Multiple sequence alignment - TraesCS1D01G125900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G125900 chr1D 100.000 4155 0 0 1 4155 136953803 136949649 0.000000e+00 7673.0
1 TraesCS1D01G125900 chr1D 93.878 196 11 1 3341 3536 23947883 23947689 1.130000e-75 294.0
2 TraesCS1D01G125900 chr1D 96.639 119 2 1 3779 3895 136949795 136949677 3.280000e-46 196.0
3 TraesCS1D01G125900 chr1D 96.639 119 2 1 4009 4127 136950025 136949909 3.280000e-46 196.0
4 TraesCS1D01G125900 chr1D 98.507 67 1 0 3712 3778 136949910 136949844 7.300000e-23 119.0
5 TraesCS1D01G125900 chr1D 98.507 67 1 0 3894 3960 136950092 136950026 7.300000e-23 119.0
6 TraesCS1D01G125900 chr1D 94.340 53 3 0 145 197 481633805 481633857 9.570000e-12 82.4
7 TraesCS1D01G125900 chr1A 96.197 3497 106 14 191 3669 167149606 167153093 0.000000e+00 5696.0
8 TraesCS1D01G125900 chr1A 96.552 116 4 0 3968 4083 167153418 167153533 4.240000e-45 193.0
9 TraesCS1D01G125900 chr1A 94.667 75 4 0 3779 3853 167153459 167153533 2.620000e-22 117.0
10 TraesCS1D01G125900 chr1A 91.837 49 3 1 3850 3897 377597010 377597058 2.680000e-07 67.6
11 TraesCS1D01G125900 chr1A 100.000 34 0 0 1 34 167149570 167149603 3.470000e-06 63.9
12 TraesCS1D01G125900 chr1B 95.638 3278 101 26 442 3685 210211799 210208530 0.000000e+00 5223.0
13 TraesCS1D01G125900 chr1B 97.046 237 7 0 191 427 210212157 210211921 2.330000e-107 399.0
14 TraesCS1D01G125900 chr1B 97.605 167 4 0 3917 4083 210208204 210208038 1.890000e-73 287.0
15 TraesCS1D01G125900 chr1B 95.699 93 4 0 41 133 164842388 164842296 2.590000e-32 150.0
16 TraesCS1D01G125900 chr1B 94.624 93 5 0 41 133 66377911 66377819 1.200000e-30 145.0
17 TraesCS1D01G125900 chr1B 97.333 75 2 0 3779 3853 210208112 210208038 1.210000e-25 128.0
18 TraesCS1D01G125900 chr1B 97.260 73 1 1 4082 4154 156846948 156846877 5.640000e-24 122.0
19 TraesCS1D01G125900 chr1B 97.183 71 2 0 4085 4155 48927151 48927221 2.030000e-23 121.0
20 TraesCS1D01G125900 chr1B 100.000 44 0 0 3735 3778 210208204 210208161 9.570000e-12 82.4
21 TraesCS1D01G125900 chr3D 94.388 196 10 1 3341 3536 402476149 402476343 2.430000e-77 300.0
22 TraesCS1D01G125900 chr3D 97.727 88 2 0 46 133 610203795 610203708 7.190000e-33 152.0
23 TraesCS1D01G125900 chr3D 94.340 53 3 0 145 197 111983633 111983685 9.570000e-12 82.4
24 TraesCS1D01G125900 chr5D 93.878 196 11 1 3341 3536 55336716 55336910 1.130000e-75 294.0
25 TraesCS1D01G125900 chr2D 93.878 196 11 1 3341 3536 8648027 8648221 1.130000e-75 294.0
26 TraesCS1D01G125900 chr2D 96.226 53 2 0 145 197 373889862 373889914 2.060000e-13 87.9
27 TraesCS1D01G125900 chr2D 96.226 53 2 0 145 197 584855337 584855285 2.060000e-13 87.9
28 TraesCS1D01G125900 chr2D 94.000 50 1 2 3847 3895 316329611 316329659 1.600000e-09 75.0
29 TraesCS1D01G125900 chr2D 100.000 39 0 0 3857 3895 2373435 2373397 5.760000e-09 73.1
30 TraesCS1D01G125900 chr2D 97.436 39 1 0 3857 3895 567785452 567785490 2.680000e-07 67.6
31 TraesCS1D01G125900 chr7D 93.367 196 12 1 3341 3536 476878965 476879159 5.260000e-74 289.0
32 TraesCS1D01G125900 chr7D 92.308 130 9 1 3955 4083 129973405 129973534 2.550000e-42 183.0
33 TraesCS1D01G125900 chr7D 94.624 93 5 0 41 133 388040983 388040891 1.200000e-30 145.0
34 TraesCS1D01G125900 chr7D 97.674 43 1 0 3853 3895 462353158 462353116 1.600000e-09 75.0
35 TraesCS1D01G125900 chr7D 100.000 38 0 0 3857 3894 530030920 530030883 2.070000e-08 71.3
36 TraesCS1D01G125900 chr7D 93.478 46 1 1 3853 3896 27047378 27047423 2.680000e-07 67.6
37 TraesCS1D01G125900 chr6D 93.367 196 12 1 3341 3536 117040913 117040719 5.260000e-74 289.0
38 TraesCS1D01G125900 chr6D 94.624 93 5 0 41 133 458143563 458143471 1.200000e-30 145.0
39 TraesCS1D01G125900 chr4D 93.367 196 12 1 3341 3536 200997560 200997754 5.260000e-74 289.0
40 TraesCS1D01G125900 chr4D 94.340 53 3 0 145 197 175092370 175092318 9.570000e-12 82.4
41 TraesCS1D01G125900 chr7A 84.685 222 25 4 3562 3778 129059093 129059310 3.250000e-51 213.0
42 TraesCS1D01G125900 chr7A 92.308 130 9 1 3955 4083 129059328 129059457 2.550000e-42 183.0
43 TraesCS1D01G125900 chr4B 94.624 93 5 0 41 133 444328985 444329077 1.200000e-30 145.0
44 TraesCS1D01G125900 chr3B 94.624 93 5 0 41 133 335843001 335842909 1.200000e-30 145.0
45 TraesCS1D01G125900 chr3B 98.611 72 1 0 4082 4153 117045933 117046004 1.210000e-25 128.0
46 TraesCS1D01G125900 chr3B 95.000 40 2 0 3856 3895 633173114 633173075 3.470000e-06 63.9
47 TraesCS1D01G125900 chr2B 94.624 93 5 0 41 133 36256113 36256205 1.200000e-30 145.0
48 TraesCS1D01G125900 chr2B 95.556 45 1 1 3856 3899 384404231 384404275 2.070000e-08 71.3
49 TraesCS1D01G125900 chr2A 94.624 93 5 0 41 133 102694618 102694710 1.200000e-30 145.0
50 TraesCS1D01G125900 chr2A 95.890 73 3 0 4082 4154 8811771 8811843 7.300000e-23 119.0
51 TraesCS1D01G125900 chrUn 98.630 73 0 1 4083 4155 95230349 95230420 1.210000e-25 128.0
52 TraesCS1D01G125900 chrUn 97.183 71 1 1 4085 4155 67352393 67352324 7.300000e-23 119.0
53 TraesCS1D01G125900 chr7B 97.260 73 2 0 4083 4155 484275171 484275099 1.570000e-24 124.0
54 TraesCS1D01G125900 chr7B 90.000 70 5 1 130 197 640483921 640483852 5.720000e-14 89.8
55 TraesCS1D01G125900 chr7B 94.340 53 3 0 145 197 595064718 595064666 9.570000e-12 82.4
56 TraesCS1D01G125900 chr5B 95.890 73 3 0 4083 4155 70695607 70695535 7.300000e-23 119.0
57 TraesCS1D01G125900 chr5B 97.561 41 0 1 3853 3893 549411854 549411815 7.450000e-08 69.4
58 TraesCS1D01G125900 chr6A 92.982 57 4 0 142 198 1332410 1332466 2.660000e-12 84.2
59 TraesCS1D01G125900 chr5A 94.340 53 3 0 145 197 698500925 698500873 9.570000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G125900 chr1D 136949649 136953803 4154 True 7673.000 7673 100.0000 1 4155 1 chr1D.!!$R2 4154
1 TraesCS1D01G125900 chr1A 167149570 167153533 3963 False 1517.475 5696 96.8540 1 4083 4 chr1A.!!$F2 4082
2 TraesCS1D01G125900 chr1B 210208038 210212157 4119 True 1223.880 5223 97.5244 191 4083 5 chr1B.!!$R4 3892

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.036875 GGTCTTGAGGGGGAGTGTTG 59.963 60.000 0.00 0.0 0.00 3.33 F
147 148 0.038166 TTGAGGGGGAGTGTTGATGC 59.962 55.000 0.00 0.0 0.00 3.91 F
149 150 0.257039 GAGGGGGAGTGTTGATGCAT 59.743 55.000 0.00 0.0 0.00 3.96 F
1621 1758 0.463620 GGCAACAACCTTGCTTGGAA 59.536 50.000 5.12 0.0 44.36 3.53 F
2200 2346 1.614903 CACCAGCCTTCTGATGCAAAA 59.385 47.619 0.00 0.0 42.95 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1087 1196 3.760151 CTGCAAGAAAAGACCATGATGGA 59.240 43.478 20.11 0.0 35.94 3.41 R
1670 1807 5.429681 TCTTATCATTTCGTCCAGGGAAA 57.570 39.130 0.00 0.0 37.74 3.13 R
1941 2085 7.768120 ACAATAACTGTTGCTTTTTCCAAATCA 59.232 29.630 2.69 0.0 32.99 2.57 R
2883 3032 0.034186 CCAAGGAGCCCATACAGCAA 60.034 55.000 0.00 0.0 0.00 3.91 R
3702 3862 0.112412 AACAATGATATCCCCCGCCC 59.888 55.000 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.298103 AGAGAACCACAGAATGCTCATT 57.702 40.909 0.00 0.00 42.53 2.57
35 36 4.008330 AGAGAACCACAGAATGCTCATTG 58.992 43.478 0.00 0.00 42.53 2.82
36 37 3.755378 GAGAACCACAGAATGCTCATTGT 59.245 43.478 0.00 0.00 42.53 2.71
37 38 4.147321 AGAACCACAGAATGCTCATTGTT 58.853 39.130 0.00 0.00 42.53 2.83
38 39 3.928727 ACCACAGAATGCTCATTGTTG 57.071 42.857 0.00 1.84 42.53 3.33
39 40 3.225104 ACCACAGAATGCTCATTGTTGT 58.775 40.909 0.00 2.40 42.53 3.32
40 41 3.638160 ACCACAGAATGCTCATTGTTGTT 59.362 39.130 0.00 0.00 42.53 2.83
41 42 3.985279 CCACAGAATGCTCATTGTTGTTG 59.015 43.478 0.00 0.00 42.53 3.33
42 43 4.500205 CCACAGAATGCTCATTGTTGTTGT 60.500 41.667 0.00 0.00 42.53 3.32
43 44 5.278414 CCACAGAATGCTCATTGTTGTTGTA 60.278 40.000 0.00 0.00 42.53 2.41
44 45 6.384224 CACAGAATGCTCATTGTTGTTGTAT 58.616 36.000 0.00 0.00 42.53 2.29
45 46 6.864685 CACAGAATGCTCATTGTTGTTGTATT 59.135 34.615 0.00 0.00 42.53 1.89
46 47 6.864685 ACAGAATGCTCATTGTTGTTGTATTG 59.135 34.615 0.00 0.00 42.53 1.90
47 48 5.865552 AGAATGCTCATTGTTGTTGTATTGC 59.134 36.000 0.00 0.00 0.00 3.56
48 49 3.911868 TGCTCATTGTTGTTGTATTGCC 58.088 40.909 0.00 0.00 0.00 4.52
49 50 3.573538 TGCTCATTGTTGTTGTATTGCCT 59.426 39.130 0.00 0.00 0.00 4.75
50 51 4.764308 TGCTCATTGTTGTTGTATTGCCTA 59.236 37.500 0.00 0.00 0.00 3.93
51 52 5.106197 TGCTCATTGTTGTTGTATTGCCTAG 60.106 40.000 0.00 0.00 0.00 3.02
52 53 5.106157 GCTCATTGTTGTTGTATTGCCTAGT 60.106 40.000 0.00 0.00 0.00 2.57
53 54 6.494893 TCATTGTTGTTGTATTGCCTAGTC 57.505 37.500 0.00 0.00 0.00 2.59
54 55 6.237901 TCATTGTTGTTGTATTGCCTAGTCT 58.762 36.000 0.00 0.00 0.00 3.24
55 56 6.714810 TCATTGTTGTTGTATTGCCTAGTCTT 59.285 34.615 0.00 0.00 0.00 3.01
56 57 6.952773 TTGTTGTTGTATTGCCTAGTCTTT 57.047 33.333 0.00 0.00 0.00 2.52
57 58 6.952773 TGTTGTTGTATTGCCTAGTCTTTT 57.047 33.333 0.00 0.00 0.00 2.27
58 59 7.341445 TGTTGTTGTATTGCCTAGTCTTTTT 57.659 32.000 0.00 0.00 0.00 1.94
59 60 7.422399 TGTTGTTGTATTGCCTAGTCTTTTTC 58.578 34.615 0.00 0.00 0.00 2.29
60 61 7.067615 TGTTGTTGTATTGCCTAGTCTTTTTCA 59.932 33.333 0.00 0.00 0.00 2.69
61 62 7.759489 TGTTGTATTGCCTAGTCTTTTTCAT 57.241 32.000 0.00 0.00 0.00 2.57
62 63 7.816640 TGTTGTATTGCCTAGTCTTTTTCATC 58.183 34.615 0.00 0.00 0.00 2.92
63 64 7.446931 TGTTGTATTGCCTAGTCTTTTTCATCA 59.553 33.333 0.00 0.00 0.00 3.07
64 65 7.615582 TGTATTGCCTAGTCTTTTTCATCAG 57.384 36.000 0.00 0.00 0.00 2.90
65 66 7.394016 TGTATTGCCTAGTCTTTTTCATCAGA 58.606 34.615 0.00 0.00 0.00 3.27
66 67 8.049117 TGTATTGCCTAGTCTTTTTCATCAGAT 58.951 33.333 0.00 0.00 0.00 2.90
67 68 6.992063 TTGCCTAGTCTTTTTCATCAGATC 57.008 37.500 0.00 0.00 0.00 2.75
68 69 5.111989 TGCCTAGTCTTTTTCATCAGATCG 58.888 41.667 0.00 0.00 0.00 3.69
69 70 4.509600 GCCTAGTCTTTTTCATCAGATCGG 59.490 45.833 0.00 0.00 0.00 4.18
70 71 5.665459 CCTAGTCTTTTTCATCAGATCGGT 58.335 41.667 0.00 0.00 0.00 4.69
71 72 5.751028 CCTAGTCTTTTTCATCAGATCGGTC 59.249 44.000 0.00 0.00 0.00 4.79
72 73 5.413309 AGTCTTTTTCATCAGATCGGTCT 57.587 39.130 0.00 0.00 34.14 3.85
73 74 5.799213 AGTCTTTTTCATCAGATCGGTCTT 58.201 37.500 0.00 0.00 30.42 3.01
74 75 6.234177 AGTCTTTTTCATCAGATCGGTCTTT 58.766 36.000 0.00 0.00 30.42 2.52
75 76 6.712547 AGTCTTTTTCATCAGATCGGTCTTTT 59.287 34.615 0.00 0.00 30.42 2.27
76 77 6.798959 GTCTTTTTCATCAGATCGGTCTTTTG 59.201 38.462 0.00 0.00 30.42 2.44
77 78 5.627499 TTTTCATCAGATCGGTCTTTTGG 57.373 39.130 0.00 0.00 30.42 3.28
78 79 3.981071 TCATCAGATCGGTCTTTTGGT 57.019 42.857 0.00 0.00 30.42 3.67
79 80 4.286297 TCATCAGATCGGTCTTTTGGTT 57.714 40.909 0.00 0.00 30.42 3.67
80 81 4.002982 TCATCAGATCGGTCTTTTGGTTG 58.997 43.478 0.00 0.00 30.42 3.77
81 82 2.151202 TCAGATCGGTCTTTTGGTTGC 58.849 47.619 0.00 0.00 30.42 4.17
82 83 1.879380 CAGATCGGTCTTTTGGTTGCA 59.121 47.619 0.00 0.00 30.42 4.08
83 84 2.489329 CAGATCGGTCTTTTGGTTGCAT 59.511 45.455 0.00 0.00 30.42 3.96
84 85 3.057315 CAGATCGGTCTTTTGGTTGCATT 60.057 43.478 0.00 0.00 30.42 3.56
85 86 2.791383 TCGGTCTTTTGGTTGCATTG 57.209 45.000 0.00 0.00 0.00 2.82
86 87 1.339610 TCGGTCTTTTGGTTGCATTGG 59.660 47.619 0.00 0.00 0.00 3.16
87 88 1.511850 GGTCTTTTGGTTGCATTGGC 58.488 50.000 0.00 0.00 41.68 4.52
88 89 1.070601 GGTCTTTTGGTTGCATTGGCT 59.929 47.619 0.00 0.00 41.91 4.75
89 90 2.298729 GGTCTTTTGGTTGCATTGGCTA 59.701 45.455 0.00 0.00 41.91 3.93
90 91 3.578688 GTCTTTTGGTTGCATTGGCTAG 58.421 45.455 0.00 0.00 41.91 3.42
91 92 3.255642 GTCTTTTGGTTGCATTGGCTAGA 59.744 43.478 0.00 0.00 41.91 2.43
92 93 3.507233 TCTTTTGGTTGCATTGGCTAGAG 59.493 43.478 0.00 0.00 41.91 2.43
93 94 1.176527 TTGGTTGCATTGGCTAGAGC 58.823 50.000 0.00 0.00 41.91 4.09
94 95 0.038021 TGGTTGCATTGGCTAGAGCA 59.962 50.000 3.54 0.00 44.36 4.26
95 96 0.453390 GGTTGCATTGGCTAGAGCAC 59.547 55.000 3.54 0.00 44.36 4.40
96 97 0.453390 GTTGCATTGGCTAGAGCACC 59.547 55.000 3.54 0.00 44.36 5.01
97 98 0.680921 TTGCATTGGCTAGAGCACCC 60.681 55.000 3.54 0.00 44.36 4.61
98 99 1.077501 GCATTGGCTAGAGCACCCA 60.078 57.895 3.54 0.00 44.36 4.51
99 100 1.379642 GCATTGGCTAGAGCACCCAC 61.380 60.000 3.54 0.00 44.36 4.61
100 101 0.254178 CATTGGCTAGAGCACCCACT 59.746 55.000 3.54 0.00 44.36 4.00
101 102 0.995024 ATTGGCTAGAGCACCCACTT 59.005 50.000 3.54 0.00 44.36 3.16
102 103 0.324943 TTGGCTAGAGCACCCACTTC 59.675 55.000 3.54 0.00 44.36 3.01
103 104 0.545309 TGGCTAGAGCACCCACTTCT 60.545 55.000 3.54 0.00 44.36 2.85
104 105 1.273041 TGGCTAGAGCACCCACTTCTA 60.273 52.381 3.54 0.00 44.36 2.10
105 106 1.137282 GGCTAGAGCACCCACTTCTAC 59.863 57.143 3.54 0.00 44.36 2.59
106 107 1.825474 GCTAGAGCACCCACTTCTACA 59.175 52.381 0.00 0.00 41.59 2.74
107 108 2.432510 GCTAGAGCACCCACTTCTACAT 59.567 50.000 0.00 0.00 41.59 2.29
108 109 3.739519 GCTAGAGCACCCACTTCTACATG 60.740 52.174 0.00 0.00 41.59 3.21
109 110 1.556911 AGAGCACCCACTTCTACATGG 59.443 52.381 0.00 0.00 35.59 3.66
110 111 1.279271 GAGCACCCACTTCTACATGGT 59.721 52.381 0.00 0.00 33.80 3.55
111 112 2.500098 GAGCACCCACTTCTACATGGTA 59.500 50.000 0.00 0.00 33.80 3.25
112 113 3.115390 AGCACCCACTTCTACATGGTAT 58.885 45.455 0.00 0.00 33.80 2.73
113 114 3.134804 AGCACCCACTTCTACATGGTATC 59.865 47.826 0.00 0.00 33.80 2.24
114 115 3.118408 GCACCCACTTCTACATGGTATCA 60.118 47.826 0.00 0.00 33.80 2.15
115 116 4.697514 CACCCACTTCTACATGGTATCAG 58.302 47.826 0.00 0.00 33.80 2.90
116 117 4.405680 CACCCACTTCTACATGGTATCAGA 59.594 45.833 0.00 0.00 33.80 3.27
117 118 4.651503 ACCCACTTCTACATGGTATCAGAG 59.348 45.833 0.00 0.00 33.80 3.35
118 119 4.502259 CCCACTTCTACATGGTATCAGAGC 60.502 50.000 0.00 0.00 33.80 4.09
119 120 4.502259 CCACTTCTACATGGTATCAGAGCC 60.502 50.000 0.00 0.00 0.00 4.70
120 121 4.100035 CACTTCTACATGGTATCAGAGCCA 59.900 45.833 0.00 0.00 39.33 4.75
121 122 4.716784 ACTTCTACATGGTATCAGAGCCAA 59.283 41.667 0.00 0.00 38.38 4.52
122 123 4.944619 TCTACATGGTATCAGAGCCAAG 57.055 45.455 0.00 0.10 38.38 3.61
123 124 4.546674 TCTACATGGTATCAGAGCCAAGA 58.453 43.478 0.00 1.07 38.38 3.02
124 125 3.834489 ACATGGTATCAGAGCCAAGAG 57.166 47.619 0.00 1.38 38.38 2.85
125 126 2.437281 ACATGGTATCAGAGCCAAGAGG 59.563 50.000 0.00 0.00 38.38 3.69
126 127 2.254152 TGGTATCAGAGCCAAGAGGT 57.746 50.000 0.00 0.00 37.19 3.85
127 128 2.111384 TGGTATCAGAGCCAAGAGGTC 58.889 52.381 0.00 0.00 43.67 3.85
138 139 3.408251 AAGAGGTCTTGAGGGGGAG 57.592 57.895 0.00 0.00 34.38 4.30
139 140 0.494095 AAGAGGTCTTGAGGGGGAGT 59.506 55.000 0.00 0.00 34.38 3.85
140 141 0.252467 AGAGGTCTTGAGGGGGAGTG 60.252 60.000 0.00 0.00 0.00 3.51
141 142 0.545548 GAGGTCTTGAGGGGGAGTGT 60.546 60.000 0.00 0.00 0.00 3.55
142 143 0.104409 AGGTCTTGAGGGGGAGTGTT 60.104 55.000 0.00 0.00 0.00 3.32
143 144 0.036875 GGTCTTGAGGGGGAGTGTTG 59.963 60.000 0.00 0.00 0.00 3.33
144 145 1.056660 GTCTTGAGGGGGAGTGTTGA 58.943 55.000 0.00 0.00 0.00 3.18
145 146 1.630878 GTCTTGAGGGGGAGTGTTGAT 59.369 52.381 0.00 0.00 0.00 2.57
146 147 1.630369 TCTTGAGGGGGAGTGTTGATG 59.370 52.381 0.00 0.00 0.00 3.07
147 148 0.038166 TTGAGGGGGAGTGTTGATGC 59.962 55.000 0.00 0.00 0.00 3.91
148 149 1.133181 TGAGGGGGAGTGTTGATGCA 61.133 55.000 0.00 0.00 0.00 3.96
149 150 0.257039 GAGGGGGAGTGTTGATGCAT 59.743 55.000 0.00 0.00 0.00 3.96
150 151 0.706433 AGGGGGAGTGTTGATGCATT 59.294 50.000 0.00 0.00 0.00 3.56
151 152 0.819582 GGGGGAGTGTTGATGCATTG 59.180 55.000 0.00 0.00 0.00 2.82
152 153 1.616725 GGGGGAGTGTTGATGCATTGA 60.617 52.381 0.00 0.00 0.00 2.57
153 154 1.474077 GGGGAGTGTTGATGCATTGAC 59.526 52.381 0.00 3.43 0.00 3.18
154 155 2.440409 GGGAGTGTTGATGCATTGACT 58.560 47.619 0.00 0.37 0.00 3.41
155 156 3.609853 GGGAGTGTTGATGCATTGACTA 58.390 45.455 0.00 0.00 0.00 2.59
156 157 3.624861 GGGAGTGTTGATGCATTGACTAG 59.375 47.826 0.00 0.00 0.00 2.57
157 158 4.256920 GGAGTGTTGATGCATTGACTAGT 58.743 43.478 0.00 0.00 0.00 2.57
158 159 4.331168 GGAGTGTTGATGCATTGACTAGTC 59.669 45.833 16.32 16.32 0.00 2.59
159 160 5.157940 AGTGTTGATGCATTGACTAGTCT 57.842 39.130 23.01 1.93 0.00 3.24
160 161 5.174395 AGTGTTGATGCATTGACTAGTCTC 58.826 41.667 23.01 11.79 0.00 3.36
161 162 5.046735 AGTGTTGATGCATTGACTAGTCTCT 60.047 40.000 23.01 8.07 0.00 3.10
162 163 5.641209 GTGTTGATGCATTGACTAGTCTCTT 59.359 40.000 23.01 5.78 0.00 2.85
163 164 5.871524 TGTTGATGCATTGACTAGTCTCTTC 59.128 40.000 23.01 15.38 0.00 2.87
164 165 5.016051 TGATGCATTGACTAGTCTCTTCC 57.984 43.478 23.01 8.83 0.00 3.46
165 166 4.467438 TGATGCATTGACTAGTCTCTTCCA 59.533 41.667 23.01 13.57 0.00 3.53
166 167 5.129980 TGATGCATTGACTAGTCTCTTCCAT 59.870 40.000 23.01 17.03 0.00 3.41
167 168 5.016051 TGCATTGACTAGTCTCTTCCATC 57.984 43.478 23.01 5.73 0.00 3.51
168 169 4.467438 TGCATTGACTAGTCTCTTCCATCA 59.533 41.667 23.01 7.95 0.00 3.07
169 170 5.049167 GCATTGACTAGTCTCTTCCATCAG 58.951 45.833 23.01 3.71 0.00 2.90
170 171 5.163468 GCATTGACTAGTCTCTTCCATCAGA 60.163 44.000 23.01 0.00 0.00 3.27
171 172 6.462768 GCATTGACTAGTCTCTTCCATCAGAT 60.463 42.308 23.01 0.00 0.00 2.90
172 173 6.707440 TTGACTAGTCTCTTCCATCAGATC 57.293 41.667 23.01 0.00 0.00 2.75
173 174 4.819088 TGACTAGTCTCTTCCATCAGATCG 59.181 45.833 23.01 0.00 0.00 3.69
174 175 4.141287 ACTAGTCTCTTCCATCAGATCGG 58.859 47.826 0.00 0.00 0.00 4.18
175 176 3.025322 AGTCTCTTCCATCAGATCGGT 57.975 47.619 0.00 0.00 0.00 4.69
176 177 2.955660 AGTCTCTTCCATCAGATCGGTC 59.044 50.000 0.00 0.00 0.00 4.79
177 178 2.955660 GTCTCTTCCATCAGATCGGTCT 59.044 50.000 0.00 0.00 34.14 3.85
178 179 3.383185 GTCTCTTCCATCAGATCGGTCTT 59.617 47.826 0.00 0.00 30.42 3.01
179 180 4.026744 TCTCTTCCATCAGATCGGTCTTT 58.973 43.478 0.00 0.00 30.42 2.52
180 181 4.467795 TCTCTTCCATCAGATCGGTCTTTT 59.532 41.667 0.00 0.00 30.42 2.27
181 182 4.507710 TCTTCCATCAGATCGGTCTTTTG 58.492 43.478 0.00 0.00 30.42 2.44
182 183 3.266510 TCCATCAGATCGGTCTTTTGG 57.733 47.619 14.89 14.89 36.16 3.28
183 184 2.571653 TCCATCAGATCGGTCTTTTGGT 59.428 45.455 18.67 0.00 36.21 3.67
184 185 3.009033 TCCATCAGATCGGTCTTTTGGTT 59.991 43.478 18.67 0.00 36.21 3.67
185 186 3.127548 CCATCAGATCGGTCTTTTGGTTG 59.872 47.826 13.38 1.42 32.74 3.77
186 187 2.151202 TCAGATCGGTCTTTTGGTTGC 58.849 47.619 0.00 0.00 30.42 4.17
187 188 1.879380 CAGATCGGTCTTTTGGTTGCA 59.121 47.619 0.00 0.00 30.42 4.08
188 189 2.489329 CAGATCGGTCTTTTGGTTGCAT 59.511 45.455 0.00 0.00 30.42 3.96
189 190 3.057315 CAGATCGGTCTTTTGGTTGCATT 60.057 43.478 0.00 0.00 30.42 3.56
223 224 9.758651 AACACACAAATTAATAAGAGGAAAACC 57.241 29.630 0.00 0.00 0.00 3.27
358 359 2.066262 AGTTGCTCGTTACGAATGGTG 58.934 47.619 9.23 0.00 34.74 4.17
491 599 4.920376 AGAACAAAAGACACCAACGATTG 58.080 39.130 0.00 0.00 0.00 2.67
668 777 2.814805 ACCAGATTCTCCAACATGGG 57.185 50.000 0.00 0.00 38.32 4.00
671 780 1.747355 CAGATTCTCCAACATGGGTGC 59.253 52.381 0.00 0.00 38.32 5.01
824 933 2.418692 TGTGCCGTGTTTCGTATGAAT 58.581 42.857 0.00 0.00 37.94 2.57
828 937 3.619483 TGCCGTGTTTCGTATGAATAAGG 59.381 43.478 0.00 4.49 37.94 2.69
945 1054 3.064408 GCGTGCCCCTTGTTATAAACTAC 59.936 47.826 0.00 0.00 0.00 2.73
1026 1135 1.415374 CTGACCTCCACGTAACAACG 58.585 55.000 0.00 0.00 39.31 4.10
1087 1196 7.013369 CCAACTAGTTTGCTTCCTCTTTTAACT 59.987 37.037 5.07 0.00 33.34 2.24
1485 1594 9.598517 AGTTATTTCTCAAGATCTGTGATTCTC 57.401 33.333 0.00 0.00 0.00 2.87
1486 1595 8.825745 GTTATTTCTCAAGATCTGTGATTCTCC 58.174 37.037 0.00 0.00 0.00 3.71
1528 1637 6.827586 AACTTTGCGGTAAGAAAATATGGA 57.172 33.333 0.00 0.00 0.00 3.41
1621 1758 0.463620 GGCAACAACCTTGCTTGGAA 59.536 50.000 5.12 0.00 44.36 3.53
1670 1807 4.559704 CGAAAGTAGAAGTGAGAGCCTTGT 60.560 45.833 0.00 0.00 0.00 3.16
1690 1827 4.912586 TGTTTCCCTGGACGAAATGATAA 58.087 39.130 0.00 0.00 32.19 1.75
1880 2024 7.344095 AGAGGTTGTATACATGTGTAGGTAC 57.656 40.000 9.11 4.62 33.52 3.34
1941 2085 6.491403 GGGACCAGATGCTTCATTGTAAATAT 59.509 38.462 2.07 0.00 0.00 1.28
2081 2225 6.094881 TGCCTAAGGACAATAACACTTTATGC 59.905 38.462 0.00 0.00 0.00 3.14
2200 2346 1.614903 CACCAGCCTTCTGATGCAAAA 59.385 47.619 0.00 0.00 42.95 2.44
2552 2701 5.967088 AGCTGTGGTGAGTACTGTTATTAG 58.033 41.667 0.00 0.00 0.00 1.73
2558 2707 4.421948 GTGAGTACTGTTATTAGCGTGCT 58.578 43.478 0.00 0.00 0.00 4.40
2635 2784 2.755650 ACAACGTTCTAAGCCTGACAG 58.244 47.619 0.00 0.00 0.00 3.51
2883 3032 4.816925 GCTTCTTGACAAGTTTACTCTGGT 59.183 41.667 14.75 0.00 0.00 4.00
2945 3094 8.416329 ACGGTTAGTACAGAAAGAAACTTTAGA 58.584 33.333 0.00 0.00 0.00 2.10
3103 3252 3.801698 TCCTGATATTGAGCAAGCAGAC 58.198 45.455 10.26 0.00 0.00 3.51
3253 3403 7.959651 GCATAATGCGAGGAGAAAATAATAGTG 59.040 37.037 0.00 0.00 31.71 2.74
3412 3571 1.203038 TGTGTTCACAGGGCATCCAAT 60.203 47.619 1.23 0.00 34.83 3.16
3413 3572 1.895131 GTGTTCACAGGGCATCCAATT 59.105 47.619 0.00 0.00 34.83 2.32
3460 3619 5.414454 TGTGTTAAGTTGGGATGATAGCAAC 59.586 40.000 0.00 0.00 0.00 4.17
3461 3620 5.414454 GTGTTAAGTTGGGATGATAGCAACA 59.586 40.000 0.00 0.00 0.00 3.33
3486 3645 1.750193 ACCCTTGCATACGTCAATGG 58.250 50.000 0.00 0.00 35.97 3.16
3488 3647 2.290641 ACCCTTGCATACGTCAATGGAA 60.291 45.455 14.08 10.00 36.05 3.53
3537 3696 0.461870 TTGCCACATACTGCTAGCCG 60.462 55.000 13.29 8.69 0.00 5.52
3540 3699 0.179073 CCACATACTGCTAGCCGCTT 60.179 55.000 13.29 0.00 40.11 4.68
3595 3754 3.427503 GCGGCAACAGCAAGTTTATGTAT 60.428 43.478 0.00 0.00 38.74 2.29
3653 3813 1.404035 ACGGTGACAAGACAAAAAGGC 59.596 47.619 0.00 0.00 0.00 4.35
3701 3861 6.627395 TTGCAAGTATATTACATTTCGGGG 57.373 37.500 0.00 0.00 0.00 5.73
3702 3862 5.067273 TGCAAGTATATTACATTTCGGGGG 58.933 41.667 0.00 0.00 0.00 5.40
3717 3877 2.614013 GGGGGCGGGGGATATCAT 60.614 66.667 4.83 0.00 0.00 2.45
3718 3878 2.238701 GGGGGCGGGGGATATCATT 61.239 63.158 4.83 0.00 0.00 2.57
3719 3879 1.000896 GGGGCGGGGGATATCATTG 60.001 63.158 4.83 0.00 0.00 2.82
3720 3880 1.767692 GGGCGGGGGATATCATTGT 59.232 57.895 4.83 0.00 0.00 2.71
3721 3881 0.112412 GGGCGGGGGATATCATTGTT 59.888 55.000 4.83 0.00 0.00 2.83
3722 3882 1.480498 GGGCGGGGGATATCATTGTTT 60.480 52.381 4.83 0.00 0.00 2.83
3723 3883 2.316108 GGCGGGGGATATCATTGTTTT 58.684 47.619 4.83 0.00 0.00 2.43
3724 3884 3.492337 GGCGGGGGATATCATTGTTTTA 58.508 45.455 4.83 0.00 0.00 1.52
3725 3885 4.086457 GGCGGGGGATATCATTGTTTTAT 58.914 43.478 4.83 0.00 0.00 1.40
3726 3886 5.258051 GGCGGGGGATATCATTGTTTTATA 58.742 41.667 4.83 0.00 0.00 0.98
3727 3887 5.891551 GGCGGGGGATATCATTGTTTTATAT 59.108 40.000 4.83 0.00 0.00 0.86
3728 3888 6.039382 GGCGGGGGATATCATTGTTTTATATC 59.961 42.308 4.83 0.00 33.64 1.63
3729 3889 6.828785 GCGGGGGATATCATTGTTTTATATCT 59.171 38.462 4.83 0.00 34.45 1.98
3730 3890 7.990886 GCGGGGGATATCATTGTTTTATATCTA 59.009 37.037 4.83 0.00 34.45 1.98
3731 3891 9.899661 CGGGGGATATCATTGTTTTATATCTAA 57.100 33.333 4.83 0.00 34.45 2.10
3778 4214 8.768955 GTGATCATATTAGATCGTTCAAAAGCT 58.231 33.333 0.00 0.00 45.81 3.74
3779 4215 8.768019 TGATCATATTAGATCGTTCAAAAGCTG 58.232 33.333 0.00 0.00 45.81 4.24
3780 4216 8.893219 ATCATATTAGATCGTTCAAAAGCTGA 57.107 30.769 0.00 0.00 0.00 4.26
3782 4218 8.820933 TCATATTAGATCGTTCAAAAGCTGAAG 58.179 33.333 0.00 0.00 44.83 3.02
3783 4219 5.862924 TTAGATCGTTCAAAAGCTGAAGG 57.137 39.130 0.00 0.00 44.83 3.46
3788 4224 3.000082 GTTCAAAAGCTGAAGGAACGG 58.000 47.619 0.00 0.00 44.83 4.44
3789 4225 0.951558 TCAAAAGCTGAAGGAACGGC 59.048 50.000 0.00 0.00 41.86 5.68
3806 4242 1.060698 CGGCTACGTTAAGCTTTCAGC 59.939 52.381 3.20 6.59 42.37 4.26
3807 4243 3.244181 CGGCTACGTTAAGCTTTCAGCT 61.244 50.000 3.20 0.00 44.40 4.24
3808 4244 3.977489 CGGCTACGTTAAGCTTTCAGCTA 60.977 47.826 3.20 0.00 42.75 3.32
3809 4245 5.262889 CGGCTACGTTAAGCTTTCAGCTAT 61.263 45.833 3.20 0.00 42.75 2.97
3810 4246 7.234419 CGGCTACGTTAAGCTTTCAGCTATG 62.234 48.000 3.20 0.00 42.75 2.23
3821 4257 6.112994 GCTTTCAGCTATGGTTTTCTAGAC 57.887 41.667 0.00 0.00 38.45 2.59
3822 4258 5.220491 GCTTTCAGCTATGGTTTTCTAGACG 60.220 44.000 0.00 0.00 38.45 4.18
3823 4259 5.654603 TTCAGCTATGGTTTTCTAGACGA 57.345 39.130 0.00 0.00 0.00 4.20
3824 4260 5.654603 TCAGCTATGGTTTTCTAGACGAA 57.345 39.130 0.00 0.00 0.00 3.85
3825 4261 6.222038 TCAGCTATGGTTTTCTAGACGAAT 57.778 37.500 0.00 0.00 0.00 3.34
3826 4262 6.640518 TCAGCTATGGTTTTCTAGACGAATT 58.359 36.000 0.00 0.00 0.00 2.17
3827 4263 6.535150 TCAGCTATGGTTTTCTAGACGAATTG 59.465 38.462 0.00 0.00 0.00 2.32
3828 4264 6.313905 CAGCTATGGTTTTCTAGACGAATTGT 59.686 38.462 0.00 0.00 0.00 2.71
3829 4265 6.313905 AGCTATGGTTTTCTAGACGAATTGTG 59.686 38.462 0.00 0.00 0.00 3.33
3830 4266 4.742438 TGGTTTTCTAGACGAATTGTGC 57.258 40.909 0.00 0.00 0.00 4.57
3831 4267 4.130857 TGGTTTTCTAGACGAATTGTGCA 58.869 39.130 0.00 0.00 0.00 4.57
3832 4268 4.576873 TGGTTTTCTAGACGAATTGTGCAA 59.423 37.500 0.00 0.00 0.00 4.08
3833 4269 5.240623 TGGTTTTCTAGACGAATTGTGCAAT 59.759 36.000 0.00 0.00 0.00 3.56
3834 4270 6.149633 GGTTTTCTAGACGAATTGTGCAATT 58.850 36.000 9.60 9.60 43.14 2.32
3835 4271 6.088085 GGTTTTCTAGACGAATTGTGCAATTG 59.912 38.462 14.03 0.00 40.77 2.32
3836 4272 4.340894 TCTAGACGAATTGTGCAATTGC 57.659 40.909 23.69 23.69 40.77 3.56
3837 4273 4.002982 TCTAGACGAATTGTGCAATTGCT 58.997 39.130 29.37 10.45 40.77 3.91
3838 4274 3.648339 AGACGAATTGTGCAATTGCTT 57.352 38.095 29.37 16.34 40.77 3.91
3839 4275 3.981211 AGACGAATTGTGCAATTGCTTT 58.019 36.364 29.37 17.51 40.77 3.51
3840 4276 5.119931 AGACGAATTGTGCAATTGCTTTA 57.880 34.783 29.37 15.24 40.77 1.85
3841 4277 5.527951 AGACGAATTGTGCAATTGCTTTAA 58.472 33.333 29.37 20.70 40.77 1.52
3842 4278 5.402270 AGACGAATTGTGCAATTGCTTTAAC 59.598 36.000 29.37 19.66 40.77 2.01
3843 4279 5.046529 ACGAATTGTGCAATTGCTTTAACA 58.953 33.333 29.37 21.89 40.77 2.41
3844 4280 5.175491 ACGAATTGTGCAATTGCTTTAACAG 59.825 36.000 29.37 18.01 40.77 3.16
3861 4297 9.893305 GCTTTAACAGCTTCTAATACTGAAAAA 57.107 29.630 0.00 0.00 46.27 1.94
3864 4300 7.454260 AACAGCTTCTAATACTGAAAAAGGG 57.546 36.000 0.00 0.00 35.38 3.95
3865 4301 6.543735 ACAGCTTCTAATACTGAAAAAGGGT 58.456 36.000 0.00 0.00 35.38 4.34
3866 4302 7.004691 ACAGCTTCTAATACTGAAAAAGGGTT 58.995 34.615 0.00 0.00 35.38 4.11
3867 4303 7.505923 ACAGCTTCTAATACTGAAAAAGGGTTT 59.494 33.333 0.00 0.00 35.38 3.27
3868 4304 8.023706 CAGCTTCTAATACTGAAAAAGGGTTTC 58.976 37.037 0.00 0.00 33.10 2.78
3869 4305 7.176865 AGCTTCTAATACTGAAAAAGGGTTTCC 59.823 37.037 0.00 0.00 0.00 3.13
3870 4306 7.577046 GCTTCTAATACTGAAAAAGGGTTTCCC 60.577 40.741 0.00 0.00 45.90 3.97
3886 4322 7.764141 GGGTTTCCCCGCTTTATATTATAAA 57.236 36.000 8.26 8.26 42.41 1.40
3887 4323 7.823665 GGGTTTCCCCGCTTTATATTATAAAG 58.176 38.462 23.28 23.28 42.41 1.85
3888 4324 7.576287 GGGTTTCCCCGCTTTATATTATAAAGC 60.576 40.741 32.67 32.67 45.01 3.51
3931 4367 5.881923 TCTAACTAGTCACCAAACCAAGT 57.118 39.130 0.00 0.00 0.00 3.16
3932 4368 6.982160 TCTAACTAGTCACCAAACCAAGTA 57.018 37.500 0.00 0.00 0.00 2.24
3933 4369 6.752168 TCTAACTAGTCACCAAACCAAGTAC 58.248 40.000 0.00 0.00 0.00 2.73
3934 4370 3.986277 ACTAGTCACCAAACCAAGTACG 58.014 45.455 0.00 0.00 0.00 3.67
3935 4371 2.994186 AGTCACCAAACCAAGTACGT 57.006 45.000 0.00 0.00 0.00 3.57
3936 4372 2.557317 AGTCACCAAACCAAGTACGTG 58.443 47.619 0.00 1.33 0.00 4.49
3937 4373 2.168936 AGTCACCAAACCAAGTACGTGA 59.831 45.455 10.61 1.24 0.00 4.35
3938 4374 3.135994 GTCACCAAACCAAGTACGTGAT 58.864 45.455 10.61 0.00 33.25 3.06
3939 4375 3.185797 GTCACCAAACCAAGTACGTGATC 59.814 47.826 10.61 0.00 33.25 2.92
3940 4376 3.135225 CACCAAACCAAGTACGTGATCA 58.865 45.455 10.61 0.00 0.00 2.92
3941 4377 3.751175 CACCAAACCAAGTACGTGATCAT 59.249 43.478 10.61 0.00 0.00 2.45
3942 4378 4.932799 CACCAAACCAAGTACGTGATCATA 59.067 41.667 10.61 0.00 0.00 2.15
3943 4379 5.584649 CACCAAACCAAGTACGTGATCATAT 59.415 40.000 10.61 0.00 0.00 1.78
3944 4380 6.093495 CACCAAACCAAGTACGTGATCATATT 59.907 38.462 10.61 0.00 0.00 1.28
3945 4381 7.279090 CACCAAACCAAGTACGTGATCATATTA 59.721 37.037 10.61 0.00 0.00 0.98
3946 4382 7.494625 ACCAAACCAAGTACGTGATCATATTAG 59.505 37.037 10.61 0.00 0.00 1.73
3947 4383 7.709182 CCAAACCAAGTACGTGATCATATTAGA 59.291 37.037 10.61 0.00 0.00 2.10
3948 4384 9.261180 CAAACCAAGTACGTGATCATATTAGAT 57.739 33.333 10.61 0.00 0.00 1.98
3949 4385 9.477484 AAACCAAGTACGTGATCATATTAGATC 57.523 33.333 10.61 0.00 43.69 2.75
3950 4386 7.306213 ACCAAGTACGTGATCATATTAGATCG 58.694 38.462 10.61 0.00 45.81 3.69
3951 4387 7.040617 ACCAAGTACGTGATCATATTAGATCGT 60.041 37.037 10.61 3.73 45.81 3.73
3952 4388 7.808381 CCAAGTACGTGATCATATTAGATCGTT 59.192 37.037 10.61 0.00 45.81 3.85
3953 4389 8.841822 CAAGTACGTGATCATATTAGATCGTTC 58.158 37.037 2.23 4.83 45.81 3.95
3954 4390 8.095937 AGTACGTGATCATATTAGATCGTTCA 57.904 34.615 8.70 0.00 45.81 3.18
3955 4391 8.565416 AGTACGTGATCATATTAGATCGTTCAA 58.435 33.333 8.70 0.00 45.81 2.69
3956 4392 9.177304 GTACGTGATCATATTAGATCGTTCAAA 57.823 33.333 8.70 0.00 45.81 2.69
3957 4393 8.642908 ACGTGATCATATTAGATCGTTCAAAA 57.357 30.769 0.00 0.00 45.81 2.44
3958 4394 8.755941 ACGTGATCATATTAGATCGTTCAAAAG 58.244 33.333 0.00 0.00 45.81 2.27
3959 4395 7.737744 CGTGATCATATTAGATCGTTCAAAAGC 59.262 37.037 0.00 0.00 45.81 3.51
3960 4396 8.012241 GTGATCATATTAGATCGTTCAAAAGCC 58.988 37.037 0.00 0.00 45.81 4.35
3961 4397 7.714813 TGATCATATTAGATCGTTCAAAAGCCA 59.285 33.333 0.00 0.00 45.81 4.75
3962 4398 7.482654 TCATATTAGATCGTTCAAAAGCCAG 57.517 36.000 0.00 0.00 0.00 4.85
3963 4399 7.272244 TCATATTAGATCGTTCAAAAGCCAGA 58.728 34.615 0.00 0.00 0.00 3.86
3964 4400 7.768582 TCATATTAGATCGTTCAAAAGCCAGAA 59.231 33.333 0.00 0.00 0.00 3.02
3965 4401 5.607119 TTAGATCGTTCAAAAGCCAGAAC 57.393 39.130 0.00 0.00 40.45 3.01
4088 4524 6.657836 GCTTTAACAGCTTCTAATACCGAA 57.342 37.500 0.00 0.00 46.27 4.30
4089 4525 7.068692 GCTTTAACAGCTTCTAATACCGAAA 57.931 36.000 0.00 0.00 46.27 3.46
4090 4526 7.524065 GCTTTAACAGCTTCTAATACCGAAAA 58.476 34.615 0.00 0.00 46.27 2.29
4091 4527 8.019094 GCTTTAACAGCTTCTAATACCGAAAAA 58.981 33.333 0.00 0.00 46.27 1.94
4092 4528 9.543018 CTTTAACAGCTTCTAATACCGAAAAAG 57.457 33.333 0.00 0.00 0.00 2.27
4093 4529 6.496338 AACAGCTTCTAATACCGAAAAAGG 57.504 37.500 0.00 0.00 37.30 3.11
4094 4530 4.941873 ACAGCTTCTAATACCGAAAAAGGG 59.058 41.667 0.00 0.00 35.02 3.95
4095 4531 4.941873 CAGCTTCTAATACCGAAAAAGGGT 59.058 41.667 0.00 0.00 41.62 4.34
4096 4532 5.414765 CAGCTTCTAATACCGAAAAAGGGTT 59.585 40.000 0.00 0.00 38.99 4.11
4097 4533 6.008331 AGCTTCTAATACCGAAAAAGGGTTT 58.992 36.000 0.00 0.00 38.99 3.27
4098 4534 6.150641 AGCTTCTAATACCGAAAAAGGGTTTC 59.849 38.462 0.00 0.00 38.99 2.78
4099 4535 6.624423 GCTTCTAATACCGAAAAAGGGTTTCC 60.624 42.308 0.00 0.00 38.99 3.13
4100 4536 5.255687 TCTAATACCGAAAAAGGGTTTCCC 58.744 41.667 0.00 0.00 45.90 3.97
4134 4570 8.677148 ATATTATAAAGCAAACATCACCGAGT 57.323 30.769 0.00 0.00 0.00 4.18
4135 4571 9.772973 ATATTATAAAGCAAACATCACCGAGTA 57.227 29.630 0.00 0.00 0.00 2.59
4136 4572 5.796350 ATAAAGCAAACATCACCGAGTAC 57.204 39.130 0.00 0.00 0.00 2.73
4137 4573 2.831685 AGCAAACATCACCGAGTACA 57.168 45.000 0.00 0.00 0.00 2.90
4138 4574 3.334583 AGCAAACATCACCGAGTACAT 57.665 42.857 0.00 0.00 0.00 2.29
4139 4575 3.674997 AGCAAACATCACCGAGTACATT 58.325 40.909 0.00 0.00 0.00 2.71
4140 4576 3.684788 AGCAAACATCACCGAGTACATTC 59.315 43.478 0.00 0.00 0.00 2.67
4141 4577 3.483574 GCAAACATCACCGAGTACATTCG 60.484 47.826 0.00 0.00 40.18 3.34
4142 4578 3.861276 AACATCACCGAGTACATTCGA 57.139 42.857 6.12 0.00 43.03 3.71
4143 4579 3.422417 ACATCACCGAGTACATTCGAG 57.578 47.619 6.12 0.11 43.03 4.04
4144 4580 3.014623 ACATCACCGAGTACATTCGAGA 58.985 45.455 6.12 4.59 43.03 4.04
4145 4581 3.632604 ACATCACCGAGTACATTCGAGAT 59.367 43.478 6.12 6.41 43.03 2.75
4146 4582 4.820173 ACATCACCGAGTACATTCGAGATA 59.180 41.667 6.12 0.00 43.03 1.98
4147 4583 4.808077 TCACCGAGTACATTCGAGATAC 57.192 45.455 6.12 0.00 43.03 2.24
4148 4584 3.562973 TCACCGAGTACATTCGAGATACC 59.437 47.826 6.12 0.00 43.03 2.73
4149 4585 2.547211 ACCGAGTACATTCGAGATACCG 59.453 50.000 6.12 0.00 43.03 4.02
4150 4586 2.804527 CCGAGTACATTCGAGATACCGA 59.195 50.000 6.12 0.00 43.03 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.952773 AAAAGACTAGGCAATACAACAACA 57.047 33.333 0.00 0.00 0.00 3.33
35 36 7.422399 TGAAAAAGACTAGGCAATACAACAAC 58.578 34.615 0.00 0.00 0.00 3.32
36 37 7.575414 TGAAAAAGACTAGGCAATACAACAA 57.425 32.000 0.00 0.00 0.00 2.83
37 38 7.446931 TGATGAAAAAGACTAGGCAATACAACA 59.553 33.333 0.00 0.00 0.00 3.33
38 39 7.816640 TGATGAAAAAGACTAGGCAATACAAC 58.183 34.615 0.00 0.00 0.00 3.32
39 40 7.882791 TCTGATGAAAAAGACTAGGCAATACAA 59.117 33.333 0.00 0.00 0.00 2.41
40 41 7.394016 TCTGATGAAAAAGACTAGGCAATACA 58.606 34.615 0.00 0.00 0.00 2.29
41 42 7.849804 TCTGATGAAAAAGACTAGGCAATAC 57.150 36.000 0.00 0.00 0.00 1.89
42 43 7.439356 CGATCTGATGAAAAAGACTAGGCAATA 59.561 37.037 0.00 0.00 0.00 1.90
43 44 6.259608 CGATCTGATGAAAAAGACTAGGCAAT 59.740 38.462 0.00 0.00 0.00 3.56
44 45 5.582269 CGATCTGATGAAAAAGACTAGGCAA 59.418 40.000 0.00 0.00 0.00 4.52
45 46 5.111989 CGATCTGATGAAAAAGACTAGGCA 58.888 41.667 0.00 0.00 0.00 4.75
46 47 4.509600 CCGATCTGATGAAAAAGACTAGGC 59.490 45.833 0.00 0.00 0.00 3.93
47 48 5.665459 ACCGATCTGATGAAAAAGACTAGG 58.335 41.667 0.00 0.00 0.00 3.02
48 49 6.568869 AGACCGATCTGATGAAAAAGACTAG 58.431 40.000 0.00 0.00 32.29 2.57
49 50 6.531503 AGACCGATCTGATGAAAAAGACTA 57.468 37.500 0.00 0.00 32.29 2.59
50 51 5.413309 AGACCGATCTGATGAAAAAGACT 57.587 39.130 0.00 0.00 32.29 3.24
51 52 6.487689 AAAGACCGATCTGATGAAAAAGAC 57.512 37.500 0.00 0.00 34.48 3.01
52 53 6.072508 CCAAAAGACCGATCTGATGAAAAAGA 60.073 38.462 0.00 0.00 34.48 2.52
53 54 6.088824 CCAAAAGACCGATCTGATGAAAAAG 58.911 40.000 0.00 0.00 34.48 2.27
54 55 5.534654 ACCAAAAGACCGATCTGATGAAAAA 59.465 36.000 0.00 0.00 34.48 1.94
55 56 5.070001 ACCAAAAGACCGATCTGATGAAAA 58.930 37.500 0.00 0.00 34.48 2.29
56 57 4.651778 ACCAAAAGACCGATCTGATGAAA 58.348 39.130 0.00 0.00 34.48 2.69
57 58 4.286297 ACCAAAAGACCGATCTGATGAA 57.714 40.909 0.00 0.00 34.48 2.57
58 59 3.981071 ACCAAAAGACCGATCTGATGA 57.019 42.857 0.00 0.00 34.48 2.92
59 60 3.426695 GCAACCAAAAGACCGATCTGATG 60.427 47.826 0.00 0.00 34.48 3.07
60 61 2.749621 GCAACCAAAAGACCGATCTGAT 59.250 45.455 0.00 0.00 34.48 2.90
61 62 2.151202 GCAACCAAAAGACCGATCTGA 58.849 47.619 0.00 0.00 34.48 3.27
62 63 1.879380 TGCAACCAAAAGACCGATCTG 59.121 47.619 0.00 0.00 34.48 2.90
63 64 2.270352 TGCAACCAAAAGACCGATCT 57.730 45.000 0.00 0.00 36.42 2.75
64 65 3.244976 CAATGCAACCAAAAGACCGATC 58.755 45.455 0.00 0.00 0.00 3.69
65 66 2.029110 CCAATGCAACCAAAAGACCGAT 60.029 45.455 0.00 0.00 0.00 4.18
66 67 1.339610 CCAATGCAACCAAAAGACCGA 59.660 47.619 0.00 0.00 0.00 4.69
67 68 1.782044 CCAATGCAACCAAAAGACCG 58.218 50.000 0.00 0.00 0.00 4.79
68 69 1.070601 AGCCAATGCAACCAAAAGACC 59.929 47.619 0.00 0.00 41.13 3.85
69 70 2.531522 AGCCAATGCAACCAAAAGAC 57.468 45.000 0.00 0.00 41.13 3.01
70 71 3.495331 TCTAGCCAATGCAACCAAAAGA 58.505 40.909 0.00 0.00 41.13 2.52
71 72 3.841643 CTCTAGCCAATGCAACCAAAAG 58.158 45.455 0.00 0.00 41.13 2.27
72 73 2.029110 GCTCTAGCCAATGCAACCAAAA 60.029 45.455 0.00 0.00 41.13 2.44
73 74 1.545582 GCTCTAGCCAATGCAACCAAA 59.454 47.619 0.00 0.00 41.13 3.28
74 75 1.176527 GCTCTAGCCAATGCAACCAA 58.823 50.000 0.00 0.00 41.13 3.67
75 76 0.038021 TGCTCTAGCCAATGCAACCA 59.962 50.000 0.00 0.00 41.13 3.67
76 77 0.453390 GTGCTCTAGCCAATGCAACC 59.547 55.000 0.00 0.00 41.13 3.77
77 78 0.453390 GGTGCTCTAGCCAATGCAAC 59.547 55.000 0.00 0.00 41.13 4.17
78 79 0.680921 GGGTGCTCTAGCCAATGCAA 60.681 55.000 0.00 0.00 46.44 4.08
79 80 1.077501 GGGTGCTCTAGCCAATGCA 60.078 57.895 0.00 0.00 46.44 3.96
80 81 3.833304 GGGTGCTCTAGCCAATGC 58.167 61.111 0.00 0.00 46.44 3.56
86 87 1.825474 TGTAGAAGTGGGTGCTCTAGC 59.175 52.381 0.00 0.00 42.50 3.42
87 88 3.181471 CCATGTAGAAGTGGGTGCTCTAG 60.181 52.174 0.00 0.00 0.00 2.43
88 89 2.766263 CCATGTAGAAGTGGGTGCTCTA 59.234 50.000 0.00 0.00 0.00 2.43
89 90 1.556911 CCATGTAGAAGTGGGTGCTCT 59.443 52.381 0.00 0.00 0.00 4.09
90 91 1.279271 ACCATGTAGAAGTGGGTGCTC 59.721 52.381 0.00 0.00 39.86 4.26
91 92 1.362224 ACCATGTAGAAGTGGGTGCT 58.638 50.000 0.00 0.00 39.86 4.40
92 93 3.118408 TGATACCATGTAGAAGTGGGTGC 60.118 47.826 0.00 0.00 39.86 5.01
93 94 4.405680 TCTGATACCATGTAGAAGTGGGTG 59.594 45.833 0.00 0.00 39.86 4.61
94 95 4.620723 TCTGATACCATGTAGAAGTGGGT 58.379 43.478 0.00 0.00 39.86 4.51
95 96 4.502259 GCTCTGATACCATGTAGAAGTGGG 60.502 50.000 0.00 0.00 39.86 4.61
96 97 4.502259 GGCTCTGATACCATGTAGAAGTGG 60.502 50.000 0.00 0.00 41.35 4.00
97 98 4.100035 TGGCTCTGATACCATGTAGAAGTG 59.900 45.833 0.00 0.00 0.00 3.16
98 99 4.290093 TGGCTCTGATACCATGTAGAAGT 58.710 43.478 0.00 0.00 0.00 3.01
99 100 4.944619 TGGCTCTGATACCATGTAGAAG 57.055 45.455 0.00 0.00 0.00 2.85
100 101 4.962362 TCTTGGCTCTGATACCATGTAGAA 59.038 41.667 10.55 0.00 35.42 2.10
101 102 4.546674 TCTTGGCTCTGATACCATGTAGA 58.453 43.478 10.55 4.92 35.42 2.59
102 103 4.262377 CCTCTTGGCTCTGATACCATGTAG 60.262 50.000 10.55 3.17 35.42 2.74
103 104 3.643320 CCTCTTGGCTCTGATACCATGTA 59.357 47.826 10.55 0.00 35.42 2.29
104 105 2.437281 CCTCTTGGCTCTGATACCATGT 59.563 50.000 10.55 0.00 35.42 3.21
105 106 2.437281 ACCTCTTGGCTCTGATACCATG 59.563 50.000 0.91 4.05 35.42 3.66
106 107 2.703007 GACCTCTTGGCTCTGATACCAT 59.297 50.000 0.91 0.00 35.42 3.55
107 108 2.111384 GACCTCTTGGCTCTGATACCA 58.889 52.381 0.00 0.00 36.63 3.25
108 109 2.393646 AGACCTCTTGGCTCTGATACC 58.606 52.381 0.00 0.00 36.63 2.73
120 121 0.494095 ACTCCCCCTCAAGACCTCTT 59.506 55.000 0.00 0.00 36.45 2.85
121 122 0.252467 CACTCCCCCTCAAGACCTCT 60.252 60.000 0.00 0.00 0.00 3.69
122 123 0.545548 ACACTCCCCCTCAAGACCTC 60.546 60.000 0.00 0.00 0.00 3.85
123 124 0.104409 AACACTCCCCCTCAAGACCT 60.104 55.000 0.00 0.00 0.00 3.85
124 125 0.036875 CAACACTCCCCCTCAAGACC 59.963 60.000 0.00 0.00 0.00 3.85
125 126 1.056660 TCAACACTCCCCCTCAAGAC 58.943 55.000 0.00 0.00 0.00 3.01
126 127 1.630369 CATCAACACTCCCCCTCAAGA 59.370 52.381 0.00 0.00 0.00 3.02
127 128 1.952367 GCATCAACACTCCCCCTCAAG 60.952 57.143 0.00 0.00 0.00 3.02
128 129 0.038166 GCATCAACACTCCCCCTCAA 59.962 55.000 0.00 0.00 0.00 3.02
129 130 1.133181 TGCATCAACACTCCCCCTCA 61.133 55.000 0.00 0.00 0.00 3.86
130 131 0.257039 ATGCATCAACACTCCCCCTC 59.743 55.000 0.00 0.00 0.00 4.30
131 132 0.706433 AATGCATCAACACTCCCCCT 59.294 50.000 0.00 0.00 0.00 4.79
132 133 0.819582 CAATGCATCAACACTCCCCC 59.180 55.000 0.00 0.00 0.00 5.40
133 134 1.474077 GTCAATGCATCAACACTCCCC 59.526 52.381 0.00 0.00 0.00 4.81
134 135 2.440409 AGTCAATGCATCAACACTCCC 58.560 47.619 0.00 0.00 0.00 4.30
135 136 4.256920 ACTAGTCAATGCATCAACACTCC 58.743 43.478 0.00 0.00 0.00 3.85
136 137 5.174395 AGACTAGTCAATGCATCAACACTC 58.826 41.667 24.44 0.00 0.00 3.51
137 138 5.046735 AGAGACTAGTCAATGCATCAACACT 60.047 40.000 24.44 2.39 0.00 3.55
138 139 5.174395 AGAGACTAGTCAATGCATCAACAC 58.826 41.667 24.44 0.00 0.00 3.32
139 140 5.411831 AGAGACTAGTCAATGCATCAACA 57.588 39.130 24.44 0.00 0.00 3.33
140 141 5.293079 GGAAGAGACTAGTCAATGCATCAAC 59.707 44.000 24.44 0.99 0.00 3.18
141 142 5.046376 TGGAAGAGACTAGTCAATGCATCAA 60.046 40.000 24.44 4.79 0.00 2.57
142 143 4.467438 TGGAAGAGACTAGTCAATGCATCA 59.533 41.667 24.44 10.58 0.00 3.07
143 144 5.016051 TGGAAGAGACTAGTCAATGCATC 57.984 43.478 24.44 11.93 0.00 3.91
144 145 5.129980 TGATGGAAGAGACTAGTCAATGCAT 59.870 40.000 24.44 22.46 0.00 3.96
145 146 4.467438 TGATGGAAGAGACTAGTCAATGCA 59.533 41.667 24.44 19.26 0.00 3.96
146 147 5.016051 TGATGGAAGAGACTAGTCAATGC 57.984 43.478 24.44 14.71 0.00 3.56
147 148 6.462552 TCTGATGGAAGAGACTAGTCAATG 57.537 41.667 24.44 3.35 0.00 2.82
148 149 6.016360 CGATCTGATGGAAGAGACTAGTCAAT 60.016 42.308 24.44 9.69 0.00 2.57
149 150 5.298026 CGATCTGATGGAAGAGACTAGTCAA 59.702 44.000 24.44 3.60 0.00 3.18
150 151 4.819088 CGATCTGATGGAAGAGACTAGTCA 59.181 45.833 24.44 3.85 0.00 3.41
151 152 4.215399 CCGATCTGATGGAAGAGACTAGTC 59.785 50.000 15.41 15.41 0.00 2.59
152 153 4.141287 CCGATCTGATGGAAGAGACTAGT 58.859 47.826 0.00 0.00 0.00 2.57
153 154 4.141287 ACCGATCTGATGGAAGAGACTAG 58.859 47.826 11.46 0.00 0.00 2.57
154 155 4.138290 GACCGATCTGATGGAAGAGACTA 58.862 47.826 11.46 0.00 0.00 2.59
155 156 2.955660 GACCGATCTGATGGAAGAGACT 59.044 50.000 11.46 0.00 0.00 3.24
156 157 2.955660 AGACCGATCTGATGGAAGAGAC 59.044 50.000 11.46 0.00 32.29 3.36
157 158 3.304911 AGACCGATCTGATGGAAGAGA 57.695 47.619 11.46 0.00 32.29 3.10
158 159 4.399004 AAAGACCGATCTGATGGAAGAG 57.601 45.455 11.46 0.00 34.48 2.85
159 160 4.507710 CAAAAGACCGATCTGATGGAAGA 58.492 43.478 11.46 0.00 34.48 2.87
160 161 3.624861 CCAAAAGACCGATCTGATGGAAG 59.375 47.826 5.34 0.00 34.48 3.46
161 162 3.009033 ACCAAAAGACCGATCTGATGGAA 59.991 43.478 16.17 0.00 34.48 3.53
162 163 2.571653 ACCAAAAGACCGATCTGATGGA 59.428 45.455 16.17 0.00 34.48 3.41
163 164 2.991250 ACCAAAAGACCGATCTGATGG 58.009 47.619 9.14 9.14 34.48 3.51
164 165 3.426695 GCAACCAAAAGACCGATCTGATG 60.427 47.826 0.00 0.00 34.48 3.07
165 166 2.749621 GCAACCAAAAGACCGATCTGAT 59.250 45.455 0.00 0.00 34.48 2.90
166 167 2.151202 GCAACCAAAAGACCGATCTGA 58.849 47.619 0.00 0.00 34.48 3.27
167 168 1.879380 TGCAACCAAAAGACCGATCTG 59.121 47.619 0.00 0.00 34.48 2.90
168 169 2.270352 TGCAACCAAAAGACCGATCT 57.730 45.000 0.00 0.00 36.42 2.75
169 170 3.244976 CAATGCAACCAAAAGACCGATC 58.755 45.455 0.00 0.00 0.00 3.69
170 171 2.029110 CCAATGCAACCAAAAGACCGAT 60.029 45.455 0.00 0.00 0.00 4.18
171 172 1.339610 CCAATGCAACCAAAAGACCGA 59.660 47.619 0.00 0.00 0.00 4.69
172 173 1.782044 CCAATGCAACCAAAAGACCG 58.218 50.000 0.00 0.00 0.00 4.79
173 174 1.202627 TGCCAATGCAACCAAAAGACC 60.203 47.619 0.00 0.00 46.66 3.85
174 175 2.237393 TGCCAATGCAACCAAAAGAC 57.763 45.000 0.00 0.00 46.66 3.01
185 186 2.222007 TGTGTGTTTCTTGCCAATGC 57.778 45.000 0.00 0.00 38.26 3.56
186 187 5.738118 AATTTGTGTGTTTCTTGCCAATG 57.262 34.783 0.00 0.00 0.00 2.82
187 188 9.553064 TTATTAATTTGTGTGTTTCTTGCCAAT 57.447 25.926 0.00 0.00 0.00 3.16
188 189 8.948631 TTATTAATTTGTGTGTTTCTTGCCAA 57.051 26.923 0.00 0.00 0.00 4.52
189 190 8.417106 TCTTATTAATTTGTGTGTTTCTTGCCA 58.583 29.630 0.00 0.00 0.00 4.92
262 263 9.998106 TTAAGCTCTAACTAATGTAATGATCCC 57.002 33.333 0.00 0.00 0.00 3.85
358 359 4.965119 AAAAGGACCGATACATTTGCTC 57.035 40.909 0.00 0.00 0.00 4.26
668 777 0.889994 TTTGATGCTGGTCCATGCAC 59.110 50.000 15.48 11.16 42.26 4.57
671 780 4.987408 TTATGTTTGATGCTGGTCCATG 57.013 40.909 0.00 0.00 0.00 3.66
762 871 3.071892 ACGTCAAGTAAGGGTGAAATGGA 59.928 43.478 0.00 0.00 0.00 3.41
824 933 2.124411 GAGGCCCACATACTTCCCTTA 58.876 52.381 0.00 0.00 0.00 2.69
828 937 1.416772 GTAGGAGGCCCACATACTTCC 59.583 57.143 12.89 5.39 33.88 3.46
871 980 5.447818 CGTGTTGGAAGAAGAAGATATTGCC 60.448 44.000 0.00 0.00 0.00 4.52
945 1054 1.065418 ACTAGATTTGCCCAGGGTTCG 60.065 52.381 7.55 0.00 0.00 3.95
1026 1135 9.325198 GTGAATTGAAAAATACCAATAATCCCC 57.675 33.333 0.00 0.00 33.13 4.81
1087 1196 3.760151 CTGCAAGAAAAGACCATGATGGA 59.240 43.478 20.11 0.00 35.94 3.41
1485 1594 5.431765 AGTTACTGACATGCTAATGGAAGG 58.568 41.667 0.00 0.00 38.19 3.46
1486 1595 6.992063 AAGTTACTGACATGCTAATGGAAG 57.008 37.500 0.00 0.00 38.19 3.46
1670 1807 5.429681 TCTTATCATTTCGTCCAGGGAAA 57.570 39.130 0.00 0.00 37.74 3.13
1690 1827 7.995488 AGGAGTAAATATGTGCTTATTGCTTCT 59.005 33.333 0.00 0.00 43.37 2.85
1941 2085 7.768120 ACAATAACTGTTGCTTTTTCCAAATCA 59.232 29.630 2.69 0.00 32.99 2.57
2081 2225 8.607459 CCTTAGTCAATCATGCTTACAACTAAG 58.393 37.037 19.35 19.35 41.99 2.18
2552 2701 2.010145 TCATAGTTCAGGAAGCACGC 57.990 50.000 0.00 0.00 0.00 5.34
2558 2707 6.857437 TCTCTGTGAATCATAGTTCAGGAA 57.143 37.500 6.89 0.00 38.68 3.36
2635 2784 3.119884 TCACATGCGTTTGTGGATCATTC 60.120 43.478 16.41 0.00 45.63 2.67
2883 3032 0.034186 CCAAGGAGCCCATACAGCAA 60.034 55.000 0.00 0.00 0.00 3.91
3103 3252 7.434307 TCTTGACTAGTTACAACTTTCAGTTCG 59.566 37.037 0.00 0.00 36.03 3.95
3274 3424 7.372260 AGATCTGCAATAGTTGACTAGGAAT 57.628 36.000 0.00 0.00 0.00 3.01
3412 3571 6.099159 TGATGATTGCAAAGAACATTCCAA 57.901 33.333 1.71 0.00 0.00 3.53
3413 3572 5.725325 TGATGATTGCAAAGAACATTCCA 57.275 34.783 1.71 0.79 0.00 3.53
3486 3645 8.519526 TGGTGGTTCATTAATCAACAGTAATTC 58.480 33.333 4.53 0.00 38.52 2.17
3488 3647 7.450014 TGTGGTGGTTCATTAATCAACAGTAAT 59.550 33.333 4.53 0.00 44.04 1.89
3570 3729 0.528249 AAACTTGCTGTTGCCGCTTG 60.528 50.000 0.00 0.00 39.13 4.01
3595 3754 8.661352 TTGAGATAAACTGCATCGAATATTCA 57.339 30.769 15.57 3.51 0.00 2.57
3680 3840 5.622770 CCCCCGAAATGTAATATACTTGC 57.377 43.478 0.00 0.00 0.00 4.01
3700 3860 2.238701 AATGATATCCCCCGCCCCC 61.239 63.158 0.00 0.00 0.00 5.40
3701 3861 1.000896 CAATGATATCCCCCGCCCC 60.001 63.158 0.00 0.00 0.00 5.80
3702 3862 0.112412 AACAATGATATCCCCCGCCC 59.888 55.000 0.00 0.00 0.00 6.13
3703 3863 1.995376 AAACAATGATATCCCCCGCC 58.005 50.000 0.00 0.00 0.00 6.13
3704 3864 6.828785 AGATATAAAACAATGATATCCCCCGC 59.171 38.462 0.00 0.00 34.44 6.13
3705 3865 9.899661 TTAGATATAAAACAATGATATCCCCCG 57.100 33.333 0.00 0.00 34.44 5.73
3714 3874 9.391006 GGTGACTGGTTAGATATAAAACAATGA 57.609 33.333 0.00 0.00 0.00 2.57
3715 3875 9.173021 TGGTGACTGGTTAGATATAAAACAATG 57.827 33.333 2.96 0.00 0.00 2.82
3716 3876 9.747898 TTGGTGACTGGTTAGATATAAAACAAT 57.252 29.630 2.96 0.00 0.00 2.71
3717 3877 9.575868 TTTGGTGACTGGTTAGATATAAAACAA 57.424 29.630 2.96 0.00 0.00 2.83
3718 3878 9.005777 GTTTGGTGACTGGTTAGATATAAAACA 57.994 33.333 2.96 0.00 0.00 2.83
3719 3879 8.456471 GGTTTGGTGACTGGTTAGATATAAAAC 58.544 37.037 0.00 0.00 0.00 2.43
3720 3880 8.164733 TGGTTTGGTGACTGGTTAGATATAAAA 58.835 33.333 0.00 0.00 0.00 1.52
3721 3881 7.691213 TGGTTTGGTGACTGGTTAGATATAAA 58.309 34.615 0.00 0.00 0.00 1.40
3722 3882 7.260387 TGGTTTGGTGACTGGTTAGATATAA 57.740 36.000 0.00 0.00 0.00 0.98
3723 3883 6.877668 TGGTTTGGTGACTGGTTAGATATA 57.122 37.500 0.00 0.00 0.00 0.86
3724 3884 5.772393 TGGTTTGGTGACTGGTTAGATAT 57.228 39.130 0.00 0.00 0.00 1.63
3725 3885 5.072600 ACTTGGTTTGGTGACTGGTTAGATA 59.927 40.000 0.00 0.00 0.00 1.98
3726 3886 4.141251 ACTTGGTTTGGTGACTGGTTAGAT 60.141 41.667 0.00 0.00 0.00 1.98
3727 3887 3.201266 ACTTGGTTTGGTGACTGGTTAGA 59.799 43.478 0.00 0.00 0.00 2.10
3728 3888 3.551846 ACTTGGTTTGGTGACTGGTTAG 58.448 45.455 0.00 0.00 0.00 2.34
3729 3889 3.655615 ACTTGGTTTGGTGACTGGTTA 57.344 42.857 0.00 0.00 0.00 2.85
3730 3890 2.525105 ACTTGGTTTGGTGACTGGTT 57.475 45.000 0.00 0.00 0.00 3.67
3731 3891 2.743838 CGTACTTGGTTTGGTGACTGGT 60.744 50.000 0.00 0.00 0.00 4.00
3732 3892 1.871039 CGTACTTGGTTTGGTGACTGG 59.129 52.381 0.00 0.00 0.00 4.00
3733 3893 2.286833 CACGTACTTGGTTTGGTGACTG 59.713 50.000 0.00 0.00 0.00 3.51
3799 4235 6.100004 TCGTCTAGAAAACCATAGCTGAAAG 58.900 40.000 0.00 0.00 0.00 2.62
3800 4236 6.032956 TCGTCTAGAAAACCATAGCTGAAA 57.967 37.500 0.00 0.00 0.00 2.69
3801 4237 5.654603 TCGTCTAGAAAACCATAGCTGAA 57.345 39.130 0.00 0.00 0.00 3.02
3802 4238 5.654603 TTCGTCTAGAAAACCATAGCTGA 57.345 39.130 0.00 0.00 35.61 4.26
3803 4239 6.313905 ACAATTCGTCTAGAAAACCATAGCTG 59.686 38.462 0.00 0.00 42.91 4.24
3804 4240 6.313905 CACAATTCGTCTAGAAAACCATAGCT 59.686 38.462 0.00 0.00 42.91 3.32
3805 4241 6.478588 CACAATTCGTCTAGAAAACCATAGC 58.521 40.000 0.00 0.00 42.91 2.97
3806 4242 6.092122 TGCACAATTCGTCTAGAAAACCATAG 59.908 38.462 0.00 0.00 42.91 2.23
3807 4243 5.935206 TGCACAATTCGTCTAGAAAACCATA 59.065 36.000 0.00 0.00 42.91 2.74
3808 4244 4.759693 TGCACAATTCGTCTAGAAAACCAT 59.240 37.500 0.00 0.00 42.91 3.55
3809 4245 4.130857 TGCACAATTCGTCTAGAAAACCA 58.869 39.130 0.00 0.00 42.91 3.67
3810 4246 4.742438 TGCACAATTCGTCTAGAAAACC 57.258 40.909 0.00 0.00 42.91 3.27
3811 4247 6.398935 GCAATTGCACAATTCGTCTAGAAAAC 60.399 38.462 25.36 0.00 40.79 2.43
3812 4248 5.629020 GCAATTGCACAATTCGTCTAGAAAA 59.371 36.000 25.36 0.00 40.79 2.29
3813 4249 5.048782 AGCAATTGCACAATTCGTCTAGAAA 60.049 36.000 30.89 0.00 42.41 2.52
3814 4250 4.455533 AGCAATTGCACAATTCGTCTAGAA 59.544 37.500 30.89 0.00 45.16 2.10
3815 4251 4.002982 AGCAATTGCACAATTCGTCTAGA 58.997 39.130 30.89 0.00 45.16 2.43
3816 4252 4.346734 AGCAATTGCACAATTCGTCTAG 57.653 40.909 30.89 0.00 45.16 2.43
3817 4253 4.764679 AAGCAATTGCACAATTCGTCTA 57.235 36.364 30.89 0.00 45.16 2.59
3818 4254 3.648339 AAGCAATTGCACAATTCGTCT 57.352 38.095 30.89 4.40 45.16 4.18
3819 4255 5.174761 TGTTAAAGCAATTGCACAATTCGTC 59.825 36.000 30.89 12.50 45.16 4.20
3820 4256 5.046529 TGTTAAAGCAATTGCACAATTCGT 58.953 33.333 30.89 5.95 45.16 3.85
3821 4257 5.573296 TGTTAAAGCAATTGCACAATTCG 57.427 34.783 30.89 4.03 45.16 3.34
3838 4274 9.010029 CCCTTTTTCAGTATTAGAAGCTGTTAA 57.990 33.333 0.00 0.00 0.00 2.01
3839 4275 8.161425 ACCCTTTTTCAGTATTAGAAGCTGTTA 58.839 33.333 0.00 0.00 0.00 2.41
3840 4276 7.004691 ACCCTTTTTCAGTATTAGAAGCTGTT 58.995 34.615 0.00 0.00 0.00 3.16
3841 4277 6.543735 ACCCTTTTTCAGTATTAGAAGCTGT 58.456 36.000 0.00 0.00 0.00 4.40
3842 4278 7.454260 AACCCTTTTTCAGTATTAGAAGCTG 57.546 36.000 0.00 0.00 0.00 4.24
3843 4279 7.176865 GGAAACCCTTTTTCAGTATTAGAAGCT 59.823 37.037 0.00 0.00 0.00 3.74
3844 4280 7.313646 GGAAACCCTTTTTCAGTATTAGAAGC 58.686 38.462 0.00 0.00 0.00 3.86
3905 4341 9.263446 ACTTGGTTTGGTGACTAGTTAGATATA 57.737 33.333 0.00 0.00 0.00 0.86
3906 4342 8.147244 ACTTGGTTTGGTGACTAGTTAGATAT 57.853 34.615 0.00 0.00 0.00 1.63
3907 4343 7.549147 ACTTGGTTTGGTGACTAGTTAGATA 57.451 36.000 0.00 0.00 0.00 1.98
3908 4344 6.435292 ACTTGGTTTGGTGACTAGTTAGAT 57.565 37.500 0.00 0.00 0.00 1.98
3909 4345 5.881923 ACTTGGTTTGGTGACTAGTTAGA 57.118 39.130 0.00 0.00 0.00 2.10
3910 4346 5.632347 CGTACTTGGTTTGGTGACTAGTTAG 59.368 44.000 0.00 0.00 0.00 2.34
3911 4347 5.068987 ACGTACTTGGTTTGGTGACTAGTTA 59.931 40.000 0.00 0.00 0.00 2.24
3912 4348 4.141869 ACGTACTTGGTTTGGTGACTAGTT 60.142 41.667 0.00 0.00 0.00 2.24
3913 4349 3.385755 ACGTACTTGGTTTGGTGACTAGT 59.614 43.478 0.00 0.00 0.00 2.57
3914 4350 3.739300 CACGTACTTGGTTTGGTGACTAG 59.261 47.826 0.00 0.00 0.00 2.57
3915 4351 3.384146 TCACGTACTTGGTTTGGTGACTA 59.616 43.478 0.00 0.00 30.20 2.59
3916 4352 2.168936 TCACGTACTTGGTTTGGTGACT 59.831 45.455 0.00 0.00 30.20 3.41
3917 4353 2.553086 TCACGTACTTGGTTTGGTGAC 58.447 47.619 0.00 0.00 30.20 3.67
3918 4354 2.983907 TCACGTACTTGGTTTGGTGA 57.016 45.000 0.00 0.00 32.51 4.02
3919 4355 3.135225 TGATCACGTACTTGGTTTGGTG 58.865 45.455 0.00 0.00 0.00 4.17
3920 4356 3.478857 TGATCACGTACTTGGTTTGGT 57.521 42.857 0.00 0.00 0.00 3.67
3921 4357 6.677781 AATATGATCACGTACTTGGTTTGG 57.322 37.500 0.00 0.00 0.00 3.28
3922 4358 8.642908 TCTAATATGATCACGTACTTGGTTTG 57.357 34.615 0.00 0.00 0.00 2.93
3923 4359 9.477484 GATCTAATATGATCACGTACTTGGTTT 57.523 33.333 0.00 0.00 41.65 3.27
3924 4360 7.808381 CGATCTAATATGATCACGTACTTGGTT 59.192 37.037 0.00 0.00 42.01 3.67
3925 4361 7.040617 ACGATCTAATATGATCACGTACTTGGT 60.041 37.037 0.00 0.00 42.01 3.67
3926 4362 7.306213 ACGATCTAATATGATCACGTACTTGG 58.694 38.462 0.00 0.00 42.01 3.61
3927 4363 8.729529 AACGATCTAATATGATCACGTACTTG 57.270 34.615 0.00 0.00 42.01 3.16
3928 4364 8.565416 TGAACGATCTAATATGATCACGTACTT 58.435 33.333 0.00 0.00 42.01 2.24
3929 4365 8.095937 TGAACGATCTAATATGATCACGTACT 57.904 34.615 0.00 0.00 42.01 2.73
3930 4366 8.723777 TTGAACGATCTAATATGATCACGTAC 57.276 34.615 0.00 0.00 42.01 3.67
3931 4367 9.738832 TTTTGAACGATCTAATATGATCACGTA 57.261 29.630 0.00 0.00 42.01 3.57
3932 4368 8.642908 TTTTGAACGATCTAATATGATCACGT 57.357 30.769 0.00 0.00 42.01 4.49
3933 4369 7.737744 GCTTTTGAACGATCTAATATGATCACG 59.262 37.037 0.00 0.00 42.01 4.35
3934 4370 8.012241 GGCTTTTGAACGATCTAATATGATCAC 58.988 37.037 0.00 0.00 42.01 3.06
3935 4371 7.714813 TGGCTTTTGAACGATCTAATATGATCA 59.285 33.333 0.00 0.00 42.01 2.92
3936 4372 8.087982 TGGCTTTTGAACGATCTAATATGATC 57.912 34.615 0.00 0.00 39.40 2.92
3937 4373 7.933577 TCTGGCTTTTGAACGATCTAATATGAT 59.066 33.333 0.00 0.00 0.00 2.45
3938 4374 7.272244 TCTGGCTTTTGAACGATCTAATATGA 58.728 34.615 0.00 0.00 0.00 2.15
3939 4375 7.482654 TCTGGCTTTTGAACGATCTAATATG 57.517 36.000 0.00 0.00 0.00 1.78
3940 4376 7.012421 GGTTCTGGCTTTTGAACGATCTAATAT 59.988 37.037 0.00 0.00 42.28 1.28
3941 4377 6.315393 GGTTCTGGCTTTTGAACGATCTAATA 59.685 38.462 0.00 0.00 42.28 0.98
3942 4378 5.123979 GGTTCTGGCTTTTGAACGATCTAAT 59.876 40.000 0.00 0.00 42.28 1.73
3943 4379 4.454504 GGTTCTGGCTTTTGAACGATCTAA 59.545 41.667 0.00 0.00 42.28 2.10
3944 4380 4.000988 GGTTCTGGCTTTTGAACGATCTA 58.999 43.478 0.00 0.00 42.28 1.98
3945 4381 2.814336 GGTTCTGGCTTTTGAACGATCT 59.186 45.455 0.00 0.00 42.28 2.75
3946 4382 2.814336 AGGTTCTGGCTTTTGAACGATC 59.186 45.455 0.00 0.00 42.28 3.69
3947 4383 2.863809 AGGTTCTGGCTTTTGAACGAT 58.136 42.857 0.00 0.00 42.28 3.73
3948 4384 2.341846 AGGTTCTGGCTTTTGAACGA 57.658 45.000 0.00 0.00 42.28 3.85
3949 4385 3.058224 CCTAAGGTTCTGGCTTTTGAACG 60.058 47.826 0.00 0.00 42.28 3.95
3950 4386 4.142038 TCCTAAGGTTCTGGCTTTTGAAC 58.858 43.478 0.00 0.00 41.08 3.18
3951 4387 4.447138 TCCTAAGGTTCTGGCTTTTGAA 57.553 40.909 0.00 0.00 0.00 2.69
3952 4388 4.042809 TGATCCTAAGGTTCTGGCTTTTGA 59.957 41.667 0.00 0.00 0.00 2.69
3953 4389 4.335416 TGATCCTAAGGTTCTGGCTTTTG 58.665 43.478 0.00 0.00 0.00 2.44
3954 4390 4.568592 CCTGATCCTAAGGTTCTGGCTTTT 60.569 45.833 0.00 0.00 35.07 2.27
3955 4391 3.054065 CCTGATCCTAAGGTTCTGGCTTT 60.054 47.826 0.00 0.00 35.07 3.51
3956 4392 2.507471 CCTGATCCTAAGGTTCTGGCTT 59.493 50.000 0.00 0.00 35.07 4.35
3957 4393 2.122768 CCTGATCCTAAGGTTCTGGCT 58.877 52.381 0.00 0.00 35.07 4.75
3958 4394 2.119495 TCCTGATCCTAAGGTTCTGGC 58.881 52.381 0.00 0.00 39.11 4.85
3959 4395 3.118223 GGTTCCTGATCCTAAGGTTCTGG 60.118 52.174 0.00 0.00 39.98 3.86
3960 4396 3.777522 AGGTTCCTGATCCTAAGGTTCTG 59.222 47.826 0.00 0.00 36.14 3.02
3961 4397 4.081695 AGGTTCCTGATCCTAAGGTTCT 57.918 45.455 0.00 0.00 36.14 3.01
3962 4398 4.101274 GGTAGGTTCCTGATCCTAAGGTTC 59.899 50.000 5.72 0.00 37.94 3.62
3963 4399 4.038633 GGTAGGTTCCTGATCCTAAGGTT 58.961 47.826 5.72 0.00 37.94 3.50
3964 4400 3.013648 TGGTAGGTTCCTGATCCTAAGGT 59.986 47.826 5.72 0.00 37.94 3.50
3965 4401 3.654273 TGGTAGGTTCCTGATCCTAAGG 58.346 50.000 5.72 0.00 37.94 2.69
4048 4484 3.648339 AAGCAATTGCACAATTCGTCT 57.352 38.095 30.89 4.40 45.16 4.18
4108 4544 9.772973 ACTCGGTGATGTTTGCTTTATAATATA 57.227 29.630 0.00 0.00 0.00 0.86
4109 4545 8.677148 ACTCGGTGATGTTTGCTTTATAATAT 57.323 30.769 0.00 0.00 0.00 1.28
4110 4546 9.037737 GTACTCGGTGATGTTTGCTTTATAATA 57.962 33.333 0.00 0.00 0.00 0.98
4111 4547 7.551262 TGTACTCGGTGATGTTTGCTTTATAAT 59.449 33.333 0.00 0.00 0.00 1.28
4112 4548 6.874664 TGTACTCGGTGATGTTTGCTTTATAA 59.125 34.615 0.00 0.00 0.00 0.98
4113 4549 6.399743 TGTACTCGGTGATGTTTGCTTTATA 58.600 36.000 0.00 0.00 0.00 0.98
4114 4550 5.242434 TGTACTCGGTGATGTTTGCTTTAT 58.758 37.500 0.00 0.00 0.00 1.40
4115 4551 4.633175 TGTACTCGGTGATGTTTGCTTTA 58.367 39.130 0.00 0.00 0.00 1.85
4116 4552 3.472652 TGTACTCGGTGATGTTTGCTTT 58.527 40.909 0.00 0.00 0.00 3.51
4117 4553 3.120321 TGTACTCGGTGATGTTTGCTT 57.880 42.857 0.00 0.00 0.00 3.91
4118 4554 2.831685 TGTACTCGGTGATGTTTGCT 57.168 45.000 0.00 0.00 0.00 3.91
4119 4555 3.483574 CGAATGTACTCGGTGATGTTTGC 60.484 47.826 0.00 0.00 35.14 3.68
4120 4556 3.924073 TCGAATGTACTCGGTGATGTTTG 59.076 43.478 4.87 0.00 39.35 2.93
4121 4557 4.082408 TCTCGAATGTACTCGGTGATGTTT 60.082 41.667 4.87 0.00 39.35 2.83
4122 4558 3.442625 TCTCGAATGTACTCGGTGATGTT 59.557 43.478 4.87 0.00 39.35 2.71
4123 4559 3.014623 TCTCGAATGTACTCGGTGATGT 58.985 45.455 4.87 0.00 39.35 3.06
4124 4560 3.692791 TCTCGAATGTACTCGGTGATG 57.307 47.619 4.87 0.00 39.35 3.07
4125 4561 4.215827 GGTATCTCGAATGTACTCGGTGAT 59.784 45.833 4.87 10.28 39.35 3.06
4126 4562 3.562973 GGTATCTCGAATGTACTCGGTGA 59.437 47.826 4.87 4.72 39.35 4.02
4127 4563 3.606384 CGGTATCTCGAATGTACTCGGTG 60.606 52.174 4.87 0.04 39.35 4.94
4128 4564 2.547211 CGGTATCTCGAATGTACTCGGT 59.453 50.000 4.87 0.00 39.35 4.69
4129 4565 2.804527 TCGGTATCTCGAATGTACTCGG 59.195 50.000 4.87 0.00 39.35 4.63
4130 4566 4.463515 TTCGGTATCTCGAATGTACTCG 57.536 45.455 0.00 0.00 43.12 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.