Multiple sequence alignment - TraesCS1D01G125200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G125200 chr1D 100.000 8627 0 0 731 9357 132861994 132853368 0.000000e+00 15932.0
1 TraesCS1D01G125200 chr1D 100.000 329 0 0 1 329 132862724 132862396 8.030000e-170 608.0
2 TraesCS1D01G125200 chr1D 90.783 217 9 4 4246 4451 854373 854589 7.160000e-71 279.0
3 TraesCS1D01G125200 chr1D 83.660 153 18 3 5021 5169 162062516 162062367 4.560000e-28 137.0
4 TraesCS1D01G125200 chr1D 90.722 97 6 2 4796 4889 245893794 245893698 9.860000e-25 126.0
5 TraesCS1D01G125200 chr1A 95.980 2537 77 7 5055 7572 166318839 166321369 0.000000e+00 4096.0
6 TraesCS1D01G125200 chr1A 94.014 2389 81 25 732 3108 166315453 166317791 0.000000e+00 3563.0
7 TraesCS1D01G125200 chr1A 96.147 1064 29 6 7512 8573 166321369 166322422 0.000000e+00 1727.0
8 TraesCS1D01G125200 chr1A 88.547 585 26 11 4248 4814 281365750 281365189 0.000000e+00 671.0
9 TraesCS1D01G125200 chr1A 89.196 398 18 12 3189 3575 166318085 166318468 3.060000e-129 473.0
10 TraesCS1D01G125200 chr1A 84.665 463 46 16 8738 9189 166322434 166322882 1.120000e-118 438.0
11 TraesCS1D01G125200 chr1A 87.748 302 20 2 3499 3783 166318423 166318724 4.190000e-88 337.0
12 TraesCS1D01G125200 chr1A 93.013 229 15 1 3873 4100 281366488 281366260 5.420000e-87 333.0
13 TraesCS1D01G125200 chr1A 81.048 248 36 7 9114 9356 166322737 166322978 4.460000e-43 187.0
14 TraesCS1D01G125200 chr1A 87.692 130 12 2 5044 5169 222350469 222350598 2.110000e-31 148.0
15 TraesCS1D01G125200 chr1A 96.875 32 1 0 8588 8619 166322410 166322441 5.000000e-03 54.7
16 TraesCS1D01G125200 chr1B 96.189 2309 42 9 6281 8573 204407422 204405144 0.000000e+00 3735.0
17 TraesCS1D01G125200 chr1B 96.910 1327 37 1 4965 6287 204410156 204408830 0.000000e+00 2220.0
18 TraesCS1D01G125200 chr1B 95.206 1335 44 6 732 2062 204413501 204412183 0.000000e+00 2093.0
19 TraesCS1D01G125200 chr1B 95.218 941 19 10 2107 3047 204412190 204411276 0.000000e+00 1465.0
20 TraesCS1D01G125200 chr1B 95.929 737 18 4 3148 3873 204411098 204410363 0.000000e+00 1184.0
21 TraesCS1D01G125200 chr1B 94.400 500 21 4 4308 4800 535527125 535527624 0.000000e+00 761.0
22 TraesCS1D01G125200 chr1B 95.937 443 18 0 3872 4314 535526565 535527007 0.000000e+00 719.0
23 TraesCS1D01G125200 chr1B 89.362 329 26 8 1 329 622357966 622358285 1.130000e-108 405.0
24 TraesCS1D01G125200 chr1B 92.527 281 12 6 8738 9014 204405132 204404857 2.450000e-105 394.0
25 TraesCS1D01G125200 chr1B 88.146 329 30 8 1 329 622312326 622312645 5.300000e-102 383.0
26 TraesCS1D01G125200 chr1B 96.000 225 9 0 4877 5101 204410381 204410157 5.340000e-97 366.0
27 TraesCS1D01G125200 chr1B 87.952 249 24 4 9114 9357 204404793 204404546 1.190000e-73 289.0
28 TraesCS1D01G125200 chr1B 88.636 220 21 4 2580 2795 147110023 147109804 2.000000e-66 265.0
29 TraesCS1D01G125200 chr1B 90.991 111 4 2 4136 4245 38887012 38886907 2.720000e-30 145.0
30 TraesCS1D01G125200 chr1B 87.302 126 6 3 3754 3869 332136281 332136156 1.640000e-27 135.0
31 TraesCS1D01G125200 chr1B 88.288 111 13 0 5057 5167 656376181 656376071 5.890000e-27 134.0
32 TraesCS1D01G125200 chr1B 94.253 87 3 2 3785 3869 48266394 48266480 2.120000e-26 132.0
33 TraesCS1D01G125200 chr1B 91.489 94 8 0 9020 9113 204404821 204404728 7.630000e-26 130.0
34 TraesCS1D01G125200 chr1B 94.444 54 3 0 3045 3098 204411151 204411098 6.020000e-12 84.2
35 TraesCS1D01G125200 chr1B 100.000 29 0 0 8591 8619 204405153 204405125 5.000000e-03 54.7
36 TraesCS1D01G125200 chr2A 95.634 939 29 2 3873 4800 103136384 103137321 0.000000e+00 1496.0
37 TraesCS1D01G125200 chr2A 95.556 135 5 1 8616 8750 638330265 638330132 2.050000e-51 215.0
38 TraesCS1D01G125200 chr2A 91.150 113 10 0 5057 5169 270466947 270467059 4.520000e-33 154.0
39 TraesCS1D01G125200 chr2A 92.553 94 6 1 3331 3423 451810574 451810667 5.890000e-27 134.0
40 TraesCS1D01G125200 chr2A 88.542 96 11 0 3665 3760 451811076 451811171 5.940000e-22 117.0
41 TraesCS1D01G125200 chr2A 77.914 163 15 10 3493 3636 451810911 451811071 2.170000e-11 82.4
42 TraesCS1D01G125200 chr5B 83.944 1364 160 39 5735 7071 448299019 448297688 0.000000e+00 1251.0
43 TraesCS1D01G125200 chr5B 80.776 1212 163 33 5369 6567 448284923 448283769 0.000000e+00 883.0
44 TraesCS1D01G125200 chr5B 80.946 761 81 29 7769 8497 448279630 448278902 2.300000e-150 544.0
45 TraesCS1D01G125200 chr5B 84.114 598 53 25 7985 8568 448297681 448297112 2.970000e-149 540.0
46 TraesCS1D01G125200 chr5B 94.118 136 7 1 8615 8750 421613261 421613395 1.230000e-48 206.0
47 TraesCS1D01G125200 chr5B 90.217 92 9 0 8758 8849 448278787 448278696 4.590000e-23 121.0
48 TraesCS1D01G125200 chr5D 82.844 1329 174 29 5749 7064 375413655 375412368 0.000000e+00 1142.0
49 TraesCS1D01G125200 chr5D 83.725 1106 120 33 5464 6535 375450050 375448971 0.000000e+00 990.0
50 TraesCS1D01G125200 chr5D 83.562 584 60 23 7985 8560 375440738 375440183 1.800000e-141 514.0
51 TraesCS1D01G125200 chr5D 83.303 557 79 12 6526 7071 375441298 375440745 1.400000e-137 501.0
52 TraesCS1D01G125200 chr5D 91.743 327 26 1 3 329 168636947 168636622 3.980000e-123 453.0
53 TraesCS1D01G125200 chr5D 85.039 381 53 3 7769 8149 375411765 375411389 1.470000e-102 385.0
54 TraesCS1D01G125200 chr5D 84.153 183 13 9 8323 8496 375411242 375411067 7.520000e-36 163.0
55 TraesCS1D01G125200 chr5D 91.509 106 9 0 8232 8337 375411363 375411258 7.570000e-31 147.0
56 TraesCS1D01G125200 chr5D 92.632 95 5 1 4806 4898 197147099 197147193 1.640000e-27 135.0
57 TraesCS1D01G125200 chr5D 94.118 85 3 1 4806 4888 188826535 188826619 2.740000e-25 128.0
58 TraesCS1D01G125200 chr5D 86.667 90 12 0 9016 9105 267081718 267081807 5.980000e-17 100.0
59 TraesCS1D01G125200 chr5D 90.000 70 6 1 8753 8821 375410954 375410885 1.290000e-13 89.8
60 TraesCS1D01G125200 chr7D 95.200 625 18 2 4186 4799 364551014 364550391 0.000000e+00 977.0
61 TraesCS1D01G125200 chr7D 93.846 325 19 1 1 324 618329783 618329459 1.090000e-133 488.0
62 TraesCS1D01G125200 chr7D 93.009 329 13 2 3872 4199 364551949 364551630 1.100000e-128 472.0
63 TraesCS1D01G125200 chr7D 91.212 330 27 2 1 329 91566196 91565868 1.850000e-121 448.0
64 TraesCS1D01G125200 chr7D 93.258 89 5 1 3785 3872 628411014 628410926 7.630000e-26 130.0
65 TraesCS1D01G125200 chr7D 91.579 95 5 3 3785 3877 75937507 75937414 2.740000e-25 128.0
66 TraesCS1D01G125200 chr7B 94.709 567 18 5 3873 4427 162323591 162324157 0.000000e+00 870.0
67 TraesCS1D01G125200 chr7B 95.224 335 8 4 4445 4772 162330162 162330495 2.990000e-144 523.0
68 TraesCS1D01G125200 chr7B 92.179 179 11 2 4890 5065 464546937 464547115 5.610000e-62 250.0
69 TraesCS1D01G125200 chr7B 95.455 132 6 0 8616 8747 126893247 126893116 2.650000e-50 211.0
70 TraesCS1D01G125200 chr7B 89.381 113 12 0 5057 5169 199757873 199757985 9.790000e-30 143.0
71 TraesCS1D01G125200 chr3D 87.246 737 29 12 4118 4798 79599116 79599843 0.000000e+00 780.0
72 TraesCS1D01G125200 chr3D 91.489 329 28 0 1 329 348273044 348272716 3.980000e-123 453.0
73 TraesCS1D01G125200 chr3D 94.141 256 12 2 3872 4124 79598389 79598644 4.100000e-103 387.0
74 TraesCS1D01G125200 chr3D 96.250 160 6 0 4894 5053 187836469 187836310 7.210000e-66 263.0
75 TraesCS1D01G125200 chr3D 88.235 221 22 3 2580 2796 386221303 386221083 2.590000e-65 261.0
76 TraesCS1D01G125200 chr3D 78.638 426 64 20 6432 6845 135734332 135734742 3.350000e-64 257.0
77 TraesCS1D01G125200 chr3D 84.314 102 12 2 9016 9113 5509684 5509583 7.730000e-16 97.1
78 TraesCS1D01G125200 chr5A 81.170 940 132 23 6028 6965 476757660 476756764 0.000000e+00 713.0
79 TraesCS1D01G125200 chr5A 89.440 464 42 6 4342 4801 528833823 528834283 6.300000e-161 579.0
80 TraesCS1D01G125200 chr5A 92.952 227 16 0 3873 4099 528826535 528826761 1.950000e-86 331.0
81 TraesCS1D01G125200 chr5A 82.353 357 34 17 7981 8336 476755579 476755251 5.530000e-72 283.0
82 TraesCS1D01G125200 chr5A 95.266 169 8 0 4894 5062 320214405 320214237 1.550000e-67 268.0
83 TraesCS1D01G125200 chr5A 87.069 116 4 4 4242 4346 528827270 528827385 4.590000e-23 121.0
84 TraesCS1D01G125200 chr5A 95.385 65 3 0 4182 4246 528827183 528827247 4.620000e-18 104.0
85 TraesCS1D01G125200 chr5A 86.517 89 12 0 9017 9105 626266775 626266863 2.150000e-16 99.0
86 TraesCS1D01G125200 chr5A 84.536 97 15 0 9017 9113 204344881 204344977 7.730000e-16 97.1
87 TraesCS1D01G125200 chr5A 94.643 56 3 0 8323 8378 476755234 476755179 4.650000e-13 87.9
88 TraesCS1D01G125200 chr5A 82.178 101 16 2 3322 3420 575930000 575930100 1.670000e-12 86.1
89 TraesCS1D01G125200 chr5A 82.500 80 14 0 9221 9300 337314206 337314127 4.690000e-08 71.3
90 TraesCS1D01G125200 chr3A 87.141 661 43 7 4182 4801 597119342 597118683 0.000000e+00 712.0
91 TraesCS1D01G125200 chr3A 96.460 226 8 0 3874 4099 597119990 597119765 3.190000e-99 374.0
92 TraesCS1D01G125200 chr3A 78.873 426 63 21 6432 6845 151317015 151317425 7.210000e-66 263.0
93 TraesCS1D01G125200 chr3A 94.245 139 8 0 8608 8746 736073165 736073303 7.360000e-51 213.0
94 TraesCS1D01G125200 chr3A 94.505 91 2 2 4801 4889 507291578 507291489 4.560000e-28 137.0
95 TraesCS1D01G125200 chr3A 91.489 94 6 1 4806 4897 507291490 507291583 2.740000e-25 128.0
96 TraesCS1D01G125200 chr3A 84.314 102 12 3 9016 9113 519234741 519234640 7.730000e-16 97.1
97 TraesCS1D01G125200 chr3A 90.476 63 6 0 3685 3747 144157336 144157274 6.020000e-12 84.2
98 TraesCS1D01G125200 chr6A 88.660 582 36 11 4241 4803 381029798 381029228 0.000000e+00 682.0
99 TraesCS1D01G125200 chr6A 92.222 90 5 1 4801 4888 607845423 607845512 9.860000e-25 126.0
100 TraesCS1D01G125200 chr4B 90.204 490 31 8 4248 4720 88379899 88379410 2.870000e-174 623.0
101 TraesCS1D01G125200 chr4B 88.636 220 21 3 2580 2795 258762551 258762332 2.000000e-66 265.0
102 TraesCS1D01G125200 chr4B 77.696 408 68 17 6448 6845 17355905 17356299 2.630000e-55 228.0
103 TraesCS1D01G125200 chr4B 91.339 127 10 1 8616 8742 85730856 85730981 1.250000e-38 172.0
104 TraesCS1D01G125200 chr4B 93.478 92 4 2 3785 3874 27399452 27399543 1.640000e-27 135.0
105 TraesCS1D01G125200 chr4B 98.462 65 1 0 4182 4246 88380085 88380021 2.140000e-21 115.0
106 TraesCS1D01G125200 chr3B 92.073 328 26 0 1 328 710395343 710395016 6.620000e-126 462.0
107 TraesCS1D01G125200 chr3B 76.296 540 101 20 6432 6959 193960372 193960896 7.210000e-66 263.0
108 TraesCS1D01G125200 chr3B 94.326 141 8 0 8607 8747 506168313 506168453 5.690000e-52 217.0
109 TraesCS1D01G125200 chr3B 95.238 84 3 1 3785 3867 309414772 309414855 2.120000e-26 132.0
110 TraesCS1D01G125200 chr3B 92.391 92 5 1 4799 4888 486386621 486386712 7.630000e-26 130.0
111 TraesCS1D01G125200 chr2D 91.793 329 27 0 1 329 646431404 646431732 8.560000e-125 459.0
112 TraesCS1D01G125200 chr2D 86.651 427 14 8 4118 4509 306769723 306769305 5.190000e-117 433.0
113 TraesCS1D01G125200 chr2D 89.404 302 26 5 4505 4801 306767612 306767312 8.870000e-100 375.0
114 TraesCS1D01G125200 chr2D 93.617 235 13 1 3874 4108 306770480 306770248 5.380000e-92 350.0
115 TraesCS1D01G125200 chr2D 88.128 219 23 3 2580 2795 507196051 507196269 3.350000e-64 257.0
116 TraesCS1D01G125200 chr2D 93.642 173 8 3 4886 5058 296364043 296364212 1.210000e-63 255.0
117 TraesCS1D01G125200 chr2D 91.837 147 10 1 8601 8747 20689718 20689862 4.430000e-48 204.0
118 TraesCS1D01G125200 chr2D 90.598 117 10 1 5053 5169 238158289 238158404 4.520000e-33 154.0
119 TraesCS1D01G125200 chr2D 95.349 86 2 1 4806 4889 512165840 512165925 1.640000e-27 135.0
120 TraesCS1D01G125200 chr2D 88.660 97 11 0 3665 3761 342100337 342100433 1.650000e-22 119.0
121 TraesCS1D01G125200 chr6B 90.274 329 30 1 1 329 506550714 506551040 6.710000e-116 429.0
122 TraesCS1D01G125200 chr6B 95.455 132 6 0 8616 8747 207510901 207511032 2.650000e-50 211.0
123 TraesCS1D01G125200 chr6B 91.111 90 8 0 9016 9105 350014265 350014176 1.280000e-23 122.0
124 TraesCS1D01G125200 chr2B 92.105 228 18 0 3872 4099 253270047 253270274 1.170000e-83 322.0
125 TraesCS1D01G125200 chr2B 94.578 166 8 1 4893 5058 366017680 366017516 1.210000e-63 255.0
126 TraesCS1D01G125200 chr2B 91.216 148 12 1 8598 8744 549559405 549559552 5.730000e-47 200.0
127 TraesCS1D01G125200 chr2B 89.381 113 12 0 5057 5169 297436501 297436613 9.790000e-30 143.0
128 TraesCS1D01G125200 chr2B 87.629 97 12 0 3665 3761 407236910 407237006 7.680000e-21 113.0
129 TraesCS1D01G125200 chr2B 95.161 62 3 0 4118 4179 253270796 253270857 2.150000e-16 99.0
130 TraesCS1D01G125200 chr2B 92.754 69 4 1 3568 3636 407236838 407236905 2.150000e-16 99.0
131 TraesCS1D01G125200 chr7A 88.636 220 21 3 2580 2795 442273814 442273595 2.000000e-66 265.0
132 TraesCS1D01G125200 chr7A 95.679 162 7 0 4892 5053 494786827 494786988 2.590000e-65 261.0
133 TraesCS1D01G125200 chr7A 81.293 294 45 6 2512 2795 472930705 472930998 7.310000e-56 230.0
134 TraesCS1D01G125200 chr7A 91.667 84 7 0 3677 3760 365081191 365081274 5.940000e-22 117.0
135 TraesCS1D01G125200 chr7A 84.536 97 15 0 9017 9113 373864744 373864840 7.730000e-16 97.1
136 TraesCS1D01G125200 chr7A 86.076 79 11 0 6767 6845 364005718 364005796 1.670000e-12 86.1
137 TraesCS1D01G125200 chr7A 85.526 76 11 0 9114 9189 167815326 167815401 7.790000e-11 80.5
138 TraesCS1D01G125200 chr7A 89.130 46 5 0 9144 9189 576144430 576144475 3.650000e-04 58.4
139 TraesCS1D01G125200 chr4A 88.288 222 20 4 2580 2795 182894174 182894395 2.590000e-65 261.0
140 TraesCS1D01G125200 chr4A 93.407 91 3 3 3785 3872 38745277 38745367 2.120000e-26 132.0
141 TraesCS1D01G125200 chr4A 86.813 91 12 0 3665 3755 405572270 405572360 1.660000e-17 102.0
142 TraesCS1D01G125200 chr4D 95.000 160 8 0 4894 5053 334164552 334164393 1.560000e-62 252.0
143 TraesCS1D01G125200 chr4D 94.118 136 7 1 8612 8747 23352595 23352729 1.230000e-48 206.0
144 TraesCS1D01G125200 chr4D 84.800 125 14 4 3751 3870 461277439 461277563 4.590000e-23 121.0
145 TraesCS1D01G125200 chr4D 87.912 91 11 0 3665 3755 190479905 190479995 3.570000e-19 108.0
146 TraesCS1D01G125200 chr6D 94.186 86 3 1 4806 4889 142148799 142148714 7.630000e-26 130.0
147 TraesCS1D01G125200 chrUn 85.714 98 14 0 9016 9113 92737504 92737601 4.620000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G125200 chr1D 132853368 132862724 9356 True 8270.000000 15932 100.000000 1 9357 2 chr1D.!!$R3 9356
1 TraesCS1D01G125200 chr1A 166315453 166322978 7525 False 1359.462500 4096 90.709125 732 9356 8 chr1A.!!$F2 8624
2 TraesCS1D01G125200 chr1A 281365189 281366488 1299 True 502.000000 671 90.780000 3873 4814 2 chr1A.!!$R1 941
3 TraesCS1D01G125200 chr1B 204404546 204413501 8955 True 1092.263636 3735 94.714909 732 9357 11 chr1B.!!$R5 8625
4 TraesCS1D01G125200 chr1B 535526565 535527624 1059 False 740.000000 761 95.168500 3872 4800 2 chr1B.!!$F4 928
5 TraesCS1D01G125200 chr2A 103136384 103137321 937 False 1496.000000 1496 95.634000 3873 4800 1 chr2A.!!$F1 927
6 TraesCS1D01G125200 chr5B 448297112 448299019 1907 True 895.500000 1251 84.029000 5735 8568 2 chr5B.!!$R3 2833
7 TraesCS1D01G125200 chr5B 448283769 448284923 1154 True 883.000000 883 80.776000 5369 6567 1 chr5B.!!$R1 1198
8 TraesCS1D01G125200 chr5B 448278696 448279630 934 True 332.500000 544 85.581500 7769 8849 2 chr5B.!!$R2 1080
9 TraesCS1D01G125200 chr5D 375448971 375450050 1079 True 990.000000 990 83.725000 5464 6535 1 chr5D.!!$R2 1071
10 TraesCS1D01G125200 chr5D 375440183 375441298 1115 True 507.500000 514 83.432500 6526 8560 2 chr5D.!!$R4 2034
11 TraesCS1D01G125200 chr5D 375410885 375413655 2770 True 385.360000 1142 86.709000 5749 8821 5 chr5D.!!$R3 3072
12 TraesCS1D01G125200 chr7D 364550391 364551949 1558 True 724.500000 977 94.104500 3872 4799 2 chr7D.!!$R5 927
13 TraesCS1D01G125200 chr7B 162323591 162324157 566 False 870.000000 870 94.709000 3873 4427 1 chr7B.!!$F1 554
14 TraesCS1D01G125200 chr3D 79598389 79599843 1454 False 583.500000 780 90.693500 3872 4798 2 chr3D.!!$F2 926
15 TraesCS1D01G125200 chr5A 476755179 476757660 2481 True 361.300000 713 86.055333 6028 8378 3 chr5A.!!$R3 2350
16 TraesCS1D01G125200 chr3A 597118683 597119990 1307 True 543.000000 712 91.800500 3874 4801 2 chr3A.!!$R4 927
17 TraesCS1D01G125200 chr6A 381029228 381029798 570 True 682.000000 682 88.660000 4241 4803 1 chr6A.!!$R1 562
18 TraesCS1D01G125200 chr4B 88379410 88380085 675 True 369.000000 623 94.333000 4182 4720 2 chr4B.!!$R2 538
19 TraesCS1D01G125200 chr3B 193960372 193960896 524 False 263.000000 263 76.296000 6432 6959 1 chr3B.!!$F1 527
20 TraesCS1D01G125200 chr2D 306767312 306770480 3168 True 386.000000 433 89.890667 3874 4801 3 chr2D.!!$R1 927
21 TraesCS1D01G125200 chr2B 253270047 253270857 810 False 210.500000 322 93.633000 3872 4179 2 chr2B.!!$F3 307


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
294 295 0.033405 ATTTGCAGCCATCTGAGCCT 60.033 50.000 0.00 0.00 42.95 4.58 F
313 314 0.037139 TTGATGCAATGCAGGCAACC 60.037 50.000 18.29 13.61 45.60 3.77 F
318 319 0.037139 GCAATGCAGGCAACCAATCA 60.037 50.000 0.00 0.00 37.17 2.57 F
1543 1553 0.919710 GGCCTACCTGGGTCTTGATT 59.080 55.000 0.00 0.00 36.00 2.57 F
3118 3266 0.038159 CCGTGGAGACAAGACAGGAC 60.038 60.000 0.00 0.00 46.06 3.85 F
3119 3267 0.038159 CGTGGAGACAAGACAGGACC 60.038 60.000 0.00 0.00 46.06 4.46 F
3657 4097 0.250295 TCTTGGTTGGTGGAGAAGCG 60.250 55.000 0.00 0.00 0.00 4.68 F
3672 4112 0.392193 AAGCGAAGACTCTGGCCATG 60.392 55.000 5.51 4.91 0.00 3.66 F
5235 9045 1.068121 GCTGGGATTGGGCCTAGTAT 58.932 55.000 4.53 0.00 38.65 2.12 F
6160 10001 1.496857 TGATTTGACCCACCCACTTCA 59.503 47.619 0.00 0.00 0.00 3.02 F
6223 10070 3.389329 TCTTCTGAGGGCATATGTTCTCC 59.611 47.826 18.25 10.13 0.00 3.71 F
6570 11842 6.406692 TGCAAGTCCTCCAGTAAGTATATC 57.593 41.667 0.00 0.00 0.00 1.63 F
7296 12776 8.477419 TGGAAGAGAAAAATTGGTAGAAACAT 57.523 30.769 0.00 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1648 1664 0.533951 CGCGAACCCTACTACCCTTT 59.466 55.000 0.00 0.00 0.00 3.11 R
2227 2246 2.633967 TCGGAACACCTACCAGCTTTAA 59.366 45.455 0.00 0.00 0.00 1.52 R
2387 2408 2.302157 GGTACTCGAATATCCCAAGGGG 59.698 54.545 5.08 0.00 46.11 4.79 R
3122 3270 0.551396 GAGGGTTAGTGGAATGGGGG 59.449 60.000 0.00 0.00 0.00 5.40 R
5038 8711 0.325296 ACATGCTCCCTCCGTTCCTA 60.325 55.000 0.00 0.00 0.00 2.94 R
5040 8713 0.759346 ATACATGCTCCCTCCGTTCC 59.241 55.000 0.00 0.00 0.00 3.62 R
5235 9045 0.541998 TTCACCGAGGAGCCTTGAGA 60.542 55.000 5.30 0.78 0.00 3.27 R
5364 9174 0.804989 GCTGCCAGCATTAGACGTTT 59.195 50.000 12.82 0.00 41.89 3.60 R
7135 12614 0.472471 TTGTGAGACCACCCAAGGAC 59.528 55.000 0.00 0.00 42.53 3.85 R
7136 12615 1.217916 TTTGTGAGACCACCCAAGGA 58.782 50.000 0.00 0.00 42.53 3.36 R
7311 12791 2.097036 CATCACTGCCATGTCACCAAT 58.903 47.619 0.00 0.00 0.00 3.16 R
7466 12946 2.154854 TTCAACTCTGAACTCTGGCG 57.845 50.000 0.00 0.00 36.62 5.69 R
9243 15128 0.320073 CGGTTGGACAGCGTTTAGGA 60.320 55.000 0.00 0.00 41.69 2.94 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.954452 CCATATTTTGCCGAGGGAGC 59.046 55.000 0.00 0.00 0.00 4.70
20 21 1.679139 CATATTTTGCCGAGGGAGCA 58.321 50.000 0.00 0.00 38.81 4.26
21 22 1.605710 CATATTTTGCCGAGGGAGCAG 59.394 52.381 0.00 0.00 42.17 4.24
22 23 0.748005 TATTTTGCCGAGGGAGCAGC 60.748 55.000 0.00 0.00 42.17 5.25
23 24 2.769652 ATTTTGCCGAGGGAGCAGCA 62.770 55.000 0.00 0.00 42.17 4.41
24 25 4.704833 TTGCCGAGGGAGCAGCAC 62.705 66.667 0.00 0.00 42.17 4.40
42 43 3.099170 CCTGGGGTCCATCAGGGG 61.099 72.222 18.09 0.59 44.99 4.79
43 44 3.813724 CTGGGGTCCATCAGGGGC 61.814 72.222 4.12 0.00 42.12 5.80
44 45 4.692041 TGGGGTCCATCAGGGGCA 62.692 66.667 0.00 0.00 45.89 5.36
45 46 3.105928 GGGGTCCATCAGGGGCAT 61.106 66.667 0.00 0.00 45.89 4.40
46 47 2.196776 GGGTCCATCAGGGGCATG 59.803 66.667 0.00 0.00 45.89 4.06
47 48 2.196776 GGTCCATCAGGGGCATGG 59.803 66.667 0.00 0.00 45.89 3.66
48 49 2.196776 GTCCATCAGGGGCATGGG 59.803 66.667 0.00 0.00 42.53 4.00
49 50 2.044280 TCCATCAGGGGCATGGGA 59.956 61.111 0.00 0.00 41.25 4.37
50 51 1.387781 TCCATCAGGGGCATGGGAT 60.388 57.895 0.00 0.00 41.25 3.85
51 52 1.228769 CCATCAGGGGCATGGGATG 60.229 63.158 0.00 0.00 37.71 3.51
62 63 2.779271 TGGGATGCCCTGCCATTT 59.221 55.556 0.00 0.00 45.70 2.32
63 64 1.080722 TGGGATGCCCTGCCATTTT 59.919 52.632 0.00 0.00 45.70 1.82
64 65 0.337773 TGGGATGCCCTGCCATTTTA 59.662 50.000 0.00 0.00 45.70 1.52
65 66 1.273495 TGGGATGCCCTGCCATTTTAA 60.273 47.619 0.00 0.00 45.70 1.52
66 67 1.836802 GGGATGCCCTGCCATTTTAAA 59.163 47.619 0.00 0.00 41.34 1.52
67 68 2.419990 GGGATGCCCTGCCATTTTAAAC 60.420 50.000 0.00 0.00 41.34 2.01
68 69 2.501316 GGATGCCCTGCCATTTTAAACT 59.499 45.455 0.00 0.00 0.00 2.66
69 70 3.055167 GGATGCCCTGCCATTTTAAACTT 60.055 43.478 0.00 0.00 0.00 2.66
70 71 4.161377 GGATGCCCTGCCATTTTAAACTTA 59.839 41.667 0.00 0.00 0.00 2.24
71 72 5.163311 GGATGCCCTGCCATTTTAAACTTAT 60.163 40.000 0.00 0.00 0.00 1.73
72 73 5.083533 TGCCCTGCCATTTTAAACTTATG 57.916 39.130 0.00 0.00 0.00 1.90
73 74 3.871006 GCCCTGCCATTTTAAACTTATGC 59.129 43.478 0.00 0.00 0.00 3.14
74 75 4.441792 CCCTGCCATTTTAAACTTATGCC 58.558 43.478 0.00 0.00 0.00 4.40
75 76 4.162131 CCCTGCCATTTTAAACTTATGCCT 59.838 41.667 0.00 0.00 0.00 4.75
76 77 5.362430 CCCTGCCATTTTAAACTTATGCCTA 59.638 40.000 0.00 0.00 0.00 3.93
77 78 6.461509 CCCTGCCATTTTAAACTTATGCCTAG 60.462 42.308 0.00 0.00 0.00 3.02
78 79 6.096846 CCTGCCATTTTAAACTTATGCCTAGT 59.903 38.462 0.00 0.00 0.00 2.57
79 80 7.284489 CCTGCCATTTTAAACTTATGCCTAGTA 59.716 37.037 0.00 0.00 0.00 1.82
80 81 8.220755 TGCCATTTTAAACTTATGCCTAGTAG 57.779 34.615 0.00 0.00 0.00 2.57
81 82 8.050325 TGCCATTTTAAACTTATGCCTAGTAGA 58.950 33.333 0.00 0.00 0.00 2.59
82 83 9.067986 GCCATTTTAAACTTATGCCTAGTAGAT 57.932 33.333 0.00 0.00 0.00 1.98
92 93 8.474025 ACTTATGCCTAGTAGATTATGATCTGC 58.526 37.037 10.15 8.73 42.55 4.26
93 94 5.667539 TGCCTAGTAGATTATGATCTGCC 57.332 43.478 10.15 1.25 43.59 4.85
94 95 5.336945 TGCCTAGTAGATTATGATCTGCCT 58.663 41.667 10.15 8.14 43.59 4.75
95 96 5.186603 TGCCTAGTAGATTATGATCTGCCTG 59.813 44.000 10.15 4.76 43.59 4.85
96 97 5.186797 GCCTAGTAGATTATGATCTGCCTGT 59.813 44.000 10.15 0.00 43.59 4.00
97 98 6.295575 GCCTAGTAGATTATGATCTGCCTGTT 60.296 42.308 10.15 0.00 43.59 3.16
98 99 7.319646 CCTAGTAGATTATGATCTGCCTGTTC 58.680 42.308 10.15 0.00 43.59 3.18
99 100 6.992664 AGTAGATTATGATCTGCCTGTTCT 57.007 37.500 10.15 0.00 43.59 3.01
100 101 7.372260 AGTAGATTATGATCTGCCTGTTCTT 57.628 36.000 10.15 0.00 43.59 2.52
101 102 7.800092 AGTAGATTATGATCTGCCTGTTCTTT 58.200 34.615 10.15 0.00 43.59 2.52
102 103 6.939132 AGATTATGATCTGCCTGTTCTTTG 57.061 37.500 0.00 0.00 41.09 2.77
103 104 4.970662 TTATGATCTGCCTGTTCTTTGC 57.029 40.909 0.00 0.00 0.00 3.68
104 105 2.574006 TGATCTGCCTGTTCTTTGCT 57.426 45.000 0.00 0.00 0.00 3.91
105 106 2.867624 TGATCTGCCTGTTCTTTGCTT 58.132 42.857 0.00 0.00 0.00 3.91
106 107 2.555325 TGATCTGCCTGTTCTTTGCTTG 59.445 45.455 0.00 0.00 0.00 4.01
107 108 2.057137 TCTGCCTGTTCTTTGCTTGT 57.943 45.000 0.00 0.00 0.00 3.16
108 109 2.378038 TCTGCCTGTTCTTTGCTTGTT 58.622 42.857 0.00 0.00 0.00 2.83
109 110 2.358898 TCTGCCTGTTCTTTGCTTGTTC 59.641 45.455 0.00 0.00 0.00 3.18
110 111 2.360165 CTGCCTGTTCTTTGCTTGTTCT 59.640 45.455 0.00 0.00 0.00 3.01
111 112 2.760092 TGCCTGTTCTTTGCTTGTTCTT 59.240 40.909 0.00 0.00 0.00 2.52
112 113 3.118542 GCCTGTTCTTTGCTTGTTCTTG 58.881 45.455 0.00 0.00 0.00 3.02
113 114 3.118542 CCTGTTCTTTGCTTGTTCTTGC 58.881 45.455 0.00 0.00 0.00 4.01
114 115 3.181483 CCTGTTCTTTGCTTGTTCTTGCT 60.181 43.478 0.00 0.00 0.00 3.91
115 116 3.772932 TGTTCTTTGCTTGTTCTTGCTG 58.227 40.909 0.00 0.00 0.00 4.41
116 117 3.193267 TGTTCTTTGCTTGTTCTTGCTGT 59.807 39.130 0.00 0.00 0.00 4.40
117 118 4.176271 GTTCTTTGCTTGTTCTTGCTGTT 58.824 39.130 0.00 0.00 0.00 3.16
118 119 4.454728 TCTTTGCTTGTTCTTGCTGTTT 57.545 36.364 0.00 0.00 0.00 2.83
119 120 4.819769 TCTTTGCTTGTTCTTGCTGTTTT 58.180 34.783 0.00 0.00 0.00 2.43
120 121 5.237048 TCTTTGCTTGTTCTTGCTGTTTTT 58.763 33.333 0.00 0.00 0.00 1.94
121 122 4.925061 TTGCTTGTTCTTGCTGTTTTTG 57.075 36.364 0.00 0.00 0.00 2.44
122 123 3.924144 TGCTTGTTCTTGCTGTTTTTGT 58.076 36.364 0.00 0.00 0.00 2.83
123 124 3.679025 TGCTTGTTCTTGCTGTTTTTGTG 59.321 39.130 0.00 0.00 0.00 3.33
124 125 3.679502 GCTTGTTCTTGCTGTTTTTGTGT 59.320 39.130 0.00 0.00 0.00 3.72
125 126 4.152223 GCTTGTTCTTGCTGTTTTTGTGTT 59.848 37.500 0.00 0.00 0.00 3.32
126 127 5.588568 TTGTTCTTGCTGTTTTTGTGTTG 57.411 34.783 0.00 0.00 0.00 3.33
127 128 3.431572 TGTTCTTGCTGTTTTTGTGTTGC 59.568 39.130 0.00 0.00 0.00 4.17
128 129 3.591196 TCTTGCTGTTTTTGTGTTGCT 57.409 38.095 0.00 0.00 0.00 3.91
129 130 3.252400 TCTTGCTGTTTTTGTGTTGCTG 58.748 40.909 0.00 0.00 0.00 4.41
130 131 3.056962 TCTTGCTGTTTTTGTGTTGCTGA 60.057 39.130 0.00 0.00 0.00 4.26
131 132 3.523606 TGCTGTTTTTGTGTTGCTGAT 57.476 38.095 0.00 0.00 0.00 2.90
132 133 3.188492 TGCTGTTTTTGTGTTGCTGATG 58.812 40.909 0.00 0.00 0.00 3.07
133 134 3.119209 TGCTGTTTTTGTGTTGCTGATGA 60.119 39.130 0.00 0.00 0.00 2.92
134 135 4.053295 GCTGTTTTTGTGTTGCTGATGAT 58.947 39.130 0.00 0.00 0.00 2.45
135 136 4.149396 GCTGTTTTTGTGTTGCTGATGATC 59.851 41.667 0.00 0.00 0.00 2.92
136 137 5.259832 TGTTTTTGTGTTGCTGATGATCA 57.740 34.783 0.00 0.00 0.00 2.92
137 138 5.845103 TGTTTTTGTGTTGCTGATGATCAT 58.155 33.333 8.25 8.25 0.00 2.45
138 139 6.979465 TGTTTTTGTGTTGCTGATGATCATA 58.021 32.000 8.54 0.00 0.00 2.15
139 140 7.085746 TGTTTTTGTGTTGCTGATGATCATAG 58.914 34.615 8.54 7.84 0.00 2.23
140 141 6.822667 TTTTGTGTTGCTGATGATCATAGT 57.177 33.333 8.54 0.00 0.00 2.12
141 142 5.806366 TTGTGTTGCTGATGATCATAGTG 57.194 39.130 8.54 3.08 0.00 2.74
142 143 4.835678 TGTGTTGCTGATGATCATAGTGT 58.164 39.130 8.54 0.00 0.00 3.55
143 144 4.632688 TGTGTTGCTGATGATCATAGTGTG 59.367 41.667 8.54 0.00 0.00 3.82
144 145 4.633126 GTGTTGCTGATGATCATAGTGTGT 59.367 41.667 8.54 0.00 0.00 3.72
145 146 5.122869 GTGTTGCTGATGATCATAGTGTGTT 59.877 40.000 8.54 0.00 0.00 3.32
146 147 5.122711 TGTTGCTGATGATCATAGTGTGTTG 59.877 40.000 8.54 0.00 0.00 3.33
147 148 4.835678 TGCTGATGATCATAGTGTGTTGT 58.164 39.130 8.54 0.00 0.00 3.32
148 149 4.632688 TGCTGATGATCATAGTGTGTTGTG 59.367 41.667 8.54 0.00 0.00 3.33
149 150 4.633126 GCTGATGATCATAGTGTGTTGTGT 59.367 41.667 8.54 0.00 0.00 3.72
150 151 5.446875 GCTGATGATCATAGTGTGTTGTGTG 60.447 44.000 8.54 0.00 0.00 3.82
151 152 4.392754 TGATGATCATAGTGTGTTGTGTGC 59.607 41.667 8.54 0.00 0.00 4.57
152 153 4.006780 TGATCATAGTGTGTTGTGTGCT 57.993 40.909 0.00 0.00 0.00 4.40
153 154 3.747529 TGATCATAGTGTGTTGTGTGCTG 59.252 43.478 0.00 0.00 0.00 4.41
154 155 3.192541 TCATAGTGTGTTGTGTGCTGT 57.807 42.857 0.00 0.00 0.00 4.40
155 156 3.130633 TCATAGTGTGTTGTGTGCTGTC 58.869 45.455 0.00 0.00 0.00 3.51
156 157 2.682155 TAGTGTGTTGTGTGCTGTCA 57.318 45.000 0.00 0.00 0.00 3.58
157 158 1.819928 AGTGTGTTGTGTGCTGTCAA 58.180 45.000 0.00 0.00 0.00 3.18
158 159 2.158559 AGTGTGTTGTGTGCTGTCAAA 58.841 42.857 0.00 0.00 0.00 2.69
159 160 2.754552 AGTGTGTTGTGTGCTGTCAAAT 59.245 40.909 0.00 0.00 0.00 2.32
160 161 2.853594 GTGTGTTGTGTGCTGTCAAATG 59.146 45.455 0.00 0.00 0.00 2.32
161 162 2.159268 TGTGTTGTGTGCTGTCAAATGG 60.159 45.455 0.00 0.00 0.00 3.16
162 163 1.408340 TGTTGTGTGCTGTCAAATGGG 59.592 47.619 0.00 0.00 0.00 4.00
163 164 1.408702 GTTGTGTGCTGTCAAATGGGT 59.591 47.619 0.00 0.00 0.00 4.51
164 165 1.031235 TGTGTGCTGTCAAATGGGTG 58.969 50.000 0.00 0.00 0.00 4.61
165 166 0.314935 GTGTGCTGTCAAATGGGTGG 59.685 55.000 0.00 0.00 0.00 4.61
166 167 0.106268 TGTGCTGTCAAATGGGTGGT 60.106 50.000 0.00 0.00 0.00 4.16
167 168 1.143889 TGTGCTGTCAAATGGGTGGTA 59.856 47.619 0.00 0.00 0.00 3.25
168 169 2.235016 GTGCTGTCAAATGGGTGGTAA 58.765 47.619 0.00 0.00 0.00 2.85
169 170 2.030274 GTGCTGTCAAATGGGTGGTAAC 60.030 50.000 0.00 0.00 0.00 2.50
170 171 2.158534 TGCTGTCAAATGGGTGGTAACT 60.159 45.455 0.00 0.00 37.61 2.24
171 172 2.488153 GCTGTCAAATGGGTGGTAACTC 59.512 50.000 0.00 0.00 37.61 3.01
183 184 3.866703 TGGTAACTCCACCACATTTGA 57.133 42.857 0.00 0.00 43.76 2.69
184 185 4.171878 TGGTAACTCCACCACATTTGAA 57.828 40.909 0.00 0.00 43.76 2.69
185 186 4.537751 TGGTAACTCCACCACATTTGAAA 58.462 39.130 0.00 0.00 43.76 2.69
186 187 4.582656 TGGTAACTCCACCACATTTGAAAG 59.417 41.667 0.00 0.00 43.76 2.62
187 188 4.825085 GGTAACTCCACCACATTTGAAAGA 59.175 41.667 0.00 0.00 38.55 2.52
188 189 5.048713 GGTAACTCCACCACATTTGAAAGAG 60.049 44.000 0.00 0.00 38.55 2.85
189 190 4.437682 ACTCCACCACATTTGAAAGAGA 57.562 40.909 0.00 0.00 0.00 3.10
190 191 4.990526 ACTCCACCACATTTGAAAGAGAT 58.009 39.130 0.00 0.00 0.00 2.75
191 192 4.763793 ACTCCACCACATTTGAAAGAGATG 59.236 41.667 0.00 0.00 0.00 2.90
192 193 4.984295 TCCACCACATTTGAAAGAGATGA 58.016 39.130 0.00 0.00 0.00 2.92
193 194 5.005740 TCCACCACATTTGAAAGAGATGAG 58.994 41.667 0.00 0.00 0.00 2.90
194 195 4.380233 CCACCACATTTGAAAGAGATGAGC 60.380 45.833 0.00 0.00 0.00 4.26
195 196 4.216902 CACCACATTTGAAAGAGATGAGCA 59.783 41.667 0.00 0.00 0.00 4.26
196 197 4.458295 ACCACATTTGAAAGAGATGAGCAG 59.542 41.667 0.00 0.00 0.00 4.24
197 198 4.698780 CCACATTTGAAAGAGATGAGCAGA 59.301 41.667 0.00 0.00 0.00 4.26
198 199 5.357314 CCACATTTGAAAGAGATGAGCAGAT 59.643 40.000 0.00 0.00 0.00 2.90
199 200 6.127703 CCACATTTGAAAGAGATGAGCAGATT 60.128 38.462 0.00 0.00 0.00 2.40
200 201 7.066645 CCACATTTGAAAGAGATGAGCAGATTA 59.933 37.037 0.00 0.00 0.00 1.75
201 202 8.456471 CACATTTGAAAGAGATGAGCAGATTAA 58.544 33.333 0.00 0.00 0.00 1.40
202 203 8.675504 ACATTTGAAAGAGATGAGCAGATTAAG 58.324 33.333 0.00 0.00 0.00 1.85
203 204 8.675504 CATTTGAAAGAGATGAGCAGATTAAGT 58.324 33.333 0.00 0.00 0.00 2.24
204 205 9.896645 ATTTGAAAGAGATGAGCAGATTAAGTA 57.103 29.630 0.00 0.00 0.00 2.24
205 206 8.709386 TTGAAAGAGATGAGCAGATTAAGTAC 57.291 34.615 0.00 0.00 0.00 2.73
206 207 8.072321 TGAAAGAGATGAGCAGATTAAGTACT 57.928 34.615 0.00 0.00 0.00 2.73
207 208 8.535335 TGAAAGAGATGAGCAGATTAAGTACTT 58.465 33.333 13.68 13.68 0.00 2.24
208 209 8.715191 AAAGAGATGAGCAGATTAAGTACTTG 57.285 34.615 18.56 2.62 0.00 3.16
209 210 6.279882 AGAGATGAGCAGATTAAGTACTTGC 58.720 40.000 18.56 13.03 0.00 4.01
210 211 5.982356 AGATGAGCAGATTAAGTACTTGCA 58.018 37.500 18.56 5.11 0.00 4.08
211 212 5.814705 AGATGAGCAGATTAAGTACTTGCAC 59.185 40.000 18.56 11.97 0.00 4.57
212 213 4.893608 TGAGCAGATTAAGTACTTGCACA 58.106 39.130 18.56 14.34 0.00 4.57
213 214 4.690748 TGAGCAGATTAAGTACTTGCACAC 59.309 41.667 18.56 9.19 0.00 3.82
214 215 4.641396 AGCAGATTAAGTACTTGCACACA 58.359 39.130 18.56 0.00 0.00 3.72
215 216 5.063204 AGCAGATTAAGTACTTGCACACAA 58.937 37.500 18.56 3.56 0.00 3.33
216 217 5.049405 AGCAGATTAAGTACTTGCACACAAC 60.049 40.000 18.56 1.41 0.00 3.32
217 218 5.689819 CAGATTAAGTACTTGCACACAACC 58.310 41.667 18.56 0.00 0.00 3.77
218 219 5.238432 CAGATTAAGTACTTGCACACAACCA 59.762 40.000 18.56 0.00 0.00 3.67
219 220 5.825679 AGATTAAGTACTTGCACACAACCAA 59.174 36.000 18.56 0.59 0.00 3.67
220 221 5.899120 TTAAGTACTTGCACACAACCAAA 57.101 34.783 18.56 0.00 0.00 3.28
221 222 3.775661 AGTACTTGCACACAACCAAAC 57.224 42.857 0.00 0.00 0.00 2.93
222 223 3.085533 AGTACTTGCACACAACCAAACA 58.914 40.909 0.00 0.00 0.00 2.83
223 224 3.508012 AGTACTTGCACACAACCAAACAA 59.492 39.130 0.00 0.00 0.00 2.83
224 225 2.682836 ACTTGCACACAACCAAACAAC 58.317 42.857 0.00 0.00 0.00 3.32
225 226 2.298729 ACTTGCACACAACCAAACAACT 59.701 40.909 0.00 0.00 0.00 3.16
226 227 2.360553 TGCACACAACCAAACAACTG 57.639 45.000 0.00 0.00 0.00 3.16
227 228 1.615883 TGCACACAACCAAACAACTGT 59.384 42.857 0.00 0.00 0.00 3.55
228 229 1.991965 GCACACAACCAAACAACTGTG 59.008 47.619 0.00 0.00 43.81 3.66
229 230 1.991965 CACACAACCAAACAACTGTGC 59.008 47.619 1.14 0.00 42.33 4.57
230 231 1.892474 ACACAACCAAACAACTGTGCT 59.108 42.857 1.14 0.00 42.33 4.40
231 232 2.298729 ACACAACCAAACAACTGTGCTT 59.701 40.909 1.14 0.00 42.33 3.91
232 233 3.244044 ACACAACCAAACAACTGTGCTTT 60.244 39.130 1.14 0.00 42.33 3.51
233 234 3.123284 CACAACCAAACAACTGTGCTTTG 59.877 43.478 4.29 4.29 33.41 2.77
234 235 2.008752 ACCAAACAACTGTGCTTTGC 57.991 45.000 5.37 0.00 30.67 3.68
235 236 1.274728 ACCAAACAACTGTGCTTTGCA 59.725 42.857 5.37 0.00 35.60 4.08
236 237 2.093553 ACCAAACAACTGTGCTTTGCAT 60.094 40.909 0.00 0.00 41.91 3.96
237 238 2.540931 CCAAACAACTGTGCTTTGCATC 59.459 45.455 0.00 0.00 41.91 3.91
238 239 3.450578 CAAACAACTGTGCTTTGCATCT 58.549 40.909 0.00 0.00 41.91 2.90
239 240 2.787601 ACAACTGTGCTTTGCATCTG 57.212 45.000 0.00 0.00 41.91 2.90
240 241 1.269413 ACAACTGTGCTTTGCATCTGC 60.269 47.619 0.00 0.00 41.91 4.26
241 242 1.000607 CAACTGTGCTTTGCATCTGCT 60.001 47.619 3.53 0.00 41.91 4.24
242 243 0.879765 ACTGTGCTTTGCATCTGCTC 59.120 50.000 3.53 4.93 41.91 4.26
243 244 0.879090 CTGTGCTTTGCATCTGCTCA 59.121 50.000 3.53 8.48 41.91 4.26
244 245 0.594602 TGTGCTTTGCATCTGCTCAC 59.405 50.000 3.53 7.00 41.91 3.51
245 246 0.594602 GTGCTTTGCATCTGCTCACA 59.405 50.000 3.53 0.00 41.91 3.58
246 247 0.594602 TGCTTTGCATCTGCTCACAC 59.405 50.000 3.53 0.00 42.66 3.82
247 248 0.109412 GCTTTGCATCTGCTCACACC 60.109 55.000 3.53 0.00 42.66 4.16
248 249 1.531423 CTTTGCATCTGCTCACACCT 58.469 50.000 3.53 0.00 42.66 4.00
249 250 2.703416 CTTTGCATCTGCTCACACCTA 58.297 47.619 3.53 0.00 42.66 3.08
250 251 2.857186 TTGCATCTGCTCACACCTAA 57.143 45.000 3.53 0.00 42.66 2.69
251 252 2.857186 TGCATCTGCTCACACCTAAA 57.143 45.000 3.53 0.00 42.66 1.85
252 253 2.703416 TGCATCTGCTCACACCTAAAG 58.297 47.619 3.53 0.00 42.66 1.85
253 254 1.399791 GCATCTGCTCACACCTAAAGC 59.600 52.381 0.00 0.00 38.21 3.51
254 255 1.662629 CATCTGCTCACACCTAAAGCG 59.337 52.381 0.00 0.00 38.90 4.68
255 256 0.670546 TCTGCTCACACCTAAAGCGC 60.671 55.000 0.00 0.00 38.90 5.92
256 257 0.950555 CTGCTCACACCTAAAGCGCA 60.951 55.000 11.47 0.00 38.90 6.09
257 258 0.533978 TGCTCACACCTAAAGCGCAA 60.534 50.000 11.47 0.00 38.90 4.85
258 259 0.591170 GCTCACACCTAAAGCGCAAA 59.409 50.000 11.47 0.00 0.00 3.68
259 260 1.663161 GCTCACACCTAAAGCGCAAAC 60.663 52.381 11.47 0.00 0.00 2.93
260 261 1.601903 CTCACACCTAAAGCGCAAACA 59.398 47.619 11.47 0.00 0.00 2.83
261 262 1.332375 TCACACCTAAAGCGCAAACAC 59.668 47.619 11.47 0.00 0.00 3.32
262 263 1.064803 CACACCTAAAGCGCAAACACA 59.935 47.619 11.47 0.00 0.00 3.72
263 264 1.333619 ACACCTAAAGCGCAAACACAG 59.666 47.619 11.47 0.00 0.00 3.66
264 265 0.951558 ACCTAAAGCGCAAACACAGG 59.048 50.000 11.47 9.49 0.00 4.00
265 266 0.387239 CCTAAAGCGCAAACACAGGC 60.387 55.000 11.47 0.00 0.00 4.85
266 267 0.310543 CTAAAGCGCAAACACAGGCA 59.689 50.000 11.47 0.00 0.00 4.75
267 268 0.741326 TAAAGCGCAAACACAGGCAA 59.259 45.000 11.47 0.00 0.00 4.52
268 269 0.805711 AAAGCGCAAACACAGGCAAC 60.806 50.000 11.47 0.00 0.00 4.17
269 270 2.627510 AAGCGCAAACACAGGCAACC 62.628 55.000 11.47 0.00 37.17 3.77
270 271 2.804167 CGCAAACACAGGCAACCA 59.196 55.556 0.00 0.00 37.17 3.67
271 272 1.140589 CGCAAACACAGGCAACCAA 59.859 52.632 0.00 0.00 37.17 3.67
272 273 0.459237 CGCAAACACAGGCAACCAAA 60.459 50.000 0.00 0.00 37.17 3.28
273 274 1.006086 GCAAACACAGGCAACCAAAC 58.994 50.000 0.00 0.00 37.17 2.93
274 275 1.674221 GCAAACACAGGCAACCAAACA 60.674 47.619 0.00 0.00 37.17 2.83
275 276 2.693069 CAAACACAGGCAACCAAACAA 58.307 42.857 0.00 0.00 37.17 2.83
276 277 3.269178 CAAACACAGGCAACCAAACAAT 58.731 40.909 0.00 0.00 37.17 2.71
277 278 3.625649 AACACAGGCAACCAAACAATT 57.374 38.095 0.00 0.00 37.17 2.32
278 279 3.625649 ACACAGGCAACCAAACAATTT 57.374 38.095 0.00 0.00 37.17 1.82
279 280 3.269178 ACACAGGCAACCAAACAATTTG 58.731 40.909 0.00 0.00 40.32 2.32
280 281 2.031930 CACAGGCAACCAAACAATTTGC 59.968 45.455 0.00 0.00 44.05 3.68
281 282 2.286872 CAGGCAACCAAACAATTTGCA 58.713 42.857 7.74 0.00 46.12 4.08
282 283 2.288458 CAGGCAACCAAACAATTTGCAG 59.712 45.455 7.74 0.00 46.12 4.41
283 284 1.002576 GGCAACCAAACAATTTGCAGC 60.003 47.619 7.74 0.00 46.12 5.25
284 285 1.002576 GCAACCAAACAATTTGCAGCC 60.003 47.619 0.00 0.00 44.17 4.85
285 286 2.286872 CAACCAAACAATTTGCAGCCA 58.713 42.857 0.00 0.00 39.31 4.75
286 287 2.879646 CAACCAAACAATTTGCAGCCAT 59.120 40.909 0.00 0.00 39.31 4.40
287 288 2.769893 ACCAAACAATTTGCAGCCATC 58.230 42.857 0.00 0.00 39.31 3.51
288 289 2.369532 ACCAAACAATTTGCAGCCATCT 59.630 40.909 0.00 0.00 39.31 2.90
289 290 2.739913 CCAAACAATTTGCAGCCATCTG 59.260 45.455 0.00 0.00 43.16 2.90
290 291 3.555377 CCAAACAATTTGCAGCCATCTGA 60.555 43.478 0.00 0.00 42.01 3.27
291 292 3.587797 AACAATTTGCAGCCATCTGAG 57.412 42.857 0.00 0.00 42.95 3.35
292 293 1.203994 ACAATTTGCAGCCATCTGAGC 59.796 47.619 0.00 0.00 42.95 4.26
293 294 0.822164 AATTTGCAGCCATCTGAGCC 59.178 50.000 0.00 0.00 42.95 4.70
294 295 0.033405 ATTTGCAGCCATCTGAGCCT 60.033 50.000 0.00 0.00 42.95 4.58
295 296 0.251474 TTTGCAGCCATCTGAGCCTT 60.251 50.000 0.00 0.00 42.95 4.35
296 297 0.963856 TTGCAGCCATCTGAGCCTTG 60.964 55.000 0.00 0.00 42.95 3.61
297 298 1.077930 GCAGCCATCTGAGCCTTGA 60.078 57.895 0.00 0.00 42.95 3.02
298 299 0.465824 GCAGCCATCTGAGCCTTGAT 60.466 55.000 0.00 0.00 42.95 2.57
299 300 1.309950 CAGCCATCTGAGCCTTGATG 58.690 55.000 0.00 0.00 42.95 3.07
300 301 0.465824 AGCCATCTGAGCCTTGATGC 60.466 55.000 0.00 0.00 38.84 3.91
301 302 0.750546 GCCATCTGAGCCTTGATGCA 60.751 55.000 0.00 0.00 38.84 3.96
302 303 1.758936 CCATCTGAGCCTTGATGCAA 58.241 50.000 0.00 0.00 38.84 4.08
303 304 2.307768 CCATCTGAGCCTTGATGCAAT 58.692 47.619 0.00 0.00 38.84 3.56
304 305 2.034685 CCATCTGAGCCTTGATGCAATG 59.965 50.000 0.00 0.00 38.84 2.82
305 306 1.100510 TCTGAGCCTTGATGCAATGC 58.899 50.000 0.00 0.00 35.73 3.56
306 307 0.815095 CTGAGCCTTGATGCAATGCA 59.185 50.000 11.44 11.44 44.86 3.96
307 308 0.815095 TGAGCCTTGATGCAATGCAG 59.185 50.000 14.98 0.00 43.65 4.41
308 309 0.102481 GAGCCTTGATGCAATGCAGG 59.898 55.000 14.98 10.48 43.65 4.85
309 310 1.520787 GCCTTGATGCAATGCAGGC 60.521 57.895 18.20 18.20 43.65 4.85
310 311 1.894512 CCTTGATGCAATGCAGGCA 59.105 52.632 14.98 16.95 43.65 4.75
311 312 0.248012 CCTTGATGCAATGCAGGCAA 59.752 50.000 18.29 18.07 45.60 4.52
312 313 1.355971 CTTGATGCAATGCAGGCAAC 58.644 50.000 18.29 16.04 45.60 4.17
313 314 0.037139 TTGATGCAATGCAGGCAACC 60.037 50.000 18.29 13.61 45.60 3.77
314 315 1.186267 TGATGCAATGCAGGCAACCA 61.186 50.000 18.29 15.61 45.60 3.67
315 316 0.037139 GATGCAATGCAGGCAACCAA 60.037 50.000 18.29 0.00 45.60 3.67
316 317 0.616371 ATGCAATGCAGGCAACCAAT 59.384 45.000 18.29 0.69 45.60 3.16
317 318 0.037139 TGCAATGCAGGCAACCAATC 60.037 50.000 12.89 0.00 38.54 2.67
318 319 0.037139 GCAATGCAGGCAACCAATCA 60.037 50.000 0.00 0.00 37.17 2.57
319 320 1.608542 GCAATGCAGGCAACCAATCAA 60.609 47.619 0.00 0.00 37.17 2.57
320 321 2.070783 CAATGCAGGCAACCAATCAAC 58.929 47.619 0.00 0.00 37.17 3.18
321 322 1.340088 ATGCAGGCAACCAATCAACA 58.660 45.000 0.00 0.00 37.17 3.33
322 323 1.340088 TGCAGGCAACCAATCAACAT 58.660 45.000 0.00 0.00 37.17 2.71
323 324 1.001068 TGCAGGCAACCAATCAACATG 59.999 47.619 0.00 0.00 37.17 3.21
324 325 1.717194 CAGGCAACCAATCAACATGC 58.283 50.000 0.00 0.00 36.31 4.06
325 326 1.001068 CAGGCAACCAATCAACATGCA 59.999 47.619 0.00 0.00 38.73 3.96
326 327 1.274167 AGGCAACCAATCAACATGCAG 59.726 47.619 0.00 0.00 38.73 4.41
327 328 1.273048 GGCAACCAATCAACATGCAGA 59.727 47.619 0.00 0.00 38.73 4.26
328 329 2.093869 GGCAACCAATCAACATGCAGAT 60.094 45.455 0.00 0.00 38.73 2.90
843 844 1.069378 CGCTTTCTCGGTGGACGTAC 61.069 60.000 0.00 0.00 44.69 3.67
940 941 2.725641 CACCGTCGTGTGACCTCA 59.274 61.111 7.78 0.00 42.37 3.86
985 986 3.189921 CGTCATCCACGGTCGGTA 58.810 61.111 0.00 0.00 45.46 4.02
1176 1183 3.376935 CTTCGCCATGGACGCCTCT 62.377 63.158 18.40 0.00 0.00 3.69
1229 1236 3.239587 TCAGCCGTCGATTGTATTTCA 57.760 42.857 0.00 0.00 0.00 2.69
1441 1451 2.157738 CTCCCTTCTTCTGGTTTGCTG 58.842 52.381 0.00 0.00 0.00 4.41
1531 1541 0.958876 CACGAGGGTTTTGGCCTACC 60.959 60.000 3.32 9.06 0.00 3.18
1543 1553 0.919710 GGCCTACCTGGGTCTTGATT 59.080 55.000 0.00 0.00 36.00 2.57
1589 1603 4.388378 TTTTTCGTGGGGTTTAGGTTTG 57.612 40.909 0.00 0.00 0.00 2.93
1590 1604 2.732844 TTCGTGGGGTTTAGGTTTGT 57.267 45.000 0.00 0.00 0.00 2.83
1591 1605 1.970092 TCGTGGGGTTTAGGTTTGTG 58.030 50.000 0.00 0.00 0.00 3.33
1592 1606 0.955905 CGTGGGGTTTAGGTTTGTGG 59.044 55.000 0.00 0.00 0.00 4.17
1648 1664 7.124599 TCGAGGTGGAAAGTATCTTAATACCAA 59.875 37.037 0.00 0.00 38.88 3.67
1700 1716 7.745620 TTTGTCTTTAGGTTTCTGGAGATTC 57.254 36.000 0.00 0.00 0.00 2.52
1810 1826 4.623932 TTGTCTGTGTGCCTTTAGAGAT 57.376 40.909 0.00 0.00 0.00 2.75
1863 1879 7.079182 AGTTTCGTTGTGTTTGTAGAATTGA 57.921 32.000 0.00 0.00 0.00 2.57
2227 2246 4.497006 GCATGAATTTTGATGCTCTAGCGT 60.497 41.667 7.37 0.00 43.17 5.07
2612 2633 5.294060 GTGTTTGATTGTGCACAGGAAAAAT 59.706 36.000 20.59 9.50 32.62 1.82
2733 2754 4.033709 TCAAACAACCCATGGAGGAAAAA 58.966 39.130 15.22 0.00 41.22 1.94
2874 2895 2.691526 CTGGGCATTGCATGTATTCTGT 59.308 45.455 11.39 0.00 0.00 3.41
2887 2908 6.568462 GCATGTATTCTGTTAGCTGTTTGTGT 60.568 38.462 0.00 0.00 0.00 3.72
3111 3259 2.358737 GGGCACCGTGGAGACAAG 60.359 66.667 0.00 0.00 41.09 3.16
3112 3260 2.741092 GGCACCGTGGAGACAAGA 59.259 61.111 0.00 0.00 46.06 3.02
3113 3261 1.668151 GGCACCGTGGAGACAAGAC 60.668 63.158 0.00 0.00 46.06 3.01
3114 3262 1.069090 GCACCGTGGAGACAAGACA 59.931 57.895 0.00 0.00 46.06 3.41
3115 3263 0.946221 GCACCGTGGAGACAAGACAG 60.946 60.000 0.00 0.00 46.06 3.51
3116 3264 0.319900 CACCGTGGAGACAAGACAGG 60.320 60.000 0.00 0.00 46.06 4.00
3117 3265 0.469331 ACCGTGGAGACAAGACAGGA 60.469 55.000 0.00 0.00 46.06 3.86
3118 3266 0.038159 CCGTGGAGACAAGACAGGAC 60.038 60.000 0.00 0.00 46.06 3.85
3119 3267 0.038159 CGTGGAGACAAGACAGGACC 60.038 60.000 0.00 0.00 46.06 4.46
3120 3268 0.321996 GTGGAGACAAGACAGGACCC 59.678 60.000 0.00 0.00 46.06 4.46
3121 3269 0.836400 TGGAGACAAGACAGGACCCC 60.836 60.000 0.00 0.00 37.44 4.95
3122 3270 1.554583 GGAGACAAGACAGGACCCCC 61.555 65.000 0.00 0.00 0.00 5.40
3140 3288 2.723305 CCCCCATTCCACTAACCCT 58.277 57.895 0.00 0.00 0.00 4.34
3141 3289 0.551396 CCCCCATTCCACTAACCCTC 59.449 60.000 0.00 0.00 0.00 4.30
3142 3290 1.596496 CCCCATTCCACTAACCCTCT 58.404 55.000 0.00 0.00 0.00 3.69
3143 3291 2.631268 CCCCCATTCCACTAACCCTCTA 60.631 54.545 0.00 0.00 0.00 2.43
3144 3292 3.120108 CCCCATTCCACTAACCCTCTAA 58.880 50.000 0.00 0.00 0.00 2.10
3145 3293 3.118000 CCCCATTCCACTAACCCTCTAAC 60.118 52.174 0.00 0.00 0.00 2.34
3146 3294 3.118000 CCCATTCCACTAACCCTCTAACC 60.118 52.174 0.00 0.00 0.00 2.85
3217 3578 1.303155 GCCTGCTCTGCTCTGGTTT 60.303 57.895 0.00 0.00 0.00 3.27
3481 3874 2.040464 TGCTCCTCCCCTGGATCC 60.040 66.667 4.20 4.20 35.30 3.36
3523 3916 2.433446 CCTGCTGTGCTCCCTTGT 59.567 61.111 0.00 0.00 0.00 3.16
3657 4097 0.250295 TCTTGGTTGGTGGAGAAGCG 60.250 55.000 0.00 0.00 0.00 4.68
3672 4112 0.392193 AAGCGAAGACTCTGGCCATG 60.392 55.000 5.51 4.91 0.00 3.66
3687 4127 5.790096 TCTGGCCATGGGATATTATAGTTGA 59.210 40.000 15.13 0.00 0.00 3.18
3783 4223 1.682854 TCGCCGTCCGGAATTACTTAT 59.317 47.619 5.23 0.00 37.50 1.73
3859 4299 3.008456 CGACAAGTAATTTCGCACGAG 57.992 47.619 0.00 0.00 0.00 4.18
3862 4302 2.289195 ACAAGTAATTTCGCACGAGGGA 60.289 45.455 0.00 0.00 34.56 4.20
3863 4303 2.295253 AGTAATTTCGCACGAGGGAG 57.705 50.000 0.00 0.00 38.03 4.30
3864 4304 1.549170 AGTAATTTCGCACGAGGGAGT 59.451 47.619 0.00 0.00 38.03 3.85
3865 4305 2.756760 AGTAATTTCGCACGAGGGAGTA 59.243 45.455 0.00 0.00 38.03 2.59
3866 4306 2.981859 AATTTCGCACGAGGGAGTAT 57.018 45.000 0.00 0.00 38.03 2.12
3867 4307 4.581824 AGTAATTTCGCACGAGGGAGTATA 59.418 41.667 0.00 0.00 38.03 1.47
3868 4308 4.602340 AATTTCGCACGAGGGAGTATAT 57.398 40.909 0.00 0.00 38.03 0.86
3869 4309 5.717078 AATTTCGCACGAGGGAGTATATA 57.283 39.130 0.00 0.00 38.03 0.86
3870 4310 4.494350 TTTCGCACGAGGGAGTATATAC 57.506 45.455 4.60 4.60 38.03 1.47
4016 4456 7.007636 CAGTTTTGACAACTAACACCGTTAAAC 59.992 37.037 5.73 0.00 0.00 2.01
4044 4484 5.005094 CGTGAAAAGTCCATTTTACCCCTA 58.995 41.667 0.00 0.00 41.24 3.53
4243 5971 4.324641 GGAGGAAATTCTCCCAAGCTAAGT 60.325 45.833 2.36 0.00 46.81 2.24
4246 5974 5.250774 AGGAAATTCTCCCAAGCTAAGTACA 59.749 40.000 0.00 0.00 46.81 2.90
4266 5994 8.588290 AGTACATGTGAGAAGAGAAGAATAGT 57.412 34.615 9.11 0.00 0.00 2.12
4321 6175 4.630505 TGACTCAGCAGTAGTAGAAGTACG 59.369 45.833 0.00 0.00 30.99 3.67
4585 8173 2.765807 CCTCCCTCCATGCCTCGT 60.766 66.667 0.00 0.00 0.00 4.18
4825 8419 2.191981 ACTCCCTCCGTCCCATAATT 57.808 50.000 0.00 0.00 0.00 1.40
4845 8439 5.888412 ATTTAAGACGTTTTTGCAAGCTG 57.112 34.783 0.00 0.00 0.00 4.24
4846 8440 2.939460 AAGACGTTTTTGCAAGCTGT 57.061 40.000 0.00 0.00 0.00 4.40
4847 8441 2.939460 AGACGTTTTTGCAAGCTGTT 57.061 40.000 0.00 0.00 0.00 3.16
4895 8568 3.145286 GGACGGAGGGAGTACATACTAC 58.855 54.545 0.00 0.00 36.50 2.73
4896 8569 3.181446 GGACGGAGGGAGTACATACTACT 60.181 52.174 1.33 0.00 37.32 2.57
4897 8570 4.064388 GACGGAGGGAGTACATACTACTC 58.936 52.174 11.88 11.88 42.28 2.59
4904 8577 4.084011 GAGTACATACTACTCCCTCCGT 57.916 50.000 0.00 0.00 38.33 4.69
4905 8578 4.459330 GAGTACATACTACTCCCTCCGTT 58.541 47.826 0.00 0.00 38.33 4.44
4906 8579 4.459330 AGTACATACTACTCCCTCCGTTC 58.541 47.826 0.00 0.00 34.13 3.95
4907 8580 2.664015 ACATACTACTCCCTCCGTTCC 58.336 52.381 0.00 0.00 0.00 3.62
4908 8581 2.244252 ACATACTACTCCCTCCGTTCCT 59.756 50.000 0.00 0.00 0.00 3.36
4909 8582 3.461085 ACATACTACTCCCTCCGTTCCTA 59.539 47.826 0.00 0.00 0.00 2.94
4910 8583 4.079558 ACATACTACTCCCTCCGTTCCTAA 60.080 45.833 0.00 0.00 0.00 2.69
4911 8584 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4912 8585 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4913 8586 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4914 8587 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4915 8588 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
4916 8589 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
4917 8590 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4918 8591 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4919 8592 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4920 8593 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4921 8594 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4922 8595 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4923 8596 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4924 8597 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4941 8614 8.986929 AGTCTTTTTAGAGATTCCAATATGGG 57.013 34.615 0.00 0.00 38.32 4.00
4942 8615 7.503902 AGTCTTTTTAGAGATTCCAATATGGGC 59.496 37.037 0.00 0.00 38.32 5.36
4943 8616 7.503902 GTCTTTTTAGAGATTCCAATATGGGCT 59.496 37.037 0.00 0.00 38.32 5.19
4944 8617 8.723365 TCTTTTTAGAGATTCCAATATGGGCTA 58.277 33.333 0.00 0.00 38.32 3.93
4945 8618 8.691661 TTTTTAGAGATTCCAATATGGGCTAC 57.308 34.615 0.00 0.00 38.32 3.58
4946 8619 7.387265 TTTAGAGATTCCAATATGGGCTACA 57.613 36.000 0.00 0.00 38.32 2.74
4947 8620 7.574021 TTAGAGATTCCAATATGGGCTACAT 57.426 36.000 0.00 0.46 43.68 2.29
4948 8621 8.679344 TTAGAGATTCCAATATGGGCTACATA 57.321 34.615 0.00 4.54 45.60 2.29
4949 8622 6.951971 AGAGATTCCAATATGGGCTACATAC 58.048 40.000 0.00 0.00 44.41 2.39
4950 8623 6.732862 AGAGATTCCAATATGGGCTACATACT 59.267 38.462 0.00 0.00 44.41 2.12
4951 8624 6.715280 AGATTCCAATATGGGCTACATACTG 58.285 40.000 0.00 4.24 44.41 2.74
4952 8625 6.501805 AGATTCCAATATGGGCTACATACTGA 59.498 38.462 10.49 3.74 44.41 3.41
4953 8626 6.702449 TTCCAATATGGGCTACATACTGAT 57.298 37.500 10.49 0.00 44.41 2.90
4954 8627 6.053632 TCCAATATGGGCTACATACTGATG 57.946 41.667 10.49 5.86 44.41 3.07
4955 8628 5.547666 TCCAATATGGGCTACATACTGATGT 59.452 40.000 10.49 0.00 44.41 3.06
4956 8629 6.728632 TCCAATATGGGCTACATACTGATGTA 59.271 38.462 10.49 0.00 44.41 2.29
4957 8630 7.402941 TCCAATATGGGCTACATACTGATGTAT 59.597 37.037 10.49 0.00 44.41 2.29
4958 8631 8.704668 CCAATATGGGCTACATACTGATGTATA 58.295 37.037 10.49 0.00 44.41 1.47
4963 8636 8.521170 TGGGCTACATACTGATGTATATAGAC 57.479 38.462 5.89 3.11 45.42 2.59
4964 8637 7.282450 TGGGCTACATACTGATGTATATAGACG 59.718 40.741 5.89 0.00 42.33 4.18
4965 8638 7.282675 GGGCTACATACTGATGTATATAGACGT 59.717 40.741 5.89 0.00 42.33 4.34
4966 8639 9.322773 GGCTACATACTGATGTATATAGACGTA 57.677 37.037 5.89 0.00 45.42 3.57
4986 8659 8.189460 AGACGTATTTTAGAGTGTAGATTCACC 58.811 37.037 0.00 0.00 38.91 4.02
4987 8660 7.263496 ACGTATTTTAGAGTGTAGATTCACCC 58.737 38.462 0.00 0.00 38.91 4.61
4988 8661 7.093640 ACGTATTTTAGAGTGTAGATTCACCCA 60.094 37.037 0.00 0.00 38.91 4.51
4989 8662 7.926555 CGTATTTTAGAGTGTAGATTCACCCAT 59.073 37.037 0.00 0.00 38.91 4.00
4990 8663 9.614792 GTATTTTAGAGTGTAGATTCACCCATT 57.385 33.333 0.00 0.00 38.91 3.16
4992 8665 8.934023 TTTTAGAGTGTAGATTCACCCATTTT 57.066 30.769 0.00 0.00 38.91 1.82
4993 8666 7.921786 TTAGAGTGTAGATTCACCCATTTTG 57.078 36.000 0.00 0.00 38.91 2.44
4994 8667 4.702131 AGAGTGTAGATTCACCCATTTTGC 59.298 41.667 0.00 0.00 38.91 3.68
4995 8668 4.666512 AGTGTAGATTCACCCATTTTGCT 58.333 39.130 0.00 0.00 38.91 3.91
4996 8669 4.702131 AGTGTAGATTCACCCATTTTGCTC 59.298 41.667 0.00 0.00 38.91 4.26
4997 8670 4.702131 GTGTAGATTCACCCATTTTGCTCT 59.298 41.667 0.00 0.00 32.81 4.09
4998 8671 4.701651 TGTAGATTCACCCATTTTGCTCTG 59.298 41.667 0.00 0.00 0.00 3.35
4999 8672 3.771216 AGATTCACCCATTTTGCTCTGT 58.229 40.909 0.00 0.00 0.00 3.41
5000 8673 4.922206 AGATTCACCCATTTTGCTCTGTA 58.078 39.130 0.00 0.00 0.00 2.74
5001 8674 5.513233 AGATTCACCCATTTTGCTCTGTAT 58.487 37.500 0.00 0.00 0.00 2.29
5002 8675 5.359009 AGATTCACCCATTTTGCTCTGTATG 59.641 40.000 0.00 0.00 0.00 2.39
5003 8676 4.032960 TCACCCATTTTGCTCTGTATGT 57.967 40.909 0.00 0.00 0.00 2.29
5004 8677 5.172687 TCACCCATTTTGCTCTGTATGTA 57.827 39.130 0.00 0.00 0.00 2.29
5005 8678 5.185454 TCACCCATTTTGCTCTGTATGTAG 58.815 41.667 0.00 0.00 0.00 2.74
5006 8679 4.943705 CACCCATTTTGCTCTGTATGTAGT 59.056 41.667 0.00 0.00 0.00 2.73
5007 8680 5.065218 CACCCATTTTGCTCTGTATGTAGTC 59.935 44.000 0.00 0.00 0.00 2.59
5008 8681 4.576463 CCCATTTTGCTCTGTATGTAGTCC 59.424 45.833 0.00 0.00 0.00 3.85
5009 8682 5.185454 CCATTTTGCTCTGTATGTAGTCCA 58.815 41.667 0.00 0.00 0.00 4.02
5010 8683 5.824624 CCATTTTGCTCTGTATGTAGTCCAT 59.175 40.000 0.00 0.00 37.58 3.41
5011 8684 6.992123 CCATTTTGCTCTGTATGTAGTCCATA 59.008 38.462 0.00 0.00 34.86 2.74
5012 8685 7.663081 CCATTTTGCTCTGTATGTAGTCCATAT 59.337 37.037 0.00 0.00 38.29 1.78
5013 8686 9.060347 CATTTTGCTCTGTATGTAGTCCATATT 57.940 33.333 0.00 0.00 38.29 1.28
5014 8687 8.437360 TTTTGCTCTGTATGTAGTCCATATTG 57.563 34.615 0.00 0.00 38.29 1.90
5015 8688 6.101650 TGCTCTGTATGTAGTCCATATTGG 57.898 41.667 0.00 0.00 38.29 3.16
5016 8689 5.838521 TGCTCTGTATGTAGTCCATATTGGA 59.161 40.000 0.00 0.00 45.98 3.53
5049 8722 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
5050 8723 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5051 8724 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5052 8725 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
5053 8726 5.011840 ACTTATATTTAGGAACGGAGGGAGC 59.988 44.000 0.00 0.00 0.00 4.70
5054 8727 1.580059 ATTTAGGAACGGAGGGAGCA 58.420 50.000 0.00 0.00 0.00 4.26
5072 8745 4.310769 GAGCATGTATTAGTAGCTGGGTG 58.689 47.826 0.00 0.00 35.36 4.61
5083 8756 2.257353 GCTGGGTGCTGTAAGTTGG 58.743 57.895 0.00 0.00 38.95 3.77
5118 8928 3.000684 TGTCGACTAGTCCAGCAGTAT 57.999 47.619 17.92 0.00 0.00 2.12
5132 8942 7.728083 AGTCCAGCAGTATTCTAGATTAGTCAT 59.272 37.037 0.00 0.00 0.00 3.06
5227 9037 3.671410 TGTGGGGCTGGGATTGGG 61.671 66.667 0.00 0.00 0.00 4.12
5235 9045 1.068121 GCTGGGATTGGGCCTAGTAT 58.932 55.000 4.53 0.00 38.65 2.12
5299 9109 3.054287 TGGACTAAGGTTGTTTGGTGACA 60.054 43.478 0.00 0.00 39.83 3.58
5364 9174 6.542005 CCATCACACTAATAATACCACAAGCA 59.458 38.462 0.00 0.00 0.00 3.91
5367 9177 7.812648 TCACACTAATAATACCACAAGCAAAC 58.187 34.615 0.00 0.00 0.00 2.93
5442 9255 4.058817 CAACTACTGGTGGACTCAAGTTC 58.941 47.826 0.00 0.00 0.00 3.01
5718 9549 4.790140 CAGCTTGCTGATAAATTTGACGAC 59.210 41.667 16.78 0.00 0.00 4.34
6160 10001 1.496857 TGATTTGACCCACCCACTTCA 59.503 47.619 0.00 0.00 0.00 3.02
6223 10070 3.389329 TCTTCTGAGGGCATATGTTCTCC 59.611 47.826 18.25 10.13 0.00 3.71
6365 11637 7.599171 TGGGTTAAAATTGCTAAAGCTTAGAC 58.401 34.615 0.00 0.00 42.66 2.59
6570 11842 6.406692 TGCAAGTCCTCCAGTAAGTATATC 57.593 41.667 0.00 0.00 0.00 1.63
7296 12776 8.477419 TGGAAGAGAAAAATTGGTAGAAACAT 57.523 30.769 0.00 0.00 0.00 2.71
7550 13032 5.453198 GGAACCTTGAACATTTGAACCATGT 60.453 40.000 0.00 0.00 36.36 3.21
7552 13034 6.723298 ACCTTGAACATTTGAACCATGTTA 57.277 33.333 0.00 0.00 43.47 2.41
7943 13535 7.227512 GCACTGAGATGCTTTTAGGTTACATAT 59.772 37.037 0.00 0.00 42.62 1.78
8563 14409 0.475828 AAGTGTCCACCCCCTTAGCT 60.476 55.000 0.00 0.00 0.00 3.32
8565 14411 0.404426 GTGTCCACCCCCTTAGCTTT 59.596 55.000 0.00 0.00 0.00 3.51
8567 14413 0.323451 GTCCACCCCCTTAGCTTTGG 60.323 60.000 0.00 0.00 0.00 3.28
8568 14414 0.476808 TCCACCCCCTTAGCTTTGGA 60.477 55.000 0.00 0.00 0.00 3.53
8569 14415 0.407918 CCACCCCCTTAGCTTTGGAA 59.592 55.000 0.00 0.00 0.00 3.53
8570 14416 1.007118 CCACCCCCTTAGCTTTGGAAT 59.993 52.381 0.00 0.00 0.00 3.01
8571 14417 2.243736 CCACCCCCTTAGCTTTGGAATA 59.756 50.000 0.00 0.00 0.00 1.75
8572 14418 3.117131 CCACCCCCTTAGCTTTGGAATAT 60.117 47.826 0.00 0.00 0.00 1.28
8573 14419 4.105697 CCACCCCCTTAGCTTTGGAATATA 59.894 45.833 0.00 0.00 0.00 0.86
8574 14420 5.316987 CACCCCCTTAGCTTTGGAATATAG 58.683 45.833 0.00 0.00 0.00 1.31
8575 14421 4.202577 ACCCCCTTAGCTTTGGAATATAGC 60.203 45.833 0.00 0.00 35.16 2.97
8576 14422 4.202567 CCCCCTTAGCTTTGGAATATAGCA 60.203 45.833 0.00 0.00 37.37 3.49
8577 14423 4.762251 CCCCTTAGCTTTGGAATATAGCAC 59.238 45.833 0.00 0.00 37.37 4.40
8578 14424 5.456763 CCCCTTAGCTTTGGAATATAGCACT 60.457 44.000 0.00 0.00 37.37 4.40
8579 14425 6.239887 CCCCTTAGCTTTGGAATATAGCACTA 60.240 42.308 0.00 0.00 37.37 2.74
8580 14426 7.224297 CCCTTAGCTTTGGAATATAGCACTAA 58.776 38.462 0.00 0.00 37.37 2.24
8581 14427 7.719633 CCCTTAGCTTTGGAATATAGCACTAAA 59.280 37.037 0.00 0.00 37.37 1.85
8582 14428 9.120538 CCTTAGCTTTGGAATATAGCACTAAAA 57.879 33.333 0.00 0.00 37.37 1.52
8619 14465 8.488764 GGAATATCGTTTGCTTATGAGTTACTC 58.511 37.037 5.27 5.27 0.00 2.59
8620 14466 7.948278 ATATCGTTTGCTTATGAGTTACTCC 57.052 36.000 10.10 0.00 0.00 3.85
8622 14468 4.222145 TCGTTTGCTTATGAGTTACTCCCT 59.778 41.667 10.10 0.00 0.00 4.20
8623 14469 4.567159 CGTTTGCTTATGAGTTACTCCCTC 59.433 45.833 10.10 0.00 0.00 4.30
8624 14470 4.755266 TTGCTTATGAGTTACTCCCTCC 57.245 45.455 10.10 0.00 0.00 4.30
8626 14472 2.694109 GCTTATGAGTTACTCCCTCCGT 59.306 50.000 10.10 0.00 0.00 4.69
8627 14473 3.243468 GCTTATGAGTTACTCCCTCCGTC 60.243 52.174 10.10 0.00 0.00 4.79
8628 14474 1.777941 ATGAGTTACTCCCTCCGTCC 58.222 55.000 10.10 0.00 0.00 4.79
8629 14475 0.406750 TGAGTTACTCCCTCCGTCCA 59.593 55.000 10.10 0.00 0.00 4.02
8630 14476 1.203087 TGAGTTACTCCCTCCGTCCAA 60.203 52.381 10.10 0.00 0.00 3.53
8631 14477 1.897802 GAGTTACTCCCTCCGTCCAAA 59.102 52.381 0.00 0.00 0.00 3.28
8632 14478 2.301009 GAGTTACTCCCTCCGTCCAAAA 59.699 50.000 0.00 0.00 0.00 2.44
8633 14479 2.707257 AGTTACTCCCTCCGTCCAAAAA 59.293 45.455 0.00 0.00 0.00 1.94
8634 14480 3.329814 AGTTACTCCCTCCGTCCAAAAAT 59.670 43.478 0.00 0.00 0.00 1.82
8635 14481 4.533311 AGTTACTCCCTCCGTCCAAAAATA 59.467 41.667 0.00 0.00 0.00 1.40
8636 14482 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
8637 14483 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
8638 14484 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
8639 14485 3.681593 TCCCTCCGTCCAAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
8640 14486 3.073356 TCCCTCCGTCCAAAAATACTTGT 59.927 43.478 0.00 0.00 0.00 3.16
8641 14487 3.439129 CCCTCCGTCCAAAAATACTTGTC 59.561 47.826 0.00 0.00 0.00 3.18
8642 14488 4.069304 CCTCCGTCCAAAAATACTTGTCA 58.931 43.478 0.00 0.00 0.00 3.58
8643 14489 4.700213 CCTCCGTCCAAAAATACTTGTCAT 59.300 41.667 0.00 0.00 0.00 3.06
8644 14490 5.163754 CCTCCGTCCAAAAATACTTGTCATC 60.164 44.000 0.00 0.00 0.00 2.92
8645 14491 5.309638 TCCGTCCAAAAATACTTGTCATCA 58.690 37.500 0.00 0.00 0.00 3.07
8646 14492 5.765677 TCCGTCCAAAAATACTTGTCATCAA 59.234 36.000 0.00 0.00 0.00 2.57
8647 14493 6.263392 TCCGTCCAAAAATACTTGTCATCAAA 59.737 34.615 0.00 0.00 32.87 2.69
8648 14494 6.920758 CCGTCCAAAAATACTTGTCATCAAAA 59.079 34.615 0.00 0.00 32.87 2.44
8649 14495 7.598493 CCGTCCAAAAATACTTGTCATCAAAAT 59.402 33.333 0.00 0.00 32.87 1.82
8650 14496 8.427012 CGTCCAAAAATACTTGTCATCAAAATG 58.573 33.333 0.00 0.00 32.87 2.32
8651 14497 8.711457 GTCCAAAAATACTTGTCATCAAAATGG 58.289 33.333 0.00 0.00 33.42 3.16
8652 14498 8.646004 TCCAAAAATACTTGTCATCAAAATGGA 58.354 29.630 0.00 0.00 33.42 3.41
8653 14499 9.439500 CCAAAAATACTTGTCATCAAAATGGAT 57.561 29.630 0.00 0.00 33.42 3.41
8661 14507 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
8717 14563 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
8718 14564 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
8719 14565 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
8720 14566 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
8721 14567 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
8722 14568 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
8728 14574 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
8729 14575 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
8730 14576 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
8731 14577 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
8732 14578 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
8733 14579 4.811908 TGATGACAAGTATTTTCGGACGA 58.188 39.130 0.00 0.00 0.00 4.20
8734 14580 5.231702 TGATGACAAGTATTTTCGGACGAA 58.768 37.500 2.62 2.62 0.00 3.85
8735 14581 5.347635 TGATGACAAGTATTTTCGGACGAAG 59.652 40.000 7.25 0.00 35.38 3.79
8736 14582 3.991773 TGACAAGTATTTTCGGACGAAGG 59.008 43.478 7.25 0.00 35.38 3.46
8737 14583 3.332034 ACAAGTATTTTCGGACGAAGGG 58.668 45.455 7.25 0.00 35.38 3.95
8738 14584 3.007182 ACAAGTATTTTCGGACGAAGGGA 59.993 43.478 7.25 0.00 35.38 4.20
8739 14585 3.521947 AGTATTTTCGGACGAAGGGAG 57.478 47.619 7.25 0.00 35.38 4.30
8740 14586 2.830321 AGTATTTTCGGACGAAGGGAGT 59.170 45.455 7.25 0.00 35.38 3.85
8741 14587 4.019174 AGTATTTTCGGACGAAGGGAGTA 58.981 43.478 7.25 0.00 35.38 2.59
8742 14588 2.730550 TTTTCGGACGAAGGGAGTAC 57.269 50.000 7.25 0.00 35.38 2.73
8743 14589 1.915141 TTTCGGACGAAGGGAGTACT 58.085 50.000 7.25 0.00 35.38 2.73
8749 14595 3.679917 CGGACGAAGGGAGTACTAGTACA 60.680 52.174 29.87 0.00 38.48 2.90
8750 14596 3.625313 GGACGAAGGGAGTACTAGTACAC 59.375 52.174 29.87 24.39 38.48 2.90
8940 14787 5.525378 GTGCTACTAATCAAGTAATGCTGCT 59.475 40.000 0.00 0.00 40.21 4.24
9006 14855 9.495572 CTACATTTCAAAGATAGGAATAGACCC 57.504 37.037 0.00 0.00 0.00 4.46
9012 14890 8.618240 TCAAAGATAGGAATAGACCCTGTTTA 57.382 34.615 0.00 0.00 35.30 2.01
9013 14891 9.053472 TCAAAGATAGGAATAGACCCTGTTTAA 57.947 33.333 0.00 0.00 35.30 1.52
9017 14895 9.398921 AGATAGGAATAGACCCTGTTTAATGAT 57.601 33.333 0.00 0.00 35.30 2.45
9030 14908 9.197694 CCCTGTTTAATGATTAATCTCTACTCG 57.802 37.037 16.24 0.22 0.00 4.18
9039 14917 9.693739 ATGATTAATCTCTACTCGTAGGATCAT 57.306 33.333 16.24 0.00 34.06 2.45
9044 14922 4.757657 TCTCTACTCGTAGGATCATTGAGC 59.242 45.833 8.65 0.00 34.06 4.26
9046 14924 4.887655 TCTACTCGTAGGATCATTGAGCAA 59.112 41.667 4.07 0.00 34.06 3.91
9106 14984 6.534634 ACTTGCCGATTAGCCTATTAATCTT 58.465 36.000 0.00 0.00 37.72 2.40
9113 14991 8.192110 CCGATTAGCCTATTAATCTTCTACTCC 58.808 40.741 0.00 0.00 37.72 3.85
9115 14993 5.986501 AGCCTATTAATCTTCTACTCCCG 57.013 43.478 0.00 0.00 0.00 5.14
9117 14995 6.257586 AGCCTATTAATCTTCTACTCCCGAT 58.742 40.000 0.00 0.00 0.00 4.18
9118 14996 7.411808 AGCCTATTAATCTTCTACTCCCGATA 58.588 38.462 0.00 0.00 0.00 2.92
9119 14997 7.894364 AGCCTATTAATCTTCTACTCCCGATAA 59.106 37.037 0.00 0.00 0.00 1.75
9121 14999 9.857957 CCTATTAATCTTCTACTCCCGATAAAC 57.142 37.037 0.00 0.00 0.00 2.01
9123 15001 7.664552 TTAATCTTCTACTCCCGATAAACCA 57.335 36.000 0.00 0.00 0.00 3.67
9126 15004 6.555463 TCTTCTACTCCCGATAAACCAATT 57.445 37.500 0.00 0.00 0.00 2.32
9127 15005 7.664552 TCTTCTACTCCCGATAAACCAATTA 57.335 36.000 0.00 0.00 0.00 1.40
9129 15007 8.711170 TCTTCTACTCCCGATAAACCAATTAAT 58.289 33.333 0.00 0.00 0.00 1.40
9131 15009 8.671384 TCTACTCCCGATAAACCAATTAATTG 57.329 34.615 19.40 19.40 37.52 2.32
9132 15010 8.269317 TCTACTCCCGATAAACCAATTAATTGT 58.731 33.333 23.24 10.41 36.06 2.71
9133 15011 7.712204 ACTCCCGATAAACCAATTAATTGTT 57.288 32.000 23.24 15.58 36.06 2.83
9134 15012 8.129496 ACTCCCGATAAACCAATTAATTGTTT 57.871 30.769 23.24 22.21 36.06 2.83
9135 15013 8.032451 ACTCCCGATAAACCAATTAATTGTTTG 58.968 33.333 23.24 12.80 36.06 2.93
9136 15014 8.123639 TCCCGATAAACCAATTAATTGTTTGA 57.876 30.769 23.24 11.88 36.06 2.69
9171 15056 9.515226 TTAATTTGCCGATTAGCCTATTAATCT 57.485 29.630 0.00 0.00 37.72 2.40
9176 15061 8.079211 TGCCGATTAGCCTATTAATCTTCTAT 57.921 34.615 0.00 0.00 37.72 1.98
9178 15063 9.384764 GCCGATTAGCCTATTAATCTTCTATTT 57.615 33.333 0.00 0.00 37.72 1.40
9189 15074 8.986929 ATTAATCTTCTATTTGCTAGCCAACT 57.013 30.769 13.29 3.88 31.97 3.16
9191 15076 4.517285 TCTTCTATTTGCTAGCCAACTGG 58.483 43.478 13.29 3.64 31.97 4.00
9195 15080 3.669939 ATTTGCTAGCCAACTGGGTAT 57.330 42.857 13.29 0.00 45.92 2.73
9196 15081 2.418368 TTGCTAGCCAACTGGGTATG 57.582 50.000 13.29 4.58 45.92 2.39
9197 15082 1.578897 TGCTAGCCAACTGGGTATGA 58.421 50.000 13.29 0.00 45.92 2.15
9198 15083 1.486310 TGCTAGCCAACTGGGTATGAG 59.514 52.381 13.29 0.49 45.92 2.90
9209 15094 6.408092 CCAACTGGGTATGAGCTAATGACTAA 60.408 42.308 0.00 0.00 0.00 2.24
9254 15140 8.882415 TTAACCTATTAATCTCCTAAACGCTG 57.118 34.615 0.00 0.00 0.00 5.18
9261 15147 1.001633 TCTCCTAAACGCTGTCCAACC 59.998 52.381 0.00 0.00 0.00 3.77
9271 15157 2.738643 CGCTGTCCAACCGATTAGTCAT 60.739 50.000 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.954452 GCTCCCTCGGCAAAATATGG 59.046 55.000 0.00 0.00 0.00 2.74
1 2 1.605710 CTGCTCCCTCGGCAAAATATG 59.394 52.381 0.00 0.00 39.30 1.78
2 3 1.972872 CTGCTCCCTCGGCAAAATAT 58.027 50.000 0.00 0.00 39.30 1.28
3 4 0.748005 GCTGCTCCCTCGGCAAAATA 60.748 55.000 0.00 0.00 39.30 1.40
4 5 2.048603 GCTGCTCCCTCGGCAAAAT 61.049 57.895 0.00 0.00 39.30 1.82
5 6 2.672996 GCTGCTCCCTCGGCAAAA 60.673 61.111 0.00 0.00 39.30 2.44
6 7 3.952508 TGCTGCTCCCTCGGCAAA 61.953 61.111 0.00 0.00 44.57 3.68
26 27 3.813724 GCCCCTGATGGACCCCAG 61.814 72.222 4.46 4.46 36.75 4.45
27 28 3.988151 ATGCCCCTGATGGACCCCA 62.988 63.158 0.00 0.00 38.19 4.96
28 29 3.105928 ATGCCCCTGATGGACCCC 61.106 66.667 0.00 0.00 35.39 4.95
29 30 2.196776 CATGCCCCTGATGGACCC 59.803 66.667 0.00 0.00 35.39 4.46
30 31 2.196776 CCATGCCCCTGATGGACC 59.803 66.667 0.00 0.00 42.81 4.46
31 32 1.723128 ATCCCATGCCCCTGATGGAC 61.723 60.000 1.63 0.00 42.81 4.02
32 33 1.387781 ATCCCATGCCCCTGATGGA 60.388 57.895 1.63 0.00 42.81 3.41
33 34 1.228769 CATCCCATGCCCCTGATGG 60.229 63.158 0.00 0.00 40.25 3.51
34 35 4.513777 CATCCCATGCCCCTGATG 57.486 61.111 0.00 0.00 0.00 3.07
46 47 1.494960 TTAAAATGGCAGGGCATCCC 58.505 50.000 8.89 0.00 45.90 3.85
47 48 2.501316 AGTTTAAAATGGCAGGGCATCC 59.499 45.455 8.89 0.00 0.00 3.51
48 49 3.893326 AGTTTAAAATGGCAGGGCATC 57.107 42.857 8.89 0.00 0.00 3.91
49 50 5.673514 CATAAGTTTAAAATGGCAGGGCAT 58.326 37.500 2.07 2.07 0.00 4.40
50 51 4.622695 GCATAAGTTTAAAATGGCAGGGCA 60.623 41.667 0.00 0.00 0.00 5.36
51 52 3.871006 GCATAAGTTTAAAATGGCAGGGC 59.129 43.478 0.00 0.00 0.00 5.19
52 53 4.162131 AGGCATAAGTTTAAAATGGCAGGG 59.838 41.667 20.61 0.00 45.71 4.45
53 54 5.343307 AGGCATAAGTTTAAAATGGCAGG 57.657 39.130 20.61 1.56 45.71 4.85
54 55 7.100458 ACTAGGCATAAGTTTAAAATGGCAG 57.900 36.000 20.61 17.50 45.71 4.85
55 56 8.050325 TCTACTAGGCATAAGTTTAAAATGGCA 58.950 33.333 20.61 10.22 45.71 4.92
56 57 8.446599 TCTACTAGGCATAAGTTTAAAATGGC 57.553 34.615 14.07 14.07 44.17 4.40
66 67 8.474025 GCAGATCATAATCTACTAGGCATAAGT 58.526 37.037 0.00 0.00 40.38 2.24
67 68 7.925483 GGCAGATCATAATCTACTAGGCATAAG 59.075 40.741 0.00 0.00 40.38 1.73
68 69 7.621285 AGGCAGATCATAATCTACTAGGCATAA 59.379 37.037 0.00 0.00 40.38 1.90
69 70 7.069208 CAGGCAGATCATAATCTACTAGGCATA 59.931 40.741 0.00 0.00 40.38 3.14
70 71 5.963253 AGGCAGATCATAATCTACTAGGCAT 59.037 40.000 0.00 0.00 40.38 4.40
71 72 5.186603 CAGGCAGATCATAATCTACTAGGCA 59.813 44.000 0.00 0.00 40.38 4.75
72 73 5.186797 ACAGGCAGATCATAATCTACTAGGC 59.813 44.000 0.00 0.00 40.38 3.93
73 74 6.849085 ACAGGCAGATCATAATCTACTAGG 57.151 41.667 0.00 0.00 40.38 3.02
74 75 8.121305 AGAACAGGCAGATCATAATCTACTAG 57.879 38.462 0.00 0.00 40.38 2.57
75 76 8.484214 AAGAACAGGCAGATCATAATCTACTA 57.516 34.615 0.00 0.00 40.38 1.82
76 77 6.992664 AGAACAGGCAGATCATAATCTACT 57.007 37.500 0.00 0.00 40.38 2.57
77 78 7.519649 GCAAAGAACAGGCAGATCATAATCTAC 60.520 40.741 0.00 0.00 40.38 2.59
78 79 6.484643 GCAAAGAACAGGCAGATCATAATCTA 59.515 38.462 0.00 0.00 40.38 1.98
79 80 5.298777 GCAAAGAACAGGCAGATCATAATCT 59.701 40.000 0.00 0.00 43.24 2.40
80 81 5.298777 AGCAAAGAACAGGCAGATCATAATC 59.701 40.000 0.00 0.00 0.00 1.75
81 82 5.198965 AGCAAAGAACAGGCAGATCATAAT 58.801 37.500 0.00 0.00 0.00 1.28
82 83 4.592942 AGCAAAGAACAGGCAGATCATAA 58.407 39.130 0.00 0.00 0.00 1.90
83 84 4.226427 AGCAAAGAACAGGCAGATCATA 57.774 40.909 0.00 0.00 0.00 2.15
84 85 3.083122 AGCAAAGAACAGGCAGATCAT 57.917 42.857 0.00 0.00 0.00 2.45
85 86 2.555325 CAAGCAAAGAACAGGCAGATCA 59.445 45.455 0.00 0.00 0.00 2.92
86 87 2.555757 ACAAGCAAAGAACAGGCAGATC 59.444 45.455 0.00 0.00 0.00 2.75
87 88 2.590821 ACAAGCAAAGAACAGGCAGAT 58.409 42.857 0.00 0.00 0.00 2.90
88 89 2.057137 ACAAGCAAAGAACAGGCAGA 57.943 45.000 0.00 0.00 0.00 4.26
89 90 2.360165 AGAACAAGCAAAGAACAGGCAG 59.640 45.455 0.00 0.00 0.00 4.85
90 91 2.378038 AGAACAAGCAAAGAACAGGCA 58.622 42.857 0.00 0.00 0.00 4.75
91 92 3.118542 CAAGAACAAGCAAAGAACAGGC 58.881 45.455 0.00 0.00 0.00 4.85
92 93 3.118542 GCAAGAACAAGCAAAGAACAGG 58.881 45.455 0.00 0.00 0.00 4.00
93 94 3.795101 CAGCAAGAACAAGCAAAGAACAG 59.205 43.478 0.00 0.00 0.00 3.16
94 95 3.193267 ACAGCAAGAACAAGCAAAGAACA 59.807 39.130 0.00 0.00 0.00 3.18
95 96 3.774066 ACAGCAAGAACAAGCAAAGAAC 58.226 40.909 0.00 0.00 0.00 3.01
96 97 4.454728 AACAGCAAGAACAAGCAAAGAA 57.545 36.364 0.00 0.00 0.00 2.52
97 98 4.454728 AAACAGCAAGAACAAGCAAAGA 57.545 36.364 0.00 0.00 0.00 2.52
98 99 5.106987 ACAAAAACAGCAAGAACAAGCAAAG 60.107 36.000 0.00 0.00 0.00 2.77
99 100 4.754114 ACAAAAACAGCAAGAACAAGCAAA 59.246 33.333 0.00 0.00 0.00 3.68
100 101 4.152045 CACAAAAACAGCAAGAACAAGCAA 59.848 37.500 0.00 0.00 0.00 3.91
101 102 3.679025 CACAAAAACAGCAAGAACAAGCA 59.321 39.130 0.00 0.00 0.00 3.91
102 103 3.679502 ACACAAAAACAGCAAGAACAAGC 59.320 39.130 0.00 0.00 0.00 4.01
103 104 5.610975 CAACACAAAAACAGCAAGAACAAG 58.389 37.500 0.00 0.00 0.00 3.16
104 105 4.084118 GCAACACAAAAACAGCAAGAACAA 60.084 37.500 0.00 0.00 0.00 2.83
105 106 3.431572 GCAACACAAAAACAGCAAGAACA 59.568 39.130 0.00 0.00 0.00 3.18
106 107 3.679502 AGCAACACAAAAACAGCAAGAAC 59.320 39.130 0.00 0.00 0.00 3.01
107 108 3.679025 CAGCAACACAAAAACAGCAAGAA 59.321 39.130 0.00 0.00 0.00 2.52
108 109 3.056962 TCAGCAACACAAAAACAGCAAGA 60.057 39.130 0.00 0.00 0.00 3.02
109 110 3.252400 TCAGCAACACAAAAACAGCAAG 58.748 40.909 0.00 0.00 0.00 4.01
110 111 3.309961 TCAGCAACACAAAAACAGCAA 57.690 38.095 0.00 0.00 0.00 3.91
111 112 3.119209 TCATCAGCAACACAAAAACAGCA 60.119 39.130 0.00 0.00 0.00 4.41
112 113 3.446799 TCATCAGCAACACAAAAACAGC 58.553 40.909 0.00 0.00 0.00 4.40
113 114 5.283294 TGATCATCAGCAACACAAAAACAG 58.717 37.500 0.00 0.00 0.00 3.16
114 115 5.259832 TGATCATCAGCAACACAAAAACA 57.740 34.783 0.00 0.00 0.00 2.83
115 116 7.061441 CACTATGATCATCAGCAACACAAAAAC 59.939 37.037 12.53 0.00 0.00 2.43
116 117 7.085746 CACTATGATCATCAGCAACACAAAAA 58.914 34.615 12.53 0.00 0.00 1.94
117 118 6.207221 ACACTATGATCATCAGCAACACAAAA 59.793 34.615 12.53 0.00 0.00 2.44
118 119 5.706833 ACACTATGATCATCAGCAACACAAA 59.293 36.000 12.53 0.00 0.00 2.83
119 120 5.122711 CACACTATGATCATCAGCAACACAA 59.877 40.000 12.53 0.00 0.00 3.33
120 121 4.632688 CACACTATGATCATCAGCAACACA 59.367 41.667 12.53 0.00 0.00 3.72
121 122 4.633126 ACACACTATGATCATCAGCAACAC 59.367 41.667 12.53 0.00 0.00 3.32
122 123 4.835678 ACACACTATGATCATCAGCAACA 58.164 39.130 12.53 0.00 0.00 3.33
123 124 5.122869 ACAACACACTATGATCATCAGCAAC 59.877 40.000 12.53 0.00 0.00 4.17
124 125 5.122711 CACAACACACTATGATCATCAGCAA 59.877 40.000 12.53 0.00 0.00 3.91
125 126 4.632688 CACAACACACTATGATCATCAGCA 59.367 41.667 12.53 0.00 0.00 4.41
126 127 4.633126 ACACAACACACTATGATCATCAGC 59.367 41.667 12.53 0.00 0.00 4.26
127 128 5.446875 GCACACAACACACTATGATCATCAG 60.447 44.000 12.53 10.50 0.00 2.90
128 129 4.392754 GCACACAACACACTATGATCATCA 59.607 41.667 12.53 0.00 0.00 3.07
129 130 4.633126 AGCACACAACACACTATGATCATC 59.367 41.667 12.53 0.00 0.00 2.92
130 131 4.393990 CAGCACACAACACACTATGATCAT 59.606 41.667 13.81 13.81 0.00 2.45
131 132 3.747529 CAGCACACAACACACTATGATCA 59.252 43.478 0.00 0.00 0.00 2.92
132 133 3.748048 ACAGCACACAACACACTATGATC 59.252 43.478 0.00 0.00 0.00 2.92
133 134 3.743521 ACAGCACACAACACACTATGAT 58.256 40.909 0.00 0.00 0.00 2.45
134 135 3.130633 GACAGCACACAACACACTATGA 58.869 45.455 0.00 0.00 0.00 2.15
135 136 2.871633 TGACAGCACACAACACACTATG 59.128 45.455 0.00 0.00 0.00 2.23
136 137 3.192541 TGACAGCACACAACACACTAT 57.807 42.857 0.00 0.00 0.00 2.12
137 138 2.682155 TGACAGCACACAACACACTA 57.318 45.000 0.00 0.00 0.00 2.74
138 139 1.819928 TTGACAGCACACAACACACT 58.180 45.000 0.00 0.00 0.00 3.55
139 140 2.627863 TTTGACAGCACACAACACAC 57.372 45.000 0.00 0.00 0.00 3.82
140 141 2.159268 CCATTTGACAGCACACAACACA 60.159 45.455 0.00 0.00 0.00 3.72
141 142 2.462889 CCATTTGACAGCACACAACAC 58.537 47.619 0.00 0.00 0.00 3.32
142 143 1.408340 CCCATTTGACAGCACACAACA 59.592 47.619 0.00 0.00 0.00 3.33
143 144 1.408702 ACCCATTTGACAGCACACAAC 59.591 47.619 0.00 0.00 0.00 3.32
144 145 1.408340 CACCCATTTGACAGCACACAA 59.592 47.619 0.00 0.00 0.00 3.33
145 146 1.031235 CACCCATTTGACAGCACACA 58.969 50.000 0.00 0.00 0.00 3.72
146 147 0.314935 CCACCCATTTGACAGCACAC 59.685 55.000 0.00 0.00 0.00 3.82
147 148 0.106268 ACCACCCATTTGACAGCACA 60.106 50.000 0.00 0.00 0.00 4.57
148 149 1.904287 TACCACCCATTTGACAGCAC 58.096 50.000 0.00 0.00 0.00 4.40
149 150 2.158534 AGTTACCACCCATTTGACAGCA 60.159 45.455 0.00 0.00 0.00 4.41
150 151 2.488153 GAGTTACCACCCATTTGACAGC 59.512 50.000 0.00 0.00 0.00 4.40
151 152 3.081804 GGAGTTACCACCCATTTGACAG 58.918 50.000 0.00 0.00 38.79 3.51
152 153 2.443632 TGGAGTTACCACCCATTTGACA 59.556 45.455 0.00 0.00 44.64 3.58
153 154 3.149005 TGGAGTTACCACCCATTTGAC 57.851 47.619 0.00 0.00 44.64 3.18
164 165 4.825085 TCTTTCAAATGTGGTGGAGTTACC 59.175 41.667 0.00 0.00 41.24 2.85
165 166 5.763204 TCTCTTTCAAATGTGGTGGAGTTAC 59.237 40.000 0.00 0.00 0.00 2.50
166 167 5.935945 TCTCTTTCAAATGTGGTGGAGTTA 58.064 37.500 0.00 0.00 0.00 2.24
167 168 4.792068 TCTCTTTCAAATGTGGTGGAGTT 58.208 39.130 0.00 0.00 0.00 3.01
168 169 4.437682 TCTCTTTCAAATGTGGTGGAGT 57.562 40.909 0.00 0.00 0.00 3.85
169 170 5.005740 TCATCTCTTTCAAATGTGGTGGAG 58.994 41.667 0.00 0.00 0.00 3.86
170 171 4.984295 TCATCTCTTTCAAATGTGGTGGA 58.016 39.130 0.00 0.00 0.00 4.02
171 172 4.380233 GCTCATCTCTTTCAAATGTGGTGG 60.380 45.833 0.00 0.00 0.00 4.61
172 173 4.216902 TGCTCATCTCTTTCAAATGTGGTG 59.783 41.667 0.00 0.00 0.00 4.17
173 174 4.401022 TGCTCATCTCTTTCAAATGTGGT 58.599 39.130 0.00 0.00 0.00 4.16
174 175 4.698780 TCTGCTCATCTCTTTCAAATGTGG 59.301 41.667 0.00 0.00 0.00 4.17
175 176 5.874895 TCTGCTCATCTCTTTCAAATGTG 57.125 39.130 0.00 0.00 0.00 3.21
176 177 8.571461 TTAATCTGCTCATCTCTTTCAAATGT 57.429 30.769 0.00 0.00 0.00 2.71
177 178 8.675504 ACTTAATCTGCTCATCTCTTTCAAATG 58.324 33.333 0.00 0.00 0.00 2.32
178 179 8.804912 ACTTAATCTGCTCATCTCTTTCAAAT 57.195 30.769 0.00 0.00 0.00 2.32
179 180 9.155975 GTACTTAATCTGCTCATCTCTTTCAAA 57.844 33.333 0.00 0.00 0.00 2.69
180 181 8.535335 AGTACTTAATCTGCTCATCTCTTTCAA 58.465 33.333 0.00 0.00 0.00 2.69
181 182 8.072321 AGTACTTAATCTGCTCATCTCTTTCA 57.928 34.615 0.00 0.00 0.00 2.69
182 183 8.816144 CAAGTACTTAATCTGCTCATCTCTTTC 58.184 37.037 8.04 0.00 0.00 2.62
183 184 7.279758 GCAAGTACTTAATCTGCTCATCTCTTT 59.720 37.037 8.04 0.00 0.00 2.52
184 185 6.760770 GCAAGTACTTAATCTGCTCATCTCTT 59.239 38.462 8.04 0.00 0.00 2.85
185 186 6.127225 TGCAAGTACTTAATCTGCTCATCTCT 60.127 38.462 15.52 0.00 0.00 3.10
186 187 6.019156 GTGCAAGTACTTAATCTGCTCATCTC 60.019 42.308 15.52 0.02 0.00 2.75
187 188 5.814705 GTGCAAGTACTTAATCTGCTCATCT 59.185 40.000 15.52 0.00 0.00 2.90
188 189 5.582269 TGTGCAAGTACTTAATCTGCTCATC 59.418 40.000 15.52 6.41 0.00 2.92
189 190 5.352569 GTGTGCAAGTACTTAATCTGCTCAT 59.647 40.000 18.81 0.00 0.00 2.90
190 191 4.690748 GTGTGCAAGTACTTAATCTGCTCA 59.309 41.667 15.52 14.83 0.00 4.26
191 192 4.690748 TGTGTGCAAGTACTTAATCTGCTC 59.309 41.667 15.52 12.81 0.00 4.26
192 193 4.641396 TGTGTGCAAGTACTTAATCTGCT 58.359 39.130 15.52 0.00 0.00 4.24
193 194 5.147162 GTTGTGTGCAAGTACTTAATCTGC 58.853 41.667 8.04 8.68 34.94 4.26
194 195 5.238432 TGGTTGTGTGCAAGTACTTAATCTG 59.762 40.000 8.04 0.00 34.94 2.90
195 196 5.373222 TGGTTGTGTGCAAGTACTTAATCT 58.627 37.500 8.04 0.00 34.94 2.40
196 197 5.682943 TGGTTGTGTGCAAGTACTTAATC 57.317 39.130 8.04 0.00 34.94 1.75
197 198 6.127591 TGTTTGGTTGTGTGCAAGTACTTAAT 60.128 34.615 8.04 0.00 34.94 1.40
198 199 5.183331 TGTTTGGTTGTGTGCAAGTACTTAA 59.817 36.000 8.04 0.00 34.94 1.85
199 200 4.700692 TGTTTGGTTGTGTGCAAGTACTTA 59.299 37.500 8.04 0.00 34.94 2.24
200 201 3.508012 TGTTTGGTTGTGTGCAAGTACTT 59.492 39.130 1.12 1.12 34.94 2.24
201 202 3.085533 TGTTTGGTTGTGTGCAAGTACT 58.914 40.909 0.00 0.00 34.94 2.73
202 203 3.495670 TGTTTGGTTGTGTGCAAGTAC 57.504 42.857 0.00 0.00 34.94 2.73
203 204 3.508012 AGTTGTTTGGTTGTGTGCAAGTA 59.492 39.130 0.00 0.00 34.94 2.24
204 205 2.298729 AGTTGTTTGGTTGTGTGCAAGT 59.701 40.909 0.00 0.00 34.94 3.16
205 206 2.667481 CAGTTGTTTGGTTGTGTGCAAG 59.333 45.455 0.00 0.00 34.94 4.01
206 207 2.036475 ACAGTTGTTTGGTTGTGTGCAA 59.964 40.909 0.00 0.00 0.00 4.08
207 208 1.615883 ACAGTTGTTTGGTTGTGTGCA 59.384 42.857 0.00 0.00 0.00 4.57
208 209 1.991965 CACAGTTGTTTGGTTGTGTGC 59.008 47.619 0.00 0.00 36.92 4.57
209 210 1.991965 GCACAGTTGTTTGGTTGTGTG 59.008 47.619 5.50 0.00 42.13 3.82
210 211 1.892474 AGCACAGTTGTTTGGTTGTGT 59.108 42.857 5.50 0.00 42.13 3.72
211 212 2.652941 AGCACAGTTGTTTGGTTGTG 57.347 45.000 0.00 0.00 42.80 3.33
212 213 3.324993 CAAAGCACAGTTGTTTGGTTGT 58.675 40.909 0.00 0.00 33.81 3.32
213 214 2.094099 GCAAAGCACAGTTGTTTGGTTG 59.906 45.455 6.54 0.00 33.81 3.77
214 215 2.289320 TGCAAAGCACAGTTGTTTGGTT 60.289 40.909 6.54 0.00 34.97 3.67
215 216 1.274728 TGCAAAGCACAGTTGTTTGGT 59.725 42.857 6.54 0.00 31.71 3.67
216 217 2.007360 TGCAAAGCACAGTTGTTTGG 57.993 45.000 6.54 0.00 31.71 3.28
217 218 3.244345 CAGATGCAAAGCACAGTTGTTTG 59.756 43.478 0.00 1.32 43.04 2.93
218 219 3.450578 CAGATGCAAAGCACAGTTGTTT 58.549 40.909 0.00 0.00 43.04 2.83
219 220 2.800629 GCAGATGCAAAGCACAGTTGTT 60.801 45.455 0.00 0.00 43.04 2.83
220 221 1.269413 GCAGATGCAAAGCACAGTTGT 60.269 47.619 0.00 0.00 43.04 3.32
221 222 1.000607 AGCAGATGCAAAGCACAGTTG 60.001 47.619 7.68 0.00 43.04 3.16
222 223 1.268899 GAGCAGATGCAAAGCACAGTT 59.731 47.619 7.68 0.00 43.04 3.16
223 224 0.879765 GAGCAGATGCAAAGCACAGT 59.120 50.000 7.68 0.00 43.04 3.55
224 225 0.879090 TGAGCAGATGCAAAGCACAG 59.121 50.000 7.68 0.00 43.04 3.66
225 226 0.594602 GTGAGCAGATGCAAAGCACA 59.405 50.000 7.68 7.58 43.04 4.57
226 227 0.594602 TGTGAGCAGATGCAAAGCAC 59.405 50.000 7.68 9.71 43.04 4.40
227 228 0.594602 GTGTGAGCAGATGCAAAGCA 59.405 50.000 7.68 0.00 45.16 3.91
228 229 0.109412 GGTGTGAGCAGATGCAAAGC 60.109 55.000 7.68 0.00 45.16 3.51
229 230 1.531423 AGGTGTGAGCAGATGCAAAG 58.469 50.000 7.68 0.00 45.16 2.77
230 231 2.857186 TAGGTGTGAGCAGATGCAAA 57.143 45.000 7.68 0.00 45.16 3.68
231 232 2.857186 TTAGGTGTGAGCAGATGCAA 57.143 45.000 7.68 0.00 45.16 4.08
232 233 2.703416 CTTTAGGTGTGAGCAGATGCA 58.297 47.619 7.68 0.00 45.16 3.96
233 234 1.399791 GCTTTAGGTGTGAGCAGATGC 59.600 52.381 0.00 0.00 42.49 3.91
234 235 1.662629 CGCTTTAGGTGTGAGCAGATG 59.337 52.381 0.00 0.00 36.22 2.90
235 236 2.009042 GCGCTTTAGGTGTGAGCAGAT 61.009 52.381 0.00 0.00 36.22 2.90
236 237 0.670546 GCGCTTTAGGTGTGAGCAGA 60.671 55.000 0.00 0.00 36.22 4.26
237 238 0.950555 TGCGCTTTAGGTGTGAGCAG 60.951 55.000 9.73 0.00 36.22 4.24
238 239 0.533978 TTGCGCTTTAGGTGTGAGCA 60.534 50.000 9.73 0.00 36.22 4.26
239 240 0.591170 TTTGCGCTTTAGGTGTGAGC 59.409 50.000 9.73 0.00 0.00 4.26
240 241 1.601903 TGTTTGCGCTTTAGGTGTGAG 59.398 47.619 9.73 0.00 0.00 3.51
241 242 1.332375 GTGTTTGCGCTTTAGGTGTGA 59.668 47.619 9.73 0.00 0.00 3.58
242 243 1.064803 TGTGTTTGCGCTTTAGGTGTG 59.935 47.619 9.73 0.00 0.00 3.82
243 244 1.333619 CTGTGTTTGCGCTTTAGGTGT 59.666 47.619 9.73 0.00 0.00 4.16
244 245 1.334960 CCTGTGTTTGCGCTTTAGGTG 60.335 52.381 9.73 0.00 0.00 4.00
245 246 0.951558 CCTGTGTTTGCGCTTTAGGT 59.048 50.000 9.73 0.00 0.00 3.08
246 247 0.387239 GCCTGTGTTTGCGCTTTAGG 60.387 55.000 9.73 8.99 0.00 2.69
247 248 0.310543 TGCCTGTGTTTGCGCTTTAG 59.689 50.000 9.73 0.00 0.00 1.85
248 249 0.741326 TTGCCTGTGTTTGCGCTTTA 59.259 45.000 9.73 0.00 0.00 1.85
249 250 0.805711 GTTGCCTGTGTTTGCGCTTT 60.806 50.000 9.73 0.00 0.00 3.51
250 251 1.226945 GTTGCCTGTGTTTGCGCTT 60.227 52.632 9.73 0.00 0.00 4.68
251 252 2.412937 GTTGCCTGTGTTTGCGCT 59.587 55.556 9.73 0.00 0.00 5.92
252 253 2.658268 GGTTGCCTGTGTTTGCGC 60.658 61.111 0.00 0.00 0.00 6.09
253 254 0.459237 TTTGGTTGCCTGTGTTTGCG 60.459 50.000 0.00 0.00 0.00 4.85
254 255 1.006086 GTTTGGTTGCCTGTGTTTGC 58.994 50.000 0.00 0.00 0.00 3.68
255 256 2.376808 TGTTTGGTTGCCTGTGTTTG 57.623 45.000 0.00 0.00 0.00 2.93
256 257 3.625649 ATTGTTTGGTTGCCTGTGTTT 57.374 38.095 0.00 0.00 0.00 2.83
257 258 3.625649 AATTGTTTGGTTGCCTGTGTT 57.374 38.095 0.00 0.00 0.00 3.32
258 259 3.269178 CAAATTGTTTGGTTGCCTGTGT 58.731 40.909 0.00 0.00 37.01 3.72
259 260 2.031930 GCAAATTGTTTGGTTGCCTGTG 59.968 45.455 4.77 0.00 41.41 3.66
260 261 2.287769 GCAAATTGTTTGGTTGCCTGT 58.712 42.857 4.77 0.00 41.41 4.00
261 262 2.286872 TGCAAATTGTTTGGTTGCCTG 58.713 42.857 5.26 0.00 45.60 4.85
262 263 2.563702 CTGCAAATTGTTTGGTTGCCT 58.436 42.857 5.26 0.00 45.60 4.75
263 264 1.002576 GCTGCAAATTGTTTGGTTGCC 60.003 47.619 5.26 0.00 45.60 4.52
264 265 1.002576 GGCTGCAAATTGTTTGGTTGC 60.003 47.619 0.50 0.76 46.21 4.17
265 266 2.286872 TGGCTGCAAATTGTTTGGTTG 58.713 42.857 0.50 0.00 40.94 3.77
266 267 2.706339 TGGCTGCAAATTGTTTGGTT 57.294 40.000 0.50 0.00 40.94 3.67
267 268 2.369532 AGATGGCTGCAAATTGTTTGGT 59.630 40.909 0.50 0.00 40.94 3.67
268 269 2.739913 CAGATGGCTGCAAATTGTTTGG 59.260 45.455 0.50 0.00 40.94 3.28
269 270 3.655486 TCAGATGGCTGCAAATTGTTTG 58.345 40.909 0.50 0.00 42.01 2.93
270 271 3.863400 GCTCAGATGGCTGCAAATTGTTT 60.863 43.478 0.50 0.00 42.01 2.83
271 272 2.353406 GCTCAGATGGCTGCAAATTGTT 60.353 45.455 0.50 0.00 42.01 2.83
272 273 1.203994 GCTCAGATGGCTGCAAATTGT 59.796 47.619 0.50 0.00 42.01 2.71
273 274 1.470979 GGCTCAGATGGCTGCAAATTG 60.471 52.381 0.50 0.00 42.01 2.32
274 275 0.822164 GGCTCAGATGGCTGCAAATT 59.178 50.000 0.50 0.00 42.01 1.82
275 276 0.033405 AGGCTCAGATGGCTGCAAAT 60.033 50.000 0.50 0.00 42.01 2.32
276 277 0.251474 AAGGCTCAGATGGCTGCAAA 60.251 50.000 0.50 0.00 42.20 3.68
277 278 0.963856 CAAGGCTCAGATGGCTGCAA 60.964 55.000 0.50 0.00 42.20 4.08
278 279 1.378119 CAAGGCTCAGATGGCTGCA 60.378 57.895 0.50 0.00 42.20 4.41
279 280 0.465824 ATCAAGGCTCAGATGGCTGC 60.466 55.000 2.04 0.00 42.20 5.25
280 281 1.309950 CATCAAGGCTCAGATGGCTG 58.690 55.000 17.50 0.00 42.20 4.85
281 282 0.465824 GCATCAAGGCTCAGATGGCT 60.466 55.000 23.20 0.00 45.04 4.75
282 283 0.750546 TGCATCAAGGCTCAGATGGC 60.751 55.000 23.20 17.61 41.43 4.40
283 284 1.758936 TTGCATCAAGGCTCAGATGG 58.241 50.000 23.20 11.09 41.43 3.51
284 285 2.543861 GCATTGCATCAAGGCTCAGATG 60.544 50.000 19.77 19.77 45.78 2.90
285 286 1.681793 GCATTGCATCAAGGCTCAGAT 59.318 47.619 3.15 0.00 45.78 2.90
286 287 1.100510 GCATTGCATCAAGGCTCAGA 58.899 50.000 3.15 0.00 45.78 3.27
287 288 3.642901 GCATTGCATCAAGGCTCAG 57.357 52.632 3.15 0.00 45.78 3.35
292 293 0.248012 TTGCCTGCATTGCATCAAGG 59.752 50.000 12.53 10.86 38.13 3.61
293 294 1.355971 GTTGCCTGCATTGCATCAAG 58.644 50.000 20.01 7.45 38.13 3.02
294 295 0.037139 GGTTGCCTGCATTGCATCAA 60.037 50.000 12.53 15.50 38.13 2.57
295 296 1.186267 TGGTTGCCTGCATTGCATCA 61.186 50.000 12.53 10.40 38.13 3.07
296 297 0.037139 TTGGTTGCCTGCATTGCATC 60.037 50.000 12.53 7.85 38.13 3.91
297 298 0.616371 ATTGGTTGCCTGCATTGCAT 59.384 45.000 12.53 0.00 38.13 3.96
298 299 0.037139 GATTGGTTGCCTGCATTGCA 60.037 50.000 11.50 11.50 36.84 4.08
299 300 0.037139 TGATTGGTTGCCTGCATTGC 60.037 50.000 0.46 0.46 0.00 3.56
300 301 2.070783 GTTGATTGGTTGCCTGCATTG 58.929 47.619 0.00 0.00 0.00 2.82
301 302 1.693062 TGTTGATTGGTTGCCTGCATT 59.307 42.857 0.00 0.00 0.00 3.56
302 303 1.340088 TGTTGATTGGTTGCCTGCAT 58.660 45.000 0.00 0.00 0.00 3.96
303 304 1.001068 CATGTTGATTGGTTGCCTGCA 59.999 47.619 0.00 0.00 0.00 4.41
304 305 1.717194 CATGTTGATTGGTTGCCTGC 58.283 50.000 0.00 0.00 0.00 4.85
305 306 1.001068 TGCATGTTGATTGGTTGCCTG 59.999 47.619 0.00 0.00 32.39 4.85
306 307 1.274167 CTGCATGTTGATTGGTTGCCT 59.726 47.619 0.00 0.00 32.39 4.75
307 308 1.273048 TCTGCATGTTGATTGGTTGCC 59.727 47.619 0.00 0.00 32.39 4.52
308 309 2.728690 TCTGCATGTTGATTGGTTGC 57.271 45.000 0.00 0.00 0.00 4.17
730 731 2.367486 GGTCTACCGACTGCTAACTCT 58.633 52.381 0.00 0.00 40.10 3.24
756 757 3.767711 TGTCAGTGAGAGAGTGGTATGT 58.232 45.455 0.00 0.00 0.00 2.29
936 937 4.394712 GACCACCCGGCAGTGAGG 62.395 72.222 11.95 1.62 40.34 3.86
985 986 0.320421 AACATTAGTCGTGTGCCGCT 60.320 50.000 0.00 0.00 36.19 5.52
1062 1069 4.767255 CCAGCCGAGGAGGTGTGC 62.767 72.222 0.00 0.00 43.70 4.57
1511 1521 1.302993 TAGGCCAAAACCCTCGTGC 60.303 57.895 5.01 0.00 33.88 5.34
1586 1600 3.582208 CCTCAAATCCCCAAATCCACAAA 59.418 43.478 0.00 0.00 0.00 2.83
1587 1601 3.172339 CCTCAAATCCCCAAATCCACAA 58.828 45.455 0.00 0.00 0.00 3.33
1588 1602 2.818921 CCTCAAATCCCCAAATCCACA 58.181 47.619 0.00 0.00 0.00 4.17
1589 1603 1.482182 GCCTCAAATCCCCAAATCCAC 59.518 52.381 0.00 0.00 0.00 4.02
1590 1604 1.864669 GCCTCAAATCCCCAAATCCA 58.135 50.000 0.00 0.00 0.00 3.41
1591 1605 0.746659 CGCCTCAAATCCCCAAATCC 59.253 55.000 0.00 0.00 0.00 3.01
1592 1606 1.134946 CACGCCTCAAATCCCCAAATC 59.865 52.381 0.00 0.00 0.00 2.17
1648 1664 0.533951 CGCGAACCCTACTACCCTTT 59.466 55.000 0.00 0.00 0.00 3.11
1700 1716 5.245977 AGAAAACCCCAATTCTACCACAATG 59.754 40.000 0.00 0.00 34.24 2.82
1791 1807 5.967088 TCTAATCTCTAAAGGCACACAGAC 58.033 41.667 0.00 0.00 0.00 3.51
1810 1826 6.601332 AGGAACACCAGACATTTCTTTCTAA 58.399 36.000 0.00 0.00 0.00 2.10
1863 1879 7.362662 CAAACAACATATACAAGCACAGACTT 58.637 34.615 0.00 0.00 0.00 3.01
2176 2192 6.574350 ACGAATTTAAGAGACACCTATCAGG 58.426 40.000 0.00 0.00 42.49 3.86
2177 2193 9.751542 ATAACGAATTTAAGAGACACCTATCAG 57.248 33.333 0.00 0.00 0.00 2.90
2178 2194 9.529325 CATAACGAATTTAAGAGACACCTATCA 57.471 33.333 0.00 0.00 0.00 2.15
2179 2195 8.488764 GCATAACGAATTTAAGAGACACCTATC 58.511 37.037 0.00 0.00 0.00 2.08
2180 2196 7.985184 TGCATAACGAATTTAAGAGACACCTAT 59.015 33.333 0.00 0.00 0.00 2.57
2181 2197 7.324935 TGCATAACGAATTTAAGAGACACCTA 58.675 34.615 0.00 0.00 0.00 3.08
2182 2198 6.170506 TGCATAACGAATTTAAGAGACACCT 58.829 36.000 0.00 0.00 0.00 4.00
2183 2199 6.417191 TGCATAACGAATTTAAGAGACACC 57.583 37.500 0.00 0.00 0.00 4.16
2227 2246 2.633967 TCGGAACACCTACCAGCTTTAA 59.366 45.455 0.00 0.00 0.00 1.52
2387 2408 2.302157 GGTACTCGAATATCCCAAGGGG 59.698 54.545 5.08 0.00 46.11 4.79
2612 2633 7.695055 TCCAACCTCCTTGAAATAATCTTACA 58.305 34.615 0.00 0.00 30.42 2.41
2818 2839 6.701145 ACTAAGAAATGTCGAGCAGATCTA 57.299 37.500 0.00 0.00 0.00 1.98
2874 2895 1.937223 CCGTGACACACAAACAGCTAA 59.063 47.619 6.37 0.00 33.40 3.09
2887 2908 7.876068 ACAACTATTTAATTTCTCTCCGTGACA 59.124 33.333 0.00 0.00 0.00 3.58
3066 3214 2.448926 TGTGGACTGACAACCGTATG 57.551 50.000 0.00 0.00 0.00 2.39
3122 3270 0.551396 GAGGGTTAGTGGAATGGGGG 59.449 60.000 0.00 0.00 0.00 5.40
3123 3271 1.596496 AGAGGGTTAGTGGAATGGGG 58.404 55.000 0.00 0.00 0.00 4.96
3124 3272 3.118000 GGTTAGAGGGTTAGTGGAATGGG 60.118 52.174 0.00 0.00 0.00 4.00
3125 3273 3.118000 GGGTTAGAGGGTTAGTGGAATGG 60.118 52.174 0.00 0.00 0.00 3.16
3126 3274 3.780850 AGGGTTAGAGGGTTAGTGGAATG 59.219 47.826 0.00 0.00 0.00 2.67
3127 3275 4.090027 AGGGTTAGAGGGTTAGTGGAAT 57.910 45.455 0.00 0.00 0.00 3.01
3128 3276 3.572661 AGGGTTAGAGGGTTAGTGGAA 57.427 47.619 0.00 0.00 0.00 3.53
3129 3277 3.599698 ACTAGGGTTAGAGGGTTAGTGGA 59.400 47.826 0.00 0.00 0.00 4.02
3130 3278 3.991683 ACTAGGGTTAGAGGGTTAGTGG 58.008 50.000 0.00 0.00 0.00 4.00
3131 3279 7.486407 TTAAACTAGGGTTAGAGGGTTAGTG 57.514 40.000 0.00 0.00 34.90 2.74
3132 3280 8.510358 TTTTAAACTAGGGTTAGAGGGTTAGT 57.490 34.615 0.00 0.00 34.90 2.24
3487 3880 1.071987 TGAGGAGCACAACAGCAGG 59.928 57.895 0.00 0.00 36.85 4.85
3523 3916 1.075226 AGCAGAAGAGGGGCGGATA 60.075 57.895 0.00 0.00 0.00 2.59
3657 4097 0.842635 ATCCCATGGCCAGAGTCTTC 59.157 55.000 13.05 0.00 0.00 2.87
3672 4112 5.246307 GGGCTGTGTCAACTATAATATCCC 58.754 45.833 0.00 0.00 0.00 3.85
3687 4127 1.352622 TGAAGAACCTGGGGCTGTGT 61.353 55.000 0.00 0.00 0.00 3.72
3765 4205 2.546789 CCAATAAGTAATTCCGGACGGC 59.453 50.000 1.83 0.00 34.68 5.68
3824 4264 5.957842 ACTTGTCGCAGAAATGGATAAAA 57.042 34.783 0.00 0.00 39.69 1.52
3831 4271 5.898159 CGAAATTACTTGTCGCAGAAATG 57.102 39.130 0.00 0.00 39.69 2.32
3858 4298 9.359195 AGGAATTCTCTCTAGTATATACTCCCT 57.641 37.037 18.68 8.07 37.73 4.20
3859 4299 9.984590 AAGGAATTCTCTCTAGTATATACTCCC 57.015 37.037 18.68 6.28 37.73 4.30
3867 4307 8.379331 GGCCAAATAAGGAATTCTCTCTAGTAT 58.621 37.037 5.23 0.00 0.00 2.12
3868 4308 7.202102 GGGCCAAATAAGGAATTCTCTCTAGTA 60.202 40.741 4.39 0.00 0.00 1.82
3869 4309 6.409810 GGGCCAAATAAGGAATTCTCTCTAGT 60.410 42.308 4.39 0.00 0.00 2.57
3870 4310 6.000840 GGGCCAAATAAGGAATTCTCTCTAG 58.999 44.000 4.39 0.00 0.00 2.43
4016 4456 2.399396 AATGGACTTTTCACGTTGCG 57.601 45.000 0.00 0.00 0.00 4.85
4243 5971 8.807118 ACAACTATTCTTCTCTTCTCACATGTA 58.193 33.333 0.00 0.00 0.00 2.29
4246 5974 7.038729 TCCACAACTATTCTTCTCTTCTCACAT 60.039 37.037 0.00 0.00 0.00 3.21
4585 8173 3.146066 ACAGAAAAATCTAGTTGCGGCA 58.854 40.909 0.00 0.00 0.00 5.69
4825 8419 4.364415 ACAGCTTGCAAAAACGTCTTAA 57.636 36.364 0.00 0.00 0.00 1.85
4845 8439 8.669394 AATATAAGACGTTTTTGCAAGCTAAC 57.331 30.769 0.00 5.28 0.00 2.34
4847 8441 9.929722 CATAATATAAGACGTTTTTGCAAGCTA 57.070 29.630 0.00 0.00 0.00 3.32
4852 8446 7.466185 CGTCCCATAATATAAGACGTTTTTGCA 60.466 37.037 13.04 0.00 43.89 4.08
4895 8568 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4896 8569 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4897 8570 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4898 8571 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4915 8588 9.413734 CCCATATTGGAATCTCTAAAAAGACTT 57.586 33.333 0.00 0.00 40.96 3.01
4916 8589 7.503902 GCCCATATTGGAATCTCTAAAAAGACT 59.496 37.037 0.00 0.00 40.96 3.24
4917 8590 7.503902 AGCCCATATTGGAATCTCTAAAAAGAC 59.496 37.037 0.00 0.00 40.96 3.01
4918 8591 7.586349 AGCCCATATTGGAATCTCTAAAAAGA 58.414 34.615 0.00 0.00 40.96 2.52
4919 8592 7.830099 AGCCCATATTGGAATCTCTAAAAAG 57.170 36.000 0.00 0.00 40.96 2.27
4920 8593 8.278639 TGTAGCCCATATTGGAATCTCTAAAAA 58.721 33.333 0.00 0.00 40.96 1.94
4921 8594 7.811282 TGTAGCCCATATTGGAATCTCTAAAA 58.189 34.615 0.00 0.00 40.96 1.52
4922 8595 7.387265 TGTAGCCCATATTGGAATCTCTAAA 57.613 36.000 0.00 0.00 40.96 1.85
4923 8596 7.574021 ATGTAGCCCATATTGGAATCTCTAA 57.426 36.000 0.00 0.00 40.96 2.10
4924 8597 7.901322 AGTATGTAGCCCATATTGGAATCTCTA 59.099 37.037 0.00 0.00 40.96 2.43
4925 8598 6.732862 AGTATGTAGCCCATATTGGAATCTCT 59.267 38.462 0.00 0.00 40.96 3.10
4926 8599 6.820656 CAGTATGTAGCCCATATTGGAATCTC 59.179 42.308 0.00 0.00 40.96 2.75
4927 8600 6.501805 TCAGTATGTAGCCCATATTGGAATCT 59.498 38.462 13.23 0.00 41.60 2.40
4928 8601 6.711277 TCAGTATGTAGCCCATATTGGAATC 58.289 40.000 13.23 0.00 41.60 2.52
4929 8602 6.702449 TCAGTATGTAGCCCATATTGGAAT 57.298 37.500 13.23 0.00 41.60 3.01
4930 8603 6.044287 ACATCAGTATGTAGCCCATATTGGAA 59.956 38.462 13.23 0.98 44.66 3.53
4931 8604 5.547666 ACATCAGTATGTAGCCCATATTGGA 59.452 40.000 13.23 5.99 44.66 3.53
4932 8605 5.809001 ACATCAGTATGTAGCCCATATTGG 58.191 41.667 13.23 0.00 44.66 3.16
4960 8633 8.189460 GGTGAATCTACACTCTAAAATACGTCT 58.811 37.037 0.00 0.00 40.22 4.18
4961 8634 7.434602 GGGTGAATCTACACTCTAAAATACGTC 59.565 40.741 0.00 0.00 38.14 4.34
4962 8635 7.093640 TGGGTGAATCTACACTCTAAAATACGT 60.094 37.037 0.00 0.00 41.33 3.57
4963 8636 7.262772 TGGGTGAATCTACACTCTAAAATACG 58.737 38.462 0.00 0.00 41.33 3.06
4964 8637 9.614792 AATGGGTGAATCTACACTCTAAAATAC 57.385 33.333 0.00 0.00 41.33 1.89
4966 8639 9.533831 AAAATGGGTGAATCTACACTCTAAAAT 57.466 29.630 0.00 0.00 41.33 1.82
4967 8640 8.792633 CAAAATGGGTGAATCTACACTCTAAAA 58.207 33.333 0.00 0.00 41.33 1.52
4968 8641 7.094377 GCAAAATGGGTGAATCTACACTCTAAA 60.094 37.037 0.00 0.00 41.33 1.85
4969 8642 6.374333 GCAAAATGGGTGAATCTACACTCTAA 59.626 38.462 0.00 0.00 41.33 2.10
4970 8643 5.880332 GCAAAATGGGTGAATCTACACTCTA 59.120 40.000 0.00 0.00 41.33 2.43
4971 8644 4.702131 GCAAAATGGGTGAATCTACACTCT 59.298 41.667 0.00 0.00 41.33 3.24
4972 8645 4.702131 AGCAAAATGGGTGAATCTACACTC 59.298 41.667 0.00 0.00 41.16 3.51
4973 8646 4.666512 AGCAAAATGGGTGAATCTACACT 58.333 39.130 0.00 0.00 40.22 3.55
4974 8647 4.702131 AGAGCAAAATGGGTGAATCTACAC 59.298 41.667 0.00 0.00 39.70 2.90
4975 8648 4.701651 CAGAGCAAAATGGGTGAATCTACA 59.298 41.667 0.00 0.00 0.00 2.74
4976 8649 4.702131 ACAGAGCAAAATGGGTGAATCTAC 59.298 41.667 0.00 0.00 0.00 2.59
4977 8650 4.922206 ACAGAGCAAAATGGGTGAATCTA 58.078 39.130 0.00 0.00 0.00 1.98
4978 8651 3.771216 ACAGAGCAAAATGGGTGAATCT 58.229 40.909 0.00 0.00 0.00 2.40
4979 8652 5.126061 ACATACAGAGCAAAATGGGTGAATC 59.874 40.000 0.00 0.00 0.00 2.52
4980 8653 5.018809 ACATACAGAGCAAAATGGGTGAAT 58.981 37.500 0.00 0.00 0.00 2.57
4981 8654 4.406456 ACATACAGAGCAAAATGGGTGAA 58.594 39.130 0.00 0.00 0.00 3.18
4982 8655 4.032960 ACATACAGAGCAAAATGGGTGA 57.967 40.909 0.00 0.00 0.00 4.02
4983 8656 4.943705 ACTACATACAGAGCAAAATGGGTG 59.056 41.667 0.00 0.00 0.00 4.61
4984 8657 5.179452 ACTACATACAGAGCAAAATGGGT 57.821 39.130 0.00 0.00 0.00 4.51
4985 8658 4.576463 GGACTACATACAGAGCAAAATGGG 59.424 45.833 0.00 0.00 0.00 4.00
4986 8659 5.185454 TGGACTACATACAGAGCAAAATGG 58.815 41.667 0.00 0.00 0.00 3.16
4987 8660 6.932356 ATGGACTACATACAGAGCAAAATG 57.068 37.500 0.00 0.00 38.26 2.32
4988 8661 9.060347 CAATATGGACTACATACAGAGCAAAAT 57.940 33.333 0.00 0.00 44.41 1.82
4989 8662 7.498900 CCAATATGGACTACATACAGAGCAAAA 59.501 37.037 0.00 0.00 44.41 2.44
4990 8663 6.992123 CCAATATGGACTACATACAGAGCAAA 59.008 38.462 0.00 0.00 44.41 3.68
4991 8664 6.326323 TCCAATATGGACTACATACAGAGCAA 59.674 38.462 0.00 0.00 42.67 3.91
4992 8665 5.838521 TCCAATATGGACTACATACAGAGCA 59.161 40.000 0.00 0.00 42.67 4.26
4993 8666 6.346477 TCCAATATGGACTACATACAGAGC 57.654 41.667 0.00 0.00 42.67 4.09
5023 8696 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
5024 8697 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
5025 8698 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5026 8699 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5027 8700 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5028 8701 6.661304 TCCCTCCGTTCCTAAATATAAGTC 57.339 41.667 0.00 0.00 0.00 3.01
5029 8702 5.011840 GCTCCCTCCGTTCCTAAATATAAGT 59.988 44.000 0.00 0.00 0.00 2.24
5030 8703 5.011738 TGCTCCCTCCGTTCCTAAATATAAG 59.988 44.000 0.00 0.00 0.00 1.73
5031 8704 4.903049 TGCTCCCTCCGTTCCTAAATATAA 59.097 41.667 0.00 0.00 0.00 0.98
5032 8705 4.485875 TGCTCCCTCCGTTCCTAAATATA 58.514 43.478 0.00 0.00 0.00 0.86
5033 8706 3.314693 TGCTCCCTCCGTTCCTAAATAT 58.685 45.455 0.00 0.00 0.00 1.28
5034 8707 2.754465 TGCTCCCTCCGTTCCTAAATA 58.246 47.619 0.00 0.00 0.00 1.40
5035 8708 1.580059 TGCTCCCTCCGTTCCTAAAT 58.420 50.000 0.00 0.00 0.00 1.40
5036 8709 1.209504 CATGCTCCCTCCGTTCCTAAA 59.790 52.381 0.00 0.00 0.00 1.85
5037 8710 0.830648 CATGCTCCCTCCGTTCCTAA 59.169 55.000 0.00 0.00 0.00 2.69
5038 8711 0.325296 ACATGCTCCCTCCGTTCCTA 60.325 55.000 0.00 0.00 0.00 2.94
5039 8712 0.325296 TACATGCTCCCTCCGTTCCT 60.325 55.000 0.00 0.00 0.00 3.36
5040 8713 0.759346 ATACATGCTCCCTCCGTTCC 59.241 55.000 0.00 0.00 0.00 3.62
5041 8714 2.622064 AATACATGCTCCCTCCGTTC 57.378 50.000 0.00 0.00 0.00 3.95
5042 8715 3.039011 ACTAATACATGCTCCCTCCGTT 58.961 45.455 0.00 0.00 0.00 4.44
5043 8716 2.679082 ACTAATACATGCTCCCTCCGT 58.321 47.619 0.00 0.00 0.00 4.69
5044 8717 3.367498 GCTACTAATACATGCTCCCTCCG 60.367 52.174 0.00 0.00 0.00 4.63
5045 8718 3.835395 AGCTACTAATACATGCTCCCTCC 59.165 47.826 0.00 0.00 0.00 4.30
5046 8719 4.322349 CCAGCTACTAATACATGCTCCCTC 60.322 50.000 0.00 0.00 0.00 4.30
5047 8720 3.580458 CCAGCTACTAATACATGCTCCCT 59.420 47.826 0.00 0.00 0.00 4.20
5048 8721 3.307059 CCCAGCTACTAATACATGCTCCC 60.307 52.174 0.00 0.00 0.00 4.30
5049 8722 3.325135 ACCCAGCTACTAATACATGCTCC 59.675 47.826 0.00 0.00 0.00 4.70
5050 8723 4.310769 CACCCAGCTACTAATACATGCTC 58.689 47.826 0.00 0.00 0.00 4.26
5051 8724 3.495100 GCACCCAGCTACTAATACATGCT 60.495 47.826 0.00 0.00 41.15 3.79
5052 8725 2.808543 GCACCCAGCTACTAATACATGC 59.191 50.000 0.00 0.00 41.15 4.06
5072 8745 2.076863 CTGTAGCACCCAACTTACAGC 58.923 52.381 0.00 0.00 0.00 4.40
5083 8756 1.475280 TCGACATGGTACTGTAGCACC 59.525 52.381 20.63 12.23 39.21 5.01
5132 8942 4.532126 AGGTTGACACTCATAGACCAATCA 59.468 41.667 0.00 0.00 29.41 2.57
5235 9045 0.541998 TTCACCGAGGAGCCTTGAGA 60.542 55.000 5.30 0.78 0.00 3.27
5364 9174 0.804989 GCTGCCAGCATTAGACGTTT 59.195 50.000 12.82 0.00 41.89 3.60
5367 9177 1.083806 TTCGCTGCCAGCATTAGACG 61.084 55.000 18.21 0.00 42.58 4.18
5442 9255 9.026074 ACACAAAACTTTTCCACAATAAATACG 57.974 29.630 0.00 0.00 0.00 3.06
5718 9549 2.114616 ACACCAGGAGGCAGATCTAAG 58.885 52.381 0.00 0.00 39.06 2.18
5781 9612 1.899142 GACTTAAAATTGCCAGGGCCA 59.101 47.619 6.18 0.00 41.09 5.36
5862 9693 5.354767 TGATGATCAGAGAAATCCTCAACG 58.645 41.667 0.09 0.00 44.40 4.10
6160 10001 6.371809 TTCGAAGCAAAACTGAGTAATGTT 57.628 33.333 0.00 0.00 0.00 2.71
6223 10070 2.095161 ACGGTAGAGCTTTCTTCGACAG 60.095 50.000 0.00 0.00 0.00 3.51
6323 11595 1.193323 CCAGGAGAGTCAGCAGTGAT 58.807 55.000 0.00 0.00 34.36 3.06
6365 11637 9.012448 CATGTAAATAGTACAACAATGCACATG 57.988 33.333 0.00 0.00 34.40 3.21
6570 11842 6.160664 ACATACGAAGTTACCAAAATGTCG 57.839 37.500 0.00 0.00 37.78 4.35
6726 12024 1.202879 TCACAACCATGACCTTCCCAC 60.203 52.381 0.00 0.00 0.00 4.61
7134 12613 0.692756 TGTGAGACCACCCAAGGACA 60.693 55.000 0.00 0.00 42.53 4.02
7135 12614 0.472471 TTGTGAGACCACCCAAGGAC 59.528 55.000 0.00 0.00 42.53 3.85
7136 12615 1.217916 TTTGTGAGACCACCCAAGGA 58.782 50.000 0.00 0.00 42.53 3.36
7311 12791 2.097036 CATCACTGCCATGTCACCAAT 58.903 47.619 0.00 0.00 0.00 3.16
7466 12946 2.154854 TTCAACTCTGAACTCTGGCG 57.845 50.000 0.00 0.00 36.62 5.69
7550 13032 4.597004 AGAGTAATCCCGTGTCACTCTAA 58.403 43.478 0.65 0.00 43.09 2.10
7552 13034 3.088789 AGAGTAATCCCGTGTCACTCT 57.911 47.619 0.65 0.00 40.79 3.24
7926 13518 7.333423 GTGTGTGAGATATGTAACCTAAAAGCA 59.667 37.037 0.00 0.00 0.00 3.91
7943 13535 6.713762 AATTTGATTTTCTGGTGTGTGAGA 57.286 33.333 0.00 0.00 0.00 3.27
8520 14334 5.003804 CAGTTAGCATCTAAAACCACCACT 58.996 41.667 0.00 0.00 0.00 4.00
8581 14427 8.306761 AGCAAACGATATTCCAAATCTCTTTTT 58.693 29.630 0.00 0.00 0.00 1.94
8582 14428 7.830739 AGCAAACGATATTCCAAATCTCTTTT 58.169 30.769 0.00 0.00 0.00 2.27
8583 14429 7.396540 AGCAAACGATATTCCAAATCTCTTT 57.603 32.000 0.00 0.00 0.00 2.52
8584 14430 7.396540 AAGCAAACGATATTCCAAATCTCTT 57.603 32.000 0.00 0.00 0.00 2.85
8585 14431 8.562892 CATAAGCAAACGATATTCCAAATCTCT 58.437 33.333 0.00 0.00 0.00 3.10
8586 14432 8.559536 TCATAAGCAAACGATATTCCAAATCTC 58.440 33.333 0.00 0.00 0.00 2.75
8587 14433 8.450578 TCATAAGCAAACGATATTCCAAATCT 57.549 30.769 0.00 0.00 0.00 2.40
8588 14434 8.345565 ACTCATAAGCAAACGATATTCCAAATC 58.654 33.333 0.00 0.00 0.00 2.17
8589 14435 8.225603 ACTCATAAGCAAACGATATTCCAAAT 57.774 30.769 0.00 0.00 0.00 2.32
8619 14465 3.418047 ACAAGTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 32.32 4.30
8620 14466 4.069304 TGACAAGTATTTTTGGACGGAGG 58.931 43.478 0.00 0.00 32.32 4.30
8622 14468 5.309638 TGATGACAAGTATTTTTGGACGGA 58.690 37.500 0.00 0.00 32.32 4.69
8623 14469 5.621197 TGATGACAAGTATTTTTGGACGG 57.379 39.130 0.00 0.00 32.32 4.79
8624 14470 7.922505 TTTTGATGACAAGTATTTTTGGACG 57.077 32.000 0.00 0.00 37.32 4.79
8626 14472 8.646004 TCCATTTTGATGACAAGTATTTTTGGA 58.354 29.630 0.00 0.00 37.32 3.53
8627 14473 8.830201 TCCATTTTGATGACAAGTATTTTTGG 57.170 30.769 0.00 0.00 37.32 3.28
8635 14481 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
8691 14537 9.093458 GTCATCAAAATGGATAAAAGGGGATAT 57.907 33.333 0.00 0.00 33.42 1.63
8692 14538 8.064389 TGTCATCAAAATGGATAAAAGGGGATA 58.936 33.333 0.00 0.00 33.42 2.59
8693 14539 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
8694 14540 6.259893 TGTCATCAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
8695 14541 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
8696 14542 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
8703 14549 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
8704 14550 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
8705 14551 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
8706 14552 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
8707 14553 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
8708 14554 6.203145 TCGTCCGAAAATACTTGTCATCAAAA 59.797 34.615 0.00 0.00 32.87 2.44
8709 14555 5.697178 TCGTCCGAAAATACTTGTCATCAAA 59.303 36.000 0.00 0.00 32.87 2.69
8710 14556 5.231702 TCGTCCGAAAATACTTGTCATCAA 58.768 37.500 0.00 0.00 0.00 2.57
8711 14557 4.811908 TCGTCCGAAAATACTTGTCATCA 58.188 39.130 0.00 0.00 0.00 3.07
8712 14558 5.220416 CCTTCGTCCGAAAATACTTGTCATC 60.220 44.000 3.52 0.00 33.34 2.92
8713 14559 4.630069 CCTTCGTCCGAAAATACTTGTCAT 59.370 41.667 3.52 0.00 33.34 3.06
8714 14560 3.991773 CCTTCGTCCGAAAATACTTGTCA 59.008 43.478 3.52 0.00 33.34 3.58
8715 14561 3.370061 CCCTTCGTCCGAAAATACTTGTC 59.630 47.826 3.52 0.00 33.34 3.18
8716 14562 3.007182 TCCCTTCGTCCGAAAATACTTGT 59.993 43.478 3.52 0.00 33.34 3.16
8717 14563 3.592059 TCCCTTCGTCCGAAAATACTTG 58.408 45.455 3.52 0.00 33.34 3.16
8718 14564 3.260128 ACTCCCTTCGTCCGAAAATACTT 59.740 43.478 3.52 0.00 33.34 2.24
8719 14565 2.830321 ACTCCCTTCGTCCGAAAATACT 59.170 45.455 3.52 0.00 33.34 2.12
8720 14566 3.242549 ACTCCCTTCGTCCGAAAATAC 57.757 47.619 3.52 0.00 33.34 1.89
8721 14567 4.019174 AGTACTCCCTTCGTCCGAAAATA 58.981 43.478 3.52 0.00 33.34 1.40
8722 14568 2.830321 AGTACTCCCTTCGTCCGAAAAT 59.170 45.455 3.52 0.00 33.34 1.82
8723 14569 2.242043 AGTACTCCCTTCGTCCGAAAA 58.758 47.619 3.52 0.00 33.34 2.29
8724 14570 1.915141 AGTACTCCCTTCGTCCGAAA 58.085 50.000 3.52 0.00 33.34 3.46
8725 14571 2.026822 ACTAGTACTCCCTTCGTCCGAA 60.027 50.000 0.00 1.81 0.00 4.30
8726 14572 1.556911 ACTAGTACTCCCTTCGTCCGA 59.443 52.381 0.00 0.00 0.00 4.55
8727 14573 2.035530 ACTAGTACTCCCTTCGTCCG 57.964 55.000 0.00 0.00 0.00 4.79
8728 14574 3.625313 GTGTACTAGTACTCCCTTCGTCC 59.375 52.174 28.56 3.63 37.00 4.79
8729 14575 3.308323 CGTGTACTAGTACTCCCTTCGTC 59.692 52.174 28.56 4.10 37.00 4.20
8730 14576 3.055819 TCGTGTACTAGTACTCCCTTCGT 60.056 47.826 28.56 0.00 37.00 3.85
8731 14577 3.525537 TCGTGTACTAGTACTCCCTTCG 58.474 50.000 28.56 21.42 37.00 3.79
8732 14578 3.876320 CCTCGTGTACTAGTACTCCCTTC 59.124 52.174 28.56 13.58 37.00 3.46
8733 14579 3.883669 CCTCGTGTACTAGTACTCCCTT 58.116 50.000 28.56 0.00 37.00 3.95
8734 14580 2.421248 GCCTCGTGTACTAGTACTCCCT 60.421 54.545 28.56 0.00 37.00 4.20
8735 14581 1.946081 GCCTCGTGTACTAGTACTCCC 59.054 57.143 28.56 17.29 37.00 4.30
8736 14582 2.916640 AGCCTCGTGTACTAGTACTCC 58.083 52.381 28.56 19.34 37.00 3.85
8737 14583 4.437239 TGTAGCCTCGTGTACTAGTACTC 58.563 47.826 28.56 24.34 37.00 2.59
8738 14584 4.478206 TGTAGCCTCGTGTACTAGTACT 57.522 45.455 28.56 12.82 37.00 2.73
8739 14585 4.574013 ACATGTAGCCTCGTGTACTAGTAC 59.426 45.833 23.58 23.58 36.04 2.73
8740 14586 4.573607 CACATGTAGCCTCGTGTACTAGTA 59.426 45.833 0.00 0.00 36.04 1.82
8741 14587 3.377485 CACATGTAGCCTCGTGTACTAGT 59.623 47.826 0.00 0.00 36.04 2.57
8742 14588 3.792459 GCACATGTAGCCTCGTGTACTAG 60.792 52.174 0.00 0.00 36.04 2.57
8743 14589 2.098607 GCACATGTAGCCTCGTGTACTA 59.901 50.000 0.00 0.00 36.04 1.82
8749 14595 2.979814 TAATGCACATGTAGCCTCGT 57.020 45.000 14.85 3.82 0.00 4.18
8750 14596 3.133691 ACATAATGCACATGTAGCCTCG 58.866 45.455 12.83 0.00 34.88 4.63
8877 14723 4.588899 TGCCAACTGCTATTGACTAACAT 58.411 39.130 2.48 0.00 42.00 2.71
8900 14746 2.162681 AGCACTAATCAACTTGCCACC 58.837 47.619 0.00 0.00 35.47 4.61
9012 14890 9.521841 TGATCCTACGAGTAGAGATTAATCATT 57.478 33.333 17.56 7.47 35.21 2.57
9013 14891 9.693739 ATGATCCTACGAGTAGAGATTAATCAT 57.306 33.333 17.56 8.14 35.21 2.45
9017 14895 8.919777 TCAATGATCCTACGAGTAGAGATTAA 57.080 34.615 11.52 6.31 35.21 1.40
9018 14896 7.119992 GCTCAATGATCCTACGAGTAGAGATTA 59.880 40.741 11.52 9.29 35.21 1.75
9027 14905 3.126831 GGTTGCTCAATGATCCTACGAG 58.873 50.000 0.00 0.00 0.00 4.18
9030 14908 3.179443 TCGGTTGCTCAATGATCCTAC 57.821 47.619 0.00 0.00 0.00 3.18
9035 14913 4.269183 TGGTTTATCGGTTGCTCAATGAT 58.731 39.130 0.00 5.89 0.00 2.45
9039 14917 6.576662 TTAATTGGTTTATCGGTTGCTCAA 57.423 33.333 0.00 0.00 0.00 3.02
9044 14922 8.620416 TCAGATGATTAATTGGTTTATCGGTTG 58.380 33.333 0.00 0.00 0.00 3.77
9046 14924 8.924511 ATCAGATGATTAATTGGTTTATCGGT 57.075 30.769 0.00 0.00 0.00 4.69
9106 14984 8.269317 ACAATTAATTGGTTTATCGGGAGTAGA 58.731 33.333 27.43 0.00 41.96 2.59
9147 15025 8.409358 AAGATTAATAGGCTAATCGGCAAATT 57.591 30.769 0.00 0.00 41.33 1.82
9148 15026 7.885399 AGAAGATTAATAGGCTAATCGGCAAAT 59.115 33.333 0.00 0.00 41.33 2.32
9171 15056 3.010138 ACCCAGTTGGCTAGCAAATAGAA 59.990 43.478 18.24 0.00 37.83 2.10
9176 15061 2.307392 TCATACCCAGTTGGCTAGCAAA 59.693 45.455 18.24 9.18 37.83 3.68
9178 15063 1.486310 CTCATACCCAGTTGGCTAGCA 59.514 52.381 18.24 0.00 37.83 3.49
9189 15074 9.555727 GTTAAATTAGTCATTAGCTCATACCCA 57.444 33.333 0.00 0.00 0.00 4.51
9221 15106 8.697507 AGGAGATTAATAGGTTAATTGGCAAG 57.302 34.615 5.96 0.00 39.88 4.01
9232 15117 6.462628 GGACAGCGTTTAGGAGATTAATAGGT 60.463 42.308 0.00 0.00 0.00 3.08
9243 15128 0.320073 CGGTTGGACAGCGTTTAGGA 60.320 55.000 0.00 0.00 41.69 2.94
9261 15147 9.265901 AGGAAATCATTAACTGATGACTAATCG 57.734 33.333 2.45 0.00 44.03 3.34
9271 15157 8.634335 TCATTGTTGAGGAAATCATTAACTGA 57.366 30.769 4.72 0.00 37.89 3.41
9326 15213 9.569122 AAAAAGGACAAGTAATAGCTTGAACTA 57.431 29.630 12.05 0.00 46.34 2.24



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.