 0.00 2.93
414 415 3.810941 CCGGTTTCTACTGCTGTTACAAA 59.189 43.478 0.09 0.00 0.00 2.83
415 416 3.395639 CCGGTTTCTACTGCTGTTACAA 58.604 45.455 0.09 0.00 0.00 2.41
416 417 2.868839 GCCGGTTTCTACTGCTGTTACA 60.869 50.000 1.90 0.00 0.00 2.41
417 418 1.730612 GCCGGTTTCTACTGCTGTTAC 59.269 52.381 1.90 0.00 0.00 2.50
418 419 1.670674 CGCCGGTTTCTACTGCTGTTA 60.671 52.381 1.90 0.00 0.00 2.41
419 420 0.949105 CGCCGGTTTCTACTGCTGTT 60.949 55.000 1.90 0.00 0.00 3.16
420 421 1.374252 CGCCGGTTTCTACTGCTGT 60.374 57.895 1.90 0.66 0.00 4.40
421 422 2.740714 GCGCCGGTTTCTACTGCTG 61.741 63.158 1.90 0.00 0.00 4.41
422 423 2.434359 GCGCCGGTTTCTACTGCT 60.434 61.111 1.90 0.00 0.00 4.24
423 424 3.497031 GGCGCCGGTTTCTACTGC 61.497 66.667 12.58 0.00 0.00 4.40
424 425 2.818274 GGGCGCCGGTTTCTACTG 60.818 66.667 22.54 0.00 0.00 2.74
425 426 4.446413 CGGGCGCCGGTTTCTACT 62.446 66.667 24.78 0.00 44.15 2.57
437 438 1.597027 CCTATTTGGGCTACGGGCG 60.597 63.158 0.00 0.00 42.94 6.13
438 439 0.181824 TTCCTATTTGGGCTACGGGC 59.818 55.000 0.00 0.00 40.90 6.13
439 440 2.951229 ATTCCTATTTGGGCTACGGG 57.049 50.000 0.00 0.00 36.20 5.28
440 441 4.070009 GGTTATTCCTATTTGGGCTACGG 58.930 47.826 0.00 0.00 36.20 4.02
441 442 3.744426 CGGTTATTCCTATTTGGGCTACG 59.256 47.826 0.00 0.00 36.20 3.51
442 443 4.514066 CACGGTTATTCCTATTTGGGCTAC 59.486 45.833 0.00 0.00 36.20 3.58
443 444 4.445162 CCACGGTTATTCCTATTTGGGCTA 60.445 45.833 0.00 0.00 36.20 3.93
444 445 3.551846 CACGGTTATTCCTATTTGGGCT 58.448 45.455 0.00 0.00 36.20 5.19
445 446 2.621526 CCACGGTTATTCCTATTTGGGC 59.378 50.000 0.00 0.00 36.20 5.36
446 447 3.117813 TCCCACGGTTATTCCTATTTGGG 60.118 47.826 0.00 0.00 39.24 4.12
447 448 4.134563 CTCCCACGGTTATTCCTATTTGG 58.865 47.826 0.00 0.00 37.10 3.28
448 449 5.031066 TCTCCCACGGTTATTCCTATTTG 57.969 43.478 0.00 0.00 0.00 2.32
449 450 5.703730 TTCTCCCACGGTTATTCCTATTT 57.296 39.130 0.00 0.00 0.00 1.40
450 451 5.607171 AGATTCTCCCACGGTTATTCCTATT 59.393 40.000 0.00 0.00 0.00 1.73
451 452 5.155905 AGATTCTCCCACGGTTATTCCTAT 58.844 41.667 0.00 0.00 0.00 2.57
452 453 4.553678 AGATTCTCCCACGGTTATTCCTA 58.446 43.478 0.00 0.00 0.00 2.94
453 454 3.385115 AGATTCTCCCACGGTTATTCCT 58.615 45.455 0.00 0.00 0.00 3.36
454 455 3.388350 AGAGATTCTCCCACGGTTATTCC 59.612 47.826 10.09 0.00 0.00 3.01
455 456 4.623002 GAGAGATTCTCCCACGGTTATTC 58.377 47.826 10.09 0.00 37.55 1.75
456 457 3.068307 CGAGAGATTCTCCCACGGTTATT 59.932 47.826 10.09 0.00 40.34 1.40
457 458 2.623889 CGAGAGATTCTCCCACGGTTAT 59.376 50.000 10.09 0.00 40.34 1.89
458 459 2.022195 CGAGAGATTCTCCCACGGTTA 58.978 52.381 10.09 0.00 40.34 2.85
459 460 0.818296 CGAGAGATTCTCCCACGGTT 59.182 55.000 10.09 0.00 40.34 4.44
460 461 1.668101 GCGAGAGATTCTCCCACGGT 61.668 60.000 19.33 0.60 40.34 4.83
461 462 1.066587 GCGAGAGATTCTCCCACGG 59.933 63.158 19.33 5.61 40.34 4.94
462 463 0.457851 AAGCGAGAGATTCTCCCACG 59.542 55.000 10.09 13.67 40.34 4.94
463 464 2.682155 AAAGCGAGAGATTCTCCCAC 57.318 50.000 10.09 0.18 39.83 4.61
464 465 2.695666 CCTAAAGCGAGAGATTCTCCCA 59.304 50.000 10.09 0.00 39.83 4.37
465 466 2.696187 ACCTAAAGCGAGAGATTCTCCC 59.304 50.000 10.09 0.00 39.83 4.30
466 467 5.517322 TTACCTAAAGCGAGAGATTCTCC 57.483 43.478 10.09 1.62 39.83 3.71
467 468 8.136165 TGTTATTACCTAAAGCGAGAGATTCTC 58.864 37.037 5.49 5.49 39.83 2.87
468 469 8.008513 TGTTATTACCTAAAGCGAGAGATTCT 57.991 34.615 0.00 0.00 39.83 2.40
469 470 8.819643 ATGTTATTACCTAAAGCGAGAGATTC 57.180 34.615 0.00 0.00 39.83 2.52
470 471 8.421784 TGATGTTATTACCTAAAGCGAGAGATT 58.578 33.333 0.00 0.00 44.60 2.40
471 472 7.868415 GTGATGTTATTACCTAAAGCGAGAGAT 59.132 37.037 0.00 0.00 0.00 2.75
472 473 7.147966 TGTGATGTTATTACCTAAAGCGAGAGA 60.148 37.037 0.00 0.00 0.00 3.10
473 474 6.978659 TGTGATGTTATTACCTAAAGCGAGAG 59.021 38.462 0.00 0.00 0.00 3.20
474 475 6.755141 GTGTGATGTTATTACCTAAAGCGAGA 59.245 38.462 0.00 0.00 0.00 4.04
475 476 6.533723 TGTGTGATGTTATTACCTAAAGCGAG 59.466 38.462 0.00 0.00 0.00 5.03
476 477 6.399743 TGTGTGATGTTATTACCTAAAGCGA 58.600 36.000 0.00 0.00 0.00 4.93
477 478 6.656314 TGTGTGATGTTATTACCTAAAGCG 57.344 37.500 0.00 0.00 0.00 4.68
515 516 9.941325 TTTCATTTATTGTTTGCCACATTATCT 57.059 25.926 0.00 0.00 34.43 1.98
541 542 9.529325 GCTATGTTACCACTTTTCTTTTCTTTT 57.471 29.630 0.00 0.00 0.00 2.27
542 543 8.914011 AGCTATGTTACCACTTTTCTTTTCTTT 58.086 29.630 0.00 0.00 0.00 2.52
543 544 8.465273 AGCTATGTTACCACTTTTCTTTTCTT 57.535 30.769 0.00 0.00 0.00 2.52
544 545 9.220767 CTAGCTATGTTACCACTTTTCTTTTCT 57.779 33.333 0.00 0.00 0.00 2.52
545 546 9.000486 ACTAGCTATGTTACCACTTTTCTTTTC 58.000 33.333 0.00 0.00 0.00 2.29
546 547 8.919777 ACTAGCTATGTTACCACTTTTCTTTT 57.080 30.769 0.00 0.00 0.00 2.27
547 548 8.919777 AACTAGCTATGTTACCACTTTTCTTT 57.080 30.769 0.00 0.00 0.00 2.52
548 549 9.433153 GTAACTAGCTATGTTACCACTTTTCTT 57.567 33.333 22.55 0.80 42.06 2.52
549 550 8.813951 AGTAACTAGCTATGTTACCACTTTTCT 58.186 33.333 25.92 13.30 46.31 2.52
550 551 8.999220 AGTAACTAGCTATGTTACCACTTTTC 57.001 34.615 25.92 11.54 46.31 2.29
581 582 9.875691 GCCTTGATATGTATGATGTTACTCATA 57.124 33.333 2.12 2.12 37.13 2.15
582 583 8.377799 TGCCTTGATATGTATGATGTTACTCAT 58.622 33.333 3.62 3.62 39.22 2.90
583 584 7.734942 TGCCTTGATATGTATGATGTTACTCA 58.265 34.615 0.00 0.00 0.00 3.41
584 585 8.607441 TTGCCTTGATATGTATGATGTTACTC 57.393 34.615 0.00 0.00 0.00 2.59
585 586 8.432013 TCTTGCCTTGATATGTATGATGTTACT 58.568 33.333 0.00 0.00 0.00 2.24
586 587 8.607441 TCTTGCCTTGATATGTATGATGTTAC 57.393 34.615 0.00 0.00 0.00 2.50
587 588 9.223099 CATCTTGCCTTGATATGTATGATGTTA 57.777 33.333 0.00 0.00 0.00 2.41
588 589 7.940688 TCATCTTGCCTTGATATGTATGATGTT 59.059 33.333 0.00 0.00 32.21 2.71
589 590 7.455891 TCATCTTGCCTTGATATGTATGATGT 58.544 34.615 0.00 0.00 32.21 3.06
590 591 7.606839 ACTCATCTTGCCTTGATATGTATGATG 59.393 37.037 0.00 0.00 0.00 3.07
591 592 7.687388 ACTCATCTTGCCTTGATATGTATGAT 58.313 34.615 0.00 0.00 0.00 2.45
592 593 7.015974 AGACTCATCTTGCCTTGATATGTATGA 59.984 37.037 0.00 0.00 0.00 2.15
593 594 7.160049 AGACTCATCTTGCCTTGATATGTATG 58.840 38.462 0.00 0.00 0.00 2.39
594 595 7.313740 AGACTCATCTTGCCTTGATATGTAT 57.686 36.000 0.00 0.00 0.00 2.29
595 596 6.737720 AGACTCATCTTGCCTTGATATGTA 57.262 37.500 0.00 0.00 0.00 2.29
596 597 5.627182 AGACTCATCTTGCCTTGATATGT 57.373 39.130 0.00 0.00 0.00 2.29
597 598 8.530311 ACTATAGACTCATCTTGCCTTGATATG 58.470 37.037 6.78 0.00 36.29 1.78
598 599 8.663209 ACTATAGACTCATCTTGCCTTGATAT 57.337 34.615 6.78 0.00 36.29 1.63
599 600 7.947332 AGACTATAGACTCATCTTGCCTTGATA 59.053 37.037 6.78 0.00 36.29 2.15
600 601 6.782000 AGACTATAGACTCATCTTGCCTTGAT 59.218 38.462 6.78 0.00 36.29 2.57
601 602 6.132658 AGACTATAGACTCATCTTGCCTTGA 58.867 40.000 6.78 0.00 36.29 3.02
602 603 6.403866 AGACTATAGACTCATCTTGCCTTG 57.596 41.667 6.78 0.00 36.29 3.61
603 604 8.719645 ATTAGACTATAGACTCATCTTGCCTT 57.280 34.615 6.78 0.00 36.29 4.35
604 605 9.815306 TTATTAGACTATAGACTCATCTTGCCT 57.185 33.333 6.78 0.00 36.29 4.75
630 631 9.263446 TGTTACTACCCTCTATAACACTTCATT 57.737 33.333 0.00 0.00 33.67 2.57
631 632 8.834004 TGTTACTACCCTCTATAACACTTCAT 57.166 34.615 0.00 0.00 33.67 2.57
632 633 8.834004 ATGTTACTACCCTCTATAACACTTCA 57.166 34.615 0.00 0.00 39.61 3.02
635 636 9.571816 GTCTATGTTACTACCCTCTATAACACT 57.428 37.037 0.00 0.00 39.61 3.55
636 637 9.571816 AGTCTATGTTACTACCCTCTATAACAC 57.428 37.037 0.00 0.00 39.61 3.32
643 644 8.776119 TGTTACTAGTCTATGTTACTACCCTCT 58.224 37.037 0.00 0.00 0.00 3.69
644 645 8.970859 TGTTACTAGTCTATGTTACTACCCTC 57.029 38.462 0.00 0.00 0.00 4.30
672 673 9.976511 GGTAATAACATAGACTAGTAACATGCA 57.023 33.333 0.00 0.00 0.00 3.96
673 674 9.420551 GGGTAATAACATAGACTAGTAACATGC 57.579 37.037 0.00 0.00 0.00 4.06
680 681 8.429641 CCACAATGGGTAATAACATAGACTAGT 58.570 37.037 0.00 0.00 32.67 2.57
681 682 7.387948 GCCACAATGGGTAATAACATAGACTAG 59.612 40.741 0.00 0.00 38.19 2.57
682 683 7.221450 GCCACAATGGGTAATAACATAGACTA 58.779 38.462 0.00 0.00 38.19 2.59
683 684 6.062095 GCCACAATGGGTAATAACATAGACT 58.938 40.000 0.00 0.00 38.19 3.24
684 685 6.313744 GCCACAATGGGTAATAACATAGAC 57.686 41.667 0.00 0.00 38.19 2.59
697 698 3.914426 ACTTAGACTAGCCACAATGGG 57.086 47.619 0.00 0.00 38.19 4.00
698 699 3.865745 CGAACTTAGACTAGCCACAATGG 59.134 47.826 0.00 0.00 41.55 3.16
699 700 4.495422 ACGAACTTAGACTAGCCACAATG 58.505 43.478 0.00 0.00 0.00 2.82
700 701 4.803098 ACGAACTTAGACTAGCCACAAT 57.197 40.909 0.00 0.00 0.00 2.71
701 702 4.304110 CAACGAACTTAGACTAGCCACAA 58.696 43.478 0.00 0.00 0.00 3.33
702 703 3.859627 GCAACGAACTTAGACTAGCCACA 60.860 47.826 0.00 0.00 0.00 4.17
703 704 2.666994 GCAACGAACTTAGACTAGCCAC 59.333 50.000 0.00 0.00 0.00 5.01
704 705 2.297880 TGCAACGAACTTAGACTAGCCA 59.702 45.455 0.00 0.00 0.00 4.75
705 706 2.924290 CTGCAACGAACTTAGACTAGCC 59.076 50.000 0.00 0.00 0.00 3.93
706 707 3.608939 GTCTGCAACGAACTTAGACTAGC 59.391 47.826 0.00 0.00 35.93 3.42
707 708 4.167268 GGTCTGCAACGAACTTAGACTAG 58.833 47.826 0.00 0.00 38.22 2.57
708 709 3.570975 TGGTCTGCAACGAACTTAGACTA 59.429 43.478 0.00 0.00 38.22 2.59
709 710 2.364324 TGGTCTGCAACGAACTTAGACT 59.636 45.455 0.00 0.00 38.22 3.24
710 711 2.750948 TGGTCTGCAACGAACTTAGAC 58.249 47.619 0.00 0.00 37.60 2.59
711 712 3.069016 TCTTGGTCTGCAACGAACTTAGA 59.931 43.478 0.00 0.00 0.00 2.10
712 713 3.390135 TCTTGGTCTGCAACGAACTTAG 58.610 45.455 0.00 0.00 0.00 2.18
720 721 3.854784 GCACTGAAATCTTGGTCTGCAAC 60.855 47.826 0.00 0.00 0.00 4.17
721 722 2.294233 GCACTGAAATCTTGGTCTGCAA 59.706 45.455 0.00 0.00 0.00 4.08
726 727 1.464997 GTCCGCACTGAAATCTTGGTC 59.535 52.381 0.00 0.00 0.00 4.02
728 729 1.522668 TGTCCGCACTGAAATCTTGG 58.477 50.000 0.00 0.00 0.00 3.61
739 740 1.173043 TTGGATTTGGATGTCCGCAC 58.827 50.000 0.00 0.00 39.43 5.34
743 744 7.639113 TTAGTGTATTTGGATTTGGATGTCC 57.361 36.000 0.00 0.00 35.02 4.02
757 758 7.197071 TCGTGAATGCAGTTTTAGTGTATTT 57.803 32.000 0.00 0.00 34.67 1.40
759 760 6.649141 TCTTCGTGAATGCAGTTTTAGTGTAT 59.351 34.615 0.00 0.00 0.00 2.29
785 786 0.606944 ATGCGTTTACCTCGGCCAAA 60.607 50.000 2.24 0.00 0.00 3.28
972 993 0.176219 CGTGAGGTAAATGGGCGGTA 59.824 55.000 0.00 0.00 0.00 4.02
1461 1482 1.750399 GACCATCACGGCCAAGCAT 60.750 57.895 2.24 0.00 39.03 3.79
1757 1781 2.349060 GCGCGCATATTACGGAAATGAA 60.349 45.455 29.10 0.00 0.00 2.57
1766 1790 0.357894 CTACGACGCGCGCATATTAC 59.642 55.000 32.58 13.28 46.04 1.89
1848 1874 5.615925 AAGCTATTCCCGAATACAACTCT 57.384 39.130 0.00 0.00 32.50 3.24
1927 1956 3.090210 TCATGTCCATTCTGGCATTGT 57.910 42.857 0.00 0.00 37.47 2.71
1946 1975 8.770438 AATGTGACATCTAAGAGAGAACTTTC 57.230 34.615 0.00 0.00 37.85 2.62
1959 1988 8.690884 TCCTTCAAAAACAAAATGTGACATCTA 58.309 29.630 0.00 0.00 0.00 1.98
1979 2008 2.316867 CGCGCACACATGTCCTTCA 61.317 57.895 8.75 0.00 0.00 3.02
1980 2009 2.476051 CGCGCACACATGTCCTTC 59.524 61.111 8.75 0.00 0.00 3.46
1981 2010 3.726517 GCGCGCACACATGTCCTT 61.727 61.111 29.10 0.00 0.00 3.36
1999 2028 9.224267 TCATTATTTATTGGAGATGCTCTAAGC 57.776 33.333 0.00 0.00 42.82 3.09
2048 2077 0.909623 AATGTAAGACGTGGAGGGGG 59.090 55.000 0.00 0.00 0.00 5.40
2049 2078 5.245301 TCATATAATGTAAGACGTGGAGGGG 59.755 44.000 0.00 0.00 0.00 4.79
2050 2079 6.340962 TCATATAATGTAAGACGTGGAGGG 57.659 41.667 0.00 0.00 0.00 4.30
2051 2080 7.602753 TCATCATATAATGTAAGACGTGGAGG 58.397 38.462 0.00 0.00 0.00 4.30
2052 2081 9.133627 CTTCATCATATAATGTAAGACGTGGAG 57.866 37.037 0.00 0.00 0.00 3.86
2053 2082 8.856103 TCTTCATCATATAATGTAAGACGTGGA 58.144 33.333 0.00 0.00 0.00 4.02
2054 2083 9.476202 TTCTTCATCATATAATGTAAGACGTGG 57.524 33.333 0.00 0.00 30.04 4.94
2104 2133 2.443887 TTGAAGCAGCATTTTCTGGC 57.556 45.000 0.00 0.00 34.74 4.85
2105 2134 5.571784 TCTATTGAAGCAGCATTTTCTGG 57.428 39.130 0.00 0.00 34.74 3.86
2113 2142 7.118825 GCATCTACATTATCTATTGAAGCAGCA 59.881 37.037 0.00 0.00 0.00 4.41
2114 2143 7.118825 TGCATCTACATTATCTATTGAAGCAGC 59.881 37.037 0.00 0.00 0.00 5.25
2145 2174 8.107095 ACTTGGAGAAGCTGGTGTAATTTATTA 58.893 33.333 0.00 0.00 31.68 0.98
2151 2180 3.327757 TCACTTGGAGAAGCTGGTGTAAT 59.672 43.478 0.00 0.00 31.68 1.89
2152 2181 2.703536 TCACTTGGAGAAGCTGGTGTAA 59.296 45.455 0.00 0.00 31.68 2.41
2153 2182 2.325484 TCACTTGGAGAAGCTGGTGTA 58.675 47.619 0.00 0.00 31.68 2.90
2154 2183 1.131638 TCACTTGGAGAAGCTGGTGT 58.868 50.000 0.00 0.00 31.68 4.16
2155 2184 2.082231 CATCACTTGGAGAAGCTGGTG 58.918 52.381 0.00 0.00 31.68 4.17
2156 2185 1.701847 ACATCACTTGGAGAAGCTGGT 59.298 47.619 0.00 0.00 31.68 4.00
2157 2186 2.082231 CACATCACTTGGAGAAGCTGG 58.918 52.381 0.00 0.00 31.68 4.85
2160 2189 2.880890 ACAACACATCACTTGGAGAAGC 59.119 45.455 0.00 0.00 31.68 3.86
2163 2192 5.545063 TTCTACAACACATCACTTGGAGA 57.455 39.130 0.00 0.00 35.85 3.71
2164 2193 6.873605 TGTATTCTACAACACATCACTTGGAG 59.126 38.462 0.00 0.00 35.38 3.86
2166 2195 7.433708 TTGTATTCTACAACACATCACTTGG 57.566 36.000 0.00 0.00 43.23 3.61
2178 2207 6.371548 GCATCTCCAAGTGTTGTATTCTACAA 59.628 38.462 0.00 0.00 45.66 2.41
2179 2208 5.874810 GCATCTCCAAGTGTTGTATTCTACA 59.125 40.000 0.00 0.00 36.79 2.74
2180 2209 5.874810 TGCATCTCCAAGTGTTGTATTCTAC 59.125 40.000 0.00 0.00 0.00 2.59
2181 2210 6.048732 TGCATCTCCAAGTGTTGTATTCTA 57.951 37.500 0.00 0.00 0.00 2.10
2182 2211 4.910195 TGCATCTCCAAGTGTTGTATTCT 58.090 39.130 0.00 0.00 0.00 2.40
2183 2212 4.937620 TCTGCATCTCCAAGTGTTGTATTC 59.062 41.667 0.00 0.00 0.00 1.75
2205 2234 2.686915 CAAGGAGGTGGAGATGCAAATC 59.313 50.000 0.00 0.00 0.00 2.17
2224 2253 1.883275 CGGGCTGTTTTACATCACCAA 59.117 47.619 0.00 0.00 0.00 3.67
2225 2254 1.529226 CGGGCTGTTTTACATCACCA 58.471 50.000 0.00 0.00 0.00 4.17
2226 2255 0.170339 GCGGGCTGTTTTACATCACC 59.830 55.000 0.00 0.00 0.00 4.02
2246 2275 1.281353 GTTTGGACATTCGTGCGCA 59.719 52.632 5.66 5.66 35.97 6.09
2250 2279 0.385473 GTGGCGTTTGGACATTCGTG 60.385 55.000 0.00 0.00 34.91 4.35
2251 2280 0.534203 AGTGGCGTTTGGACATTCGT 60.534 50.000 0.00 0.00 34.91 3.85
2256 2285 1.686355 AATGAAGTGGCGTTTGGACA 58.314 45.000 0.00 0.00 0.00 4.02
2257 2286 2.034053 TGAAATGAAGTGGCGTTTGGAC 59.966 45.455 0.00 0.00 0.00 4.02
2258 2287 2.293122 CTGAAATGAAGTGGCGTTTGGA 59.707 45.455 0.00 0.00 0.00 3.53
2259 2288 2.034558 ACTGAAATGAAGTGGCGTTTGG 59.965 45.455 0.00 0.00 0.00 3.28
2263 2292 1.880027 GGAACTGAAATGAAGTGGCGT 59.120 47.619 0.00 0.00 0.00 5.68
2268 2297 2.504367 CGGGTGGAACTGAAATGAAGT 58.496 47.619 0.00 0.00 36.74 3.01
2327 2372 3.391382 GGGGTCACCGGAGTCAGG 61.391 72.222 9.46 7.88 37.78 3.86
2354 2399 1.153881 GGGTTAGACTGACGGCGAC 60.154 63.158 16.62 8.59 0.00 5.19
2355 2400 1.604308 TGGGTTAGACTGACGGCGA 60.604 57.895 16.62 0.00 0.00 5.54
2361 2406 1.255667 GGCGAGGTGGGTTAGACTGA 61.256 60.000 0.00 0.00 0.00 3.41
2389 2434 3.879351 GAAGGTGGTTGCGCTTGCG 62.879 63.158 9.73 10.90 43.34 4.85
2390 2435 2.050077 GAAGGTGGTTGCGCTTGC 60.050 61.111 9.73 0.00 39.78 4.01
2391 2436 1.008538 GTGAAGGTGGTTGCGCTTG 60.009 57.895 9.73 0.00 0.00 4.01
2392 2437 2.193536 GGTGAAGGTGGTTGCGCTT 61.194 57.895 9.73 0.00 0.00 4.68
2393 2438 2.594592 GGTGAAGGTGGTTGCGCT 60.595 61.111 9.73 0.00 0.00 5.92
2445 2490 4.169696 TGTTCCCATAGCGGCGGG 62.170 66.667 9.78 5.17 44.60 6.13
2446 2491 2.588877 CTGTTCCCATAGCGGCGG 60.589 66.667 9.78 0.00 0.00 6.13
2447 2492 2.588877 CCTGTTCCCATAGCGGCG 60.589 66.667 0.51 0.51 0.00 6.46
2450 2495 2.173669 CGCACCTGTTCCCATAGCG 61.174 63.158 0.00 0.00 37.68 4.26
2451 2496 2.472909 GCGCACCTGTTCCCATAGC 61.473 63.158 0.30 0.00 0.00 2.97
2453 2498 2.270850 GGCGCACCTGTTCCCATA 59.729 61.111 10.83 0.00 0.00 2.74
2476 2539 3.843240 GCCGCGACAGCTTCTTCG 61.843 66.667 8.23 5.03 42.32 3.79
2485 2548 4.745751 CGGGTTTAGGCCGCGACA 62.746 66.667 8.23 0.00 0.00 4.35
2493 2556 2.125269 CTCCACCGCGGGTTTAGG 60.125 66.667 31.76 21.51 31.02 2.69
2495 2558 2.924101 ACCTCCACCGCGGGTTTA 60.924 61.111 31.76 10.90 31.02 2.01
2539 2603 2.279451 CGAGATGGATTCGCCGCA 60.279 61.111 0.00 0.00 40.66 5.69
2540 2604 2.018866 CTCGAGATGGATTCGCCGC 61.019 63.158 6.58 0.00 40.66 6.53
2543 2607 2.018866 CCGCTCGAGATGGATTCGC 61.019 63.158 18.75 0.00 37.94 4.70
2544 2608 2.018866 GCCGCTCGAGATGGATTCG 61.019 63.158 23.71 12.67 39.33 3.34
2576 2643 3.482783 GACTGAAGCAGCCGCGAC 61.483 66.667 8.23 0.00 45.49 5.19
2580 2647 1.746727 CGAATCGACTGAAGCAGCCG 61.747 60.000 0.00 0.00 38.62 5.52
2590 2657 4.814294 GGCGGTGGCGAATCGACT 62.814 66.667 10.78 0.00 41.24 4.18
2615 2704 1.990614 GGTGGTGGAGGAGGAGGTC 60.991 68.421 0.00 0.00 0.00 3.85
2625 2714 3.897122 GGGGCTTGTGGTGGTGGA 61.897 66.667 0.00 0.00 0.00 4.02
2679 2768 2.203294 ACGTTGGAGGTGGTTGCC 60.203 61.111 0.00 0.00 0.00 4.52
2680 2769 3.030652 CACGTTGGAGGTGGTTGC 58.969 61.111 0.00 0.00 30.93 4.17
2682 2771 1.227853 GAGCACGTTGGAGGTGGTT 60.228 57.895 6.87 0.00 43.53 3.67
2686 2775 2.338984 GTCGAGCACGTTGGAGGT 59.661 61.111 2.86 0.00 40.69 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.