Multiple sequence alignment - TraesCS1D01G126300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G126300 chr1D 100.000 6260 0 0 1 6260 137442718 137436459 0.000000e+00 11561.0
1 TraesCS1D01G126300 chr1D 94.805 462 21 2 1 459 250740937 250741398 0.000000e+00 717.0
2 TraesCS1D01G126300 chr1D 94.889 450 21 1 1 448 19874787 19875236 0.000000e+00 702.0
3 TraesCS1D01G126300 chr1A 95.345 3437 68 22 449 3826 155691901 155695304 0.000000e+00 5376.0
4 TraesCS1D01G126300 chr1A 92.955 951 36 12 5320 6260 155697270 155698199 0.000000e+00 1356.0
5 TraesCS1D01G126300 chr1A 98.758 483 6 0 4791 5273 155696374 155696856 0.000000e+00 859.0
6 TraesCS1D01G126300 chr1A 98.643 442 4 1 3812 4251 155695425 155695866 0.000000e+00 782.0
7 TraesCS1D01G126300 chr1A 99.010 404 4 0 4391 4794 155695925 155696328 0.000000e+00 725.0
8 TraesCS1D01G126300 chr1A 100.000 38 0 0 4498 4535 155695910 155695873 3.130000e-08 71.3
9 TraesCS1D01G126300 chr1B 94.804 2425 63 20 474 2859 209135177 209132777 0.000000e+00 3722.0
10 TraesCS1D01G126300 chr1B 92.720 1250 37 16 4794 6033 209130502 209129297 0.000000e+00 1755.0
11 TraesCS1D01G126300 chr1B 96.548 985 24 6 3812 4792 209131531 209130553 0.000000e+00 1622.0
12 TraesCS1D01G126300 chr1B 94.024 753 19 8 3076 3826 209132380 209131652 0.000000e+00 1118.0
13 TraesCS1D01G126300 chr1B 94.678 451 22 1 1 449 305284422 305284872 0.000000e+00 699.0
14 TraesCS1D01G126300 chr1B 97.717 219 5 0 2860 3078 209132691 209132473 1.650000e-100 377.0
15 TraesCS1D01G126300 chrUn 95.323 449 20 1 1 448 115110217 115109769 0.000000e+00 712.0
16 TraesCS1D01G126300 chr5B 95.111 450 20 1 1 448 318173249 318172800 0.000000e+00 708.0
17 TraesCS1D01G126300 chr4D 95.682 440 17 1 11 448 453054137 453054576 0.000000e+00 706.0
18 TraesCS1D01G126300 chr3D 94.889 450 21 1 1 448 63763650 63764099 0.000000e+00 702.0
19 TraesCS1D01G126300 chr3D 94.457 451 23 1 1 449 448262806 448263256 0.000000e+00 693.0
20 TraesCS1D01G126300 chr3D 87.342 158 20 0 3954 4111 130930455 130930612 1.390000e-41 182.0
21 TraesCS1D01G126300 chr7D 93.886 458 26 1 5 460 136707701 136708158 0.000000e+00 689.0
22 TraesCS1D01G126300 chr3B 87.342 158 20 0 3954 4111 187349623 187349780 1.390000e-41 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G126300 chr1D 137436459 137442718 6259 True 11561.0 11561 100.0000 1 6260 1 chr1D.!!$R1 6259
1 TraesCS1D01G126300 chr1A 155691901 155698199 6298 False 1819.6 5376 96.9422 449 6260 5 chr1A.!!$F1 5811
2 TraesCS1D01G126300 chr1B 209129297 209135177 5880 True 1718.8 3722 95.1626 474 6033 5 chr1B.!!$R1 5559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
126 127 0.032130 GCTAGGCGCTGCACTGTATA 59.968 55.000 7.64 0.0 35.14 1.47 F
168 169 0.035458 GCTGGACTAGTGGTTGCACT 59.965 55.000 0.00 0.0 39.08 4.40 F
384 385 0.036765 AAGGTGAGCCGCGTGAAATA 60.037 50.000 4.92 0.0 40.50 1.40 F
386 387 1.014352 GGTGAGCCGCGTGAAATAAT 58.986 50.000 4.92 0.0 0.00 1.28 F
478 479 1.066002 CGTATTTGGCTTGCAGATGGG 59.934 52.381 0.00 0.0 0.00 4.00 F
479 480 1.113788 TATTTGGCTTGCAGATGGGC 58.886 50.000 0.00 0.0 0.00 5.36 F
537 548 1.187087 CCAGTCTCGAAGGGCTTACT 58.813 55.000 0.00 0.0 0.00 2.24 F
572 583 1.291877 CCGGCGAGGTCAAACTCAAG 61.292 60.000 9.30 0.0 37.34 3.02 F
782 802 1.884926 CTTTCCGAGCGAGCCATCC 60.885 63.158 0.00 0.0 0.00 3.51 F
3808 4061 0.808755 GTAATGGGCACTTTCGGGTG 59.191 55.000 0.00 0.0 39.91 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 1714 1.129064 GAATTGCAGCCAAATTTGCCG 59.871 47.619 12.92 1.41 39.54 5.69 R
1899 1951 4.216708 TGCCATCATGCAATCATTTAGGA 58.783 39.130 0.00 0.00 38.56 2.94 R
2234 2289 2.170607 ACCGCTGCTGTTTATCATAGGT 59.829 45.455 0.00 0.00 0.00 3.08 R
2710 2769 7.926555 GGGATGTGGGATAGATGTATTTATACG 59.073 40.741 0.00 0.00 36.06 3.06 R
3282 3534 7.224753 CGCCTATCTTCTATGCTAGTTTTGAAA 59.775 37.037 0.00 0.00 0.00 2.69 R
3307 3559 2.946990 AGGACCTGTTTTTGGTTACACG 59.053 45.455 0.00 0.00 38.03 4.49 R
3701 3954 6.418057 AGAGAGGATTACAATTAGCTCTGG 57.582 41.667 0.00 0.00 30.93 3.86 R
3803 4056 7.535139 AGAAATTTAAACATATCACACACCCG 58.465 34.615 0.00 0.00 0.00 5.28 R
4306 4697 8.499403 TGCAAATGTACTTACAGCACATAATA 57.501 30.769 0.00 0.00 39.92 0.98 R
5567 6382 0.098728 AATGATGTAAGTTGCCGCGC 59.901 50.000 0.00 0.00 0.00 6.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.006772 GCGCCATACTACACTGTGC 58.993 57.895 7.90 0.00 0.00 4.57
19 20 0.739462 GCGCCATACTACACTGTGCA 60.739 55.000 7.90 0.00 0.00 4.57
20 21 1.720805 CGCCATACTACACTGTGCAA 58.279 50.000 7.90 0.00 0.00 4.08
21 22 1.393539 CGCCATACTACACTGTGCAAC 59.606 52.381 7.90 0.00 37.35 4.17
22 23 1.393539 GCCATACTACACTGTGCAACG 59.606 52.381 7.90 0.00 42.39 4.10
23 24 1.393539 CCATACTACACTGTGCAACGC 59.606 52.381 7.90 0.00 42.39 4.84
24 25 1.393539 CATACTACACTGTGCAACGCC 59.606 52.381 7.90 0.00 42.39 5.68
25 26 0.677288 TACTACACTGTGCAACGCCT 59.323 50.000 7.90 0.00 42.39 5.52
26 27 0.600255 ACTACACTGTGCAACGCCTC 60.600 55.000 7.90 0.00 42.39 4.70
27 28 1.617755 CTACACTGTGCAACGCCTCG 61.618 60.000 7.90 0.00 42.39 4.63
28 29 4.374702 CACTGTGCAACGCCTCGC 62.375 66.667 0.00 0.00 42.39 5.03
29 30 4.908687 ACTGTGCAACGCCTCGCA 62.909 61.111 0.00 0.00 42.39 5.10
30 31 4.081030 CTGTGCAACGCCTCGCAG 62.081 66.667 0.00 0.00 42.39 5.18
31 32 4.600576 TGTGCAACGCCTCGCAGA 62.601 61.111 0.00 0.00 42.39 4.26
32 33 3.121030 GTGCAACGCCTCGCAGAT 61.121 61.111 0.00 0.00 39.20 2.90
33 34 1.809619 GTGCAACGCCTCGCAGATA 60.810 57.895 0.00 0.00 39.20 1.98
34 35 1.519234 TGCAACGCCTCGCAGATAG 60.519 57.895 0.00 0.00 33.89 2.08
35 36 2.240500 GCAACGCCTCGCAGATAGG 61.241 63.158 0.00 0.00 33.89 2.57
53 54 2.507102 CGCTACACGCCTGGACAG 60.507 66.667 0.00 0.00 34.21 3.51
54 55 2.815647 GCTACACGCCTGGACAGC 60.816 66.667 0.00 0.00 0.00 4.40
61 62 4.030452 GCCTGGACAGCGTTGCAC 62.030 66.667 0.00 0.00 0.00 4.57
62 63 3.357079 CCTGGACAGCGTTGCACC 61.357 66.667 0.00 4.13 0.00 5.01
63 64 3.357079 CTGGACAGCGTTGCACCC 61.357 66.667 12.00 6.37 0.00 4.61
64 65 4.947147 TGGACAGCGTTGCACCCC 62.947 66.667 12.00 4.23 0.00 4.95
65 66 4.947147 GGACAGCGTTGCACCCCA 62.947 66.667 0.00 0.00 0.00 4.96
66 67 3.357079 GACAGCGTTGCACCCCAG 61.357 66.667 0.00 0.00 0.00 4.45
67 68 3.825160 GACAGCGTTGCACCCCAGA 62.825 63.158 0.00 0.00 0.00 3.86
68 69 3.357079 CAGCGTTGCACCCCAGAC 61.357 66.667 0.00 0.00 0.00 3.51
69 70 3.560251 AGCGTTGCACCCCAGACT 61.560 61.111 0.00 0.00 0.00 3.24
70 71 3.357079 GCGTTGCACCCCAGACTG 61.357 66.667 0.00 0.00 0.00 3.51
71 72 3.357079 CGTTGCACCCCAGACTGC 61.357 66.667 0.00 0.00 0.00 4.40
72 73 2.985847 GTTGCACCCCAGACTGCC 60.986 66.667 0.00 0.00 31.97 4.85
73 74 3.177884 TTGCACCCCAGACTGCCT 61.178 61.111 0.00 0.00 31.97 4.75
74 75 1.845664 TTGCACCCCAGACTGCCTA 60.846 57.895 0.00 0.00 31.97 3.93
75 76 1.422977 TTGCACCCCAGACTGCCTAA 61.423 55.000 0.00 0.00 31.97 2.69
76 77 1.378762 GCACCCCAGACTGCCTAAA 59.621 57.895 0.00 0.00 0.00 1.85
77 78 0.251165 GCACCCCAGACTGCCTAAAA 60.251 55.000 0.00 0.00 0.00 1.52
78 79 1.616994 GCACCCCAGACTGCCTAAAAT 60.617 52.381 0.00 0.00 0.00 1.82
79 80 2.807676 CACCCCAGACTGCCTAAAATT 58.192 47.619 0.00 0.00 0.00 1.82
80 81 3.165071 CACCCCAGACTGCCTAAAATTT 58.835 45.455 0.00 0.00 0.00 1.82
81 82 3.056607 CACCCCAGACTGCCTAAAATTTG 60.057 47.826 0.00 0.00 0.00 2.32
82 83 2.094026 CCCCAGACTGCCTAAAATTTGC 60.094 50.000 0.00 0.00 0.00 3.68
83 84 2.827921 CCCAGACTGCCTAAAATTTGCT 59.172 45.455 0.00 0.00 0.00 3.91
84 85 4.016444 CCCAGACTGCCTAAAATTTGCTA 58.984 43.478 0.00 0.00 0.00 3.49
85 86 4.462483 CCCAGACTGCCTAAAATTTGCTAA 59.538 41.667 0.00 0.00 0.00 3.09
86 87 5.393461 CCCAGACTGCCTAAAATTTGCTAAG 60.393 44.000 0.00 0.00 0.00 2.18
87 88 5.183904 CCAGACTGCCTAAAATTTGCTAAGT 59.816 40.000 0.00 0.00 0.00 2.24
88 89 6.317857 CAGACTGCCTAAAATTTGCTAAGTC 58.682 40.000 9.61 9.61 0.00 3.01
89 90 6.003950 AGACTGCCTAAAATTTGCTAAGTCA 58.996 36.000 15.69 0.63 0.00 3.41
90 91 6.660949 AGACTGCCTAAAATTTGCTAAGTCAT 59.339 34.615 15.69 5.05 0.00 3.06
91 92 7.177392 AGACTGCCTAAAATTTGCTAAGTCATT 59.823 33.333 15.69 1.72 0.00 2.57
92 93 7.092716 ACTGCCTAAAATTTGCTAAGTCATTG 58.907 34.615 0.00 0.00 0.00 2.82
93 94 6.991938 TGCCTAAAATTTGCTAAGTCATTGT 58.008 32.000 0.00 0.00 0.00 2.71
94 95 6.867816 TGCCTAAAATTTGCTAAGTCATTGTG 59.132 34.615 0.00 0.00 0.00 3.33
95 96 6.183360 GCCTAAAATTTGCTAAGTCATTGTGC 60.183 38.462 0.00 0.00 0.00 4.57
96 97 6.867816 CCTAAAATTTGCTAAGTCATTGTGCA 59.132 34.615 0.00 0.00 0.00 4.57
97 98 6.774354 AAAATTTGCTAAGTCATTGTGCAG 57.226 33.333 0.00 0.00 33.13 4.41
98 99 5.710513 AATTTGCTAAGTCATTGTGCAGA 57.289 34.783 0.00 0.00 33.13 4.26
99 100 4.754372 TTTGCTAAGTCATTGTGCAGAG 57.246 40.909 0.00 0.00 33.13 3.35
100 101 2.079158 TGCTAAGTCATTGTGCAGAGC 58.921 47.619 0.00 0.00 0.00 4.09
101 102 1.399791 GCTAAGTCATTGTGCAGAGCC 59.600 52.381 0.00 0.00 0.00 4.70
102 103 2.938756 GCTAAGTCATTGTGCAGAGCCT 60.939 50.000 0.00 0.00 0.00 4.58
103 104 3.679917 GCTAAGTCATTGTGCAGAGCCTA 60.680 47.826 0.00 0.00 0.00 3.93
104 105 3.423539 AAGTCATTGTGCAGAGCCTAA 57.576 42.857 0.00 0.00 0.00 2.69
105 106 2.983229 AGTCATTGTGCAGAGCCTAAG 58.017 47.619 0.00 0.00 0.00 2.18
106 107 2.568956 AGTCATTGTGCAGAGCCTAAGA 59.431 45.455 0.00 0.00 0.00 2.10
107 108 2.935201 GTCATTGTGCAGAGCCTAAGAG 59.065 50.000 0.00 0.00 0.00 2.85
108 109 1.669779 CATTGTGCAGAGCCTAAGAGC 59.330 52.381 0.00 0.00 0.00 4.09
110 111 1.852633 TGTGCAGAGCCTAAGAGCTA 58.147 50.000 0.00 0.00 45.15 3.32
111 112 1.753649 TGTGCAGAGCCTAAGAGCTAG 59.246 52.381 0.00 0.00 45.15 3.42
124 125 2.184322 GCTAGGCGCTGCACTGTA 59.816 61.111 7.64 0.00 35.14 2.74
125 126 1.227380 GCTAGGCGCTGCACTGTAT 60.227 57.895 7.64 0.00 35.14 2.29
126 127 0.032130 GCTAGGCGCTGCACTGTATA 59.968 55.000 7.64 0.00 35.14 1.47
127 128 1.932604 GCTAGGCGCTGCACTGTATAG 60.933 57.143 7.64 0.00 35.14 1.31
128 129 1.338337 CTAGGCGCTGCACTGTATAGT 59.662 52.381 7.64 0.00 37.75 2.12
135 136 3.309675 CACTGTATAGTGCGGCGC 58.690 61.111 27.44 27.44 46.93 6.53
136 137 2.106332 ACTGTATAGTGCGGCGCC 59.894 61.111 30.82 19.07 35.34 6.53
137 138 2.417516 CTGTATAGTGCGGCGCCT 59.582 61.111 30.82 26.02 0.00 5.52
138 139 1.105167 ACTGTATAGTGCGGCGCCTA 61.105 55.000 30.82 27.23 35.34 3.93
139 140 0.387367 CTGTATAGTGCGGCGCCTAG 60.387 60.000 30.82 15.05 0.00 3.02
152 153 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
153 154 2.416678 CTAGCTCTCAGGCGCTGG 59.583 66.667 7.64 0.00 37.05 4.85
154 155 2.043953 TAGCTCTCAGGCGCTGGA 60.044 61.111 7.64 4.15 37.05 3.86
155 156 2.348605 CTAGCTCTCAGGCGCTGGAC 62.349 65.000 7.64 0.00 36.95 4.02
156 157 2.845638 TAGCTCTCAGGCGCTGGACT 62.846 60.000 7.64 1.77 37.05 3.85
157 158 2.418910 GCTCTCAGGCGCTGGACTA 61.419 63.158 7.64 0.00 31.51 2.59
158 159 1.732917 CTCTCAGGCGCTGGACTAG 59.267 63.158 7.64 0.09 31.51 2.57
159 160 1.000771 TCTCAGGCGCTGGACTAGT 60.001 57.895 7.64 0.00 31.51 2.57
160 161 1.140589 CTCAGGCGCTGGACTAGTG 59.859 63.158 7.64 0.00 39.95 2.74
161 162 2.185350 CAGGCGCTGGACTAGTGG 59.815 66.667 7.64 0.00 37.39 4.00
162 163 2.283966 AGGCGCTGGACTAGTGGT 60.284 61.111 7.64 0.00 37.39 4.16
163 164 1.913762 AGGCGCTGGACTAGTGGTT 60.914 57.895 7.64 0.00 37.39 3.67
164 165 1.741770 GGCGCTGGACTAGTGGTTG 60.742 63.158 7.64 0.00 37.39 3.77
165 166 2.391389 GCGCTGGACTAGTGGTTGC 61.391 63.158 0.00 0.00 37.39 4.17
166 167 1.005037 CGCTGGACTAGTGGTTGCA 60.005 57.895 0.00 0.00 33.19 4.08
167 168 1.291877 CGCTGGACTAGTGGTTGCAC 61.292 60.000 0.00 0.00 33.19 4.57
168 169 0.035458 GCTGGACTAGTGGTTGCACT 59.965 55.000 0.00 0.00 39.08 4.40
169 170 1.275291 GCTGGACTAGTGGTTGCACTA 59.725 52.381 0.00 0.00 36.68 2.74
170 171 2.093447 GCTGGACTAGTGGTTGCACTAT 60.093 50.000 0.00 0.00 37.09 2.12
171 172 3.132289 GCTGGACTAGTGGTTGCACTATA 59.868 47.826 0.00 0.00 37.09 1.31
172 173 4.382685 GCTGGACTAGTGGTTGCACTATAA 60.383 45.833 0.00 0.00 37.09 0.98
173 174 5.730550 CTGGACTAGTGGTTGCACTATAAA 58.269 41.667 0.00 0.00 37.09 1.40
174 175 6.116711 TGGACTAGTGGTTGCACTATAAAA 57.883 37.500 0.00 0.00 37.09 1.52
175 176 6.717289 TGGACTAGTGGTTGCACTATAAAAT 58.283 36.000 0.00 0.00 37.09 1.82
176 177 6.597672 TGGACTAGTGGTTGCACTATAAAATG 59.402 38.462 0.00 0.00 37.09 2.32
177 178 6.821665 GGACTAGTGGTTGCACTATAAAATGA 59.178 38.462 0.00 0.00 37.09 2.57
178 179 7.335924 GGACTAGTGGTTGCACTATAAAATGAA 59.664 37.037 0.00 0.00 37.09 2.57
179 180 8.268850 ACTAGTGGTTGCACTATAAAATGAAG 57.731 34.615 0.00 0.00 37.09 3.02
180 181 5.954335 AGTGGTTGCACTATAAAATGAAGC 58.046 37.500 0.00 0.00 32.97 3.86
181 182 5.476599 AGTGGTTGCACTATAAAATGAAGCA 59.523 36.000 0.00 0.00 32.97 3.91
182 183 6.015519 AGTGGTTGCACTATAAAATGAAGCAA 60.016 34.615 0.00 0.00 38.07 3.91
185 186 5.973899 TGCACTATAAAATGAAGCAACCA 57.026 34.783 0.00 0.00 0.00 3.67
186 187 5.708948 TGCACTATAAAATGAAGCAACCAC 58.291 37.500 0.00 0.00 0.00 4.16
187 188 5.476599 TGCACTATAAAATGAAGCAACCACT 59.523 36.000 0.00 0.00 0.00 4.00
188 189 6.657117 TGCACTATAAAATGAAGCAACCACTA 59.343 34.615 0.00 0.00 0.00 2.74
189 190 7.148255 TGCACTATAAAATGAAGCAACCACTAG 60.148 37.037 0.00 0.00 0.00 2.57
190 191 7.148239 GCACTATAAAATGAAGCAACCACTAGT 60.148 37.037 0.00 0.00 0.00 2.57
191 192 8.177663 CACTATAAAATGAAGCAACCACTAGTG 58.822 37.037 16.34 16.34 0.00 2.74
192 193 3.923017 AAATGAAGCAACCACTAGTGC 57.077 42.857 17.86 6.14 0.00 4.40
193 194 2.566833 ATGAAGCAACCACTAGTGCA 57.433 45.000 17.86 8.36 0.00 4.57
194 195 2.340210 TGAAGCAACCACTAGTGCAA 57.660 45.000 17.86 0.00 0.00 4.08
195 196 2.862541 TGAAGCAACCACTAGTGCAAT 58.137 42.857 17.86 1.99 0.00 3.56
196 197 2.553602 TGAAGCAACCACTAGTGCAATG 59.446 45.455 17.86 15.18 0.00 2.82
197 198 0.883833 AGCAACCACTAGTGCAATGC 59.116 50.000 25.76 25.76 34.41 3.56
198 199 0.109132 GCAACCACTAGTGCAATGCC 60.109 55.000 24.04 13.00 0.00 4.40
199 200 1.538047 CAACCACTAGTGCAATGCCT 58.462 50.000 17.86 1.90 0.00 4.75
200 201 2.710377 CAACCACTAGTGCAATGCCTA 58.290 47.619 17.86 3.08 0.00 3.93
201 202 2.679837 CAACCACTAGTGCAATGCCTAG 59.320 50.000 17.86 21.12 36.35 3.02
202 203 2.187958 ACCACTAGTGCAATGCCTAGA 58.812 47.619 26.19 0.00 35.00 2.43
203 204 2.571653 ACCACTAGTGCAATGCCTAGAA 59.428 45.455 26.19 0.00 35.00 2.10
204 205 3.201290 CCACTAGTGCAATGCCTAGAAG 58.799 50.000 26.19 19.64 35.00 2.85
205 206 2.611292 CACTAGTGCAATGCCTAGAAGC 59.389 50.000 26.19 2.68 35.00 3.86
206 207 2.503356 ACTAGTGCAATGCCTAGAAGCT 59.497 45.455 26.19 10.07 35.00 3.74
207 208 3.706594 ACTAGTGCAATGCCTAGAAGCTA 59.293 43.478 26.19 9.06 35.00 3.32
208 209 3.191078 AGTGCAATGCCTAGAAGCTAG 57.809 47.619 1.53 0.00 0.00 3.42
209 210 2.158842 AGTGCAATGCCTAGAAGCTAGG 60.159 50.000 14.68 14.68 37.75 3.02
224 225 3.204597 GCTAGGCGCTACACTGTATAG 57.795 52.381 7.64 0.00 35.14 1.31
225 226 2.553172 GCTAGGCGCTACACTGTATAGT 59.447 50.000 7.64 0.00 34.63 2.12
226 227 3.609644 GCTAGGCGCTACACTGTATAGTG 60.610 52.174 17.20 17.20 46.55 2.74
234 235 2.591915 ACTGTATAGTGTGGCGCCT 58.408 52.632 29.70 9.99 35.34 5.52
235 236 1.771565 ACTGTATAGTGTGGCGCCTA 58.228 50.000 29.70 14.39 35.34 3.93
236 237 1.681793 ACTGTATAGTGTGGCGCCTAG 59.318 52.381 29.70 13.13 35.34 3.02
237 238 4.165507 ACTGTATAGTGTGGCGCCTAGC 62.166 54.545 29.70 17.93 39.66 3.42
249 250 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
250 251 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
251 252 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
252 253 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
254 255 3.117171 CTCTCAGGCGCTGCACAC 61.117 66.667 7.64 0.00 0.00 3.82
255 256 3.586461 CTCTCAGGCGCTGCACACT 62.586 63.158 7.64 0.00 0.00 3.55
256 257 3.420606 CTCAGGCGCTGCACACTG 61.421 66.667 7.64 4.89 0.00 3.66
257 258 3.871248 CTCAGGCGCTGCACACTGA 62.871 63.158 7.64 9.54 37.61 3.41
258 259 3.720193 CAGGCGCTGCACACTGAC 61.720 66.667 7.64 0.00 32.86 3.51
259 260 3.933722 AGGCGCTGCACACTGACT 61.934 61.111 7.64 0.00 0.00 3.41
260 261 2.974698 GGCGCTGCACACTGACTT 60.975 61.111 7.64 0.00 0.00 3.01
261 262 1.667830 GGCGCTGCACACTGACTTA 60.668 57.895 7.64 0.00 0.00 2.24
262 263 1.630244 GGCGCTGCACACTGACTTAG 61.630 60.000 7.64 0.00 0.00 2.18
263 264 0.946221 GCGCTGCACACTGACTTAGT 60.946 55.000 0.00 0.00 41.36 2.24
264 265 1.668919 GCGCTGCACACTGACTTAGTA 60.669 52.381 0.00 0.00 37.60 1.82
265 266 2.672714 CGCTGCACACTGACTTAGTAA 58.327 47.619 0.00 0.00 37.60 2.24
266 267 3.254060 CGCTGCACACTGACTTAGTAAT 58.746 45.455 0.00 0.00 37.60 1.89
267 268 3.679980 CGCTGCACACTGACTTAGTAATT 59.320 43.478 0.00 0.00 37.60 1.40
268 269 4.152402 CGCTGCACACTGACTTAGTAATTT 59.848 41.667 0.00 0.00 37.60 1.82
269 270 5.334105 CGCTGCACACTGACTTAGTAATTTT 60.334 40.000 0.00 0.00 37.60 1.82
270 271 6.080406 GCTGCACACTGACTTAGTAATTTTC 58.920 40.000 0.00 0.00 37.60 2.29
271 272 6.223138 TGCACACTGACTTAGTAATTTTCG 57.777 37.500 0.00 0.00 37.60 3.46
272 273 5.178623 TGCACACTGACTTAGTAATTTTCGG 59.821 40.000 0.00 0.00 37.60 4.30
273 274 5.407387 GCACACTGACTTAGTAATTTTCGGA 59.593 40.000 0.00 0.00 37.60 4.55
274 275 6.092259 GCACACTGACTTAGTAATTTTCGGAT 59.908 38.462 0.00 0.00 37.60 4.18
275 276 7.674240 GCACACTGACTTAGTAATTTTCGGATC 60.674 40.741 0.00 0.00 37.60 3.36
276 277 7.330946 CACACTGACTTAGTAATTTTCGGATCA 59.669 37.037 0.00 0.00 37.60 2.92
277 278 7.331193 ACACTGACTTAGTAATTTTCGGATCAC 59.669 37.037 0.00 0.00 37.60 3.06
278 279 7.330946 CACTGACTTAGTAATTTTCGGATCACA 59.669 37.037 0.00 0.00 37.60 3.58
279 280 7.331193 ACTGACTTAGTAATTTTCGGATCACAC 59.669 37.037 0.00 0.00 38.04 3.82
280 281 6.309494 TGACTTAGTAATTTTCGGATCACACG 59.691 38.462 0.00 0.00 0.00 4.49
281 282 5.579511 ACTTAGTAATTTTCGGATCACACGG 59.420 40.000 0.00 0.00 0.00 4.94
282 283 4.196626 AGTAATTTTCGGATCACACGGA 57.803 40.909 0.00 0.00 0.00 4.69
283 284 4.766375 AGTAATTTTCGGATCACACGGAT 58.234 39.130 0.00 0.00 39.53 4.18
284 285 4.570772 AGTAATTTTCGGATCACACGGATG 59.429 41.667 0.00 0.00 36.00 3.51
285 286 1.083489 TTTTCGGATCACACGGATGC 58.917 50.000 0.00 0.00 40.66 3.91
288 289 3.706140 GGATCACACGGATGCGAC 58.294 61.111 15.49 0.00 36.00 5.19
289 290 1.141881 GGATCACACGGATGCGACT 59.858 57.895 15.49 0.00 36.00 4.18
290 291 1.148157 GGATCACACGGATGCGACTG 61.148 60.000 15.49 4.40 36.00 3.51
291 292 1.148157 GATCACACGGATGCGACTGG 61.148 60.000 15.49 2.12 36.00 4.00
292 293 1.888436 ATCACACGGATGCGACTGGT 61.888 55.000 15.49 0.39 34.06 4.00
293 294 2.094659 CACACGGATGCGACTGGTC 61.095 63.158 15.49 0.00 0.00 4.02
294 295 2.261361 CACGGATGCGACTGGTCA 59.739 61.111 15.49 0.00 0.00 4.02
295 296 1.807165 CACGGATGCGACTGGTCAG 60.807 63.158 15.49 0.00 0.00 3.51
296 297 1.977009 ACGGATGCGACTGGTCAGA 60.977 57.895 15.49 0.00 0.00 3.27
297 298 1.517257 CGGATGCGACTGGTCAGAC 60.517 63.158 0.00 0.00 0.00 3.51
298 299 1.517257 GGATGCGACTGGTCAGACG 60.517 63.158 15.94 15.94 46.27 4.18
299 300 1.213013 GATGCGACTGGTCAGACGT 59.787 57.895 19.69 0.00 45.54 4.34
300 301 1.073216 GATGCGACTGGTCAGACGTG 61.073 60.000 19.69 0.00 45.54 4.49
301 302 1.806461 ATGCGACTGGTCAGACGTGT 61.806 55.000 19.69 9.39 45.54 4.49
302 303 1.167781 TGCGACTGGTCAGACGTGTA 61.168 55.000 19.69 8.02 45.54 2.90
303 304 0.454620 GCGACTGGTCAGACGTGTAG 60.455 60.000 19.69 0.00 45.54 2.74
304 305 0.454620 CGACTGGTCAGACGTGTAGC 60.455 60.000 12.99 0.00 40.61 3.58
306 307 1.801913 CTGGTCAGACGTGTAGCGC 60.802 63.158 0.00 0.00 46.11 5.92
307 308 2.506438 GGTCAGACGTGTAGCGCC 60.506 66.667 2.29 0.00 46.11 6.53
308 309 2.567049 GTCAGACGTGTAGCGCCT 59.433 61.111 2.29 0.00 46.11 5.52
309 310 1.651240 GGTCAGACGTGTAGCGCCTA 61.651 60.000 2.29 0.00 46.11 3.93
310 311 0.381089 GTCAGACGTGTAGCGCCTAT 59.619 55.000 2.29 0.00 46.11 2.57
311 312 0.661552 TCAGACGTGTAGCGCCTATC 59.338 55.000 2.29 0.00 46.11 2.08
312 313 0.663688 CAGACGTGTAGCGCCTATCT 59.336 55.000 2.29 0.00 46.11 1.98
313 314 0.663688 AGACGTGTAGCGCCTATCTG 59.336 55.000 2.29 0.00 46.11 2.90
314 315 0.381089 GACGTGTAGCGCCTATCTGT 59.619 55.000 2.29 0.00 46.11 3.41
315 316 0.100682 ACGTGTAGCGCCTATCTGTG 59.899 55.000 2.29 0.00 46.11 3.66
316 317 0.380733 CGTGTAGCGCCTATCTGTGA 59.619 55.000 2.29 0.00 0.00 3.58
317 318 1.598183 CGTGTAGCGCCTATCTGTGAG 60.598 57.143 2.29 0.00 0.00 3.51
318 319 1.032794 TGTAGCGCCTATCTGTGAGG 58.967 55.000 2.29 0.00 37.12 3.86
324 325 2.682893 CCTATCTGTGAGGCGTTGC 58.317 57.895 0.00 0.00 0.00 4.17
325 326 0.108186 CCTATCTGTGAGGCGTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
326 327 1.002366 CTATCTGTGAGGCGTTGCAC 58.998 55.000 0.00 0.00 35.63 4.57
327 328 0.320050 TATCTGTGAGGCGTTGCACA 59.680 50.000 0.00 0.00 42.25 4.57
329 330 2.189257 TGTGAGGCGTTGCACAGT 59.811 55.556 0.00 0.00 39.86 3.55
330 331 2.179547 TGTGAGGCGTTGCACAGTG 61.180 57.895 0.00 0.00 39.86 3.66
331 332 2.180204 GTGAGGCGTTGCACAGTGT 61.180 57.895 1.61 0.00 35.19 3.55
332 333 0.878523 GTGAGGCGTTGCACAGTGTA 60.879 55.000 1.61 0.00 35.19 2.90
333 334 0.599991 TGAGGCGTTGCACAGTGTAG 60.600 55.000 1.61 0.00 0.00 2.74
334 335 0.600255 GAGGCGTTGCACAGTGTAGT 60.600 55.000 1.61 0.00 0.00 2.73
335 336 0.880278 AGGCGTTGCACAGTGTAGTG 60.880 55.000 1.61 0.00 42.37 2.74
336 337 1.157870 GGCGTTGCACAGTGTAGTGT 61.158 55.000 1.61 0.00 41.52 3.55
338 339 0.581529 CGTTGCACAGTGTAGTGTGG 59.418 55.000 18.52 1.81 46.73 4.17
339 340 0.307760 GTTGCACAGTGTAGTGTGGC 59.692 55.000 18.52 12.34 46.73 5.01
340 341 1.157257 TTGCACAGTGTAGTGTGGCG 61.157 55.000 18.52 0.00 46.73 5.69
341 342 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
342 343 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
343 344 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
344 345 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
345 346 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
346 347 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
347 348 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
348 349 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
349 350 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
350 351 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
358 359 4.351938 CCTTCGTGTCGGGCGTCA 62.352 66.667 0.00 0.00 0.00 4.35
359 360 3.103911 CTTCGTGTCGGGCGTCAC 61.104 66.667 0.00 0.00 0.00 3.67
360 361 3.834447 CTTCGTGTCGGGCGTCACA 62.834 63.158 0.00 0.00 34.69 3.58
361 362 3.215597 TTCGTGTCGGGCGTCACAT 62.216 57.895 0.00 0.00 34.69 3.21
362 363 1.864725 TTCGTGTCGGGCGTCACATA 61.865 55.000 0.00 0.00 34.69 2.29
363 364 1.444724 CGTGTCGGGCGTCACATAA 60.445 57.895 0.00 0.00 34.69 1.90
364 365 1.009903 CGTGTCGGGCGTCACATAAA 61.010 55.000 0.00 0.00 34.69 1.40
365 366 1.149987 GTGTCGGGCGTCACATAAAA 58.850 50.000 0.00 0.00 35.02 1.52
366 367 1.532007 GTGTCGGGCGTCACATAAAAA 59.468 47.619 0.00 0.00 35.02 1.94
367 368 1.801771 TGTCGGGCGTCACATAAAAAG 59.198 47.619 0.00 0.00 0.00 2.27
368 369 1.129811 GTCGGGCGTCACATAAAAAGG 59.870 52.381 0.00 0.00 0.00 3.11
369 370 1.161843 CGGGCGTCACATAAAAAGGT 58.838 50.000 0.00 0.00 0.00 3.50
370 371 1.135803 CGGGCGTCACATAAAAAGGTG 60.136 52.381 0.00 0.00 36.36 4.00
371 372 2.156098 GGGCGTCACATAAAAAGGTGA 58.844 47.619 0.00 0.00 41.44 4.02
372 373 2.161609 GGGCGTCACATAAAAAGGTGAG 59.838 50.000 0.00 0.00 44.05 3.51
373 374 2.414161 GGCGTCACATAAAAAGGTGAGC 60.414 50.000 0.00 0.00 44.05 4.26
374 375 2.414161 GCGTCACATAAAAAGGTGAGCC 60.414 50.000 0.00 0.00 44.05 4.70
375 376 2.159707 CGTCACATAAAAAGGTGAGCCG 60.160 50.000 0.00 0.00 44.05 5.52
376 377 1.810151 TCACATAAAAAGGTGAGCCGC 59.190 47.619 0.00 0.00 39.00 6.53
377 378 0.802494 ACATAAAAAGGTGAGCCGCG 59.198 50.000 0.00 0.00 40.50 6.46
378 379 0.802494 CATAAAAAGGTGAGCCGCGT 59.198 50.000 4.92 0.00 40.50 6.01
379 380 0.802494 ATAAAAAGGTGAGCCGCGTG 59.198 50.000 4.92 0.00 40.50 5.34
380 381 0.249953 TAAAAAGGTGAGCCGCGTGA 60.250 50.000 4.92 0.00 40.50 4.35
381 382 1.098712 AAAAAGGTGAGCCGCGTGAA 61.099 50.000 4.92 0.00 40.50 3.18
382 383 1.098712 AAAAGGTGAGCCGCGTGAAA 61.099 50.000 4.92 0.00 40.50 2.69
383 384 0.889186 AAAGGTGAGCCGCGTGAAAT 60.889 50.000 4.92 0.00 40.50 2.17
384 385 0.036765 AAGGTGAGCCGCGTGAAATA 60.037 50.000 4.92 0.00 40.50 1.40
385 386 0.036765 AGGTGAGCCGCGTGAAATAA 60.037 50.000 4.92 0.00 40.50 1.40
386 387 1.014352 GGTGAGCCGCGTGAAATAAT 58.986 50.000 4.92 0.00 0.00 1.28
387 388 1.400494 GGTGAGCCGCGTGAAATAATT 59.600 47.619 4.92 0.00 0.00 1.40
388 389 2.159435 GGTGAGCCGCGTGAAATAATTT 60.159 45.455 4.92 0.00 0.00 1.82
389 390 3.098636 GTGAGCCGCGTGAAATAATTTC 58.901 45.455 4.92 0.00 40.08 2.17
390 391 2.744741 TGAGCCGCGTGAAATAATTTCA 59.255 40.909 4.92 0.00 46.68 2.69
401 402 6.869315 TGAAATAATTTCACGGACAGTTCA 57.131 33.333 0.00 0.00 44.21 3.18
402 403 7.447374 TGAAATAATTTCACGGACAGTTCAT 57.553 32.000 0.00 0.00 44.21 2.57
403 404 7.881142 TGAAATAATTTCACGGACAGTTCATT 58.119 30.769 0.00 0.00 44.21 2.57
404 405 8.020819 TGAAATAATTTCACGGACAGTTCATTC 58.979 33.333 0.00 0.00 44.21 2.67
405 406 7.687941 AATAATTTCACGGACAGTTCATTCT 57.312 32.000 0.00 0.00 0.00 2.40
406 407 5.362556 AATTTCACGGACAGTTCATTCTG 57.637 39.130 0.00 0.00 40.80 3.02
408 409 2.754472 TCACGGACAGTTCATTCTGTG 58.246 47.619 4.06 4.48 46.81 3.66
410 411 3.685139 ACGGACAGTTCATTCTGTGAT 57.315 42.857 4.06 0.00 46.81 3.06
411 412 4.008074 ACGGACAGTTCATTCTGTGATT 57.992 40.909 4.06 0.00 46.81 2.57
412 413 4.389374 ACGGACAGTTCATTCTGTGATTT 58.611 39.130 4.06 0.00 46.81 2.17
413 414 4.214119 ACGGACAGTTCATTCTGTGATTTG 59.786 41.667 4.06 0.00 46.81 2.32
414 415 4.452114 CGGACAGTTCATTCTGTGATTTGA 59.548 41.667 4.06 0.00 46.81 2.69
415 416 5.122869 CGGACAGTTCATTCTGTGATTTGAT 59.877 40.000 4.06 0.00 46.81 2.57
416 417 6.348786 CGGACAGTTCATTCTGTGATTTGATT 60.349 38.462 4.06 0.00 46.81 2.57
417 418 7.373493 GGACAGTTCATTCTGTGATTTGATTT 58.627 34.615 4.06 0.00 46.81 2.17
418 419 7.540055 GGACAGTTCATTCTGTGATTTGATTTC 59.460 37.037 4.06 0.00 46.81 2.17
419 420 7.944061 ACAGTTCATTCTGTGATTTGATTTCA 58.056 30.769 0.00 0.00 45.40 2.69
420 421 8.582437 ACAGTTCATTCTGTGATTTGATTTCAT 58.418 29.630 0.00 0.00 45.40 2.57
421 422 9.419297 CAGTTCATTCTGTGATTTGATTTCATT 57.581 29.630 0.00 0.00 36.54 2.57
422 423 9.635520 AGTTCATTCTGTGATTTGATTTCATTC 57.364 29.630 0.00 0.00 36.54 2.67
423 424 9.414295 GTTCATTCTGTGATTTGATTTCATTCA 57.586 29.630 0.00 0.00 36.54 2.57
428 429 8.812513 TCTGTGATTTGATTTCATTCATAGGT 57.187 30.769 13.12 0.00 33.05 3.08
429 430 8.896744 TCTGTGATTTGATTTCATTCATAGGTC 58.103 33.333 13.12 0.00 33.05 3.85
430 431 8.578448 TGTGATTTGATTTCATTCATAGGTCA 57.422 30.769 0.00 0.00 0.00 4.02
431 432 9.022884 TGTGATTTGATTTCATTCATAGGTCAA 57.977 29.630 0.00 0.00 0.00 3.18
432 433 9.859427 GTGATTTGATTTCATTCATAGGTCAAA 57.141 29.630 0.00 0.00 38.14 2.69
438 439 9.859427 TGATTTCATTCATAGGTCAAATTTGTC 57.141 29.630 17.47 12.07 0.00 3.18
439 440 9.859427 GATTTCATTCATAGGTCAAATTTGTCA 57.141 29.630 17.47 0.00 0.00 3.58
446 447 8.309163 TCATAGGTCAAATTTGTCAATTTTGC 57.691 30.769 20.61 16.62 40.09 3.68
447 448 7.387397 TCATAGGTCAAATTTGTCAATTTTGCC 59.613 33.333 20.61 21.66 40.09 4.52
476 477 1.402968 AGCGTATTTGGCTTGCAGATG 59.597 47.619 0.00 0.00 37.50 2.90
477 478 1.534595 GCGTATTTGGCTTGCAGATGG 60.535 52.381 0.00 0.00 0.00 3.51
478 479 1.066002 CGTATTTGGCTTGCAGATGGG 59.934 52.381 0.00 0.00 0.00 4.00
479 480 1.113788 TATTTGGCTTGCAGATGGGC 58.886 50.000 0.00 0.00 0.00 5.36
480 481 1.952102 ATTTGGCTTGCAGATGGGCG 61.952 55.000 0.00 0.00 36.28 6.13
500 511 1.274447 GGGGGTCCGCATGTAGTATAC 59.726 57.143 8.40 0.00 43.42 1.47
527 538 2.287788 GGTAACGTGAAACCAGTCTCGA 60.288 50.000 9.47 0.00 37.80 4.04
537 548 1.187087 CCAGTCTCGAAGGGCTTACT 58.813 55.000 0.00 0.00 0.00 2.24
572 583 1.291877 CCGGCGAGGTCAAACTCAAG 61.292 60.000 9.30 0.00 37.34 3.02
622 638 4.939368 CCCAACGCAACCACCGGA 62.939 66.667 9.46 0.00 0.00 5.14
782 802 1.884926 CTTTCCGAGCGAGCCATCC 60.885 63.158 0.00 0.00 0.00 3.51
815 840 2.621668 GGTTCCAATTCCCTCCTCCTTG 60.622 54.545 0.00 0.00 0.00 3.61
1662 1714 3.641906 TCGGTTGGAATCCTCCTATTCTC 59.358 47.826 0.00 0.00 42.94 2.87
1841 1893 2.104963 ACGGCTCATCTAGGAAAATCCC 59.895 50.000 0.00 0.00 37.19 3.85
1896 1948 4.277921 GCTAGGCTATCGGTAGTGTTAAGT 59.722 45.833 4.31 0.00 0.00 2.24
1897 1949 5.471456 GCTAGGCTATCGGTAGTGTTAAGTA 59.529 44.000 4.31 0.00 0.00 2.24
1898 1950 5.764487 AGGCTATCGGTAGTGTTAAGTAC 57.236 43.478 4.31 0.00 0.00 2.73
1899 1951 5.444176 AGGCTATCGGTAGTGTTAAGTACT 58.556 41.667 4.31 0.00 33.39 2.73
1900 1952 5.530543 AGGCTATCGGTAGTGTTAAGTACTC 59.469 44.000 4.31 0.00 33.39 2.59
1901 1953 5.278218 GGCTATCGGTAGTGTTAAGTACTCC 60.278 48.000 4.31 0.00 33.39 3.85
2189 2244 2.903357 CACCCATCACCTCCTCCG 59.097 66.667 0.00 0.00 0.00 4.63
2710 2769 4.082517 TCCATGAGACGATAATAGCTGAGC 60.083 45.833 0.00 0.00 0.00 4.26
3254 3506 4.509970 CACGAAGATTGTGAGTTTACCACA 59.490 41.667 0.00 0.00 42.16 4.17
3307 3559 8.438676 TTTCAAAACTAGCATAGAAGATAGGC 57.561 34.615 0.00 0.00 42.77 3.93
3701 3954 6.908284 TCTTACTCGTTTTGTTTGTGCATAAC 59.092 34.615 0.00 1.46 0.00 1.89
3769 4022 4.154918 GGCAAAGTTCACCTCTGATAACAG 59.845 45.833 0.00 0.00 44.66 3.16
3803 4056 4.518970 TCAACAAGAGTAATGGGCACTTTC 59.481 41.667 0.00 0.00 0.00 2.62
3808 4061 0.808755 GTAATGGGCACTTTCGGGTG 59.191 55.000 0.00 0.00 39.91 4.61
4298 4689 7.520119 GTCATTACTGATCATGACGTTTGTA 57.480 36.000 10.55 0.00 39.88 2.41
4299 4690 7.613146 GTCATTACTGATCATGACGTTTGTAG 58.387 38.462 10.55 0.00 39.88 2.74
4300 4691 7.488150 GTCATTACTGATCATGACGTTTGTAGA 59.512 37.037 10.55 0.00 39.88 2.59
4301 4692 8.197439 TCATTACTGATCATGACGTTTGTAGAT 58.803 33.333 0.00 0.00 0.00 1.98
4304 4695 9.863845 TTACTGATCATGACGTTTGTAGATTTA 57.136 29.630 0.00 0.00 0.00 1.40
4306 4697 9.383519 ACTGATCATGACGTTTGTAGATTTAAT 57.616 29.630 0.00 0.00 0.00 1.40
4365 4757 9.129209 GTTTGAATGCTTTAAGAATACAACCTC 57.871 33.333 0.00 0.00 0.00 3.85
4381 4773 4.398044 ACAACCTCGAGTCAAACATTGTTT 59.602 37.500 12.31 8.97 0.00 2.83
4382 4774 5.105917 ACAACCTCGAGTCAAACATTGTTTT 60.106 36.000 12.02 0.00 0.00 2.43
4383 4775 6.094325 ACAACCTCGAGTCAAACATTGTTTTA 59.906 34.615 12.02 2.03 0.00 1.52
4384 4776 6.300354 ACCTCGAGTCAAACATTGTTTTAG 57.700 37.500 12.02 2.97 0.00 1.85
4573 4965 5.639931 AGCCTTCTGTTAGAATCGTTTCTTC 59.360 40.000 13.65 8.56 42.29 2.87
4792 5233 5.105877 CCTCGAATGAGTCAGGTAACTTGTA 60.106 44.000 0.00 0.00 42.83 2.41
5031 5472 3.790123 GCTTTTTCGGATCATACAGCAGC 60.790 47.826 0.00 0.00 0.00 5.25
5133 5574 2.695055 CAATACAGTGCGCCGACG 59.305 61.111 4.18 0.00 44.07 5.12
5567 6382 4.944962 TTGATGCGTCTCTTTTACCATG 57.055 40.909 7.58 0.00 0.00 3.66
5569 6384 1.075542 TGCGTCTCTTTTACCATGCG 58.924 50.000 0.00 0.00 0.00 4.73
5570 6385 0.247695 GCGTCTCTTTTACCATGCGC 60.248 55.000 0.00 0.00 36.97 6.09
5572 6387 0.373716 GTCTCTTTTACCATGCGCGG 59.626 55.000 8.83 0.14 0.00 6.46
5594 6411 3.005791 GCAACTTACATCATTATGGGGGC 59.994 47.826 0.00 0.00 37.43 5.80
5596 6413 5.630121 CAACTTACATCATTATGGGGGCTA 58.370 41.667 0.00 0.00 37.43 3.93
5603 6420 7.289326 ACATCATTATGGGGGCTATCTTATT 57.711 36.000 0.00 0.00 37.43 1.40
5604 6421 7.349598 ACATCATTATGGGGGCTATCTTATTC 58.650 38.462 0.00 0.00 37.43 1.75
5605 6422 7.185304 ACATCATTATGGGGGCTATCTTATTCT 59.815 37.037 0.00 0.00 37.43 2.40
5606 6423 7.588866 TCATTATGGGGGCTATCTTATTCTT 57.411 36.000 0.00 0.00 0.00 2.52
5607 6424 8.694171 TCATTATGGGGGCTATCTTATTCTTA 57.306 34.615 0.00 0.00 0.00 2.10
5608 6425 9.296463 TCATTATGGGGGCTATCTTATTCTTAT 57.704 33.333 0.00 0.00 0.00 1.73
5609 6426 9.566432 CATTATGGGGGCTATCTTATTCTTATC 57.434 37.037 0.00 0.00 0.00 1.75
5610 6427 8.933522 TTATGGGGGCTATCTTATTCTTATCT 57.066 34.615 0.00 0.00 0.00 1.98
5611 6428 7.837359 ATGGGGGCTATCTTATTCTTATCTT 57.163 36.000 0.00 0.00 0.00 2.40
5612 6429 8.933522 ATGGGGGCTATCTTATTCTTATCTTA 57.066 34.615 0.00 0.00 0.00 2.10
5679 6496 3.132646 TGAGTTGTCTTGCAAGCCAAATT 59.867 39.130 23.24 14.94 37.83 1.82
5716 6533 0.669318 GAAGCACGGAACATGGACGA 60.669 55.000 11.92 0.00 0.00 4.20
5717 6534 0.949105 AAGCACGGAACATGGACGAC 60.949 55.000 11.92 4.86 0.00 4.34
5744 6561 1.152419 TCACGGGAGGAGGTTGTCA 60.152 57.895 0.00 0.00 0.00 3.58
5771 6588 2.929301 TCTTTCCAGTTACCCAGGGAT 58.071 47.619 14.54 0.00 0.00 3.85
5774 6591 1.227383 CCAGTTACCCAGGGATGGC 59.773 63.158 14.54 0.00 0.00 4.40
5796 6613 4.131088 GACGCGTGACCCTCCTCC 62.131 72.222 20.70 0.00 0.00 4.30
5807 6624 2.452114 CTCCTCCAGGTCCCAGGT 59.548 66.667 0.00 0.00 36.34 4.00
5822 6639 1.251251 CAGGTTTGGAAGGAAGCCAG 58.749 55.000 0.00 0.00 36.64 4.85
5828 6645 2.694760 GGAAGGAAGCCAGCGCAAG 61.695 63.158 11.47 0.00 37.52 4.01
5843 6660 3.209097 AAGGCAACGCAACGCAGT 61.209 55.556 0.00 0.00 45.84 4.40
5844 6661 3.468266 AAGGCAACGCAACGCAGTG 62.468 57.895 0.00 0.00 42.52 3.66
5846 6663 4.903355 GCAACGCAACGCAGTGCA 62.903 61.111 16.83 0.00 45.00 4.57
5847 6664 2.723271 CAACGCAACGCAGTGCAG 60.723 61.111 16.83 10.53 45.00 4.41
5908 6726 5.712152 AAGGTGTCAAGATTGGAAATGTC 57.288 39.130 0.00 0.00 0.00 3.06
5966 6784 2.915659 TGGCTCCCTCGTCGTGTT 60.916 61.111 0.00 0.00 0.00 3.32
5967 6785 2.126031 GGCTCCCTCGTCGTGTTC 60.126 66.667 0.00 0.00 0.00 3.18
6023 6841 1.079127 CTGACGGTTTGCTCGGGAT 60.079 57.895 0.00 0.00 0.00 3.85
6061 6883 0.179034 GGCCTCACTGTCATCATCCC 60.179 60.000 0.00 0.00 0.00 3.85
6154 6976 8.101419 ACTCCAAGTCACCTATAACCTAAAAAG 58.899 37.037 0.00 0.00 0.00 2.27
6155 6977 8.209802 TCCAAGTCACCTATAACCTAAAAAGA 57.790 34.615 0.00 0.00 0.00 2.52
6184 7006 3.403322 AGGGTTATAAGGGCATCTCCAA 58.597 45.455 0.00 0.00 36.21 3.53
6187 7009 3.139077 GTTATAAGGGCATCTCCAACGG 58.861 50.000 0.00 0.00 36.21 4.44
6191 7013 2.746277 GGCATCTCCAACGGCGTT 60.746 61.111 21.19 21.19 34.01 4.84
6193 7015 1.741770 GCATCTCCAACGGCGTTCT 60.742 57.895 24.21 0.00 0.00 3.01
6209 7031 1.019278 TTCTGCAAATCGGGCTCGTC 61.019 55.000 5.57 0.00 37.69 4.20
6239 7062 0.317103 CGACGAGAATACAGGAGCCG 60.317 60.000 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.739462 TGCACAGTGTAGTATGGCGC 60.739 55.000 0.00 0.00 0.00 6.53
1 2 1.393539 GTTGCACAGTGTAGTATGGCG 59.606 52.381 1.61 0.00 0.00 5.69
2 3 1.393539 CGTTGCACAGTGTAGTATGGC 59.606 52.381 1.61 0.00 0.00 4.40
3 4 1.393539 GCGTTGCACAGTGTAGTATGG 59.606 52.381 1.61 0.00 0.00 2.74
4 5 1.393539 GGCGTTGCACAGTGTAGTATG 59.606 52.381 1.61 0.00 0.00 2.39
5 6 1.275291 AGGCGTTGCACAGTGTAGTAT 59.725 47.619 1.61 0.00 0.00 2.12
6 7 0.677288 AGGCGTTGCACAGTGTAGTA 59.323 50.000 1.61 0.00 0.00 1.82
7 8 0.600255 GAGGCGTTGCACAGTGTAGT 60.600 55.000 1.61 0.00 0.00 2.73
8 9 1.617755 CGAGGCGTTGCACAGTGTAG 61.618 60.000 1.61 0.00 0.00 2.74
9 10 1.663388 CGAGGCGTTGCACAGTGTA 60.663 57.895 1.61 0.00 0.00 2.90
10 11 2.967076 CGAGGCGTTGCACAGTGT 60.967 61.111 1.61 0.00 0.00 3.55
11 12 4.374702 GCGAGGCGTTGCACAGTG 62.375 66.667 13.75 0.00 32.59 3.66
12 13 4.908687 TGCGAGGCGTTGCACAGT 62.909 61.111 17.22 0.00 38.24 3.55
13 14 4.081030 CTGCGAGGCGTTGCACAG 62.081 66.667 17.22 5.41 38.24 3.66
14 15 2.499756 TATCTGCGAGGCGTTGCACA 62.500 55.000 17.22 8.16 38.24 4.57
15 16 1.756375 CTATCTGCGAGGCGTTGCAC 61.756 60.000 17.22 0.00 38.24 4.57
16 17 1.519234 CTATCTGCGAGGCGTTGCA 60.519 57.895 19.70 19.70 41.13 4.08
17 18 2.240500 CCTATCTGCGAGGCGTTGC 61.241 63.158 11.80 11.80 0.00 4.17
18 19 4.018609 CCTATCTGCGAGGCGTTG 57.981 61.111 0.00 0.00 0.00 4.10
27 28 3.923614 CGTGTAGCGCCTATCTGC 58.076 61.111 2.29 0.00 0.00 4.26
38 39 2.507102 CGCTGTCCAGGCGTGTAG 60.507 66.667 5.57 2.33 46.37 2.74
44 45 4.030452 GTGCAACGCTGTCCAGGC 62.030 66.667 0.00 0.00 0.00 4.85
45 46 3.357079 GGTGCAACGCTGTCCAGG 61.357 66.667 0.00 0.00 38.12 4.45
54 55 3.357079 GCAGTCTGGGGTGCAACG 61.357 66.667 1.14 0.00 39.62 4.10
55 56 2.124507 TAGGCAGTCTGGGGTGCAAC 62.125 60.000 1.14 0.00 41.75 4.17
56 57 1.422977 TTAGGCAGTCTGGGGTGCAA 61.423 55.000 1.14 0.00 41.75 4.08
57 58 1.422977 TTTAGGCAGTCTGGGGTGCA 61.423 55.000 1.14 0.00 41.75 4.57
58 59 0.251165 TTTTAGGCAGTCTGGGGTGC 60.251 55.000 1.14 0.00 39.08 5.01
59 60 2.514458 ATTTTAGGCAGTCTGGGGTG 57.486 50.000 1.14 0.00 0.00 4.61
60 61 3.165071 CAAATTTTAGGCAGTCTGGGGT 58.835 45.455 1.14 0.00 0.00 4.95
61 62 2.094026 GCAAATTTTAGGCAGTCTGGGG 60.094 50.000 1.14 0.00 0.00 4.96
62 63 2.827921 AGCAAATTTTAGGCAGTCTGGG 59.172 45.455 1.14 0.00 0.00 4.45
63 64 5.183904 ACTTAGCAAATTTTAGGCAGTCTGG 59.816 40.000 1.14 0.00 0.00 3.86
64 65 6.072508 TGACTTAGCAAATTTTAGGCAGTCTG 60.073 38.462 14.89 0.00 33.92 3.51
65 66 6.003950 TGACTTAGCAAATTTTAGGCAGTCT 58.996 36.000 14.89 0.00 33.92 3.24
66 67 6.254281 TGACTTAGCAAATTTTAGGCAGTC 57.746 37.500 10.27 10.27 33.59 3.51
67 68 6.840780 ATGACTTAGCAAATTTTAGGCAGT 57.159 33.333 2.29 0.00 0.00 4.40
68 69 7.062605 CACAATGACTTAGCAAATTTTAGGCAG 59.937 37.037 2.29 0.00 0.00 4.85
69 70 6.867816 CACAATGACTTAGCAAATTTTAGGCA 59.132 34.615 2.29 0.68 0.00 4.75
70 71 6.183360 GCACAATGACTTAGCAAATTTTAGGC 60.183 38.462 0.00 0.00 0.00 3.93
71 72 6.867816 TGCACAATGACTTAGCAAATTTTAGG 59.132 34.615 0.00 0.00 31.42 2.69
72 73 7.809331 TCTGCACAATGACTTAGCAAATTTTAG 59.191 33.333 0.00 0.00 34.45 1.85
73 74 7.656412 TCTGCACAATGACTTAGCAAATTTTA 58.344 30.769 0.00 0.00 34.45 1.52
74 75 6.514947 TCTGCACAATGACTTAGCAAATTTT 58.485 32.000 0.00 0.00 34.45 1.82
75 76 6.088016 TCTGCACAATGACTTAGCAAATTT 57.912 33.333 0.00 0.00 34.45 1.82
76 77 5.706916 CTCTGCACAATGACTTAGCAAATT 58.293 37.500 0.00 0.00 34.45 1.82
77 78 4.380233 GCTCTGCACAATGACTTAGCAAAT 60.380 41.667 0.00 0.00 34.45 2.32
78 79 3.058016 GCTCTGCACAATGACTTAGCAAA 60.058 43.478 0.00 0.00 34.45 3.68
79 80 2.485426 GCTCTGCACAATGACTTAGCAA 59.515 45.455 0.00 0.00 34.45 3.91
80 81 2.079158 GCTCTGCACAATGACTTAGCA 58.921 47.619 0.00 0.00 0.00 3.49
81 82 1.399791 GGCTCTGCACAATGACTTAGC 59.600 52.381 0.00 0.00 0.00 3.09
82 83 2.983229 AGGCTCTGCACAATGACTTAG 58.017 47.619 0.00 0.00 0.00 2.18
83 84 4.222810 TCTTAGGCTCTGCACAATGACTTA 59.777 41.667 0.00 0.00 0.00 2.24
84 85 3.008375 TCTTAGGCTCTGCACAATGACTT 59.992 43.478 0.00 0.00 0.00 3.01
85 86 2.568956 TCTTAGGCTCTGCACAATGACT 59.431 45.455 0.00 0.00 0.00 3.41
86 87 2.935201 CTCTTAGGCTCTGCACAATGAC 59.065 50.000 0.00 0.00 0.00 3.06
87 88 2.679059 GCTCTTAGGCTCTGCACAATGA 60.679 50.000 0.00 0.00 0.00 2.57
88 89 1.669779 GCTCTTAGGCTCTGCACAATG 59.330 52.381 0.00 0.00 0.00 2.82
89 90 1.558756 AGCTCTTAGGCTCTGCACAAT 59.441 47.619 0.00 0.00 38.24 2.71
90 91 0.979665 AGCTCTTAGGCTCTGCACAA 59.020 50.000 0.00 0.00 38.24 3.33
91 92 1.753649 CTAGCTCTTAGGCTCTGCACA 59.246 52.381 0.00 0.00 42.97 4.57
92 93 1.068434 CCTAGCTCTTAGGCTCTGCAC 59.932 57.143 0.00 0.00 42.50 4.57
93 94 1.407936 CCTAGCTCTTAGGCTCTGCA 58.592 55.000 0.00 0.00 42.50 4.41
107 108 4.475312 ACTATACAGTGCAGCGCCTAGC 62.475 54.545 2.29 7.01 38.99 3.42
108 109 1.338337 ACTATACAGTGCAGCGCCTAG 59.662 52.381 2.29 0.00 32.25 3.02
109 110 1.067060 CACTATACAGTGCAGCGCCTA 59.933 52.381 2.29 0.00 45.44 3.93
110 111 0.179100 CACTATACAGTGCAGCGCCT 60.179 55.000 2.29 0.00 45.44 5.52
111 112 2.301505 CACTATACAGTGCAGCGCC 58.698 57.895 2.29 0.00 45.44 6.53
119 120 1.105167 TAGGCGCCGCACTATACAGT 61.105 55.000 23.20 0.33 34.42 3.55
120 121 0.387367 CTAGGCGCCGCACTATACAG 60.387 60.000 23.20 4.35 0.00 2.74
121 122 1.658114 CTAGGCGCCGCACTATACA 59.342 57.895 23.20 0.00 0.00 2.29
122 123 1.733399 GCTAGGCGCCGCACTATAC 60.733 63.158 23.20 1.93 0.00 1.47
123 124 1.863662 GAGCTAGGCGCCGCACTATA 61.864 60.000 25.28 9.62 40.39 1.31
124 125 3.214250 GAGCTAGGCGCCGCACTAT 62.214 63.158 25.28 8.92 40.39 2.12
125 126 3.900892 GAGCTAGGCGCCGCACTA 61.901 66.667 25.28 10.70 40.39 2.74
129 130 4.940593 CTGAGAGCTAGGCGCCGC 62.941 72.222 23.20 20.04 40.39 6.53
130 131 4.277593 CCTGAGAGCTAGGCGCCG 62.278 72.222 23.20 9.22 40.39 6.46
139 140 2.348605 CTAGTCCAGCGCCTGAGAGC 62.349 65.000 2.29 0.00 39.42 4.09
140 141 1.034838 ACTAGTCCAGCGCCTGAGAG 61.035 60.000 2.29 4.01 32.44 3.20
141 142 1.000771 ACTAGTCCAGCGCCTGAGA 60.001 57.895 2.29 0.00 32.44 3.27
142 143 1.140589 CACTAGTCCAGCGCCTGAG 59.859 63.158 2.29 0.00 32.44 3.35
143 144 2.351244 CCACTAGTCCAGCGCCTGA 61.351 63.158 2.29 0.00 32.44 3.86
144 145 2.172483 AACCACTAGTCCAGCGCCTG 62.172 60.000 2.29 1.18 0.00 4.85
145 146 1.913762 AACCACTAGTCCAGCGCCT 60.914 57.895 2.29 0.00 0.00 5.52
146 147 1.741770 CAACCACTAGTCCAGCGCC 60.742 63.158 2.29 0.00 0.00 6.53
147 148 2.391389 GCAACCACTAGTCCAGCGC 61.391 63.158 0.00 0.00 0.00 5.92
148 149 1.005037 TGCAACCACTAGTCCAGCG 60.005 57.895 0.00 0.00 0.00 5.18
149 150 2.544726 GTGCAACCACTAGTCCAGC 58.455 57.895 0.00 0.00 38.93 4.85
158 159 5.708948 TGCTTCATTTTATAGTGCAACCAC 58.291 37.500 0.00 0.00 42.39 4.16
159 160 5.973899 TGCTTCATTTTATAGTGCAACCA 57.026 34.783 0.00 0.00 37.80 3.67
162 163 6.015519 AGTGGTTGCTTCATTTTATAGTGCAA 60.016 34.615 0.00 0.00 36.74 4.08
163 164 5.476599 AGTGGTTGCTTCATTTTATAGTGCA 59.523 36.000 0.00 0.00 0.00 4.57
164 165 5.954335 AGTGGTTGCTTCATTTTATAGTGC 58.046 37.500 0.00 0.00 0.00 4.40
165 166 8.177663 CACTAGTGGTTGCTTCATTTTATAGTG 58.822 37.037 15.49 0.00 32.15 2.74
166 167 7.148239 GCACTAGTGGTTGCTTCATTTTATAGT 60.148 37.037 23.95 0.00 0.00 2.12
167 168 7.148255 TGCACTAGTGGTTGCTTCATTTTATAG 60.148 37.037 23.95 0.00 0.00 1.31
168 169 6.657117 TGCACTAGTGGTTGCTTCATTTTATA 59.343 34.615 23.95 0.00 0.00 0.98
169 170 5.476599 TGCACTAGTGGTTGCTTCATTTTAT 59.523 36.000 23.95 0.00 0.00 1.40
170 171 4.824537 TGCACTAGTGGTTGCTTCATTTTA 59.175 37.500 23.95 0.00 0.00 1.52
171 172 3.636300 TGCACTAGTGGTTGCTTCATTTT 59.364 39.130 23.95 0.00 0.00 1.82
172 173 3.221771 TGCACTAGTGGTTGCTTCATTT 58.778 40.909 23.95 0.00 0.00 2.32
173 174 2.862541 TGCACTAGTGGTTGCTTCATT 58.137 42.857 23.95 0.00 0.00 2.57
174 175 2.566833 TGCACTAGTGGTTGCTTCAT 57.433 45.000 23.95 0.00 0.00 2.57
175 176 2.340210 TTGCACTAGTGGTTGCTTCA 57.660 45.000 23.95 8.83 0.00 3.02
176 177 2.669391 GCATTGCACTAGTGGTTGCTTC 60.669 50.000 23.95 6.25 0.00 3.86
177 178 1.270550 GCATTGCACTAGTGGTTGCTT 59.729 47.619 23.95 0.00 0.00 3.91
178 179 0.883833 GCATTGCACTAGTGGTTGCT 59.116 50.000 23.95 0.00 0.00 3.91
179 180 0.109132 GGCATTGCACTAGTGGTTGC 60.109 55.000 23.95 10.41 0.00 4.17
180 181 1.538047 AGGCATTGCACTAGTGGTTG 58.462 50.000 23.95 0.00 0.00 3.77
181 182 2.571653 TCTAGGCATTGCACTAGTGGTT 59.428 45.455 23.95 3.73 38.24 3.67
182 183 2.187958 TCTAGGCATTGCACTAGTGGT 58.812 47.619 23.95 0.00 38.24 4.16
183 184 2.988010 TCTAGGCATTGCACTAGTGG 57.012 50.000 23.95 8.63 38.24 4.00
184 185 2.611292 GCTTCTAGGCATTGCACTAGTG 59.389 50.000 18.93 18.93 38.24 2.74
185 186 2.503356 AGCTTCTAGGCATTGCACTAGT 59.497 45.455 22.55 0.00 38.24 2.57
186 187 3.191078 AGCTTCTAGGCATTGCACTAG 57.809 47.619 19.78 19.78 38.38 2.57
187 188 3.070159 CCTAGCTTCTAGGCATTGCACTA 59.930 47.826 11.39 8.54 34.17 2.74
188 189 2.158842 CCTAGCTTCTAGGCATTGCACT 60.159 50.000 11.39 7.82 34.17 4.40
189 190 2.216898 CCTAGCTTCTAGGCATTGCAC 58.783 52.381 11.39 0.00 34.17 4.57
190 191 2.627515 CCTAGCTTCTAGGCATTGCA 57.372 50.000 11.39 0.00 34.17 4.08
199 200 9.787232 ACTATACAGTGTAGCGCCTAGCTTCTA 62.787 44.444 2.29 0.00 43.79 2.10
201 202 6.996034 ACTATACAGTGTAGCGCCTAGCTTC 61.996 48.000 2.29 0.00 43.79 3.86
202 203 5.228145 ACTATACAGTGTAGCGCCTAGCTT 61.228 45.833 2.29 0.00 43.79 3.74
203 204 3.748027 ACTATACAGTGTAGCGCCTAGCT 60.748 47.826 2.29 0.00 46.39 3.32
204 205 2.553172 ACTATACAGTGTAGCGCCTAGC 59.447 50.000 2.29 0.00 38.99 3.42
205 206 4.148563 CACTATACAGTGTAGCGCCTAG 57.851 50.000 2.29 7.59 46.03 3.02
216 217 1.681793 CTAGGCGCCACACTATACAGT 59.318 52.381 31.54 5.27 34.42 3.55
217 218 1.603172 GCTAGGCGCCACACTATACAG 60.603 57.143 31.54 11.37 0.00 2.74
218 219 0.387929 GCTAGGCGCCACACTATACA 59.612 55.000 31.54 0.33 0.00 2.29
219 220 0.674534 AGCTAGGCGCCACACTATAC 59.325 55.000 31.54 8.64 40.39 1.47
220 221 0.959553 GAGCTAGGCGCCACACTATA 59.040 55.000 31.54 10.17 40.39 1.31
221 222 0.757188 AGAGCTAGGCGCCACACTAT 60.757 55.000 31.54 16.52 40.39 2.12
222 223 1.379977 AGAGCTAGGCGCCACACTA 60.380 57.895 31.54 11.42 40.39 2.74
223 224 2.681778 AGAGCTAGGCGCCACACT 60.682 61.111 31.54 21.99 40.39 3.55
224 225 2.202810 GAGAGCTAGGCGCCACAC 60.203 66.667 31.54 17.11 40.39 3.82
225 226 2.679996 TGAGAGCTAGGCGCCACA 60.680 61.111 31.54 15.42 40.39 4.17
226 227 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
227 228 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
237 238 3.117171 GTGTGCAGCGCCTGAGAG 61.117 66.667 2.29 0.00 32.44 3.20
238 239 3.619767 AGTGTGCAGCGCCTGAGA 61.620 61.111 2.29 0.00 32.44 3.27
239 240 3.420606 CAGTGTGCAGCGCCTGAG 61.421 66.667 15.59 0.00 32.44 3.35
240 241 3.927548 TCAGTGTGCAGCGCCTGA 61.928 61.111 18.04 18.04 32.44 3.86
241 242 3.720193 GTCAGTGTGCAGCGCCTG 61.720 66.667 2.29 14.85 34.12 4.85
242 243 2.099652 TAAGTCAGTGTGCAGCGCCT 62.100 55.000 2.29 0.00 0.00 5.52
243 244 1.630244 CTAAGTCAGTGTGCAGCGCC 61.630 60.000 2.29 0.00 0.00 6.53
244 245 0.946221 ACTAAGTCAGTGTGCAGCGC 60.946 55.000 0.00 0.00 35.62 5.92
245 246 2.347697 TACTAAGTCAGTGTGCAGCG 57.652 50.000 0.00 0.00 38.24 5.18
246 247 5.613358 AAATTACTAAGTCAGTGTGCAGC 57.387 39.130 0.00 0.00 38.24 5.25
247 248 6.299604 CGAAAATTACTAAGTCAGTGTGCAG 58.700 40.000 0.00 0.00 38.24 4.41
248 249 5.178623 CCGAAAATTACTAAGTCAGTGTGCA 59.821 40.000 0.00 0.00 38.24 4.57
249 250 5.407387 TCCGAAAATTACTAAGTCAGTGTGC 59.593 40.000 0.00 0.00 38.24 4.57
250 251 7.330946 TGATCCGAAAATTACTAAGTCAGTGTG 59.669 37.037 0.00 0.00 38.24 3.82
251 252 7.331193 GTGATCCGAAAATTACTAAGTCAGTGT 59.669 37.037 0.00 0.00 38.24 3.55
252 253 7.330946 TGTGATCCGAAAATTACTAAGTCAGTG 59.669 37.037 0.00 0.00 38.24 3.66
253 254 7.331193 GTGTGATCCGAAAATTACTAAGTCAGT 59.669 37.037 0.00 0.00 41.62 3.41
254 255 7.462856 CGTGTGATCCGAAAATTACTAAGTCAG 60.463 40.741 0.00 0.00 0.00 3.51
255 256 6.309494 CGTGTGATCCGAAAATTACTAAGTCA 59.691 38.462 0.00 0.00 0.00 3.41
256 257 6.237755 CCGTGTGATCCGAAAATTACTAAGTC 60.238 42.308 0.00 0.00 0.00 3.01
257 258 5.579511 CCGTGTGATCCGAAAATTACTAAGT 59.420 40.000 0.00 0.00 0.00 2.24
258 259 5.808540 TCCGTGTGATCCGAAAATTACTAAG 59.191 40.000 0.00 0.00 0.00 2.18
259 260 5.722263 TCCGTGTGATCCGAAAATTACTAA 58.278 37.500 0.00 0.00 0.00 2.24
260 261 5.327616 TCCGTGTGATCCGAAAATTACTA 57.672 39.130 0.00 0.00 0.00 1.82
261 262 4.196626 TCCGTGTGATCCGAAAATTACT 57.803 40.909 0.00 0.00 0.00 2.24
262 263 4.785341 GCATCCGTGTGATCCGAAAATTAC 60.785 45.833 0.00 0.00 0.00 1.89
263 264 3.311322 GCATCCGTGTGATCCGAAAATTA 59.689 43.478 0.00 0.00 0.00 1.40
264 265 2.097466 GCATCCGTGTGATCCGAAAATT 59.903 45.455 0.00 0.00 0.00 1.82
265 266 1.670811 GCATCCGTGTGATCCGAAAAT 59.329 47.619 0.00 0.00 0.00 1.82
266 267 1.083489 GCATCCGTGTGATCCGAAAA 58.917 50.000 0.00 0.00 0.00 2.29
267 268 1.081556 CGCATCCGTGTGATCCGAAA 61.082 55.000 0.00 0.00 36.74 3.46
268 269 1.518352 CGCATCCGTGTGATCCGAA 60.518 57.895 0.00 0.00 36.74 4.30
269 270 2.104132 CGCATCCGTGTGATCCGA 59.896 61.111 0.00 0.00 36.74 4.55
270 271 2.104132 TCGCATCCGTGTGATCCG 59.896 61.111 0.00 0.00 39.80 4.18
271 272 1.141881 AGTCGCATCCGTGTGATCC 59.858 57.895 0.00 0.00 45.74 3.36
272 273 1.148157 CCAGTCGCATCCGTGTGATC 61.148 60.000 0.00 0.00 45.74 2.92
273 274 1.153568 CCAGTCGCATCCGTGTGAT 60.154 57.895 0.00 0.00 45.74 3.06
274 275 2.261361 CCAGTCGCATCCGTGTGA 59.739 61.111 0.00 0.00 42.28 3.58
275 276 2.048222 ACCAGTCGCATCCGTGTG 60.048 61.111 0.00 0.00 37.19 3.82
276 277 2.261671 GACCAGTCGCATCCGTGT 59.738 61.111 0.00 0.00 35.54 4.49
277 278 1.807165 CTGACCAGTCGCATCCGTG 60.807 63.158 0.00 0.00 35.54 4.94
278 279 1.977009 TCTGACCAGTCGCATCCGT 60.977 57.895 0.00 0.00 35.54 4.69
279 280 1.517257 GTCTGACCAGTCGCATCCG 60.517 63.158 0.00 0.00 0.00 4.18
280 281 1.517257 CGTCTGACCAGTCGCATCC 60.517 63.158 1.55 0.00 33.80 3.51
281 282 1.073216 CACGTCTGACCAGTCGCATC 61.073 60.000 14.53 0.00 42.19 3.91
282 283 1.080501 CACGTCTGACCAGTCGCAT 60.081 57.895 14.53 0.00 42.19 4.73
283 284 1.167781 TACACGTCTGACCAGTCGCA 61.168 55.000 14.53 0.89 42.19 5.10
284 285 0.454620 CTACACGTCTGACCAGTCGC 60.455 60.000 14.53 0.00 42.19 5.19
285 286 0.454620 GCTACACGTCTGACCAGTCG 60.455 60.000 13.38 13.38 43.60 4.18
286 287 0.454620 CGCTACACGTCTGACCAGTC 60.455 60.000 1.55 0.00 36.87 3.51
287 288 1.579932 CGCTACACGTCTGACCAGT 59.420 57.895 1.55 3.78 36.87 4.00
288 289 1.801913 GCGCTACACGTCTGACCAG 60.802 63.158 0.00 0.00 46.11 4.00
289 290 2.257371 GCGCTACACGTCTGACCA 59.743 61.111 0.00 0.00 46.11 4.02
290 291 2.506438 GGCGCTACACGTCTGACC 60.506 66.667 7.64 0.00 45.03 4.02
296 297 0.100682 CACAGATAGGCGCTACACGT 59.899 55.000 7.64 0.00 46.11 4.49
298 299 1.269309 CCTCACAGATAGGCGCTACAC 60.269 57.143 7.64 0.00 0.00 2.90
299 300 1.032794 CCTCACAGATAGGCGCTACA 58.967 55.000 7.64 0.00 0.00 2.74
300 301 3.875838 CCTCACAGATAGGCGCTAC 57.124 57.895 7.64 0.00 0.00 3.58
306 307 0.108186 TGCAACGCCTCACAGATAGG 60.108 55.000 0.00 0.00 37.17 2.57
307 308 1.002366 GTGCAACGCCTCACAGATAG 58.998 55.000 0.00 0.00 33.63 2.08
308 309 0.320050 TGTGCAACGCCTCACAGATA 59.680 50.000 0.00 0.00 42.39 1.98
309 310 1.071299 TGTGCAACGCCTCACAGAT 59.929 52.632 0.00 0.00 42.39 2.90
310 311 2.503546 TGTGCAACGCCTCACAGA 59.496 55.556 0.00 0.00 42.39 3.41
312 313 2.179547 CACTGTGCAACGCCTCACA 61.180 57.895 0.00 4.54 42.39 3.58
313 314 0.878523 TACACTGTGCAACGCCTCAC 60.879 55.000 7.90 0.00 42.39 3.51
314 315 0.599991 CTACACTGTGCAACGCCTCA 60.600 55.000 7.90 0.00 42.39 3.86
315 316 0.600255 ACTACACTGTGCAACGCCTC 60.600 55.000 7.90 0.00 42.39 4.70
316 317 0.880278 CACTACACTGTGCAACGCCT 60.880 55.000 7.90 0.00 42.39 5.52
317 318 1.157870 ACACTACACTGTGCAACGCC 61.158 55.000 7.90 0.00 42.39 5.68
318 319 0.042188 CACACTACACTGTGCAACGC 60.042 55.000 7.90 0.00 42.39 4.84
319 320 0.581529 CCACACTACACTGTGCAACG 59.418 55.000 7.90 0.00 42.39 4.10
320 321 0.307760 GCCACACTACACTGTGCAAC 59.692 55.000 7.90 0.00 40.33 4.17
321 322 1.157257 CGCCACACTACACTGTGCAA 61.157 55.000 7.90 0.00 40.33 4.08
322 323 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
323 324 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
324 325 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
325 326 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
326 327 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
327 328 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
328 329 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
329 330 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
330 331 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
331 332 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
332 333 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
333 334 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
341 342 4.351938 TGACGCCCGACACGAAGG 62.352 66.667 0.00 0.00 0.00 3.46
342 343 3.103911 GTGACGCCCGACACGAAG 61.104 66.667 7.43 0.00 32.16 3.79
343 344 1.864725 TATGTGACGCCCGACACGAA 61.865 55.000 15.80 6.17 42.06 3.85
344 345 1.864725 TTATGTGACGCCCGACACGA 61.865 55.000 15.80 6.29 42.06 4.35
345 346 1.009903 TTTATGTGACGCCCGACACG 61.010 55.000 15.80 0.00 42.06 4.49
346 347 1.149987 TTTTATGTGACGCCCGACAC 58.850 50.000 14.47 14.47 40.22 3.67
347 348 1.801771 CTTTTTATGTGACGCCCGACA 59.198 47.619 0.00 0.00 0.00 4.35
348 349 1.129811 CCTTTTTATGTGACGCCCGAC 59.870 52.381 0.00 0.00 0.00 4.79
349 350 1.270947 ACCTTTTTATGTGACGCCCGA 60.271 47.619 0.00 0.00 0.00 5.14
350 351 1.135803 CACCTTTTTATGTGACGCCCG 60.136 52.381 0.00 0.00 34.37 6.13
351 352 2.156098 TCACCTTTTTATGTGACGCCC 58.844 47.619 0.00 0.00 36.62 6.13
352 353 2.414161 GCTCACCTTTTTATGTGACGCC 60.414 50.000 0.00 0.00 36.62 5.68
353 354 2.414161 GGCTCACCTTTTTATGTGACGC 60.414 50.000 0.00 0.00 36.62 5.19
354 355 2.159707 CGGCTCACCTTTTTATGTGACG 60.160 50.000 0.00 0.00 36.62 4.35
355 356 2.414161 GCGGCTCACCTTTTTATGTGAC 60.414 50.000 0.00 0.00 36.62 3.67
356 357 1.810151 GCGGCTCACCTTTTTATGTGA 59.190 47.619 0.00 0.00 39.08 3.58
357 358 1.465689 CGCGGCTCACCTTTTTATGTG 60.466 52.381 0.00 0.00 0.00 3.21
358 359 0.802494 CGCGGCTCACCTTTTTATGT 59.198 50.000 0.00 0.00 0.00 2.29
359 360 0.802494 ACGCGGCTCACCTTTTTATG 59.198 50.000 12.47 0.00 0.00 1.90
360 361 0.802494 CACGCGGCTCACCTTTTTAT 59.198 50.000 12.47 0.00 0.00 1.40
361 362 0.249953 TCACGCGGCTCACCTTTTTA 60.250 50.000 12.47 0.00 0.00 1.52
362 363 1.098712 TTCACGCGGCTCACCTTTTT 61.099 50.000 12.47 0.00 0.00 1.94
363 364 1.098712 TTTCACGCGGCTCACCTTTT 61.099 50.000 12.47 0.00 0.00 2.27
364 365 0.889186 ATTTCACGCGGCTCACCTTT 60.889 50.000 12.47 0.00 0.00 3.11
365 366 0.036765 TATTTCACGCGGCTCACCTT 60.037 50.000 12.47 0.00 0.00 3.50
366 367 0.036765 TTATTTCACGCGGCTCACCT 60.037 50.000 12.47 0.00 0.00 4.00
367 368 1.014352 ATTATTTCACGCGGCTCACC 58.986 50.000 12.47 0.00 0.00 4.02
368 369 2.825086 AATTATTTCACGCGGCTCAC 57.175 45.000 12.47 0.00 0.00 3.51
369 370 2.744741 TGAAATTATTTCACGCGGCTCA 59.255 40.909 15.46 0.00 44.21 4.26
370 371 3.398954 TGAAATTATTTCACGCGGCTC 57.601 42.857 15.46 0.00 44.21 4.70
378 379 6.869315 TGAACTGTCCGTGAAATTATTTCA 57.131 33.333 15.46 15.46 46.68 2.69
379 380 8.237267 AGAATGAACTGTCCGTGAAATTATTTC 58.763 33.333 10.47 10.47 40.08 2.17
380 381 8.023128 CAGAATGAACTGTCCGTGAAATTATTT 58.977 33.333 0.00 0.00 39.69 1.40
381 382 7.174946 ACAGAATGAACTGTCCGTGAAATTATT 59.825 33.333 0.00 0.00 46.36 1.40
382 383 6.655003 ACAGAATGAACTGTCCGTGAAATTAT 59.345 34.615 0.00 0.00 46.36 1.28
383 384 5.995282 ACAGAATGAACTGTCCGTGAAATTA 59.005 36.000 0.00 0.00 46.36 1.40
384 385 4.821805 ACAGAATGAACTGTCCGTGAAATT 59.178 37.500 0.00 0.00 46.36 1.82
385 386 4.389374 ACAGAATGAACTGTCCGTGAAAT 58.611 39.130 0.00 0.00 46.36 2.17
386 387 3.804036 ACAGAATGAACTGTCCGTGAAA 58.196 40.909 0.00 0.00 46.36 2.69
387 388 3.469008 ACAGAATGAACTGTCCGTGAA 57.531 42.857 0.00 0.00 46.36 3.18
395 396 8.981724 ATGAAATCAAATCACAGAATGAACTG 57.018 30.769 0.00 0.00 41.93 3.16
396 397 9.635520 GAATGAAATCAAATCACAGAATGAACT 57.364 29.630 0.00 0.00 41.93 3.01
397 398 9.414295 TGAATGAAATCAAATCACAGAATGAAC 57.586 29.630 0.00 0.00 41.93 3.18
402 403 9.246670 ACCTATGAATGAAATCAAATCACAGAA 57.753 29.630 8.56 0.00 31.58 3.02
403 404 8.812513 ACCTATGAATGAAATCAAATCACAGA 57.187 30.769 8.56 0.00 31.58 3.41
404 405 8.680001 TGACCTATGAATGAAATCAAATCACAG 58.320 33.333 4.90 3.68 31.58 3.66
405 406 8.578448 TGACCTATGAATGAAATCAAATCACA 57.422 30.769 4.90 0.00 31.58 3.58
406 407 9.859427 TTTGACCTATGAATGAAATCAAATCAC 57.141 29.630 4.90 0.00 31.51 3.06
412 413 9.859427 GACAAATTTGACCTATGAATGAAATCA 57.141 29.630 24.64 0.00 0.00 2.57
413 414 9.859427 TGACAAATTTGACCTATGAATGAAATC 57.141 29.630 24.64 6.30 0.00 2.17
420 421 8.772705 GCAAAATTGACAAATTTGACCTATGAA 58.227 29.630 25.81 8.70 43.63 2.57
421 422 7.387397 GGCAAAATTGACAAATTTGACCTATGA 59.613 33.333 25.81 0.00 43.63 2.15
422 423 7.388500 AGGCAAAATTGACAAATTTGACCTATG 59.612 33.333 26.28 13.77 43.63 2.23
423 424 7.452562 AGGCAAAATTGACAAATTTGACCTAT 58.547 30.769 26.28 12.79 43.63 2.57
424 425 6.825610 AGGCAAAATTGACAAATTTGACCTA 58.174 32.000 26.28 12.29 43.63 3.08
425 426 5.683681 AGGCAAAATTGACAAATTTGACCT 58.316 33.333 24.61 24.35 43.63 3.85
426 427 6.200808 CAAGGCAAAATTGACAAATTTGACC 58.799 36.000 24.61 23.05 43.63 4.02
427 428 6.200808 CCAAGGCAAAATTGACAAATTTGAC 58.799 36.000 25.81 23.97 43.63 3.18
428 429 5.221009 GCCAAGGCAAAATTGACAAATTTGA 60.221 36.000 25.81 2.69 43.63 2.69
429 430 4.977347 GCCAAGGCAAAATTGACAAATTTG 59.023 37.500 19.89 19.89 43.63 2.32
430 431 4.261114 CGCCAAGGCAAAATTGACAAATTT 60.261 37.500 12.19 0.00 39.18 1.82
431 432 3.250521 CGCCAAGGCAAAATTGACAAATT 59.749 39.130 12.19 0.00 39.18 1.82
432 433 2.807392 CGCCAAGGCAAAATTGACAAAT 59.193 40.909 12.19 0.00 39.18 2.32
433 434 2.208431 CGCCAAGGCAAAATTGACAAA 58.792 42.857 12.19 0.00 39.18 2.83
434 435 1.137872 ACGCCAAGGCAAAATTGACAA 59.862 42.857 12.19 0.00 39.18 3.18
435 436 0.749649 ACGCCAAGGCAAAATTGACA 59.250 45.000 12.19 0.00 39.18 3.58
436 437 1.269517 TGACGCCAAGGCAAAATTGAC 60.270 47.619 12.19 0.00 42.06 3.18
437 438 1.000385 CTGACGCCAAGGCAAAATTGA 60.000 47.619 12.19 0.00 37.47 2.57
438 439 1.421382 CTGACGCCAAGGCAAAATTG 58.579 50.000 12.19 0.00 37.47 2.32
439 440 0.319813 GCTGACGCCAAGGCAAAATT 60.320 50.000 12.19 0.00 37.47 1.82
440 441 1.290009 GCTGACGCCAAGGCAAAAT 59.710 52.632 12.19 0.00 37.47 1.82
441 442 2.727544 GCTGACGCCAAGGCAAAA 59.272 55.556 12.19 0.00 37.47 2.44
442 443 2.997952 TACGCTGACGCCAAGGCAAA 62.998 55.000 12.19 0.00 45.53 3.68
443 444 2.796483 ATACGCTGACGCCAAGGCAA 62.796 55.000 12.19 0.00 45.53 4.52
444 445 2.796483 AATACGCTGACGCCAAGGCA 62.796 55.000 12.19 0.00 45.53 4.75
445 446 1.644786 AAATACGCTGACGCCAAGGC 61.645 55.000 0.00 0.00 45.53 4.35
446 447 0.096976 CAAATACGCTGACGCCAAGG 59.903 55.000 0.00 0.00 45.53 3.61
447 448 0.096976 CCAAATACGCTGACGCCAAG 59.903 55.000 0.00 0.00 45.53 3.61
480 481 1.274447 GTATACTACATGCGGACCCCC 59.726 57.143 0.00 0.00 0.00 5.40
500 511 3.404707 TTTCACGTTACCGCGGCG 61.405 61.111 28.58 23.54 37.70 6.46
527 538 2.105993 ACGTCTTTTCCAGTAAGCCCTT 59.894 45.455 0.00 0.00 0.00 3.95
537 548 1.606224 GCCGGTTAGACGTCTTTTCCA 60.606 52.381 25.44 1.28 0.00 3.53
572 583 1.371267 TATGTATGCCGCGTCGCTC 60.371 57.895 16.36 7.51 0.00 5.03
815 840 0.037160 TGGAGCGGGGGAGTTAAAAC 59.963 55.000 0.00 0.00 0.00 2.43
1098 1123 2.527875 GAGGGGGATGGGATCGCT 60.528 66.667 11.46 0.00 41.49 4.93
1328 1362 3.705934 TTGTTGTGGCCTGGCGTGA 62.706 57.895 13.40 0.00 0.00 4.35
1662 1714 1.129064 GAATTGCAGCCAAATTTGCCG 59.871 47.619 12.92 1.41 39.54 5.69
1896 1948 5.474532 GCCATCATGCAATCATTTAGGAGTA 59.525 40.000 0.00 0.00 0.00 2.59
1897 1949 4.280174 GCCATCATGCAATCATTTAGGAGT 59.720 41.667 0.00 0.00 0.00 3.85
1898 1950 4.279922 TGCCATCATGCAATCATTTAGGAG 59.720 41.667 0.00 0.00 38.56 3.69
1899 1951 4.216708 TGCCATCATGCAATCATTTAGGA 58.783 39.130 0.00 0.00 38.56 2.94
1900 1952 4.594123 TGCCATCATGCAATCATTTAGG 57.406 40.909 0.00 0.00 38.56 2.69
1901 1953 5.778862 TGATGCCATCATGCAATCATTTAG 58.221 37.500 2.53 0.00 45.84 1.85
2081 2133 4.713814 TGATCCTCTGCAGTAAGACAGAAT 59.286 41.667 14.67 0.00 42.12 2.40
2234 2289 2.170607 ACCGCTGCTGTTTATCATAGGT 59.829 45.455 0.00 0.00 0.00 3.08
2710 2769 7.926555 GGGATGTGGGATAGATGTATTTATACG 59.073 40.741 0.00 0.00 36.06 3.06
3281 3533 9.061435 GCCTATCTTCTATGCTAGTTTTGAAAT 57.939 33.333 0.00 0.00 0.00 2.17
3282 3534 7.224753 CGCCTATCTTCTATGCTAGTTTTGAAA 59.775 37.037 0.00 0.00 0.00 2.69
3307 3559 2.946990 AGGACCTGTTTTTGGTTACACG 59.053 45.455 0.00 0.00 38.03 4.49
3701 3954 6.418057 AGAGAGGATTACAATTAGCTCTGG 57.582 41.667 0.00 0.00 30.93 3.86
3803 4056 7.535139 AGAAATTTAAACATATCACACACCCG 58.465 34.615 0.00 0.00 0.00 5.28
4304 4695 9.950680 GCAAATGTACTTACAGCACATAATATT 57.049 29.630 0.00 0.00 39.92 1.28
4306 4697 8.499403 TGCAAATGTACTTACAGCACATAATA 57.501 30.769 0.00 0.00 39.92 0.98
4343 4735 7.064728 ACTCGAGGTTGTATTCTTAAAGCATTC 59.935 37.037 18.41 0.00 0.00 2.67
4365 4757 7.219917 TCAAAAGCTAAAACAATGTTTGACTCG 59.780 33.333 12.50 1.24 30.73 4.18
4381 4773 7.665559 ACAAGACCATGATAAGTCAAAAGCTAA 59.334 33.333 0.00 0.00 38.01 3.09
4382 4774 7.168219 ACAAGACCATGATAAGTCAAAAGCTA 58.832 34.615 0.00 0.00 38.01 3.32
4383 4775 6.006449 ACAAGACCATGATAAGTCAAAAGCT 58.994 36.000 0.00 0.00 38.01 3.74
4384 4776 6.259550 ACAAGACCATGATAAGTCAAAAGC 57.740 37.500 0.00 0.00 38.01 3.51
4573 4965 8.830580 ACTCCATCGACAACATTAATTCAATAG 58.169 33.333 0.00 0.00 0.00 1.73
4583 4975 8.397906 CAAATATGTTACTCCATCGACAACATT 58.602 33.333 3.84 0.00 39.72 2.71
5031 5472 3.387374 ACTGCCCAGAATCATAGTCAGAG 59.613 47.826 1.69 0.00 0.00 3.35
5294 5735 4.957971 ACTTTACAAATTGCATCGACGAG 58.042 39.130 3.01 0.00 0.00 4.18
5297 5738 4.088648 CGGACTTTACAAATTGCATCGAC 58.911 43.478 0.00 0.00 0.00 4.20
5567 6382 0.098728 AATGATGTAAGTTGCCGCGC 59.901 50.000 0.00 0.00 0.00 6.86
5569 6384 3.304659 CCCATAATGATGTAAGTTGCCGC 60.305 47.826 0.00 0.00 0.00 6.53
5570 6385 3.253188 CCCCATAATGATGTAAGTTGCCG 59.747 47.826 0.00 0.00 0.00 5.69
5572 6387 3.005791 GCCCCCATAATGATGTAAGTTGC 59.994 47.826 0.00 0.00 0.00 4.17
5611 6428 9.546428 CACATATTCTATCCACACTCAACAATA 57.454 33.333 0.00 0.00 0.00 1.90
5612 6429 7.012704 GCACATATTCTATCCACACTCAACAAT 59.987 37.037 0.00 0.00 0.00 2.71
5628 6445 3.558746 GCATCCTGCCTAGCACATATTCT 60.559 47.826 0.00 0.00 37.42 2.40
5679 6496 1.176619 TCCGAAGAACAGCTCACGGA 61.177 55.000 0.00 0.00 45.87 4.69
5716 6533 4.988716 TCCCGTGAGCTGTCCCGT 62.989 66.667 0.00 0.00 0.00 5.28
5717 6534 4.135153 CTCCCGTGAGCTGTCCCG 62.135 72.222 0.00 0.00 0.00 5.14
5744 6561 1.869132 GGTAACTGGAAAGAAACGCGT 59.131 47.619 5.58 5.58 0.00 6.01
5796 6613 0.251341 CCTTCCAAACCTGGGACCTG 60.251 60.000 0.00 0.00 43.71 4.00
5807 6624 2.268076 GCGCTGGCTTCCTTCCAAA 61.268 57.895 0.00 0.00 35.83 3.28
5837 6654 2.896854 CACACACCTGCACTGCGT 60.897 61.111 0.00 0.00 0.00 5.24
5838 6655 2.896854 ACACACACCTGCACTGCG 60.897 61.111 0.00 0.00 0.00 5.18
5843 6660 1.153188 CACCTCACACACACCTGCA 60.153 57.895 0.00 0.00 0.00 4.41
5844 6661 0.748005 AACACCTCACACACACCTGC 60.748 55.000 0.00 0.00 0.00 4.85
5845 6662 1.016627 CAACACCTCACACACACCTG 58.983 55.000 0.00 0.00 0.00 4.00
5846 6663 0.107214 CCAACACCTCACACACACCT 60.107 55.000 0.00 0.00 0.00 4.00
5847 6664 1.101049 CCCAACACCTCACACACACC 61.101 60.000 0.00 0.00 0.00 4.16
5908 6726 2.048444 TAGTAGTACAGCCTGGACCG 57.952 55.000 2.67 0.00 29.22 4.79
5966 6784 4.361971 ACGCCACCGGGAGAGAGA 62.362 66.667 6.32 0.00 37.43 3.10
5967 6785 4.135153 CACGCCACCGGGAGAGAG 62.135 72.222 6.32 0.00 41.39 3.20
6023 6841 1.822990 CCAGGTTGCTAGGTTCGTCTA 59.177 52.381 0.00 0.00 0.00 2.59
6061 6883 3.634448 AGATCGGACAGTCTATCCAACAG 59.366 47.826 0.00 0.00 35.83 3.16
6073 6895 0.820226 TGCCAGAGAAGATCGGACAG 59.180 55.000 0.00 0.00 0.00 3.51
6169 6991 0.179018 GCCGTTGGAGATGCCCTTAT 60.179 55.000 0.00 0.00 34.97 1.73
6184 7006 2.677003 CCGATTTGCAGAACGCCGT 61.677 57.895 1.07 0.00 41.33 5.68
6187 7009 2.202479 GCCCGATTTGCAGAACGC 60.202 61.111 1.07 0.00 42.89 4.84
6191 7013 1.447838 GACGAGCCCGATTTGCAGA 60.448 57.895 0.00 0.00 39.50 4.26
6193 7015 2.813474 CGACGAGCCCGATTTGCA 60.813 61.111 0.00 0.00 39.50 4.08
6239 7062 2.996734 CCATGTGGTTGGGTGGCC 60.997 66.667 0.00 0.00 32.80 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.