Multiple sequence alignment - TraesCS1D01G126800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS1D01G126800
chr1D
100.000
4544
0
0
1
4544
138344121
138348664
0.000000e+00
8392.0
1
TraesCS1D01G126800
chr1D
92.222
90
7
0
3084
3173
277362519
277362608
1.330000e-25
128.0
2
TraesCS1D01G126800
chr1A
93.374
4392
183
53
2
4335
154573694
154578035
0.000000e+00
6399.0
3
TraesCS1D01G126800
chr1A
93.333
90
6
0
3084
3173
350017095
350017184
2.850000e-27
134.0
4
TraesCS1D01G126800
chr1A
91.549
71
6
0
3192
3262
241997710
241997780
1.040000e-16
99.0
5
TraesCS1D01G126800
chr1B
95.185
2326
101
10
2014
4335
212750046
212747728
0.000000e+00
3664.0
6
TraesCS1D01G126800
chr1B
94.970
1153
35
13
799
1944
212751348
212750212
0.000000e+00
1786.0
7
TraesCS1D01G126800
chr1B
90.726
496
30
7
1
492
212797182
212796699
0.000000e+00
647.0
8
TraesCS1D01G126800
chr1B
95.556
45
1
1
486
530
605474184
605474141
2.270000e-08
71.3
9
TraesCS1D01G126800
chr4B
97.674
86
2
0
3087
3172
41531501
41531416
1.020000e-31
148.0
10
TraesCS1D01G126800
chr4B
97.727
44
1
0
490
533
508977282
508977325
4.870000e-10
76.8
11
TraesCS1D01G126800
chr7D
94.444
90
5
0
3084
3173
59711291
59711380
6.130000e-29
139.0
12
TraesCS1D01G126800
chr6D
94.382
89
5
0
3085
3173
88776583
88776495
2.200000e-28
137.0
13
TraesCS1D01G126800
chr6D
81.197
117
9
8
437
544
52814153
52814265
1.050000e-11
82.4
14
TraesCS1D01G126800
chr6D
80.702
114
12
6
437
544
267206187
267206078
3.770000e-11
80.5
15
TraesCS1D01G126800
chr6D
100.000
40
0
0
2726
2765
108490606
108490567
1.750000e-09
75.0
16
TraesCS1D01G126800
chr6D
100.000
40
0
0
2726
2765
113824774
113824735
1.750000e-09
75.0
17
TraesCS1D01G126800
chr6D
100.000
40
0
0
2726
2765
389247553
389247592
1.750000e-09
75.0
18
TraesCS1D01G126800
chr6D
100.000
40
0
0
2726
2765
389252306
389252345
1.750000e-09
75.0
19
TraesCS1D01G126800
chr6D
96.875
32
1
0
3225
3256
445729873
445729904
2.000000e-03
54.7
20
TraesCS1D01G126800
chr2B
95.294
85
4
0
3087
3171
139072831
139072915
7.930000e-28
135.0
21
TraesCS1D01G126800
chr2B
85.938
64
8
1
3193
3256
376498409
376498471
2.930000e-07
67.6
22
TraesCS1D01G126800
chr4A
93.182
88
6
0
3087
3174
27643610
27643523
3.690000e-26
130.0
23
TraesCS1D01G126800
chr4A
79.167
144
24
5
427
565
363081281
363081139
1.350000e-15
95.3
24
TraesCS1D01G126800
chrUn
79.856
139
17
6
428
558
74825613
74825478
1.740000e-14
91.6
25
TraesCS1D01G126800
chrUn
100.000
40
0
0
2726
2765
352979300
352979339
1.750000e-09
75.0
26
TraesCS1D01G126800
chrUn
100.000
40
0
0
2726
2765
354078560
354078599
1.750000e-09
75.0
27
TraesCS1D01G126800
chrUn
100.000
40
0
0
2726
2765
433294286
433294247
1.750000e-09
75.0
28
TraesCS1D01G126800
chr2A
88.732
71
8
0
3192
3262
593496706
593496776
2.250000e-13
87.9
29
TraesCS1D01G126800
chr2D
87.324
71
9
0
3192
3262
449516386
449516316
1.050000e-11
82.4
30
TraesCS1D01G126800
chr5B
92.157
51
3
1
3213
3262
392152343
392152293
2.270000e-08
71.3
31
TraesCS1D01G126800
chr7A
97.143
35
1
0
3228
3262
206928940
206928906
4.910000e-05
60.2
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS1D01G126800
chr1D
138344121
138348664
4543
False
8392
8392
100.0000
1
4544
1
chr1D.!!$F1
4543
1
TraesCS1D01G126800
chr1A
154573694
154578035
4341
False
6399
6399
93.3740
2
4335
1
chr1A.!!$F1
4333
2
TraesCS1D01G126800
chr1B
212747728
212751348
3620
True
2725
3664
95.0775
799
4335
2
chr1B.!!$R3
3536
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
708
718
0.038343
TTGCATTTGGCTTTCTCGGC
60.038
50.0
0.00
0.0
45.15
5.54
F
923
938
0.613777
ACCGGAACCCTCTTGCTAAG
59.386
55.0
9.46
0.0
0.00
2.18
F
1861
1889
1.298953
ACCTGTACCATGCATTCCCT
58.701
50.0
0.00
0.0
0.00
4.20
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1976
2004
1.340017
TGTTAGTACTACTCCCGCGGT
60.340
52.381
26.12
8.42
0.00
5.68
R
2218
2344
1.625818
TCCTCCTCTTCCACAAGCTTC
59.374
52.381
0.00
0.00
0.00
3.86
R
3832
3970
1.067915
GCGGTGCATGTAACCAAACAT
60.068
47.619
16.82
0.00
40.75
2.71
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
146
149
4.546829
ACGAGTTCATGCCTAAACCTTA
57.453
40.909
0.00
0.00
0.00
2.69
147
150
5.099042
ACGAGTTCATGCCTAAACCTTAT
57.901
39.130
0.00
0.00
0.00
1.73
160
163
7.610305
TGCCTAAACCTTATAGTTTTGAGAAGG
59.390
37.037
0.00
0.00
40.38
3.46
166
169
6.603599
ACCTTATAGTTTTGAGAAGGGCATTC
59.396
38.462
3.21
3.21
40.88
2.67
191
194
3.252215
CGTACATTGAGCAAAGTTTGGGA
59.748
43.478
17.11
0.00
0.00
4.37
196
199
3.297134
TGAGCAAAGTTTGGGAGTTCT
57.703
42.857
17.11
4.46
0.00
3.01
208
211
2.175931
TGGGAGTTCTTGCCCTTTAACA
59.824
45.455
0.00
0.00
44.96
2.41
209
212
3.181423
TGGGAGTTCTTGCCCTTTAACAT
60.181
43.478
0.00
0.00
44.96
2.71
210
213
3.444034
GGGAGTTCTTGCCCTTTAACATC
59.556
47.826
0.00
0.00
41.31
3.06
211
214
3.127030
GGAGTTCTTGCCCTTTAACATCG
59.873
47.826
0.00
0.00
0.00
3.84
212
215
3.751518
AGTTCTTGCCCTTTAACATCGT
58.248
40.909
0.00
0.00
0.00
3.73
213
216
4.142038
AGTTCTTGCCCTTTAACATCGTT
58.858
39.130
0.00
0.00
0.00
3.85
214
217
4.023193
AGTTCTTGCCCTTTAACATCGTTG
60.023
41.667
0.00
0.00
0.00
4.10
215
218
2.227865
TCTTGCCCTTTAACATCGTTGC
59.772
45.455
0.00
0.00
0.00
4.17
218
221
2.625790
TGCCCTTTAACATCGTTGCTTT
59.374
40.909
0.00
0.00
0.00
3.51
220
223
3.305064
GCCCTTTAACATCGTTGCTTTGA
60.305
43.478
0.00
0.00
0.00
2.69
275
278
3.275143
CATGATGGCATGCAATGGTTTT
58.725
40.909
21.36
0.00
46.86
2.43
300
303
7.397221
TGCTGCTAGGCTAATACATTATCATT
58.603
34.615
0.00
0.00
0.00
2.57
435
438
1.535462
CCACTCCATCGGTTCACAAAC
59.465
52.381
0.00
0.00
34.46
2.93
517
522
8.906636
TCACTTATTTCAGTTCGTATGTAGTC
57.093
34.615
0.00
0.00
0.00
2.59
556
561
7.040062
TCCGAAGCATCTTAAAATTTTGAAGGA
60.040
33.333
13.76
1.03
0.00
3.36
558
563
9.143631
CGAAGCATCTTAAAATTTTGAAGGAAT
57.856
29.630
13.76
2.46
0.00
3.01
575
580
9.787435
TTGAAGGAATGAAGTAGTTAGCTAAAA
57.213
29.630
7.99
0.00
0.00
1.52
661
671
5.967088
CAGTTGGGTAGTTACAAAACGTTTC
59.033
40.000
15.01
0.94
40.73
2.78
662
672
5.066375
AGTTGGGTAGTTACAAAACGTTTCC
59.934
40.000
15.01
8.23
40.73
3.13
667
677
4.160642
AGTTACAAAACGTTTCCCTCCT
57.839
40.909
15.01
5.41
40.73
3.69
677
687
2.835389
GTTTCCCTCCTTACTCCTCCT
58.165
52.381
0.00
0.00
0.00
3.69
689
699
2.896039
ACTCCTCCTACAAGCAACTCT
58.104
47.619
0.00
0.00
0.00
3.24
708
718
0.038343
TTGCATTTGGCTTTCTCGGC
60.038
50.000
0.00
0.00
45.15
5.54
729
739
3.774528
CTCCTGCCGGCAGCTGTA
61.775
66.667
44.44
28.62
44.23
2.74
730
740
4.082523
TCCTGCCGGCAGCTGTAC
62.083
66.667
44.44
7.78
44.23
2.90
740
750
3.219052
GGCAGCTGTACCGATCTATAC
57.781
52.381
16.64
0.00
0.00
1.47
742
752
3.256136
GGCAGCTGTACCGATCTATACTT
59.744
47.826
16.64
0.00
0.00
2.24
743
753
4.262079
GGCAGCTGTACCGATCTATACTTT
60.262
45.833
16.64
0.00
0.00
2.66
744
754
5.048224
GGCAGCTGTACCGATCTATACTTTA
60.048
44.000
16.64
0.00
0.00
1.85
923
938
0.613777
ACCGGAACCCTCTTGCTAAG
59.386
55.000
9.46
0.00
0.00
2.18
998
1013
3.243907
ACAGAGTTGAGGAAGAAACGAGG
60.244
47.826
0.00
0.00
0.00
4.63
1835
1863
4.487714
TTTCAGATCCGGCAGATAAAGT
57.512
40.909
0.00
0.00
34.42
2.66
1861
1889
1.298953
ACCTGTACCATGCATTCCCT
58.701
50.000
0.00
0.00
0.00
4.20
1928
1956
2.744741
TCAGTTTGACTTGTTGTTGCGA
59.255
40.909
0.00
0.00
0.00
5.10
1958
1986
9.543018
GCATTTTATATAGTGATCTAAAACGCC
57.457
33.333
0.00
0.00
31.68
5.68
1967
1995
6.875076
AGTGATCTAAAACGCCTTATACAGT
58.125
36.000
0.00
0.00
0.00
3.55
1979
2007
7.141363
ACGCCTTATACAGTATTAGTTTACCG
58.859
38.462
0.00
0.35
0.00
4.02
1980
2008
6.088616
CGCCTTATACAGTATTAGTTTACCGC
59.911
42.308
0.00
0.00
0.00
5.68
1981
2009
6.088616
GCCTTATACAGTATTAGTTTACCGCG
59.911
42.308
0.00
0.00
0.00
6.46
1982
2010
6.583806
CCTTATACAGTATTAGTTTACCGCGG
59.416
42.308
26.86
26.86
0.00
6.46
1984
2012
2.760092
ACAGTATTAGTTTACCGCGGGA
59.240
45.455
31.76
21.43
0.00
5.14
1985
2013
3.181483
ACAGTATTAGTTTACCGCGGGAG
60.181
47.826
31.76
7.30
0.00
4.30
1986
2014
3.026694
AGTATTAGTTTACCGCGGGAGT
58.973
45.455
31.76
19.25
0.00
3.85
1988
2016
3.722728
ATTAGTTTACCGCGGGAGTAG
57.277
47.619
31.76
2.56
0.00
2.57
1989
2017
2.128771
TAGTTTACCGCGGGAGTAGT
57.871
50.000
31.76
17.89
0.00
2.73
2046
2172
8.205131
ACTGTAACTGTTTAACATTCTTTCGT
57.795
30.769
0.00
0.00
0.00
3.85
2047
2173
8.671028
ACTGTAACTGTTTAACATTCTTTCGTT
58.329
29.630
0.00
0.38
0.00
3.85
2931
3057
0.758734
TTCCCGCCCATCATGACTAG
59.241
55.000
0.00
0.00
0.00
2.57
2988
3114
5.279556
GCTAGGATATTTGACAGTAGGGACC
60.280
48.000
0.00
0.00
0.00
4.46
3457
3583
2.090524
GCTTTGATTGGTGCTGCGC
61.091
57.895
0.00
0.00
0.00
6.09
3819
3957
3.469008
TTATAGCTCACATCCGGTTGG
57.531
47.619
16.70
6.13
0.00
3.77
3831
3969
2.473070
TCCGGTTGGTTGATATGGAGA
58.527
47.619
0.00
0.00
36.30
3.71
3832
3970
2.841266
TCCGGTTGGTTGATATGGAGAA
59.159
45.455
0.00
0.00
36.30
2.87
3852
3991
0.312416
TGTTTGGTTACATGCACCGC
59.688
50.000
9.56
4.25
37.07
5.68
3874
4013
1.999648
TTTGCCTCCTTGCATCTGTT
58.000
45.000
0.00
0.00
41.70
3.16
3961
4100
4.334759
GCTGCATATAGGATGGCTGTATTG
59.665
45.833
0.00
0.00
0.00
1.90
4019
4159
1.812235
TAGCTGGTTGATGCACTGTG
58.188
50.000
2.76
2.76
0.00
3.66
4081
4221
6.691754
AACAATTACACATGACACACAGAA
57.308
33.333
0.00
0.00
0.00
3.02
4099
4239
5.009110
CACAGAATTATCCTAGAGCGTCTCA
59.991
44.000
9.09
0.00
32.06
3.27
4156
4296
4.266983
GTGATGAGCACGCAGTCA
57.733
55.556
0.00
0.00
41.61
3.41
4197
4337
3.561429
GCATCGAACCAGTTGCGA
58.439
55.556
0.00
0.00
38.51
5.10
4204
4344
1.295792
GAACCAGTTGCGAGTTGTCA
58.704
50.000
0.00
0.00
0.00
3.58
4256
4397
2.112190
GTAGAGGTTGGGGAGGAGAAG
58.888
57.143
0.00
0.00
0.00
2.85
4275
4416
3.729698
GCAGTGTGCGCATGCTGA
61.730
61.111
33.38
9.47
43.34
4.26
4279
4420
4.986645
TGTGCGCATGCTGACGGT
62.987
61.111
15.91
0.00
43.34
4.83
4302
4443
4.764771
TGTACTAGGCCGCGGGGT
62.765
66.667
29.38
3.37
34.97
4.95
4335
4476
4.250305
AAAGACGCGGGTGGCAGT
62.250
61.111
10.96
0.00
43.84
4.40
4336
4477
4.988598
AAGACGCGGGTGGCAGTG
62.989
66.667
10.96
0.00
43.84
3.66
4338
4479
4.980805
GACGCGGGTGGCAGTGAA
62.981
66.667
10.96
0.00
43.84
3.18
4339
4480
4.988598
ACGCGGGTGGCAGTGAAG
62.989
66.667
12.47
0.00
43.84
3.02
4340
4481
4.988598
CGCGGGTGGCAGTGAAGT
62.989
66.667
0.00
0.00
43.84
3.01
4341
4482
3.050275
GCGGGTGGCAGTGAAGTC
61.050
66.667
0.00
0.00
42.87
3.01
4342
4483
2.743718
CGGGTGGCAGTGAAGTCT
59.256
61.111
0.00
0.00
0.00
3.24
4343
4484
1.669115
CGGGTGGCAGTGAAGTCTG
60.669
63.158
0.00
0.00
38.35
3.51
4344
4485
1.754745
GGGTGGCAGTGAAGTCTGA
59.245
57.895
0.00
0.00
37.61
3.27
4345
4486
0.603975
GGGTGGCAGTGAAGTCTGAC
60.604
60.000
0.00
0.00
43.20
3.51
4346
4487
0.946221
GGTGGCAGTGAAGTCTGACG
60.946
60.000
1.52
0.00
45.60
4.35
4347
4488
0.032130
GTGGCAGTGAAGTCTGACGA
59.968
55.000
1.52
0.00
45.60
4.20
4348
4489
0.315251
TGGCAGTGAAGTCTGACGAG
59.685
55.000
1.52
0.00
45.60
4.18
4349
4490
0.389166
GGCAGTGAAGTCTGACGAGG
60.389
60.000
1.52
0.00
37.61
4.63
4350
4491
1.011451
GCAGTGAAGTCTGACGAGGC
61.011
60.000
1.52
0.00
37.61
4.70
4351
4492
0.315251
CAGTGAAGTCTGACGAGGCA
59.685
55.000
1.52
0.00
37.61
4.75
4352
4493
0.315568
AGTGAAGTCTGACGAGGCAC
59.684
55.000
1.52
9.17
0.00
5.01
4353
4494
0.032130
GTGAAGTCTGACGAGGCACA
59.968
55.000
15.27
4.84
0.00
4.57
4354
4495
0.315251
TGAAGTCTGACGAGGCACAG
59.685
55.000
1.52
0.00
35.72
3.66
4355
4496
0.598562
GAAGTCTGACGAGGCACAGA
59.401
55.000
1.52
0.00
40.22
3.41
4356
4497
0.600557
AAGTCTGACGAGGCACAGAG
59.399
55.000
1.52
0.00
42.56
3.35
4357
4498
1.214062
GTCTGACGAGGCACAGAGG
59.786
63.158
0.00
0.00
42.56
3.69
4358
4499
1.074951
TCTGACGAGGCACAGAGGA
59.925
57.895
0.00
0.00
38.08
3.71
4359
4500
0.539669
TCTGACGAGGCACAGAGGAA
60.540
55.000
0.00
0.00
38.08
3.36
4360
4501
0.108898
CTGACGAGGCACAGAGGAAG
60.109
60.000
0.00
0.00
36.38
3.46
4361
4502
1.446966
GACGAGGCACAGAGGAAGC
60.447
63.158
0.00
0.00
0.00
3.86
4362
4503
2.507992
CGAGGCACAGAGGAAGCG
60.508
66.667
0.00
0.00
0.00
4.68
4363
4504
2.125350
GAGGCACAGAGGAAGCGG
60.125
66.667
0.00
0.00
0.00
5.52
4364
4505
2.925170
AGGCACAGAGGAAGCGGT
60.925
61.111
0.00
0.00
0.00
5.68
4365
4506
2.743928
GGCACAGAGGAAGCGGTG
60.744
66.667
0.00
0.00
37.09
4.94
4367
4508
2.031012
CACAGAGGAAGCGGTGCA
59.969
61.111
0.00
0.00
0.00
4.57
4368
4509
1.597854
CACAGAGGAAGCGGTGCAA
60.598
57.895
0.00
0.00
0.00
4.08
4369
4510
0.957395
CACAGAGGAAGCGGTGCAAT
60.957
55.000
0.00
0.00
0.00
3.56
4370
4511
0.957395
ACAGAGGAAGCGGTGCAATG
60.957
55.000
0.00
0.00
0.00
2.82
4371
4512
2.042831
AGAGGAAGCGGTGCAATGC
61.043
57.895
0.00
0.00
0.00
3.56
4372
4513
3.386867
GAGGAAGCGGTGCAATGCG
62.387
63.158
0.00
0.00
35.87
4.73
4373
4514
3.430862
GGAAGCGGTGCAATGCGA
61.431
61.111
0.00
0.00
35.87
5.10
4374
4515
2.202349
GAAGCGGTGCAATGCGAC
60.202
61.111
0.00
0.00
35.87
5.19
4375
4516
3.982424
GAAGCGGTGCAATGCGACG
62.982
63.158
15.22
15.22
35.87
5.12
4378
4519
3.711842
CGGTGCAATGCGACGTGT
61.712
61.111
12.11
0.00
0.00
4.49
4379
4520
2.637025
GGTGCAATGCGACGTGTT
59.363
55.556
0.00
0.00
0.00
3.32
4380
4521
1.725625
GGTGCAATGCGACGTGTTG
60.726
57.895
0.00
9.15
0.00
3.33
4381
4522
1.725625
GTGCAATGCGACGTGTTGG
60.726
57.895
0.00
0.00
0.00
3.77
4382
4523
2.126888
GCAATGCGACGTGTTGGG
60.127
61.111
13.54
0.00
0.00
4.12
4383
4524
2.903547
GCAATGCGACGTGTTGGGT
61.904
57.895
13.54
0.00
0.00
4.51
4384
4525
1.082169
CAATGCGACGTGTTGGGTG
60.082
57.895
0.00
0.00
0.00
4.61
4385
4526
2.258013
AATGCGACGTGTTGGGTGG
61.258
57.895
0.00
0.00
0.00
4.61
4386
4527
2.951475
AATGCGACGTGTTGGGTGGT
62.951
55.000
0.00
0.00
0.00
4.16
4387
4528
3.645975
GCGACGTGTTGGGTGGTG
61.646
66.667
0.00
0.00
0.00
4.17
4388
4529
2.202960
CGACGTGTTGGGTGGTGT
60.203
61.111
0.00
0.00
0.00
4.16
4389
4530
1.816259
CGACGTGTTGGGTGGTGTT
60.816
57.895
0.00
0.00
0.00
3.32
4390
4531
1.768112
CGACGTGTTGGGTGGTGTTC
61.768
60.000
0.00
0.00
0.00
3.18
4391
4532
1.768112
GACGTGTTGGGTGGTGTTCG
61.768
60.000
0.00
0.00
0.00
3.95
4392
4533
1.816259
CGTGTTGGGTGGTGTTCGT
60.816
57.895
0.00
0.00
0.00
3.85
4393
4534
1.725066
GTGTTGGGTGGTGTTCGTG
59.275
57.895
0.00
0.00
0.00
4.35
4394
4535
0.745128
GTGTTGGGTGGTGTTCGTGA
60.745
55.000
0.00
0.00
0.00
4.35
4395
4536
0.035343
TGTTGGGTGGTGTTCGTGAA
60.035
50.000
0.00
0.00
0.00
3.18
4396
4537
0.661020
GTTGGGTGGTGTTCGTGAAG
59.339
55.000
0.00
0.00
0.00
3.02
4397
4538
0.253610
TTGGGTGGTGTTCGTGAAGT
59.746
50.000
0.00
0.00
0.00
3.01
4398
4539
0.179067
TGGGTGGTGTTCGTGAAGTC
60.179
55.000
0.00
0.00
0.00
3.01
4399
4540
0.106149
GGGTGGTGTTCGTGAAGTCT
59.894
55.000
0.00
0.00
0.00
3.24
4400
4541
1.217882
GGTGGTGTTCGTGAAGTCTG
58.782
55.000
0.00
0.00
0.00
3.51
4401
4542
1.202486
GGTGGTGTTCGTGAAGTCTGA
60.202
52.381
0.00
0.00
0.00
3.27
4402
4543
1.859080
GTGGTGTTCGTGAAGTCTGAC
59.141
52.381
0.00
0.00
0.00
3.51
4403
4544
1.129326
GGTGTTCGTGAAGTCTGACG
58.871
55.000
1.52
0.00
36.91
4.35
4404
4545
1.268896
GGTGTTCGTGAAGTCTGACGA
60.269
52.381
1.52
3.77
42.61
4.20
4405
4546
2.044860
GTGTTCGTGAAGTCTGACGAG
58.955
52.381
1.52
0.00
44.79
4.18
4406
4547
1.001706
TGTTCGTGAAGTCTGACGAGG
60.002
52.381
1.52
0.00
44.79
4.63
4407
4548
0.039437
TTCGTGAAGTCTGACGAGGC
60.039
55.000
1.52
0.00
44.79
4.70
4408
4549
1.797933
CGTGAAGTCTGACGAGGCG
60.798
63.158
1.52
3.19
37.81
5.52
4409
4550
2.089349
GTGAAGTCTGACGAGGCGC
61.089
63.158
0.00
0.00
0.00
6.53
4410
4551
2.507324
GAAGTCTGACGAGGCGCC
60.507
66.667
21.89
21.89
0.00
6.53
4411
4552
4.421479
AAGTCTGACGAGGCGCCG
62.421
66.667
23.20
13.22
0.00
6.46
4436
4577
2.365105
TCCTCACGGACCCCATCC
60.365
66.667
0.00
0.00
45.20
3.51
4437
4578
2.365635
CCTCACGGACCCCATCCT
60.366
66.667
0.00
0.00
46.69
3.24
4438
4579
2.435693
CCTCACGGACCCCATCCTC
61.436
68.421
0.00
0.00
46.69
3.71
4439
4580
2.758327
TCACGGACCCCATCCTCG
60.758
66.667
0.00
0.00
46.69
4.63
4440
4581
3.075005
CACGGACCCCATCCTCGT
61.075
66.667
0.00
0.00
46.69
4.18
4441
4582
3.075005
ACGGACCCCATCCTCGTG
61.075
66.667
0.00
0.00
46.69
4.35
4442
4583
3.849951
CGGACCCCATCCTCGTGG
61.850
72.222
0.00
0.00
46.69
4.94
4443
4584
2.365105
GGACCCCATCCTCGTGGA
60.365
66.667
8.96
8.96
45.22
4.02
4444
4585
2.435693
GGACCCCATCCTCGTGGAG
61.436
68.421
12.42
4.46
46.91
3.86
4464
4605
4.394712
CTGGGCCCACGACCTGTC
62.395
72.222
24.45
0.00
0.00
3.51
4481
4622
3.733960
CGGTGACCGTCGCAGAGA
61.734
66.667
17.28
0.00
42.73
3.10
4482
4623
2.126424
GGTGACCGTCGCAGAGAC
60.126
66.667
13.90
0.00
46.16
3.36
4518
4659
3.885814
TCGCCTTGACAGGGAGTT
58.114
55.556
7.99
0.00
41.21
3.01
4519
4660
1.671742
TCGCCTTGACAGGGAGTTC
59.328
57.895
7.99
0.00
41.21
3.01
4520
4661
1.738099
CGCCTTGACAGGGAGTTCG
60.738
63.158
7.99
0.00
41.21
3.95
4521
4662
2.035442
GCCTTGACAGGGAGTTCGC
61.035
63.158
7.99
0.00
41.21
4.70
4522
4663
1.376037
CCTTGACAGGGAGTTCGCC
60.376
63.158
0.00
0.00
36.36
5.54
4523
4664
1.371183
CTTGACAGGGAGTTCGCCA
59.629
57.895
0.00
0.00
0.00
5.69
4524
4665
0.250295
CTTGACAGGGAGTTCGCCAA
60.250
55.000
0.00
0.00
0.00
4.52
4525
4666
0.250295
TTGACAGGGAGTTCGCCAAG
60.250
55.000
0.00
0.00
0.00
3.61
4526
4667
1.118965
TGACAGGGAGTTCGCCAAGA
61.119
55.000
0.00
0.00
0.00
3.02
4527
4668
0.250513
GACAGGGAGTTCGCCAAGAT
59.749
55.000
0.00
0.00
0.00
2.40
4528
4669
0.693049
ACAGGGAGTTCGCCAAGATT
59.307
50.000
0.00
0.00
0.00
2.40
4529
4670
1.906574
ACAGGGAGTTCGCCAAGATTA
59.093
47.619
0.00
0.00
0.00
1.75
4530
4671
2.304761
ACAGGGAGTTCGCCAAGATTAA
59.695
45.455
0.00
0.00
0.00
1.40
4531
4672
2.939103
CAGGGAGTTCGCCAAGATTAAG
59.061
50.000
0.00
0.00
0.00
1.85
4532
4673
2.092914
AGGGAGTTCGCCAAGATTAAGG
60.093
50.000
0.00
0.00
0.00
2.69
4533
4674
2.093128
GGGAGTTCGCCAAGATTAAGGA
60.093
50.000
0.00
0.00
0.00
3.36
4534
4675
3.198872
GGAGTTCGCCAAGATTAAGGAG
58.801
50.000
0.00
0.00
0.00
3.69
4535
4676
3.198872
GAGTTCGCCAAGATTAAGGAGG
58.801
50.000
0.00
0.00
0.00
4.30
4536
4677
2.838202
AGTTCGCCAAGATTAAGGAGGA
59.162
45.455
0.00
0.00
0.00
3.71
4537
4678
3.118592
AGTTCGCCAAGATTAAGGAGGAG
60.119
47.826
0.00
0.00
0.00
3.69
4538
4679
2.467880
TCGCCAAGATTAAGGAGGAGT
58.532
47.619
0.00
0.00
0.00
3.85
4539
4680
2.168521
TCGCCAAGATTAAGGAGGAGTG
59.831
50.000
0.00
0.00
0.00
3.51
4540
4681
2.743183
CGCCAAGATTAAGGAGGAGTGG
60.743
54.545
0.00
0.00
0.00
4.00
4541
4682
2.239907
GCCAAGATTAAGGAGGAGTGGT
59.760
50.000
0.00
0.00
0.00
4.16
4542
4683
3.682999
GCCAAGATTAAGGAGGAGTGGTC
60.683
52.174
0.00
0.00
0.00
4.02
4543
4684
3.430929
CCAAGATTAAGGAGGAGTGGTCG
60.431
52.174
0.00
0.00
0.00
4.79
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
166
169
3.542712
AACTTTGCTCAATGTACGCAG
57.457
42.857
2.25
0.00
34.82
5.18
169
172
3.252215
TCCCAAACTTTGCTCAATGTACG
59.748
43.478
0.00
0.00
0.00
3.67
191
194
3.751518
ACGATGTTAAAGGGCAAGAACT
58.248
40.909
0.00
0.00
0.00
3.01
196
199
2.235016
AGCAACGATGTTAAAGGGCAA
58.765
42.857
0.00
0.00
0.00
4.52
208
211
9.294030
GAAATTGAGATAATTCAAAGCAACGAT
57.706
29.630
0.00
0.00
40.21
3.73
209
212
8.296000
TGAAATTGAGATAATTCAAAGCAACGA
58.704
29.630
0.00
0.00
40.21
3.85
210
213
8.451687
TGAAATTGAGATAATTCAAAGCAACG
57.548
30.769
0.00
0.00
40.21
4.10
212
215
9.985730
ACTTGAAATTGAGATAATTCAAAGCAA
57.014
25.926
0.00
0.00
40.21
3.91
213
216
9.985730
AACTTGAAATTGAGATAATTCAAAGCA
57.014
25.926
0.00
0.00
40.21
3.91
270
273
3.945285
TGTATTAGCCTAGCAGCAAAACC
59.055
43.478
0.00
0.00
34.23
3.27
275
278
6.358974
TGATAATGTATTAGCCTAGCAGCA
57.641
37.500
0.00
0.00
34.23
4.41
310
313
9.388506
ACCAAAATTGAAAATAAACATGTCACA
57.611
25.926
0.00
0.00
0.00
3.58
417
420
2.631160
TGTTTGTGAACCGATGGAGT
57.369
45.000
0.00
0.00
34.80
3.85
486
489
9.103048
CATACGAACTGAAATAAGTGAACAAAC
57.897
33.333
0.00
0.00
0.00
2.93
493
498
7.758076
TGGACTACATACGAACTGAAATAAGTG
59.242
37.037
0.00
0.00
0.00
3.16
638
648
5.066375
GGAAACGTTTTGTAACTACCCAACT
59.934
40.000
15.89
0.00
31.89
3.16
649
659
5.294734
AGTAAGGAGGGAAACGTTTTGTA
57.705
39.130
15.89
0.00
0.00
2.41
661
671
3.301274
CTTGTAGGAGGAGTAAGGAGGG
58.699
54.545
0.00
0.00
0.00
4.30
662
672
2.696187
GCTTGTAGGAGGAGTAAGGAGG
59.304
54.545
0.00
0.00
0.00
4.30
667
677
4.417437
AGAGTTGCTTGTAGGAGGAGTAA
58.583
43.478
0.00
0.00
0.00
2.24
689
699
0.038343
GCCGAGAAAGCCAAATGCAA
60.038
50.000
0.00
0.00
44.83
4.08
726
736
9.783081
TGACAGTATAAAGTATAGATCGGTACA
57.217
33.333
11.47
0.00
0.00
2.90
729
739
9.516546
TCATGACAGTATAAAGTATAGATCGGT
57.483
33.333
0.00
0.00
0.00
4.69
738
748
9.599866
CCTCAAACATCATGACAGTATAAAGTA
57.400
33.333
0.00
0.00
0.00
2.24
739
749
8.321353
TCCTCAAACATCATGACAGTATAAAGT
58.679
33.333
0.00
0.00
0.00
2.66
740
750
8.722480
TCCTCAAACATCATGACAGTATAAAG
57.278
34.615
0.00
0.00
0.00
1.85
743
753
9.987272
CTATTCCTCAAACATCATGACAGTATA
57.013
33.333
0.00
0.00
0.00
1.47
744
754
8.708378
TCTATTCCTCAAACATCATGACAGTAT
58.292
33.333
0.00
0.00
0.00
2.12
794
804
8.458843
CGTGGAAACATTCTGTCCTATTTTATT
58.541
33.333
0.00
0.00
46.14
1.40
795
805
7.827236
TCGTGGAAACATTCTGTCCTATTTTAT
59.173
33.333
0.00
0.00
46.14
1.40
796
806
7.162761
TCGTGGAAACATTCTGTCCTATTTTA
58.837
34.615
0.00
0.00
46.14
1.52
797
807
6.001460
TCGTGGAAACATTCTGTCCTATTTT
58.999
36.000
0.00
0.00
46.14
1.82
1784
1812
8.816640
AAGCAAAGGTAACAAATATCAACAAG
57.183
30.769
0.00
0.00
41.41
3.16
1793
1821
6.541641
TGAAATGCAAAGCAAAGGTAACAAAT
59.458
30.769
0.00
0.00
43.62
2.32
1861
1889
6.295249
TGATGTCACAAACTGATACCAAGAA
58.705
36.000
0.00
0.00
0.00
2.52
1941
1969
8.639761
ACTGTATAAGGCGTTTTAGATCACTAT
58.360
33.333
0.00
0.00
0.00
2.12
1942
1970
8.004087
ACTGTATAAGGCGTTTTAGATCACTA
57.996
34.615
0.00
0.00
0.00
2.74
1943
1971
6.875076
ACTGTATAAGGCGTTTTAGATCACT
58.125
36.000
0.00
0.00
0.00
3.41
1944
1972
8.813643
ATACTGTATAAGGCGTTTTAGATCAC
57.186
34.615
0.00
0.00
0.00
3.06
1955
1983
6.088616
GCGGTAAACTAATACTGTATAAGGCG
59.911
42.308
0.00
0.00
35.11
5.52
1956
1984
6.088616
CGCGGTAAACTAATACTGTATAAGGC
59.911
42.308
0.00
0.00
35.11
4.35
1957
1985
6.583806
CCGCGGTAAACTAATACTGTATAAGG
59.416
42.308
19.50
0.00
35.11
2.69
1958
1986
6.583806
CCCGCGGTAAACTAATACTGTATAAG
59.416
42.308
26.12
0.00
35.11
1.73
1961
1989
4.584325
TCCCGCGGTAAACTAATACTGTAT
59.416
41.667
26.12
0.00
35.11
2.29
1962
1990
3.951037
TCCCGCGGTAAACTAATACTGTA
59.049
43.478
26.12
0.00
35.11
2.74
1963
1991
2.760092
TCCCGCGGTAAACTAATACTGT
59.240
45.455
26.12
0.00
35.11
3.55
1964
1992
3.181483
ACTCCCGCGGTAAACTAATACTG
60.181
47.826
26.12
3.34
35.64
2.74
1965
1993
3.026694
ACTCCCGCGGTAAACTAATACT
58.973
45.455
26.12
0.00
0.00
2.12
1966
1994
3.443099
ACTCCCGCGGTAAACTAATAC
57.557
47.619
26.12
0.00
0.00
1.89
1967
1995
4.207165
ACTACTCCCGCGGTAAACTAATA
58.793
43.478
26.12
3.83
0.00
0.98
1971
1999
1.745653
GTACTACTCCCGCGGTAAACT
59.254
52.381
26.12
3.97
0.00
2.66
1972
2000
1.745653
AGTACTACTCCCGCGGTAAAC
59.254
52.381
26.12
11.70
0.00
2.01
1973
2001
2.128771
AGTACTACTCCCGCGGTAAA
57.871
50.000
26.12
8.25
0.00
2.01
1974
2002
2.943033
GTTAGTACTACTCCCGCGGTAA
59.057
50.000
26.12
11.11
0.00
2.85
1976
2004
1.340017
TGTTAGTACTACTCCCGCGGT
60.340
52.381
26.12
8.42
0.00
5.68
1979
2007
4.446994
AGTTTGTTAGTACTACTCCCGC
57.553
45.455
0.91
0.00
0.00
6.13
1980
2008
7.542025
ACAATAGTTTGTTAGTACTACTCCCG
58.458
38.462
0.91
0.00
43.57
5.14
1981
2009
9.794685
GTACAATAGTTTGTTAGTACTACTCCC
57.205
37.037
0.91
0.00
43.57
4.30
2028
2154
6.804534
TTGCAACGAAAGAATGTTAAACAG
57.195
33.333
0.00
0.00
0.00
3.16
2047
2173
9.791820
CTGAATGAGTGAAAATTATACATTGCA
57.208
29.630
0.00
0.00
0.00
4.08
2218
2344
1.625818
TCCTCCTCTTCCACAAGCTTC
59.374
52.381
0.00
0.00
0.00
3.86
2988
3114
8.593492
TGAACTTATAATCGATCATTCCTGTG
57.407
34.615
0.00
0.00
0.00
3.66
3217
3343
1.203038
TCATGGTCACAGGGCAACAAT
60.203
47.619
0.00
0.00
39.74
2.71
3316
3442
4.526650
TCAAGAGTGTCTGCTTGGTATACA
59.473
41.667
5.01
0.00
41.31
2.29
3457
3583
7.227512
GGGGATTCTGTTGATCACAAATACTAG
59.772
40.741
0.00
0.00
37.77
2.57
3549
3675
1.139654
TGTTAGCATGGCAGCTCTAGG
59.860
52.381
13.45
0.00
45.26
3.02
3557
3683
4.202212
ACGATATAGTGTGTTAGCATGGCA
60.202
41.667
0.00
0.00
0.00
4.92
3819
3957
8.050778
TGTAACCAAACATTCTCCATATCAAC
57.949
34.615
0.00
0.00
0.00
3.18
3831
3969
2.609244
GCGGTGCATGTAACCAAACATT
60.609
45.455
16.82
0.00
38.01
2.71
3832
3970
1.067915
GCGGTGCATGTAACCAAACAT
60.068
47.619
16.82
0.00
40.75
2.71
3874
4013
2.771943
CTCAGCCAGACCTAAATGGGTA
59.228
50.000
0.00
0.00
45.26
3.69
4019
4159
0.312416
TGTATGCAACCAAACACCGC
59.688
50.000
0.00
0.00
0.00
5.68
4081
4221
2.486203
CGCTGAGACGCTCTAGGATAAT
59.514
50.000
8.07
0.00
0.00
1.28
4182
4322
1.148310
CAACTCGCAACTGGTTCGAT
58.852
50.000
0.00
0.00
0.00
3.59
4197
4337
1.071471
CTTCCCTGCGGTGACAACT
59.929
57.895
0.00
0.00
0.00
3.16
4256
4397
4.034258
AGCATGCGCACACTGCAC
62.034
61.111
29.92
7.88
46.57
4.57
4269
4410
2.561419
AGTACACTAACACCGTCAGCAT
59.439
45.455
0.00
0.00
0.00
3.79
4272
4413
3.427233
GCCTAGTACACTAACACCGTCAG
60.427
52.174
0.00
0.00
0.00
3.51
4275
4416
1.821136
GGCCTAGTACACTAACACCGT
59.179
52.381
0.00
0.00
0.00
4.83
4279
4420
0.452987
CGCGGCCTAGTACACTAACA
59.547
55.000
0.00
0.00
0.00
2.41
4302
4443
0.972983
CTTTCCTCTCGGCCTCCTCA
60.973
60.000
0.00
0.00
0.00
3.86
4326
4467
0.603975
GTCAGACTTCACTGCCACCC
60.604
60.000
0.00
0.00
37.75
4.61
4335
4476
0.315251
CTGTGCCTCGTCAGACTTCA
59.685
55.000
0.00
0.00
34.02
3.02
4336
4477
0.598562
TCTGTGCCTCGTCAGACTTC
59.401
55.000
0.00
0.00
36.04
3.01
4337
4478
0.600557
CTCTGTGCCTCGTCAGACTT
59.399
55.000
0.00
0.00
36.04
3.01
4338
4479
1.247419
CCTCTGTGCCTCGTCAGACT
61.247
60.000
0.00
0.00
36.04
3.24
4339
4480
1.214062
CCTCTGTGCCTCGTCAGAC
59.786
63.158
0.00
0.00
36.04
3.51
4340
4481
0.539669
TTCCTCTGTGCCTCGTCAGA
60.540
55.000
0.00
0.00
38.20
3.27
4341
4482
0.108898
CTTCCTCTGTGCCTCGTCAG
60.109
60.000
0.00
0.00
0.00
3.51
4342
4483
1.967535
CTTCCTCTGTGCCTCGTCA
59.032
57.895
0.00
0.00
0.00
4.35
4343
4484
1.446966
GCTTCCTCTGTGCCTCGTC
60.447
63.158
0.00
0.00
0.00
4.20
4344
4485
2.659610
GCTTCCTCTGTGCCTCGT
59.340
61.111
0.00
0.00
0.00
4.18
4345
4486
2.507992
CGCTTCCTCTGTGCCTCG
60.508
66.667
0.00
0.00
0.00
4.63
4346
4487
2.125350
CCGCTTCCTCTGTGCCTC
60.125
66.667
0.00
0.00
0.00
4.70
4347
4488
2.925170
ACCGCTTCCTCTGTGCCT
60.925
61.111
0.00
0.00
0.00
4.75
4348
4489
2.743928
CACCGCTTCCTCTGTGCC
60.744
66.667
0.00
0.00
0.00
5.01
4349
4490
3.426568
GCACCGCTTCCTCTGTGC
61.427
66.667
0.00
0.00
46.09
4.57
4350
4491
0.957395
ATTGCACCGCTTCCTCTGTG
60.957
55.000
0.00
0.00
0.00
3.66
4351
4492
0.957395
CATTGCACCGCTTCCTCTGT
60.957
55.000
0.00
0.00
0.00
3.41
4352
4493
1.798735
CATTGCACCGCTTCCTCTG
59.201
57.895
0.00
0.00
0.00
3.35
4353
4494
2.042831
GCATTGCACCGCTTCCTCT
61.043
57.895
3.15
0.00
0.00
3.69
4354
4495
2.486966
GCATTGCACCGCTTCCTC
59.513
61.111
3.15
0.00
0.00
3.71
4355
4496
3.434319
CGCATTGCACCGCTTCCT
61.434
61.111
9.69
0.00
0.00
3.36
4356
4497
3.430862
TCGCATTGCACCGCTTCC
61.431
61.111
9.69
0.00
0.00
3.46
4357
4498
2.202349
GTCGCATTGCACCGCTTC
60.202
61.111
9.69
0.00
0.00
3.86
4358
4499
4.088762
CGTCGCATTGCACCGCTT
62.089
61.111
9.69
0.00
0.00
4.68
4361
4502
3.235292
AACACGTCGCATTGCACCG
62.235
57.895
9.69
11.88
0.00
4.94
4362
4503
1.725625
CAACACGTCGCATTGCACC
60.726
57.895
9.69
0.00
0.00
5.01
4363
4504
1.725625
CCAACACGTCGCATTGCAC
60.726
57.895
9.69
5.43
0.00
4.57
4364
4505
2.636462
CCAACACGTCGCATTGCA
59.364
55.556
9.69
0.00
0.00
4.08
4365
4506
2.126888
CCCAACACGTCGCATTGC
60.127
61.111
0.00
0.00
0.00
3.56
4366
4507
1.082169
CACCCAACACGTCGCATTG
60.082
57.895
0.00
0.00
0.00
2.82
4367
4508
2.258013
CCACCCAACACGTCGCATT
61.258
57.895
0.00
0.00
0.00
3.56
4368
4509
2.668212
CCACCCAACACGTCGCAT
60.668
61.111
0.00
0.00
0.00
4.73
4369
4510
4.164087
ACCACCCAACACGTCGCA
62.164
61.111
0.00
0.00
0.00
5.10
4370
4511
3.645975
CACCACCCAACACGTCGC
61.646
66.667
0.00
0.00
0.00
5.19
4371
4512
1.768112
GAACACCACCCAACACGTCG
61.768
60.000
0.00
0.00
0.00
5.12
4372
4513
1.768112
CGAACACCACCCAACACGTC
61.768
60.000
0.00
0.00
0.00
4.34
4373
4514
1.816259
CGAACACCACCCAACACGT
60.816
57.895
0.00
0.00
0.00
4.49
4374
4515
1.816259
ACGAACACCACCCAACACG
60.816
57.895
0.00
0.00
0.00
4.49
4375
4516
0.745128
TCACGAACACCACCCAACAC
60.745
55.000
0.00
0.00
0.00
3.32
4376
4517
0.035343
TTCACGAACACCACCCAACA
60.035
50.000
0.00
0.00
0.00
3.33
4377
4518
0.661020
CTTCACGAACACCACCCAAC
59.339
55.000
0.00
0.00
0.00
3.77
4378
4519
0.253610
ACTTCACGAACACCACCCAA
59.746
50.000
0.00
0.00
0.00
4.12
4379
4520
0.179067
GACTTCACGAACACCACCCA
60.179
55.000
0.00
0.00
0.00
4.51
4380
4521
0.106149
AGACTTCACGAACACCACCC
59.894
55.000
0.00
0.00
0.00
4.61
4381
4522
1.202486
TCAGACTTCACGAACACCACC
60.202
52.381
0.00
0.00
0.00
4.61
4382
4523
1.859080
GTCAGACTTCACGAACACCAC
59.141
52.381
0.00
0.00
0.00
4.16
4383
4524
1.535226
CGTCAGACTTCACGAACACCA
60.535
52.381
0.00
0.00
38.32
4.17
4384
4525
1.129326
CGTCAGACTTCACGAACACC
58.871
55.000
0.00
0.00
38.32
4.16
4385
4526
2.044860
CTCGTCAGACTTCACGAACAC
58.955
52.381
7.61
0.00
44.08
3.32
4386
4527
1.001706
CCTCGTCAGACTTCACGAACA
60.002
52.381
7.61
0.00
44.08
3.18
4387
4528
1.687628
CCTCGTCAGACTTCACGAAC
58.312
55.000
7.61
0.00
44.08
3.95
4388
4529
0.039437
GCCTCGTCAGACTTCACGAA
60.039
55.000
7.61
0.00
44.08
3.85
4389
4530
1.579932
GCCTCGTCAGACTTCACGA
59.420
57.895
0.00
6.31
42.61
4.35
4390
4531
1.797933
CGCCTCGTCAGACTTCACG
60.798
63.158
0.00
0.00
37.36
4.35
4391
4532
2.089349
GCGCCTCGTCAGACTTCAC
61.089
63.158
0.00
0.00
0.00
3.18
4392
4533
2.258591
GCGCCTCGTCAGACTTCA
59.741
61.111
0.00
0.00
0.00
3.02
4393
4534
2.507324
GGCGCCTCGTCAGACTTC
60.507
66.667
22.15
0.00
0.00
3.01
4394
4535
4.421479
CGGCGCCTCGTCAGACTT
62.421
66.667
26.68
0.00
0.00
3.01
4426
4567
2.435693
CTCCACGAGGATGGGGTCC
61.436
68.421
0.78
0.00
44.70
4.46
4427
4568
3.221222
CTCCACGAGGATGGGGTC
58.779
66.667
0.78
0.00
44.70
4.46
4447
4588
4.394712
GACAGGTCGTGGGCCCAG
62.395
72.222
29.55
19.78
0.00
4.45
4465
4606
2.126424
GTCTCTGCGACGGTCACC
60.126
66.667
9.10
0.00
32.04
4.02
4500
4641
0.670854
GAACTCCCTGTCAAGGCGAC
60.671
60.000
0.00
0.00
42.96
5.19
4501
4642
1.671742
GAACTCCCTGTCAAGGCGA
59.328
57.895
0.00
0.00
42.96
5.54
4502
4643
1.738099
CGAACTCCCTGTCAAGGCG
60.738
63.158
0.00
0.00
42.96
5.52
4503
4644
2.035442
GCGAACTCCCTGTCAAGGC
61.035
63.158
0.00
0.00
42.96
4.35
4504
4645
1.376037
GGCGAACTCCCTGTCAAGG
60.376
63.158
0.00
0.00
44.06
3.61
4505
4646
0.250295
TTGGCGAACTCCCTGTCAAG
60.250
55.000
0.00
0.00
0.00
3.02
4506
4647
0.250295
CTTGGCGAACTCCCTGTCAA
60.250
55.000
0.00
0.00
0.00
3.18
4507
4648
1.118965
TCTTGGCGAACTCCCTGTCA
61.119
55.000
0.00
0.00
0.00
3.58
4508
4649
0.250513
ATCTTGGCGAACTCCCTGTC
59.749
55.000
0.00
0.00
0.00
3.51
4509
4650
0.693049
AATCTTGGCGAACTCCCTGT
59.307
50.000
0.00
0.00
0.00
4.00
4510
4651
2.691409
TAATCTTGGCGAACTCCCTG
57.309
50.000
0.00
0.00
0.00
4.45
4511
4652
2.092914
CCTTAATCTTGGCGAACTCCCT
60.093
50.000
0.00
0.00
0.00
4.20
4512
4653
2.093128
TCCTTAATCTTGGCGAACTCCC
60.093
50.000
0.00
0.00
0.00
4.30
4513
4654
3.198872
CTCCTTAATCTTGGCGAACTCC
58.801
50.000
0.00
0.00
0.00
3.85
4514
4655
3.118738
TCCTCCTTAATCTTGGCGAACTC
60.119
47.826
0.00
0.00
0.00
3.01
4515
4656
2.838202
TCCTCCTTAATCTTGGCGAACT
59.162
45.455
0.00
0.00
0.00
3.01
4516
4657
3.198872
CTCCTCCTTAATCTTGGCGAAC
58.801
50.000
0.00
0.00
0.00
3.95
4517
4658
2.838202
ACTCCTCCTTAATCTTGGCGAA
59.162
45.455
0.00
0.00
0.00
4.70
4518
4659
2.168521
CACTCCTCCTTAATCTTGGCGA
59.831
50.000
0.00
0.00
0.00
5.54
4519
4660
2.555199
CACTCCTCCTTAATCTTGGCG
58.445
52.381
0.00
0.00
0.00
5.69
4520
4661
2.239907
ACCACTCCTCCTTAATCTTGGC
59.760
50.000
0.00
0.00
0.00
4.52
4521
4662
3.430929
CGACCACTCCTCCTTAATCTTGG
60.431
52.174
0.00
0.00
0.00
3.61
4522
4663
3.786635
CGACCACTCCTCCTTAATCTTG
58.213
50.000
0.00
0.00
0.00
3.02
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.