Multiple sequence alignment - TraesCS1D01G127200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G127200 chr1D 100.000 8636 0 0 1 8636 139544358 139535723 0.000000e+00 15948.0
1 TraesCS1D01G127200 chr1D 88.704 301 27 5 1962 2259 71016440 71016144 2.290000e-95 361.0
2 TraesCS1D01G127200 chr1D 88.732 284 27 5 2489 2769 71013600 71013319 8.300000e-90 342.0
3 TraesCS1D01G127200 chr1D 90.909 209 13 5 4994 5199 106242695 106242900 8.540000e-70 276.0
4 TraesCS1D01G127200 chr1D 85.892 241 26 5 1616 1850 71022101 71021863 5.180000e-62 250.0
5 TraesCS1D01G127200 chr1D 88.482 191 19 1 2259 2449 71015582 71015395 2.430000e-55 228.0
6 TraesCS1D01G127200 chr1D 100.000 37 0 0 2439 2475 71015385 71015349 1.560000e-07 69.4
7 TraesCS1D01G127200 chr1B 96.550 3449 82 10 5195 8636 199573331 199576749 0.000000e+00 5675.0
8 TraesCS1D01G127200 chr1B 95.143 2244 76 14 2771 4988 199571118 199573354 0.000000e+00 3509.0
9 TraesCS1D01G127200 chr1B 92.967 1237 73 7 389 1616 199569887 199571118 0.000000e+00 1790.0
10 TraesCS1D01G127200 chr1B 90.654 749 63 4 389 1134 199549111 199549855 0.000000e+00 989.0
11 TraesCS1D01G127200 chr1B 87.896 347 33 3 1616 1953 682166254 682165908 4.860000e-107 399.0
12 TraesCS1D01G127200 chr1B 93.814 194 10 1 5006 5199 161204686 161204495 3.050000e-74 291.0
13 TraesCS1D01G127200 chr1B 91.000 200 17 1 5001 5199 374320948 374320749 1.430000e-67 268.0
14 TraesCS1D01G127200 chr1B 83.566 286 38 5 2497 2774 682164808 682164524 8.600000e-65 259.0
15 TraesCS1D01G127200 chr1B 95.918 49 0 1 4788 4836 199573115 199573161 2.580000e-10 78.7
16 TraesCS1D01G127200 chr1B 93.878 49 3 0 4788 4836 60062631 60062679 3.340000e-09 75.0
17 TraesCS1D01G127200 chr1A 97.774 3010 61 4 5224 8228 151774325 151777333 0.000000e+00 5182.0
18 TraesCS1D01G127200 chr1A 95.142 1441 49 10 2771 4200 151771910 151773340 0.000000e+00 2254.0
19 TraesCS1D01G127200 chr1A 90.733 1651 110 12 1 1616 151770268 151771910 0.000000e+00 2161.0
20 TraesCS1D01G127200 chr1A 84.628 618 85 5 116 724 572682260 572681644 2.670000e-169 606.0
21 TraesCS1D01G127200 chr1A 92.453 371 16 1 4309 4667 151773340 151773710 3.570000e-143 520.0
22 TraesCS1D01G127200 chr1A 92.812 320 14 3 8324 8634 151777378 151777697 1.020000e-123 455.0
23 TraesCS1D01G127200 chr1A 91.667 300 21 2 2178 2473 583153539 583153240 6.240000e-111 412.0
24 TraesCS1D01G127200 chr1A 95.192 208 10 0 4989 5196 67827807 67828014 6.460000e-86 329.0
25 TraesCS1D01G127200 chr1A 85.780 218 21 6 1615 1822 583153757 583153540 1.130000e-53 222.0
26 TraesCS1D01G127200 chr1A 94.444 126 4 3 4866 4988 151774154 151774279 3.180000e-44 191.0
27 TraesCS1D01G127200 chr1A 91.667 132 7 3 4994 5125 107102726 107102599 6.890000e-41 180.0
28 TraesCS1D01G127200 chr1A 100.000 32 0 0 8299 8330 151777337 151777368 9.360000e-05 60.2
29 TraesCS1D01G127200 chr3D 93.776 723 26 3 1962 2682 42401031 42401736 0.000000e+00 1068.0
30 TraesCS1D01G127200 chr3D 96.353 329 9 2 1627 1954 42400365 42400691 9.860000e-149 538.0
31 TraesCS1D01G127200 chr6D 84.743 603 84 6 116 712 428978819 428978219 1.600000e-166 597.0
32 TraesCS1D01G127200 chr7B 83.515 643 94 11 116 749 104298958 104298319 2.690000e-164 590.0
33 TraesCS1D01G127200 chr7B 87.500 72 9 0 3642 3713 27063238 27063309 5.560000e-12 84.2
34 TraesCS1D01G127200 chr6A 83.871 620 87 10 116 725 573641912 573641296 5.810000e-161 579.0
35 TraesCS1D01G127200 chr6A 95.210 167 8 0 5000 5166 9480839 9480673 1.850000e-66 265.0
36 TraesCS1D01G127200 chr2A 83.360 631 96 6 116 737 765574496 765573866 7.520000e-160 575.0
37 TraesCS1D01G127200 chr2A 84.635 397 38 13 1962 2351 424285991 424285611 2.940000e-99 374.0
38 TraesCS1D01G127200 chr7A 82.992 635 96 9 120 745 81145499 81146130 1.630000e-156 564.0
39 TraesCS1D01G127200 chr7A 87.675 357 34 5 1606 1953 617913952 617914307 2.900000e-109 407.0
40 TraesCS1D01G127200 chr7A 83.158 285 39 5 2494 2770 617915468 617915751 1.440000e-62 252.0
41 TraesCS1D01G127200 chr7A 90.722 97 7 2 2677 2772 375510171 375510266 2.530000e-25 128.0
42 TraesCS1D01G127200 chr5A 87.896 347 33 3 1616 1953 548775846 548775500 4.860000e-107 399.0
43 TraesCS1D01G127200 chr5A 87.896 347 33 5 1616 1953 658505832 658505486 4.860000e-107 399.0
44 TraesCS1D01G127200 chr5A 87.032 347 36 5 1616 1953 658504822 658504476 4.890000e-102 383.0
45 TraesCS1D01G127200 chr5A 84.155 284 36 5 2497 2772 548774335 548774053 5.140000e-67 267.0
46 TraesCS1D01G127200 chr5A 84.155 284 36 5 2497 2772 658503312 658503030 5.140000e-67 267.0
47 TraesCS1D01G127200 chr3A 87.608 347 34 4 1616 1953 355269129 355269475 2.260000e-105 394.0
48 TraesCS1D01G127200 chr3A 83.624 287 38 5 2494 2772 355270636 355270921 2.390000e-65 261.0
49 TraesCS1D01G127200 chr4B 93.659 205 9 2 4990 5190 73265932 73266136 3.920000e-78 303.0
50 TraesCS1D01G127200 chr4B 89.720 214 19 2 4989 5202 645076889 645076679 3.970000e-68 270.0
51 TraesCS1D01G127200 chrUn 97.794 136 3 0 5070 5205 17585272 17585407 1.450000e-57 235.0
52 TraesCS1D01G127200 chr3B 87.435 191 21 3 5011 5199 764108386 764108575 5.250000e-52 217.0
53 TraesCS1D01G127200 chr3B 88.571 105 7 3 2669 2772 230489580 230489680 1.180000e-23 122.0
54 TraesCS1D01G127200 chr6B 87.156 109 8 4 2669 2775 221411458 221411562 1.520000e-22 119.0
55 TraesCS1D01G127200 chr6B 95.556 45 2 0 4792 4836 163547585 163547541 1.200000e-08 73.1
56 TraesCS1D01G127200 chr5D 81.081 111 16 4 4788 4896 351472603 351472496 5.560000e-12 84.2
57 TraesCS1D01G127200 chr2B 89.796 49 4 1 4788 4836 736912425 736912472 2.600000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G127200 chr1D 139535723 139544358 8635 True 15948.000000 15948 100.000000 1 8636 1 chr1D.!!$R2 8635
1 TraesCS1D01G127200 chr1D 71013319 71016440 3121 True 250.100000 361 91.479500 1962 2769 4 chr1D.!!$R3 807
2 TraesCS1D01G127200 chr1B 199569887 199576749 6862 False 2763.175000 5675 95.144500 389 8636 4 chr1B.!!$F3 8247
3 TraesCS1D01G127200 chr1B 199549111 199549855 744 False 989.000000 989 90.654000 389 1134 1 chr1B.!!$F2 745
4 TraesCS1D01G127200 chr1B 682164524 682166254 1730 True 329.000000 399 85.731000 1616 2774 2 chr1B.!!$R3 1158
5 TraesCS1D01G127200 chr1A 151770268 151777697 7429 False 1546.171429 5182 94.765429 1 8634 7 chr1A.!!$F2 8633
6 TraesCS1D01G127200 chr1A 572681644 572682260 616 True 606.000000 606 84.628000 116 724 1 chr1A.!!$R2 608
7 TraesCS1D01G127200 chr1A 583153240 583153757 517 True 317.000000 412 88.723500 1615 2473 2 chr1A.!!$R3 858
8 TraesCS1D01G127200 chr3D 42400365 42401736 1371 False 803.000000 1068 95.064500 1627 2682 2 chr3D.!!$F1 1055
9 TraesCS1D01G127200 chr6D 428978219 428978819 600 True 597.000000 597 84.743000 116 712 1 chr6D.!!$R1 596
10 TraesCS1D01G127200 chr7B 104298319 104298958 639 True 590.000000 590 83.515000 116 749 1 chr7B.!!$R1 633
11 TraesCS1D01G127200 chr6A 573641296 573641912 616 True 579.000000 579 83.871000 116 725 1 chr6A.!!$R2 609
12 TraesCS1D01G127200 chr2A 765573866 765574496 630 True 575.000000 575 83.360000 116 737 1 chr2A.!!$R2 621
13 TraesCS1D01G127200 chr7A 81145499 81146130 631 False 564.000000 564 82.992000 120 745 1 chr7A.!!$F1 625
14 TraesCS1D01G127200 chr7A 617913952 617915751 1799 False 329.500000 407 85.416500 1606 2770 2 chr7A.!!$F3 1164
15 TraesCS1D01G127200 chr5A 658503030 658505832 2802 True 349.666667 399 86.361000 1616 2772 3 chr5A.!!$R2 1156
16 TraesCS1D01G127200 chr5A 548774053 548775846 1793 True 333.000000 399 86.025500 1616 2772 2 chr5A.!!$R1 1156
17 TraesCS1D01G127200 chr3A 355269129 355270921 1792 False 327.500000 394 85.616000 1616 2772 2 chr3A.!!$F1 1156

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
552 587 0.450983 CGACTTCCGGACTGTCTACC 59.549 60.000 25.19 8.45 33.91 3.18 F
601 637 0.676184 GATAGAGGATGACAGCGGCA 59.324 55.000 1.45 0.00 0.00 5.69 F
625 661 1.126846 CTTCGGCTCGCTTTAGTGTTG 59.873 52.381 0.00 0.00 0.00 3.33 F
2506 6263 0.756294 TCTTCGTGCTGGACCAAAGA 59.244 50.000 0.00 0.00 0.00 2.52 F
2672 6436 1.111277 TCGATGTGGATGGATGACGT 58.889 50.000 0.00 0.00 0.00 4.34 F
4612 8401 2.169769 TCCACTAATAACAAGAGGGCCG 59.830 50.000 0.00 0.00 0.00 6.13 F
5145 9223 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34 F
5181 9259 0.179073 CTGGGACCGGCTATGTTGAG 60.179 60.000 0.00 0.00 0.00 3.02 F
5183 9261 0.179081 GGGACCGGCTATGTTGAGAC 60.179 60.000 0.00 0.00 0.00 3.36 F
5184 9262 0.535335 GGACCGGCTATGTTGAGACA 59.465 55.000 0.00 0.00 40.71 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2144 3559 1.546476 TGTCTGGCCAAAACGTGTTTT 59.454 42.857 7.01 4.93 42.91 2.43 R
2398 4376 4.748701 TGTTCTTCCCTACTCTACCTTGT 58.251 43.478 0.00 0.00 0.00 3.16 R
2672 6436 3.696051 ACGCGAGGTGGTACTAATTCTTA 59.304 43.478 15.93 0.00 0.00 2.10 R
4217 7994 1.196127 GCAGCTTACAACCGGTTACAC 59.804 52.381 21.79 8.16 0.00 2.90 R
4698 8570 2.431454 TGGATAACTCATGCGCAACAA 58.569 42.857 17.11 1.12 0.00 2.83 R
5973 10092 1.831580 AATCCTTTGAGACTGCCAGC 58.168 50.000 0.00 0.00 0.00 4.85 R
7093 11214 1.357137 TACCCTGCAACATCCAGACA 58.643 50.000 0.00 0.00 32.03 3.41 R
7225 11346 6.149973 CCTCTGTGATTCTATGCAGAACAAAA 59.850 38.462 0.00 0.00 43.50 2.44 R
7232 11353 4.040095 TGGATCCTCTGTGATTCTATGCAG 59.960 45.833 14.23 0.00 0.00 4.41 R
7666 11788 8.773404 TGTTAGTTAACCTTTCTCATCTTAGC 57.227 34.615 0.88 0.00 35.37 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.349155 CGTCCTGAAAAACCTAACGTGC 60.349 50.000 0.00 0.00 0.00 5.34
31 32 0.946528 GAAAAACCTAACGTGCGGGT 59.053 50.000 8.11 5.14 34.47 5.28
38 39 1.093159 CTAACGTGCGGGTCTAGACT 58.907 55.000 21.88 2.68 0.00 3.24
41 42 0.892358 ACGTGCGGGTCTAGACTTGA 60.892 55.000 21.88 1.97 0.00 3.02
70 71 4.091453 ACAAAAGGTTCAGTTTGTGTCG 57.909 40.909 1.23 0.00 44.24 4.35
81 82 6.462073 TCAGTTTGTGTCGTTTTATCTAGC 57.538 37.500 0.00 0.00 0.00 3.42
86 87 8.033038 AGTTTGTGTCGTTTTATCTAGCTATCA 58.967 33.333 0.00 0.00 0.00 2.15
99 100 5.171476 TCTAGCTATCAGTCAAAAGTGTGC 58.829 41.667 0.00 0.00 0.00 4.57
271 298 5.479027 AGTTTTGTTAGGTTTTGTGTCCTGT 59.521 36.000 0.00 0.00 35.51 4.00
300 333 2.031616 AGACGACGACGACTCCCA 59.968 61.111 15.32 0.00 39.90 4.37
399 433 3.017442 TGTCTCTAACGGATCTGTCCTG 58.983 50.000 7.86 1.61 42.73 3.86
419 453 3.114606 TGGGTGGATTTGCTCAGATCTA 58.885 45.455 0.00 0.00 0.00 1.98
472 506 5.839063 TCAGGTTGGATATTTCCGATCTACT 59.161 40.000 4.99 0.00 44.03 2.57
541 576 1.859080 GCCTTAGCATAACGACTTCCG 59.141 52.381 0.00 0.00 41.08 4.30
552 587 0.450983 CGACTTCCGGACTGTCTACC 59.549 60.000 25.19 8.45 33.91 3.18
554 589 2.100989 GACTTCCGGACTGTCTACCAT 58.899 52.381 22.55 0.00 0.00 3.55
595 631 1.621992 GCGAGGGATAGAGGATGACA 58.378 55.000 0.00 0.00 0.00 3.58
601 637 0.676184 GATAGAGGATGACAGCGGCA 59.324 55.000 1.45 0.00 0.00 5.69
625 661 1.126846 CTTCGGCTCGCTTTAGTGTTG 59.873 52.381 0.00 0.00 0.00 3.33
663 702 4.452455 GCGGTTTATGGATCTGGATGTAAG 59.548 45.833 0.00 0.00 0.00 2.34
801 849 3.326747 AGAACAGCGTGTCACTTTATCC 58.673 45.455 0.65 0.00 0.00 2.59
807 855 4.072131 AGCGTGTCACTTTATCCAATTGT 58.928 39.130 4.43 0.00 0.00 2.71
1314 1369 4.323257 CGGATCTGTGGGTTTACCTACTTT 60.323 45.833 15.23 2.00 46.36 2.66
1332 1387 1.568504 TTCCGTAGAGGTGCTGGAAT 58.431 50.000 0.00 0.00 41.99 3.01
1431 1486 8.398665 GCTAAGTTAAATGAATGAAGTGGTAGG 58.601 37.037 0.00 0.00 0.00 3.18
1499 1554 7.934120 GGTATATATTGCCCTAATCATCTCCAC 59.066 40.741 0.00 0.00 0.00 4.02
1533 1588 5.025453 ACCCTAAAAGAATCACATGGCATT 58.975 37.500 0.00 0.00 0.00 3.56
1597 1652 4.423732 CCAGTTAATTGAATCAAAGCGGG 58.576 43.478 0.00 0.00 0.00 6.13
1611 1666 5.553123 TCAAAGCGGGAACATCTTTAGTTA 58.447 37.500 0.00 0.00 33.28 2.24
1682 1745 9.486497 GATGCTCTCAATTATCATAACTCAAGA 57.514 33.333 0.00 0.00 0.00 3.02
1717 1782 2.027469 GGGTCCTCTATTTCAACACGGT 60.027 50.000 0.00 0.00 0.00 4.83
1720 1785 2.037902 TCCTCTATTTCAACACGGTGCA 59.962 45.455 8.30 0.00 0.00 4.57
1954 2020 3.567478 AATCCATACACCCTCTCTTGC 57.433 47.619 0.00 0.00 0.00 4.01
1957 2023 1.645034 CATACACCCTCTCTTGCACG 58.355 55.000 0.00 0.00 0.00 5.34
1958 2024 1.204704 CATACACCCTCTCTTGCACGA 59.795 52.381 0.00 0.00 0.00 4.35
1959 2025 1.557099 TACACCCTCTCTTGCACGAT 58.443 50.000 0.00 0.00 0.00 3.73
1960 2026 1.557099 ACACCCTCTCTTGCACGATA 58.443 50.000 0.00 0.00 0.00 2.92
2144 3559 8.946085 AGATTCATTCAGCTACGTGAATTTTTA 58.054 29.630 16.19 0.00 43.29 1.52
2150 3565 7.901874 TCAGCTACGTGAATTTTTAAAACAC 57.098 32.000 0.00 5.24 0.00 3.32
2506 6263 0.756294 TCTTCGTGCTGGACCAAAGA 59.244 50.000 0.00 0.00 0.00 2.52
2672 6436 1.111277 TCGATGTGGATGGATGACGT 58.889 50.000 0.00 0.00 0.00 4.34
2701 6465 6.875948 TTAGTACCACCTCGCGTATAATAA 57.124 37.500 5.77 0.00 0.00 1.40
2702 6466 5.972107 AGTACCACCTCGCGTATAATAAT 57.028 39.130 5.77 0.00 0.00 1.28
2923 6688 8.939932 CCTCTAGAGGTAGGAATTTAAGGAAAT 58.060 37.037 28.12 0.00 43.61 2.17
3031 6806 4.455877 GGCAGGCTGGTTGTATGTAATATC 59.544 45.833 17.64 0.00 0.00 1.63
3063 6838 7.341256 ACTGCATGAAATTAACCAAGATCATCT 59.659 33.333 0.00 0.00 0.00 2.90
3301 7077 9.790344 CATTTGATAAAGGAGATAAGACATCCT 57.210 33.333 0.00 0.00 45.50 3.24
3359 7135 3.466836 TGTTCCAACATCTCGATATGGC 58.533 45.455 14.50 0.18 33.17 4.40
3678 7455 2.742053 CACTTAATTGTGCTAGGCGTGT 59.258 45.455 0.00 0.00 0.00 4.49
3724 7501 7.873195 AGGTAGAGGCAAAACTAGGAATTTAT 58.127 34.615 0.00 0.00 0.00 1.40
3892 7669 7.148902 CGATTATGTTCTAACATCTCGACATGG 60.149 40.741 23.05 5.79 46.10 3.66
4022 7799 8.485591 GTTGTTTATATTGAGCTCACGGTATAC 58.514 37.037 18.03 13.71 0.00 1.47
4217 7994 5.121298 CGTATGTTGGATGAATCTGCCTATG 59.879 44.000 0.00 0.00 0.00 2.23
4278 8055 9.546909 CTCATTAATTTGTCCATATACGAATGC 57.453 33.333 0.00 0.00 34.38 3.56
4401 8190 6.249192 TGGTGATTACATTTGGTGGAATACA 58.751 36.000 0.00 0.00 41.56 2.29
4486 8275 5.863935 GCTAGCGTCTTTTCCATCAATTTTT 59.136 36.000 0.00 0.00 0.00 1.94
4538 8327 9.293404 GTGACTGGTGTAGGTATAGTTATGATA 57.707 37.037 0.00 0.00 0.00 2.15
4556 8345 4.598022 TGATAACCATGGCTGTGATTTGA 58.402 39.130 13.04 0.00 0.00 2.69
4612 8401 2.169769 TCCACTAATAACAAGAGGGCCG 59.830 50.000 0.00 0.00 0.00 6.13
4613 8402 2.561569 CACTAATAACAAGAGGGCCGG 58.438 52.381 0.00 0.00 0.00 6.13
4698 8570 3.067106 CCTGTCGTAGAAGTGCAAACAT 58.933 45.455 0.00 0.00 39.69 2.71
4740 8612 4.535526 AATTTGGCTGTTTGTATCACCC 57.464 40.909 0.00 0.00 0.00 4.61
4768 8640 1.710244 TGTGTGGAATGGGGTCTGATT 59.290 47.619 0.00 0.00 0.00 2.57
4865 8737 3.497031 GCCCGAGCACCGTTAAGC 61.497 66.667 0.00 0.00 39.53 3.09
4970 9048 6.126863 AGGGAGCATATTTATCCGAATTCA 57.873 37.500 6.22 0.00 33.68 2.57
4971 9049 5.940470 AGGGAGCATATTTATCCGAATTCAC 59.060 40.000 6.22 0.00 33.68 3.18
4972 9050 5.705441 GGGAGCATATTTATCCGAATTCACA 59.295 40.000 6.22 0.00 33.68 3.58
4973 9051 6.375455 GGGAGCATATTTATCCGAATTCACAT 59.625 38.462 6.22 0.00 33.68 3.21
4974 9052 7.414540 GGGAGCATATTTATCCGAATTCACATC 60.415 40.741 6.22 0.00 33.68 3.06
4975 9053 7.119699 GGAGCATATTTATCCGAATTCACATCA 59.880 37.037 6.22 0.00 0.00 3.07
4976 9054 8.037382 AGCATATTTATCCGAATTCACATCAG 57.963 34.615 6.22 0.00 0.00 2.90
4977 9055 7.663081 AGCATATTTATCCGAATTCACATCAGT 59.337 33.333 6.22 0.00 0.00 3.41
4978 9056 8.292448 GCATATTTATCCGAATTCACATCAGTT 58.708 33.333 6.22 0.00 0.00 3.16
4981 9059 7.921786 TTTATCCGAATTCACATCAGTTTCT 57.078 32.000 6.22 0.00 0.00 2.52
4982 9060 7.921786 TTATCCGAATTCACATCAGTTTCTT 57.078 32.000 6.22 0.00 0.00 2.52
4983 9061 6.824305 ATCCGAATTCACATCAGTTTCTTT 57.176 33.333 6.22 0.00 0.00 2.52
4984 9062 6.241207 TCCGAATTCACATCAGTTTCTTTC 57.759 37.500 6.22 0.00 0.00 2.62
4985 9063 5.181245 TCCGAATTCACATCAGTTTCTTTCC 59.819 40.000 6.22 0.00 0.00 3.13
4986 9064 5.182001 CCGAATTCACATCAGTTTCTTTCCT 59.818 40.000 6.22 0.00 0.00 3.36
4987 9065 6.294176 CCGAATTCACATCAGTTTCTTTCCTT 60.294 38.462 6.22 0.00 0.00 3.36
4988 9066 7.094805 CCGAATTCACATCAGTTTCTTTCCTTA 60.095 37.037 6.22 0.00 0.00 2.69
4989 9067 8.289618 CGAATTCACATCAGTTTCTTTCCTTAA 58.710 33.333 6.22 0.00 0.00 1.85
4990 9068 9.965824 GAATTCACATCAGTTTCTTTCCTTAAA 57.034 29.630 0.00 0.00 0.00 1.52
4991 9069 9.750125 AATTCACATCAGTTTCTTTCCTTAAAC 57.250 29.630 0.00 0.00 36.13 2.01
4992 9070 7.873719 TCACATCAGTTTCTTTCCTTAAACA 57.126 32.000 0.00 0.00 37.92 2.83
4993 9071 8.287439 TCACATCAGTTTCTTTCCTTAAACAA 57.713 30.769 0.00 0.00 37.92 2.83
4994 9072 8.188139 TCACATCAGTTTCTTTCCTTAAACAAC 58.812 33.333 0.00 0.00 37.92 3.32
4995 9073 7.973388 CACATCAGTTTCTTTCCTTAAACAACA 59.027 33.333 0.00 0.00 37.92 3.33
4996 9074 8.527810 ACATCAGTTTCTTTCCTTAAACAACAA 58.472 29.630 0.00 0.00 37.92 2.83
4997 9075 8.807581 CATCAGTTTCTTTCCTTAAACAACAAC 58.192 33.333 0.00 0.00 37.92 3.32
4998 9076 7.887381 TCAGTTTCTTTCCTTAAACAACAACA 58.113 30.769 0.00 0.00 37.92 3.33
4999 9077 8.361139 TCAGTTTCTTTCCTTAAACAACAACAA 58.639 29.630 0.00 0.00 37.92 2.83
5000 9078 8.432359 CAGTTTCTTTCCTTAAACAACAACAAC 58.568 33.333 0.00 0.00 37.92 3.32
5001 9079 8.145122 AGTTTCTTTCCTTAAACAACAACAACA 58.855 29.630 0.00 0.00 37.92 3.33
5002 9080 8.766151 GTTTCTTTCCTTAAACAACAACAACAA 58.234 29.630 0.00 0.00 35.98 2.83
5003 9081 7.876896 TCTTTCCTTAAACAACAACAACAAC 57.123 32.000 0.00 0.00 0.00 3.32
5004 9082 7.434492 TCTTTCCTTAAACAACAACAACAACA 58.566 30.769 0.00 0.00 0.00 3.33
5005 9083 7.926555 TCTTTCCTTAAACAACAACAACAACAA 59.073 29.630 0.00 0.00 0.00 2.83
5006 9084 7.409465 TTCCTTAAACAACAACAACAACAAC 57.591 32.000 0.00 0.00 0.00 3.32
5007 9085 6.513180 TCCTTAAACAACAACAACAACAACA 58.487 32.000 0.00 0.00 0.00 3.33
5008 9086 6.984474 TCCTTAAACAACAACAACAACAACAA 59.016 30.769 0.00 0.00 0.00 2.83
5009 9087 7.042658 TCCTTAAACAACAACAACAACAACAAC 60.043 33.333 0.00 0.00 0.00 3.32
5010 9088 7.254455 CCTTAAACAACAACAACAACAACAACA 60.254 33.333 0.00 0.00 0.00 3.33
5011 9089 6.422776 AAACAACAACAACAACAACAACAA 57.577 29.167 0.00 0.00 0.00 2.83
5012 9090 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
5013 9091 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
5014 9092 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
5015 9093 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
5016 9094 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
5017 9095 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
5018 9096 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
5019 9097 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
5020 9098 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
5021 9099 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
5022 9100 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
5023 9101 5.407084 ACAACAACAACAACAAAGCCTTTAC 59.593 36.000 0.00 0.00 0.00 2.01
5024 9102 5.400066 ACAACAACAACAAAGCCTTTACT 57.600 34.783 0.00 0.00 0.00 2.24
5025 9103 5.407502 ACAACAACAACAAAGCCTTTACTC 58.592 37.500 0.00 0.00 0.00 2.59
5026 9104 4.649088 ACAACAACAAAGCCTTTACTCC 57.351 40.909 0.00 0.00 0.00 3.85
5027 9105 3.383505 ACAACAACAAAGCCTTTACTCCC 59.616 43.478 0.00 0.00 0.00 4.30
5028 9106 3.306472 ACAACAAAGCCTTTACTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
5029 9107 3.637769 ACAACAAAGCCTTTACTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
5030 9108 4.027437 ACAACAAAGCCTTTACTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
5031 9109 4.142026 ACAACAAAGCCTTTACTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
5032 9110 3.637769 ACAAAGCCTTTACTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
5033 9111 4.027437 ACAAAGCCTTTACTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
5034 9112 4.099419 ACAAAGCCTTTACTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
5035 9113 3.595190 AGCCTTTACTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
5036 9114 3.910989 AGCCTTTACTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
5037 9115 3.636764 AGCCTTTACTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
5046 9124 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
5047 9125 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
5048 9126 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
5049 9127 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
5050 9128 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
5051 9129 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
5052 9130 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
5053 9131 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
5054 9132 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
5055 9133 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
5056 9134 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
5057 9135 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
5075 9153 7.605410 GTGAAACCCATAAGATCTAACGAAA 57.395 36.000 0.00 0.00 0.00 3.46
5076 9154 8.036273 GTGAAACCCATAAGATCTAACGAAAA 57.964 34.615 0.00 0.00 0.00 2.29
5077 9155 8.674607 GTGAAACCCATAAGATCTAACGAAAAT 58.325 33.333 0.00 0.00 0.00 1.82
5078 9156 8.889717 TGAAACCCATAAGATCTAACGAAAATC 58.110 33.333 0.00 0.00 0.00 2.17
5079 9157 9.110502 GAAACCCATAAGATCTAACGAAAATCT 57.889 33.333 0.00 0.00 0.00 2.40
5080 9158 9.462606 AAACCCATAAGATCTAACGAAAATCTT 57.537 29.630 0.00 0.93 41.40 2.40
5081 9159 9.462606 AACCCATAAGATCTAACGAAAATCTTT 57.537 29.630 0.00 0.00 39.70 2.52
5082 9160 9.462606 ACCCATAAGATCTAACGAAAATCTTTT 57.537 29.630 0.00 0.00 39.70 2.27
5083 9161 9.722056 CCCATAAGATCTAACGAAAATCTTTTG 57.278 33.333 0.00 11.82 39.70 2.44
5084 9162 9.722056 CCATAAGATCTAACGAAAATCTTTTGG 57.278 33.333 18.64 18.64 44.55 3.28
5085 9163 9.722056 CATAAGATCTAACGAAAATCTTTTGGG 57.278 33.333 0.00 0.00 39.70 4.12
5086 9164 7.761038 AAGATCTAACGAAAATCTTTTGGGT 57.239 32.000 0.00 0.00 36.58 4.51
5087 9165 7.761038 AGATCTAACGAAAATCTTTTGGGTT 57.239 32.000 0.00 5.10 31.27 4.11
5088 9166 8.178313 AGATCTAACGAAAATCTTTTGGGTTT 57.822 30.769 0.00 0.00 31.27 3.27
5089 9167 8.297426 AGATCTAACGAAAATCTTTTGGGTTTC 58.703 33.333 0.00 0.00 31.27 2.78
5090 9168 7.336161 TCTAACGAAAATCTTTTGGGTTTCA 57.664 32.000 0.00 0.00 31.27 2.69
5091 9169 7.947282 TCTAACGAAAATCTTTTGGGTTTCAT 58.053 30.769 0.00 0.00 31.27 2.57
5092 9170 8.079809 TCTAACGAAAATCTTTTGGGTTTCATC 58.920 33.333 0.00 0.00 31.27 2.92
5093 9171 6.405278 ACGAAAATCTTTTGGGTTTCATCT 57.595 33.333 0.00 0.00 31.27 2.90
5094 9172 6.447162 ACGAAAATCTTTTGGGTTTCATCTC 58.553 36.000 0.00 0.00 31.27 2.75
5095 9173 5.863935 CGAAAATCTTTTGGGTTTCATCTCC 59.136 40.000 0.00 0.00 31.66 3.71
5096 9174 6.516527 CGAAAATCTTTTGGGTTTCATCTCCA 60.517 38.462 0.00 0.00 31.66 3.86
5097 9175 6.940430 AAATCTTTTGGGTTTCATCTCCAT 57.060 33.333 0.00 0.00 0.00 3.41
5098 9176 8.434589 AAAATCTTTTGGGTTTCATCTCCATA 57.565 30.769 0.00 0.00 0.00 2.74
5099 9177 8.434589 AAATCTTTTGGGTTTCATCTCCATAA 57.565 30.769 0.00 0.00 0.00 1.90
5100 9178 7.651027 ATCTTTTGGGTTTCATCTCCATAAG 57.349 36.000 0.00 0.00 39.39 1.73
5101 9179 6.789268 TCTTTTGGGTTTCATCTCCATAAGA 58.211 36.000 9.33 9.33 42.22 2.10
5102 9180 6.886459 TCTTTTGGGTTTCATCTCCATAAGAG 59.114 38.462 9.33 0.00 40.80 2.85
5103 9181 5.779241 TTGGGTTTCATCTCCATAAGAGT 57.221 39.130 0.00 0.00 43.71 3.24
5104 9182 5.102953 TGGGTTTCATCTCCATAAGAGTG 57.897 43.478 0.00 0.00 43.71 3.51
5105 9183 4.080356 TGGGTTTCATCTCCATAAGAGTGG 60.080 45.833 0.00 0.00 43.71 4.00
5106 9184 3.879892 GGTTTCATCTCCATAAGAGTGGC 59.120 47.826 0.00 0.00 43.71 5.01
5107 9185 4.384647 GGTTTCATCTCCATAAGAGTGGCT 60.385 45.833 0.00 0.00 43.71 4.75
5108 9186 4.412796 TTCATCTCCATAAGAGTGGCTG 57.587 45.455 0.00 0.00 43.71 4.85
5109 9187 3.646534 TCATCTCCATAAGAGTGGCTGA 58.353 45.455 0.00 0.00 43.71 4.26
5110 9188 3.640498 TCATCTCCATAAGAGTGGCTGAG 59.360 47.826 0.00 0.00 43.71 3.35
5111 9189 3.107402 TCTCCATAAGAGTGGCTGAGT 57.893 47.619 0.00 0.00 43.71 3.41
5112 9190 3.445008 TCTCCATAAGAGTGGCTGAGTT 58.555 45.455 0.00 0.00 43.71 3.01
5113 9191 3.840666 TCTCCATAAGAGTGGCTGAGTTT 59.159 43.478 0.00 0.00 43.71 2.66
5114 9192 4.287067 TCTCCATAAGAGTGGCTGAGTTTT 59.713 41.667 0.00 0.00 43.71 2.43
5115 9193 4.985538 TCCATAAGAGTGGCTGAGTTTTT 58.014 39.130 0.00 0.00 39.19 1.94
5116 9194 6.013725 TCTCCATAAGAGTGGCTGAGTTTTTA 60.014 38.462 0.00 0.00 43.71 1.52
5117 9195 5.938125 TCCATAAGAGTGGCTGAGTTTTTAC 59.062 40.000 0.00 0.00 39.19 2.01
5118 9196 5.705441 CCATAAGAGTGGCTGAGTTTTTACA 59.295 40.000 0.00 0.00 31.43 2.41
5119 9197 6.375455 CCATAAGAGTGGCTGAGTTTTTACAT 59.625 38.462 0.00 0.00 31.43 2.29
5120 9198 7.094205 CCATAAGAGTGGCTGAGTTTTTACATT 60.094 37.037 0.00 0.00 31.43 2.71
5121 9199 5.695851 AGAGTGGCTGAGTTTTTACATTG 57.304 39.130 0.00 0.00 0.00 2.82
5122 9200 4.520492 AGAGTGGCTGAGTTTTTACATTGG 59.480 41.667 0.00 0.00 0.00 3.16
5123 9201 3.005791 AGTGGCTGAGTTTTTACATTGGC 59.994 43.478 0.00 0.00 0.00 4.52
5124 9202 3.005791 GTGGCTGAGTTTTTACATTGGCT 59.994 43.478 0.00 0.00 0.00 4.75
5125 9203 3.640967 TGGCTGAGTTTTTACATTGGCTT 59.359 39.130 0.00 0.00 0.00 4.35
5126 9204 3.989817 GGCTGAGTTTTTACATTGGCTTG 59.010 43.478 0.00 0.00 0.00 4.01
5127 9205 3.429881 GCTGAGTTTTTACATTGGCTTGC 59.570 43.478 0.00 0.00 0.00 4.01
5128 9206 3.988819 TGAGTTTTTACATTGGCTTGCC 58.011 40.909 4.43 4.43 0.00 4.52
5129 9207 3.386078 TGAGTTTTTACATTGGCTTGCCA 59.614 39.130 10.65 10.65 0.00 4.92
5130 9208 4.141846 TGAGTTTTTACATTGGCTTGCCAA 60.142 37.500 26.43 26.43 0.00 4.52
5131 9209 4.379652 AGTTTTTACATTGGCTTGCCAAG 58.620 39.130 27.60 21.41 32.97 3.61
5142 9220 2.927553 CTTGCCAAGCCTATCACAAC 57.072 50.000 0.00 0.00 0.00 3.32
5143 9221 1.474077 CTTGCCAAGCCTATCACAACC 59.526 52.381 0.00 0.00 0.00 3.77
5144 9222 0.323360 TGCCAAGCCTATCACAACCC 60.323 55.000 0.00 0.00 0.00 4.11
5145 9223 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
5146 9224 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
5147 9225 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
5148 9226 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
5149 9227 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
5150 9228 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
5151 9229 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
5152 9230 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
5153 9231 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
5154 9232 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
5155 9233 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
5156 9234 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
5157 9235 1.004394 CACAACCCTCCTCCTTTACCC 59.996 57.143 0.00 0.00 0.00 3.69
5158 9236 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
5159 9237 0.912968 AACCCTCCTCCTTTACCCGG 60.913 60.000 0.00 0.00 0.00 5.73
5160 9238 2.070650 CCCTCCTCCTTTACCCGGG 61.071 68.421 22.25 22.25 0.00 5.73
5161 9239 2.743179 CCTCCTCCTTTACCCGGGC 61.743 68.421 24.08 0.00 0.00 6.13
5162 9240 2.689771 TCCTCCTTTACCCGGGCC 60.690 66.667 24.08 0.00 0.00 5.80
5163 9241 2.691252 CCTCCTTTACCCGGGCCT 60.691 66.667 24.08 4.08 0.00 5.19
5164 9242 2.590092 CTCCTTTACCCGGGCCTG 59.410 66.667 24.08 3.88 0.00 4.85
5165 9243 3.012722 TCCTTTACCCGGGCCTGG 61.013 66.667 25.29 25.29 0.00 4.45
5176 9254 4.256180 GGCCTGGGACCGGCTATG 62.256 72.222 18.71 0.00 46.73 2.23
5177 9255 3.480133 GCCTGGGACCGGCTATGT 61.480 66.667 0.00 0.00 44.17 2.29
5178 9256 3.043999 GCCTGGGACCGGCTATGTT 62.044 63.158 0.00 0.00 44.17 2.71
5179 9257 1.153168 CCTGGGACCGGCTATGTTG 60.153 63.158 0.00 0.00 0.00 3.33
5180 9258 1.622607 CCTGGGACCGGCTATGTTGA 61.623 60.000 0.00 0.00 0.00 3.18
5181 9259 0.179073 CTGGGACCGGCTATGTTGAG 60.179 60.000 0.00 0.00 0.00 3.02
5182 9260 0.616395 TGGGACCGGCTATGTTGAGA 60.616 55.000 0.00 0.00 0.00 3.27
5183 9261 0.179081 GGGACCGGCTATGTTGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
5184 9262 0.535335 GGACCGGCTATGTTGAGACA 59.465 55.000 0.00 0.00 40.71 3.41
5185 9263 1.066430 GGACCGGCTATGTTGAGACAA 60.066 52.381 0.00 0.00 39.66 3.18
5186 9264 2.000447 GACCGGCTATGTTGAGACAAC 59.000 52.381 0.00 7.55 39.66 3.32
5187 9265 1.346395 ACCGGCTATGTTGAGACAACA 59.654 47.619 17.39 17.39 39.66 3.33
5188 9266 2.027192 ACCGGCTATGTTGAGACAACAT 60.027 45.455 25.70 25.70 42.82 2.71
5189 9267 3.196901 ACCGGCTATGTTGAGACAACATA 59.803 43.478 25.32 25.32 40.87 2.29
5194 9272 2.093306 TGTTGAGACAACATAGGCGG 57.907 50.000 12.32 0.00 31.49 6.13
5195 9273 1.621317 TGTTGAGACAACATAGGCGGA 59.379 47.619 12.32 0.00 31.49 5.54
5196 9274 2.271800 GTTGAGACAACATAGGCGGAG 58.728 52.381 9.32 0.00 0.00 4.63
5197 9275 1.557099 TGAGACAACATAGGCGGAGT 58.443 50.000 0.00 0.00 0.00 3.85
5198 9276 1.899814 TGAGACAACATAGGCGGAGTT 59.100 47.619 0.00 0.00 0.00 3.01
5271 9388 8.738645 ATGTGCTAATTAGTTCTTTCCTAAGG 57.261 34.615 13.91 0.00 32.02 2.69
5272 9389 7.686434 TGTGCTAATTAGTTCTTTCCTAAGGT 58.314 34.615 13.91 0.00 32.02 3.50
5415 9534 1.094650 TGCTTGCGCACAGAAGTTCA 61.095 50.000 11.12 0.00 42.25 3.18
5944 10063 3.900601 AGGTGATTCTGGGATAGCAGTAG 59.099 47.826 0.00 0.00 0.00 2.57
5973 10092 5.255710 ACAAGACTAATCCAGATCGTCTG 57.744 43.478 11.19 7.72 43.91 3.51
6301 10420 3.000623 GCGCGACTATGTAAACTTTACCC 59.999 47.826 12.10 0.00 0.00 3.69
6457 10578 3.581755 GCGTGGTGACAGTTACTATGAA 58.418 45.455 5.34 0.00 44.46 2.57
6682 10803 4.701765 ACTCATCATGCATCTACCACTTC 58.298 43.478 0.00 0.00 0.00 3.01
6689 10810 5.893824 TCATGCATCTACCACTTCTTCTCTA 59.106 40.000 0.00 0.00 0.00 2.43
6724 10845 8.567285 TCTCCTCATTTTGTAATCCTTCTTTC 57.433 34.615 0.00 0.00 0.00 2.62
6795 10916 8.180267 CCTTGAGAATTAATGTCATGTCTTCAC 58.820 37.037 0.00 0.00 0.00 3.18
7225 11346 1.912043 CCAGAGACTGTGGAATCCCTT 59.088 52.381 13.43 0.00 37.23 3.95
7232 11353 4.584743 AGACTGTGGAATCCCTTTTTGTTC 59.415 41.667 0.00 0.00 0.00 3.18
7329 11450 6.513806 TGCATCATGCTAGTTGTTGTTTAT 57.486 33.333 11.84 0.00 45.31 1.40
7666 11788 8.534333 AATGTATCACTGTTGTACTTAGTGTG 57.466 34.615 17.86 10.51 41.82 3.82
7721 11843 7.610865 TGTGAGAAATCTTGGAACTTTGTTTT 58.389 30.769 0.00 0.00 0.00 2.43
7808 11931 3.716601 CGGTTCAAGTGGCAAGAAAATT 58.283 40.909 0.00 0.00 0.00 1.82
8023 12148 0.472471 TGTCCCACCAAGTTGGACTC 59.528 55.000 28.80 13.11 45.16 3.36
8082 12209 8.225603 TCTTCTTATTATCTCCAATTGTTGCC 57.774 34.615 4.43 0.00 0.00 4.52
8289 12430 3.535280 ATAGACACACACACACACACA 57.465 42.857 0.00 0.00 0.00 3.72
8290 12431 1.438651 AGACACACACACACACACAC 58.561 50.000 0.00 0.00 0.00 3.82
8291 12432 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
8292 12433 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
8293 12434 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
8294 12435 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
8295 12436 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
8296 12437 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
8297 12438 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
8362 12519 2.289320 GCCATCTCTTGATACCGCTGAT 60.289 50.000 0.00 0.00 0.00 2.90
8392 12556 6.998258 CTGTTTCCAGTTTTGAAATAGCAG 57.002 37.500 0.00 0.00 35.25 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.349155 CGCACGTTAGGTTTTTCAGGAC 60.349 50.000 0.00 0.00 0.00 3.85
12 13 0.946528 ACCCGCACGTTAGGTTTTTC 59.053 50.000 5.46 0.00 0.00 2.29
46 47 5.208463 ACACAAACTGAACCTTTTGTTGT 57.792 34.783 0.00 0.00 42.04 3.32
50 51 4.091453 ACGACACAAACTGAACCTTTTG 57.909 40.909 0.00 0.00 38.45 2.44
55 56 6.056428 AGATAAAACGACACAAACTGAACC 57.944 37.500 0.00 0.00 0.00 3.62
61 62 8.181487 TGATAGCTAGATAAAACGACACAAAC 57.819 34.615 0.00 0.00 0.00 2.93
81 82 5.633830 ATTGGCACACTTTTGACTGATAG 57.366 39.130 0.00 0.00 39.29 2.08
86 87 6.403866 TGATTAATTGGCACACTTTTGACT 57.596 33.333 0.00 0.00 39.29 3.41
99 100 9.276590 AGGCTTTTCTTTTCTTTGATTAATTGG 57.723 29.630 0.00 0.00 0.00 3.16
161 188 1.265454 CCTAAGGCCACCGAAGACCT 61.265 60.000 5.01 0.00 0.00 3.85
271 298 0.516001 CGTCGTCTCGTCTTCCTGAA 59.484 55.000 0.00 0.00 0.00 3.02
300 333 5.519808 GGGGAGAACCTTATTCCATCTTTT 58.480 41.667 0.00 0.00 40.03 2.27
399 433 2.725221 AGATCTGAGCAAATCCACCC 57.275 50.000 0.00 0.00 0.00 4.61
472 506 0.656259 CGCCGTCGATGAAGAGTAGA 59.344 55.000 6.11 0.00 38.10 2.59
541 576 6.485648 ACAAAACTTGTTATGGTAGACAGTCC 59.514 38.462 0.00 0.00 42.22 3.85
712 751 4.664150 TTTCTGCCAGAAAATTCCGTTT 57.336 36.364 17.22 0.00 40.89 3.60
774 821 4.054780 AGTGACACGCTGTTCTTAAGAA 57.945 40.909 13.99 13.99 0.00 2.52
1157 1210 2.102357 ATCGTAGTGACTGCCGCG 59.898 61.111 0.00 0.00 0.00 6.46
1206 1259 2.543031 CCGATCGAATCACCTAAGCGAA 60.543 50.000 18.66 0.00 34.46 4.70
1213 1266 2.693591 ACATACACCGATCGAATCACCT 59.306 45.455 18.66 0.00 0.00 4.00
1314 1369 0.824109 CATTCCAGCACCTCTACGGA 59.176 55.000 0.00 0.00 36.31 4.69
1332 1387 3.021695 AGAGATCCAAACGTACGATCCA 58.978 45.455 24.41 1.55 34.22 3.41
1431 1486 7.405469 TGCACAATCATTTATCACAACAAAC 57.595 32.000 0.00 0.00 0.00 2.93
1499 1554 5.845391 TTCTTTTAGGGTGACAAAACCAG 57.155 39.130 0.00 0.00 42.47 4.00
1533 1588 1.955778 CAACAGTTTCCATGCCTGTCA 59.044 47.619 6.17 0.00 38.44 3.58
1597 1652 9.151471 TGTGCTAGTGAATAACTAAAGATGTTC 57.849 33.333 0.00 0.00 40.92 3.18
1611 1666 1.745087 CGGGCATTTGTGCTAGTGAAT 59.255 47.619 0.07 0.00 34.73 2.57
1717 1782 7.955918 AGATATGCGATAATATAGGTGATGCA 58.044 34.615 0.00 0.00 0.00 3.96
1720 1785 9.373450 AGGAAGATATGCGATAATATAGGTGAT 57.627 33.333 0.00 0.00 0.00 3.06
1850 1916 7.913674 TTTAAACATTCCTTTTGCTTGTGTT 57.086 28.000 0.00 0.00 0.00 3.32
1851 1917 7.606073 AGTTTTAAACATTCCTTTTGCTTGTGT 59.394 29.630 10.60 0.00 0.00 3.72
2051 3465 9.606631 CTATTCAAATACATTATAGCCTCCCTC 57.393 37.037 0.00 0.00 0.00 4.30
2144 3559 1.546476 TGTCTGGCCAAAACGTGTTTT 59.454 42.857 7.01 4.93 42.91 2.43
2398 4376 4.748701 TGTTCTTCCCTACTCTACCTTGT 58.251 43.478 0.00 0.00 0.00 3.16
2672 6436 3.696051 ACGCGAGGTGGTACTAATTCTTA 59.304 43.478 15.93 0.00 0.00 2.10
2701 6465 6.159988 GCATCTGTCCTACGCTAATTAAGAT 58.840 40.000 0.00 0.00 0.00 2.40
2702 6466 5.529791 GCATCTGTCCTACGCTAATTAAGA 58.470 41.667 0.00 0.00 0.00 2.10
2961 6732 6.338937 ACCTTTACTGACTATCGAATTCCAC 58.661 40.000 0.00 0.00 0.00 4.02
3031 6806 5.694816 TGGTTAATTTCATGCAGTAACGTG 58.305 37.500 0.00 0.00 0.00 4.49
3134 6910 2.879103 ACGGAATTCCATGGTTGTCT 57.121 45.000 24.09 0.00 35.14 3.41
3301 7077 5.760484 ACCAAGATAGTTAACCCGGTTAA 57.240 39.130 17.31 17.31 35.92 2.01
3359 7135 2.076622 ATCCCAGATCGACTTCCGCG 62.077 60.000 0.00 0.00 38.37 6.46
3678 7455 1.660355 CGCCTATCTCGCCTAAGCA 59.340 57.895 0.00 0.00 39.83 3.91
3724 7501 3.207778 ACGTTGCAAAAAGTACTAGGCA 58.792 40.909 0.00 0.98 0.00 4.75
3785 7562 5.277857 AGTGTCTACGGGAATATTCAAGG 57.722 43.478 17.07 7.75 0.00 3.61
3892 7669 5.482175 AGCCATCCCAGATAGACTTATGTAC 59.518 44.000 0.00 0.00 0.00 2.90
4022 7799 3.058224 CCAAGTCGAAAAGGGCAACTAAG 60.058 47.826 0.00 0.00 0.00 2.18
4217 7994 1.196127 GCAGCTTACAACCGGTTACAC 59.804 52.381 21.79 8.16 0.00 2.90
4357 8134 5.359860 CACCAAGAAAAAGGTAAAGTCCACT 59.640 40.000 0.00 0.00 36.07 4.00
4401 8190 7.560991 TGAAAATCACATATAGTCCAAGGCAAT 59.439 33.333 0.00 0.00 0.00 3.56
4486 8275 8.124823 CGACCATTAGAGTTACGTAATTCTACA 58.875 37.037 29.54 22.52 35.24 2.74
4538 8327 4.403432 CCTAATCAAATCACAGCCATGGTT 59.597 41.667 14.67 3.81 0.00 3.67
4556 8345 7.494952 CGATGAATCATCATAGATGTGCCTAAT 59.505 37.037 21.51 0.00 46.30 1.73
4612 8401 5.473066 AAATATATGGCCACTGAAATGCC 57.527 39.130 8.16 0.00 45.56 4.40
4613 8402 6.762661 ACAAAAATATATGGCCACTGAAATGC 59.237 34.615 8.16 0.00 0.00 3.56
4677 8549 2.479837 TGTTTGCACTTCTACGACAGG 58.520 47.619 0.00 0.00 0.00 4.00
4698 8570 2.431454 TGGATAACTCATGCGCAACAA 58.569 42.857 17.11 1.12 0.00 2.83
4758 8630 3.496675 GGCTGGTAAATCAGACCCC 57.503 57.895 0.00 0.00 36.81 4.95
4788 8660 0.322816 CAGACCCCCATTCCACACAG 60.323 60.000 0.00 0.00 0.00 3.66
4970 9048 8.062065 TGTTGTTTAAGGAAAGAAACTGATGT 57.938 30.769 0.00 0.00 36.66 3.06
4971 9049 8.807581 GTTGTTGTTTAAGGAAAGAAACTGATG 58.192 33.333 0.00 0.00 36.66 3.07
4972 9050 8.527810 TGTTGTTGTTTAAGGAAAGAAACTGAT 58.472 29.630 0.00 0.00 36.66 2.90
4973 9051 7.887381 TGTTGTTGTTTAAGGAAAGAAACTGA 58.113 30.769 0.00 0.00 36.66 3.41
4974 9052 8.432359 GTTGTTGTTGTTTAAGGAAAGAAACTG 58.568 33.333 0.00 0.00 36.66 3.16
4975 9053 8.145122 TGTTGTTGTTGTTTAAGGAAAGAAACT 58.855 29.630 0.00 0.00 36.66 2.66
4976 9054 8.300495 TGTTGTTGTTGTTTAAGGAAAGAAAC 57.700 30.769 0.00 0.00 36.33 2.78
4977 9055 8.766151 GTTGTTGTTGTTGTTTAAGGAAAGAAA 58.234 29.630 0.00 0.00 30.32 2.52
4978 9056 7.926555 TGTTGTTGTTGTTGTTTAAGGAAAGAA 59.073 29.630 0.00 0.00 0.00 2.52
4979 9057 7.434492 TGTTGTTGTTGTTGTTTAAGGAAAGA 58.566 30.769 0.00 0.00 0.00 2.52
4980 9058 7.644986 TGTTGTTGTTGTTGTTTAAGGAAAG 57.355 32.000 0.00 0.00 0.00 2.62
4981 9059 7.494625 TGTTGTTGTTGTTGTTGTTTAAGGAAA 59.505 29.630 0.00 0.00 0.00 3.13
4982 9060 6.984474 TGTTGTTGTTGTTGTTGTTTAAGGAA 59.016 30.769 0.00 0.00 0.00 3.36
4983 9061 6.513180 TGTTGTTGTTGTTGTTGTTTAAGGA 58.487 32.000 0.00 0.00 0.00 3.36
4984 9062 6.771188 TGTTGTTGTTGTTGTTGTTTAAGG 57.229 33.333 0.00 0.00 0.00 2.69
4985 9063 7.621991 TGTTGTTGTTGTTGTTGTTGTTTAAG 58.378 30.769 0.00 0.00 0.00 1.85
4986 9064 7.534085 TGTTGTTGTTGTTGTTGTTGTTTAA 57.466 28.000 0.00 0.00 0.00 1.52
4987 9065 7.064134 TGTTGTTGTTGTTGTTGTTGTTGTTTA 59.936 29.630 0.00 0.00 0.00 2.01
4988 9066 6.128282 TGTTGTTGTTGTTGTTGTTGTTGTTT 60.128 30.769 0.00 0.00 0.00 2.83
4989 9067 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
4990 9068 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
4991 9069 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
4992 9070 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
4993 9071 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
4994 9072 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
4995 9073 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
4996 9074 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
4997 9075 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
4998 9076 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
4999 9077 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
5000 9078 5.637387 AGTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
5001 9079 5.789521 AGTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
5002 9080 5.400066 AGTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
5003 9081 4.803613 GGAGTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
5004 9082 4.142026 GGGAGTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
5005 9083 3.383505 GGGAGTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 0.00 0.00 3.32
5006 9084 3.383185 TGGGAGTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 0.00 0.00 3.33
5007 9085 3.637769 TGGGAGTAAAGGCTTTGTTGTT 58.362 40.909 22.32 3.29 0.00 2.83
5008 9086 3.306472 TGGGAGTAAAGGCTTTGTTGT 57.694 42.857 22.32 3.98 0.00 3.32
5009 9087 4.142049 TGTTTGGGAGTAAAGGCTTTGTTG 60.142 41.667 22.32 0.00 0.00 3.33
5010 9088 4.027437 TGTTTGGGAGTAAAGGCTTTGTT 58.973 39.130 22.32 10.03 0.00 2.83
5011 9089 3.637769 TGTTTGGGAGTAAAGGCTTTGT 58.362 40.909 22.32 9.46 0.00 2.83
5012 9090 4.099419 ACTTGTTTGGGAGTAAAGGCTTTG 59.901 41.667 22.32 3.36 0.00 2.77
5013 9091 4.286707 ACTTGTTTGGGAGTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
5014 9092 3.910989 ACTTGTTTGGGAGTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
5015 9093 3.595190 ACTTGTTTGGGAGTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
5016 9094 3.977427 CAACTTGTTTGGGAGTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
5027 9105 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
5028 9106 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
5029 9107 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
5030 9108 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
5031 9109 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
5032 9110 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
5033 9111 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
5034 9112 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
5035 9113 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
5036 9114 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
5037 9115 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
5038 9116 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
5039 9117 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
5040 9118 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
5041 9119 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
5042 9120 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
5043 9121 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
5044 9122 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
5045 9123 6.739331 AGATCTTATGGGTTTCACCTCTAG 57.261 41.667 0.00 0.00 38.64 2.43
5046 9124 7.201884 CGTTAGATCTTATGGGTTTCACCTCTA 60.202 40.741 0.00 0.00 38.64 2.43
5047 9125 6.407074 CGTTAGATCTTATGGGTTTCACCTCT 60.407 42.308 0.00 0.00 38.64 3.69
5048 9126 5.753921 CGTTAGATCTTATGGGTTTCACCTC 59.246 44.000 0.00 0.00 38.64 3.85
5049 9127 5.424252 TCGTTAGATCTTATGGGTTTCACCT 59.576 40.000 0.00 0.00 38.64 4.00
5050 9128 5.667466 TCGTTAGATCTTATGGGTTTCACC 58.333 41.667 0.00 0.00 37.60 4.02
5051 9129 7.605410 TTTCGTTAGATCTTATGGGTTTCAC 57.395 36.000 0.00 0.00 0.00 3.18
5052 9130 8.801882 ATTTTCGTTAGATCTTATGGGTTTCA 57.198 30.769 0.00 0.00 0.00 2.69
5053 9131 9.110502 AGATTTTCGTTAGATCTTATGGGTTTC 57.889 33.333 0.00 0.00 0.00 2.78
5054 9132 9.462606 AAGATTTTCGTTAGATCTTATGGGTTT 57.537 29.630 0.00 0.00 38.11 3.27
5055 9133 9.462606 AAAGATTTTCGTTAGATCTTATGGGTT 57.537 29.630 0.00 0.00 38.74 4.11
5056 9134 9.462606 AAAAGATTTTCGTTAGATCTTATGGGT 57.537 29.630 0.00 0.00 38.74 4.51
5057 9135 9.722056 CAAAAGATTTTCGTTAGATCTTATGGG 57.278 33.333 0.00 0.00 38.74 4.00
5058 9136 9.722056 CCAAAAGATTTTCGTTAGATCTTATGG 57.278 33.333 0.00 0.00 38.74 2.74
5059 9137 9.722056 CCCAAAAGATTTTCGTTAGATCTTATG 57.278 33.333 0.00 0.00 38.74 1.90
5060 9138 9.462606 ACCCAAAAGATTTTCGTTAGATCTTAT 57.537 29.630 0.00 0.00 38.74 1.73
5061 9139 8.857694 ACCCAAAAGATTTTCGTTAGATCTTA 57.142 30.769 0.00 0.00 38.74 2.10
5062 9140 7.761038 ACCCAAAAGATTTTCGTTAGATCTT 57.239 32.000 0.00 0.00 40.76 2.40
5063 9141 7.761038 AACCCAAAAGATTTTCGTTAGATCT 57.239 32.000 0.00 0.00 0.00 2.75
5064 9142 8.079809 TGAAACCCAAAAGATTTTCGTTAGATC 58.920 33.333 0.00 0.00 31.76 2.75
5065 9143 7.947282 TGAAACCCAAAAGATTTTCGTTAGAT 58.053 30.769 2.22 0.00 31.76 1.98
5066 9144 7.336161 TGAAACCCAAAAGATTTTCGTTAGA 57.664 32.000 2.22 0.00 31.76 2.10
5067 9145 8.082242 AGATGAAACCCAAAAGATTTTCGTTAG 58.918 33.333 0.00 0.00 31.76 2.34
5068 9146 7.947282 AGATGAAACCCAAAAGATTTTCGTTA 58.053 30.769 0.00 0.00 31.76 3.18
5069 9147 6.816136 AGATGAAACCCAAAAGATTTTCGTT 58.184 32.000 0.00 0.00 31.76 3.85
5070 9148 6.405278 AGATGAAACCCAAAAGATTTTCGT 57.595 33.333 0.00 0.00 31.76 3.85
5071 9149 5.863935 GGAGATGAAACCCAAAAGATTTTCG 59.136 40.000 0.00 0.00 31.76 3.46
5072 9150 6.758254 TGGAGATGAAACCCAAAAGATTTTC 58.242 36.000 0.00 0.00 0.00 2.29
5073 9151 6.745794 TGGAGATGAAACCCAAAAGATTTT 57.254 33.333 0.00 0.00 0.00 1.82
5074 9152 6.940430 ATGGAGATGAAACCCAAAAGATTT 57.060 33.333 0.00 0.00 33.15 2.17
5075 9153 7.895429 TCTTATGGAGATGAAACCCAAAAGATT 59.105 33.333 0.00 0.00 33.15 2.40
5076 9154 7.413446 TCTTATGGAGATGAAACCCAAAAGAT 58.587 34.615 0.00 0.00 33.15 2.40
5077 9155 6.789268 TCTTATGGAGATGAAACCCAAAAGA 58.211 36.000 0.00 0.00 33.15 2.52
5078 9156 6.660949 ACTCTTATGGAGATGAAACCCAAAAG 59.339 38.462 4.83 0.00 44.45 2.27
5079 9157 6.434028 CACTCTTATGGAGATGAAACCCAAAA 59.566 38.462 4.83 0.00 44.45 2.44
5080 9158 5.945784 CACTCTTATGGAGATGAAACCCAAA 59.054 40.000 4.83 0.00 44.45 3.28
5081 9159 5.500234 CACTCTTATGGAGATGAAACCCAA 58.500 41.667 4.83 0.00 44.45 4.12
5082 9160 4.080356 CCACTCTTATGGAGATGAAACCCA 60.080 45.833 4.83 0.00 44.45 4.51
5083 9161 4.455606 CCACTCTTATGGAGATGAAACCC 58.544 47.826 4.83 0.00 44.45 4.11
5084 9162 3.879892 GCCACTCTTATGGAGATGAAACC 59.120 47.826 0.00 0.00 44.45 3.27
5085 9163 4.574013 CAGCCACTCTTATGGAGATGAAAC 59.426 45.833 0.00 0.00 44.45 2.78
5086 9164 4.471025 TCAGCCACTCTTATGGAGATGAAA 59.529 41.667 0.00 0.00 44.45 2.69
5087 9165 4.033009 TCAGCCACTCTTATGGAGATGAA 58.967 43.478 0.00 0.00 44.45 2.57
5088 9166 3.640498 CTCAGCCACTCTTATGGAGATGA 59.360 47.826 0.00 0.00 44.45 2.92
5089 9167 3.387374 ACTCAGCCACTCTTATGGAGATG 59.613 47.826 0.00 0.00 44.45 2.90
5090 9168 3.652055 ACTCAGCCACTCTTATGGAGAT 58.348 45.455 0.00 0.00 44.45 2.75
5091 9169 3.107402 ACTCAGCCACTCTTATGGAGA 57.893 47.619 0.00 0.00 44.45 3.71
5092 9170 3.902881 AACTCAGCCACTCTTATGGAG 57.097 47.619 0.00 0.00 43.02 3.86
5093 9171 4.640771 AAAACTCAGCCACTCTTATGGA 57.359 40.909 0.00 0.00 43.02 3.41
5094 9172 5.705441 TGTAAAAACTCAGCCACTCTTATGG 59.295 40.000 0.00 0.00 43.26 2.74
5095 9173 6.801539 TGTAAAAACTCAGCCACTCTTATG 57.198 37.500 0.00 0.00 0.00 1.90
5096 9174 7.094205 CCAATGTAAAAACTCAGCCACTCTTAT 60.094 37.037 0.00 0.00 0.00 1.73
5097 9175 6.206634 CCAATGTAAAAACTCAGCCACTCTTA 59.793 38.462 0.00 0.00 0.00 2.10
5098 9176 5.010012 CCAATGTAAAAACTCAGCCACTCTT 59.990 40.000 0.00 0.00 0.00 2.85
5099 9177 4.520492 CCAATGTAAAAACTCAGCCACTCT 59.480 41.667 0.00 0.00 0.00 3.24
5100 9178 4.798574 CCAATGTAAAAACTCAGCCACTC 58.201 43.478 0.00 0.00 0.00 3.51
5101 9179 3.005791 GCCAATGTAAAAACTCAGCCACT 59.994 43.478 0.00 0.00 0.00 4.00
5102 9180 3.005791 AGCCAATGTAAAAACTCAGCCAC 59.994 43.478 0.00 0.00 0.00 5.01
5103 9181 3.230134 AGCCAATGTAAAAACTCAGCCA 58.770 40.909 0.00 0.00 0.00 4.75
5104 9182 3.942130 AGCCAATGTAAAAACTCAGCC 57.058 42.857 0.00 0.00 0.00 4.85
5105 9183 3.429881 GCAAGCCAATGTAAAAACTCAGC 59.570 43.478 0.00 0.00 0.00 4.26
5106 9184 3.989817 GGCAAGCCAATGTAAAAACTCAG 59.010 43.478 6.14 0.00 35.81 3.35
5107 9185 3.386078 TGGCAAGCCAATGTAAAAACTCA 59.614 39.130 12.11 0.00 44.12 3.41
5108 9186 3.988819 TGGCAAGCCAATGTAAAAACTC 58.011 40.909 12.11 0.00 44.12 3.01
5123 9201 1.474077 GGTTGTGATAGGCTTGGCAAG 59.526 52.381 22.75 22.75 0.00 4.01
5124 9202 1.544724 GGTTGTGATAGGCTTGGCAA 58.455 50.000 0.00 0.00 0.00 4.52
5125 9203 0.323360 GGGTTGTGATAGGCTTGGCA 60.323 55.000 0.00 0.00 0.00 4.92
5126 9204 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
5127 9205 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
5128 9206 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
5129 9207 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
5130 9208 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
5131 9209 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
5132 9210 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
5133 9211 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
5134 9212 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
5135 9213 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
5136 9214 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
5137 9215 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
5138 9216 1.369403 GGGTAAAGGAGGAGGGTTGT 58.631 55.000 0.00 0.00 0.00 3.32
5139 9217 0.252197 CGGGTAAAGGAGGAGGGTTG 59.748 60.000 0.00 0.00 0.00 3.77
5140 9218 0.912968 CCGGGTAAAGGAGGAGGGTT 60.913 60.000 0.00 0.00 0.00 4.11
5141 9219 1.306739 CCGGGTAAAGGAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
5142 9220 2.070650 CCCGGGTAAAGGAGGAGGG 61.071 68.421 14.18 0.00 0.00 4.30
5143 9221 2.743179 GCCCGGGTAAAGGAGGAGG 61.743 68.421 24.63 0.00 0.00 4.30
5144 9222 2.743179 GGCCCGGGTAAAGGAGGAG 61.743 68.421 24.63 0.00 0.00 3.69
5145 9223 2.689771 GGCCCGGGTAAAGGAGGA 60.690 66.667 24.63 0.00 0.00 3.71
5146 9224 2.691252 AGGCCCGGGTAAAGGAGG 60.691 66.667 24.63 0.00 0.00 4.30
5147 9225 2.590092 CAGGCCCGGGTAAAGGAG 59.410 66.667 24.63 1.37 0.00 3.69
5148 9226 3.012722 CCAGGCCCGGGTAAAGGA 61.013 66.667 24.63 0.00 0.00 3.36
5149 9227 4.123545 CCCAGGCCCGGGTAAAGG 62.124 72.222 24.63 18.41 41.83 3.11
5161 9239 1.153168 CAACATAGCCGGTCCCAGG 60.153 63.158 1.90 0.00 0.00 4.45
5162 9240 0.179073 CTCAACATAGCCGGTCCCAG 60.179 60.000 1.90 0.00 0.00 4.45
5163 9241 0.616395 TCTCAACATAGCCGGTCCCA 60.616 55.000 1.90 0.00 0.00 4.37
5164 9242 0.179081 GTCTCAACATAGCCGGTCCC 60.179 60.000 1.90 0.00 0.00 4.46
5165 9243 0.535335 TGTCTCAACATAGCCGGTCC 59.465 55.000 1.90 0.00 0.00 4.46
5166 9244 2.000447 GTTGTCTCAACATAGCCGGTC 59.000 52.381 1.90 0.00 34.73 4.79
5167 9245 1.346395 TGTTGTCTCAACATAGCCGGT 59.654 47.619 1.90 0.00 34.73 5.28
5168 9246 2.093306 TGTTGTCTCAACATAGCCGG 57.907 50.000 10.63 0.00 34.73 6.13
5173 9251 3.449377 TCCGCCTATGTTGTCTCAACATA 59.551 43.478 24.21 24.21 40.87 2.29
5174 9252 2.236146 TCCGCCTATGTTGTCTCAACAT 59.764 45.455 24.50 24.50 42.82 2.71
5175 9253 1.621317 TCCGCCTATGTTGTCTCAACA 59.379 47.619 15.83 15.83 34.31 3.33
5176 9254 2.271800 CTCCGCCTATGTTGTCTCAAC 58.728 52.381 5.78 5.78 0.00 3.18
5177 9255 1.899814 ACTCCGCCTATGTTGTCTCAA 59.100 47.619 0.00 0.00 0.00 3.02
5178 9256 1.557099 ACTCCGCCTATGTTGTCTCA 58.443 50.000 0.00 0.00 0.00 3.27
5179 9257 2.674796 AACTCCGCCTATGTTGTCTC 57.325 50.000 0.00 0.00 0.00 3.36
5180 9258 2.829720 TGTAACTCCGCCTATGTTGTCT 59.170 45.455 0.00 0.00 0.00 3.41
5181 9259 3.241067 TGTAACTCCGCCTATGTTGTC 57.759 47.619 0.00 0.00 0.00 3.18
5182 9260 3.196901 TGATGTAACTCCGCCTATGTTGT 59.803 43.478 0.00 0.00 0.00 3.32
5183 9261 3.792401 TGATGTAACTCCGCCTATGTTG 58.208 45.455 0.00 0.00 0.00 3.33
5184 9262 3.451178 ACTGATGTAACTCCGCCTATGTT 59.549 43.478 0.00 0.00 0.00 2.71
5185 9263 3.031736 ACTGATGTAACTCCGCCTATGT 58.968 45.455 0.00 0.00 0.00 2.29
5186 9264 3.735237 ACTGATGTAACTCCGCCTATG 57.265 47.619 0.00 0.00 0.00 2.23
5187 9265 4.406003 AGAAACTGATGTAACTCCGCCTAT 59.594 41.667 0.00 0.00 0.00 2.57
5188 9266 3.767673 AGAAACTGATGTAACTCCGCCTA 59.232 43.478 0.00 0.00 0.00 3.93
5189 9267 2.567615 AGAAACTGATGTAACTCCGCCT 59.432 45.455 0.00 0.00 0.00 5.52
5190 9268 2.973945 AGAAACTGATGTAACTCCGCC 58.026 47.619 0.00 0.00 0.00 6.13
5191 9269 4.142881 GGAAAGAAACTGATGTAACTCCGC 60.143 45.833 0.00 0.00 0.00 5.54
5192 9270 5.238583 AGGAAAGAAACTGATGTAACTCCG 58.761 41.667 0.00 0.00 0.00 4.63
5193 9271 6.568653 GCAAGGAAAGAAACTGATGTAACTCC 60.569 42.308 0.00 0.00 0.00 3.85
5194 9272 6.374578 GCAAGGAAAGAAACTGATGTAACTC 58.625 40.000 0.00 0.00 0.00 3.01
5195 9273 5.241728 GGCAAGGAAAGAAACTGATGTAACT 59.758 40.000 0.00 0.00 0.00 2.24
5196 9274 5.009610 TGGCAAGGAAAGAAACTGATGTAAC 59.990 40.000 0.00 0.00 0.00 2.50
5197 9275 5.136828 TGGCAAGGAAAGAAACTGATGTAA 58.863 37.500 0.00 0.00 0.00 2.41
5198 9276 4.724399 TGGCAAGGAAAGAAACTGATGTA 58.276 39.130 0.00 0.00 0.00 2.29
5408 9527 6.040504 ACCAGATACAAAACCCTTTGAACTTC 59.959 38.462 4.68 0.00 44.03 3.01
5415 9534 3.826729 GCTCACCAGATACAAAACCCTTT 59.173 43.478 0.00 0.00 0.00 3.11
5944 10063 5.086104 TCTGGATTAGTCTTGTTAGGTGC 57.914 43.478 0.00 0.00 0.00 5.01
5973 10092 1.831580 AATCCTTTGAGACTGCCAGC 58.168 50.000 0.00 0.00 0.00 4.85
6343 10462 8.896744 TGAGAATAGCCATTTCTTCTACAATTG 58.103 33.333 3.24 3.24 33.65 2.32
6457 10578 9.474313 TGCTGAATCCAAACTTTTAATAGGTAT 57.526 29.630 0.00 0.00 0.00 2.73
6699 10820 7.611855 GGAAAGAAGGATTACAAAATGAGGAGA 59.388 37.037 0.00 0.00 0.00 3.71
6724 10845 7.475137 TTAGGGTCAAAAATGTTATTCAGGG 57.525 36.000 0.00 0.00 0.00 4.45
6795 10916 5.239525 CCAGGAAGAAAACAAACCTACAGAG 59.760 44.000 0.00 0.00 0.00 3.35
7086 11207 4.379813 CCTGCAACATCCAGACACAAATAC 60.380 45.833 0.00 0.00 32.03 1.89
7093 11214 1.357137 TACCCTGCAACATCCAGACA 58.643 50.000 0.00 0.00 32.03 3.41
7225 11346 6.149973 CCTCTGTGATTCTATGCAGAACAAAA 59.850 38.462 0.00 0.00 43.50 2.44
7232 11353 4.040095 TGGATCCTCTGTGATTCTATGCAG 59.960 45.833 14.23 0.00 0.00 4.41
7666 11788 8.773404 TGTTAGTTAACCTTTCTCATCTTAGC 57.227 34.615 0.88 0.00 35.37 3.09
7721 11843 1.341482 TGTTTCAGCCTGGTTGTCCAA 60.341 47.619 10.46 0.18 43.81 3.53
7808 11931 2.653726 TGAGCTTTGCTTCCAAGAACA 58.346 42.857 0.00 0.00 39.88 3.18
8023 12148 0.976641 TTCACTCACCAGGTAGGCAG 59.023 55.000 0.00 0.00 43.14 4.85
8064 12191 5.129320 GGAAAGGGCAACAATTGGAGATAAT 59.871 40.000 10.83 0.00 39.74 1.28
8065 12192 4.466015 GGAAAGGGCAACAATTGGAGATAA 59.534 41.667 10.83 0.00 39.74 1.75
8074 12201 1.619704 GGGCTAGGAAAGGGCAACAAT 60.620 52.381 0.00 0.00 39.74 2.71
8082 12209 4.403734 TGTACAAAAAGGGCTAGGAAAGG 58.596 43.478 0.00 0.00 0.00 3.11
8271 12412 1.270571 TGTGTGTGTGTGTGTGTGTCT 60.271 47.619 0.00 0.00 0.00 3.41
8272 12413 1.136085 GTGTGTGTGTGTGTGTGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
8274 12415 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
8276 12417 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
8277 12418 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
8278 12419 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
8279 12420 0.601576 ACGTGTGTGTGTGTGTGTGT 60.602 50.000 0.00 0.00 0.00 3.72
8280 12421 0.515127 AACGTGTGTGTGTGTGTGTG 59.485 50.000 0.00 0.00 0.00 3.82
8281 12422 1.231221 AAACGTGTGTGTGTGTGTGT 58.769 45.000 0.00 0.00 0.00 3.72
8282 12423 2.323939 AAAACGTGTGTGTGTGTGTG 57.676 45.000 0.00 0.00 0.00 3.82
8342 12499 3.674528 ATCAGCGGTATCAAGAGATGG 57.325 47.619 0.00 0.00 35.67 3.51
8343 12500 3.186001 GCAATCAGCGGTATCAAGAGATG 59.814 47.826 0.00 0.00 35.67 2.90
8392 12556 3.687572 TCGGCAGAAACTAGTACGATC 57.312 47.619 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.