AutoCloner

Multiple sequence alignment - TraesCS1D01G125200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G125200	chr1D	100.000	8627	0	0	731	9357	132861994	132853368	0.000000e+00	15932.0
1	TraesCS1D01G125200	chr1D	100.000	329	0	0	1	329	132862724	132862396	8.030000e-170	608.0
2	TraesCS1D01G125200	chr1D	90.783	217	9	4	4246	4451	854373	854589	7.160000e-71	279.0
3	TraesCS1D01G125200	chr1D	83.660	153	18	3	5021	5169	162062516	162062367	4.560000e-28	137.0
4	TraesCS1D01G125200	chr1D	90.722	97	6	2	4796	4889	245893794	245893698	9.860000e-25	126.0
5	TraesCS1D01G125200	chr1A	95.980	2537	77	7	5055	7572	166318839	166321369	0.000000e+00	4096.0
6	TraesCS1D01G125200	chr1A	94.014	2389	81	25	732	3108	166315453	166317791	0.000000e+00	3563.0
7	TraesCS1D01G125200	chr1A	96.147	1064	29	6	7512	8573	166321369	166322422	0.000000e+00	1727.0
8	TraesCS1D01G125200	chr1A	88.547	585	26	11	4248	4814	281365750	281365189	0.000000e+00	671.0
9	TraesCS1D01G125200	chr1A	89.196	398	18	12	3189	3575	166318085	166318468	3.060000e-129	473.0
10	TraesCS1D01G125200	chr1A	84.665	463	46	16	8738	9189	166322434	166322882	1.120000e-118	438.0
11	TraesCS1D01G125200	chr1A	87.748	302	20	2	3499	3783	166318423	166318724	4.190000e-88	337.0
12	TraesCS1D01G125200	chr1A	93.013	229	15	1	3873	4100	281366488	281366260	5.420000e-87	333.0
13	TraesCS1D01G125200	chr1A	81.048	248	36	7	9114	9356	166322737	166322978	4.460000e-43	187.0
14	TraesCS1D01G125200	chr1A	87.692	130	12	2	5044	5169	222350469	222350598	2.110000e-31	148.0
15	TraesCS1D01G125200	chr1A	96.875	32	1	0	8588	8619	166322410	166322441	5.000000e-03	54.7
16	TraesCS1D01G125200	chr1B	96.189	2309	42	9	6281	8573	204407422	204405144	0.000000e+00	3735.0
17	TraesCS1D01G125200	chr1B	96.910	1327	37	1	4965	6287	204410156	204408830	0.000000e+00	2220.0
18	TraesCS1D01G125200	chr1B	95.206	1335	44	6	732	2062	204413501	204412183	0.000000e+00	2093.0
19	TraesCS1D01G125200	chr1B	95.218	941	19	10	2107	3047	204412190	204411276	0.000000e+00	1465.0
20	TraesCS1D01G125200	chr1B	95.929	737	18	4	3148	3873	204411098	204410363	0.000000e+00	1184.0
21	TraesCS1D01G125200	chr1B	94.400	500	21	4	4308	4800	535527125	535527624	0.000000e+00	761.0
22	TraesCS1D01G125200	chr1B	95.937	443	18	0	3872	4314	535526565	535527007	0.000000e+00	719.0
23	TraesCS1D01G125200	chr1B	89.362	329	26	8	1	329	622357966	622358285	1.130000e-108	405.0
24	TraesCS1D01G125200	chr1B	92.527	281	12	6	8738	9014	204405132	204404857	2.450000e-105	394.0
25	TraesCS1D01G125200	chr1B	88.146	329	30	8	1	329	622312326	622312645	5.300000e-102	383.0
26	TraesCS1D01G125200	chr1B	96.000	225	9	0	4877	5101	204410381	204410157	5.340000e-97	366.0
27	TraesCS1D01G125200	chr1B	87.952	249	24	4	9114	9357	204404793	204404546	1.190000e-73	289.0
28	TraesCS1D01G125200	chr1B	88.636	220	21	4	2580	2795	147110023	147109804	2.000000e-66	265.0
29	TraesCS1D01G125200	chr1B	90.991	111	4	2	4136	4245	38887012	38886907	2.720000e-30	145.0
30	TraesCS1D01G125200	chr1B	87.302	126	6	3	3754	3869	332136281	332136156	1.640000e-27	135.0
31	TraesCS1D01G125200	chr1B	88.288	111	13	0	5057	5167	656376181	656376071	5.890000e-27	134.0
32	TraesCS1D01G125200	chr1B	94.253	87	3	2	3785	3869	48266394	48266480	2.120000e-26	132.0
33	TraesCS1D01G125200	chr1B	91.489	94	8	0	9020	9113	204404821	204404728	7.630000e-26	130.0
34	TraesCS1D01G125200	chr1B	94.444	54	3	0	3045	3098	204411151	204411098	6.020000e-12	84.2
35	TraesCS1D01G125200	chr1B	100.000	29	0	0	8591	8619	204405153	204405125	5.000000e-03	54.7
36	TraesCS1D01G125200	chr2A	95.634	939	29	2	3873	4800	103136384	103137321	0.000000e+00	1496.0
37	TraesCS1D01G125200	chr2A	95.556	135	5	1	8616	8750	638330265	638330132	2.050000e-51	215.0
38	TraesCS1D01G125200	chr2A	91.150	113	10	0	5057	5169	270466947	270467059	4.520000e-33	154.0
39	TraesCS1D01G125200	chr2A	92.553	94	6	1	3331	3423	451810574	451810667	5.890000e-27	134.0
40	TraesCS1D01G125200	chr2A	88.542	96	11	0	3665	3760	451811076	451811171	5.940000e-22	117.0
41	TraesCS1D01G125200	chr2A	77.914	163	15	10	3493	3636	451810911	451811071	2.170000e-11	82.4
42	TraesCS1D01G125200	chr5B	83.944	1364	160	39	5735	7071	448299019	448297688	0.000000e+00	1251.0
43	TraesCS1D01G125200	chr5B	80.776	1212	163	33	5369	6567	448284923	448283769	0.000000e+00	883.0
44	TraesCS1D01G125200	chr5B	80.946	761	81	29	7769	8497	448279630	448278902	2.300000e-150	544.0
45	TraesCS1D01G125200	chr5B	84.114	598	53	25	7985	8568	448297681	448297112	2.970000e-149	540.0
46	TraesCS1D01G125200	chr5B	94.118	136	7	1	8615	8750	421613261	421613395	1.230000e-48	206.0
47	TraesCS1D01G125200	chr5B	90.217	92	9	0	8758	8849	448278787	448278696	4.590000e-23	121.0
48	TraesCS1D01G125200	chr5D	82.844	1329	174	29	5749	7064	375413655	375412368	0.000000e+00	1142.0
49	TraesCS1D01G125200	chr5D	83.725	1106	120	33	5464	6535	375450050	375448971	0.000000e+00	990.0
50	TraesCS1D01G125200	chr5D	83.562	584	60	23	7985	8560	375440738	375440183	1.800000e-141	514.0
51	TraesCS1D01G125200	chr5D	83.303	557	79	12	6526	7071	375441298	375440745	1.400000e-137	501.0
52	TraesCS1D01G125200	chr5D	91.743	327	26	1	3	329	168636947	168636622	3.980000e-123	453.0
53	TraesCS1D01G125200	chr5D	85.039	381	53	3	7769	8149	375411765	375411389	1.470000e-102	385.0
54	TraesCS1D01G125200	chr5D	84.153	183	13	9	8323	8496	375411242	375411067	7.520000e-36	163.0
55	TraesCS1D01G125200	chr5D	91.509	106	9	0	8232	8337	375411363	375411258	7.570000e-31	147.0
56	TraesCS1D01G125200	chr5D	92.632	95	5	1	4806	4898	197147099	197147193	1.640000e-27	135.0
57	TraesCS1D01G125200	chr5D	94.118	85	3	1	4806	4888	188826535	188826619	2.740000e-25	128.0
58	TraesCS1D01G125200	chr5D	86.667	90	12	0	9016	9105	267081718	267081807	5.980000e-17	100.0
59	TraesCS1D01G125200	chr5D	90.000	70	6	1	8753	8821	375410954	375410885	1.290000e-13	89.8
60	TraesCS1D01G125200	chr7D	95.200	625	18	2	4186	4799	364551014	364550391	0.000000e+00	977.0
61	TraesCS1D01G125200	chr7D	93.846	325	19	1	1	324	618329783	618329459	1.090000e-133	488.0
62	TraesCS1D01G125200	chr7D	93.009	329	13	2	3872	4199	364551949	364551630	1.100000e-128	472.0
63	TraesCS1D01G125200	chr7D	91.212	330	27	2	1	329	91566196	91565868	1.850000e-121	448.0
64	TraesCS1D01G125200	chr7D	93.258	89	5	1	3785	3872	628411014	628410926	7.630000e-26	130.0
65	TraesCS1D01G125200	chr7D	91.579	95	5	3	3785	3877	75937507	75937414	2.740000e-25	128.0
66	TraesCS1D01G125200	chr7B	94.709	567	18	5	3873	4427	162323591	162324157	0.000000e+00	870.0
67	TraesCS1D01G125200	chr7B	95.224	335	8	4	4445	4772	162330162	162330495	2.990000e-144	523.0
68	TraesCS1D01G125200	chr7B	92.179	179	11	2	4890	5065	464546937	464547115	5.610000e-62	250.0
69	TraesCS1D01G125200	chr7B	95.455	132	6	0	8616	8747	126893247	126893116	2.650000e-50	211.0
70	TraesCS1D01G125200	chr7B	89.381	113	12	0	5057	5169	199757873	199757985	9.790000e-30	143.0
71	TraesCS1D01G125200	chr3D	87.246	737	29	12	4118	4798	79599116	79599843	0.000000e+00	780.0
72	TraesCS1D01G125200	chr3D	91.489	329	28	0	1	329	348273044	348272716	3.980000e-123	453.0
73	TraesCS1D01G125200	chr3D	94.141	256	12	2	3872	4124	79598389	79598644	4.100000e-103	387.0
74	TraesCS1D01G125200	chr3D	96.250	160	6	0	4894	5053	187836469	187836310	7.210000e-66	263.0
75	TraesCS1D01G125200	chr3D	88.235	221	22	3	2580	2796	386221303	386221083	2.590000e-65	261.0
76	TraesCS1D01G125200	chr3D	78.638	426	64	20	6432	6845	135734332	135734742	3.350000e-64	257.0
77	TraesCS1D01G125200	chr3D	84.314	102	12	2	9016	9113	5509684	5509583	7.730000e-16	97.1
78	TraesCS1D01G125200	chr5A	81.170	940	132	23	6028	6965	476757660	476756764	0.000000e+00	713.0
79	TraesCS1D01G125200	chr5A	89.440	464	42	6	4342	4801	528833823	528834283	6.300000e-161	579.0
80	TraesCS1D01G125200	chr5A	92.952	227	16	0	3873	4099	528826535	528826761	1.950000e-86	331.0
81	TraesCS1D01G125200	chr5A	82.353	357	34	17	7981	8336	476755579	476755251	5.530000e-72	283.0
82	TraesCS1D01G125200	chr5A	95.266	169	8	0	4894	5062	320214405	320214237	1.550000e-67	268.0
83	TraesCS1D01G125200	chr5A	87.069	116	4	4	4242	4346	528827270	528827385	4.590000e-23	121.0
84	TraesCS1D01G125200	chr5A	95.385	65	3	0	4182	4246	528827183	528827247	4.620000e-18	104.0
85	TraesCS1D01G125200	chr5A	86.517	89	12	0	9017	9105	626266775	626266863	2.150000e-16	99.0
86	TraesCS1D01G125200	chr5A	84.536	97	15	0	9017	9113	204344881	204344977	7.730000e-16	97.1
87	TraesCS1D01G125200	chr5A	94.643	56	3	0	8323	8378	476755234	476755179	4.650000e-13	87.9
88	TraesCS1D01G125200	chr5A	82.178	101	16	2	3322	3420	575930000	575930100	1.670000e-12	86.1
89	TraesCS1D01G125200	chr5A	82.500	80	14	0	9221	9300	337314206	337314127	4.690000e-08	71.3
90	TraesCS1D01G125200	chr3A	87.141	661	43	7	4182	4801	597119342	597118683	0.000000e+00	712.0
91	TraesCS1D01G125200	chr3A	96.460	226	8	0	3874	4099	597119990	597119765	3.190000e-99	374.0
92	TraesCS1D01G125200	chr3A	78.873	426	63	21	6432	6845	151317015	151317425	7.210000e-66	263.0
93	TraesCS1D01G125200	chr3A	94.245	139	8	0	8608	8746	736073165	736073303	7.360000e-51	213.0
94	TraesCS1D01G125200	chr3A	94.505	91	2	2	4801	4889	507291578	507291489	4.560000e-28	137.0
95	TraesCS1D01G125200	chr3A	91.489	94	6	1	4806	4897	507291490	507291583	2.740000e-25	128.0
96	TraesCS1D01G125200	chr3A	84.314	102	12	3	9016	9113	519234741	519234640	7.730000e-16	97.1
97	TraesCS1D01G125200	chr3A	90.476	63	6	0	3685	3747	144157336	144157274	6.020000e-12	84.2
98	TraesCS1D01G125200	chr6A	88.660	582	36	11	4241	4803	381029798	381029228	0.000000e+00	682.0
99	TraesCS1D01G125200	chr6A	92.222	90	5	1	4801	4888	607845423	607845512	9.860000e-25	126.0
100	TraesCS1D01G125200	chr4B	90.204	490	31	8	4248	4720	88379899	88379410	2.870000e-174	623.0
101	TraesCS1D01G125200	chr4B	88.636	220	21	3	2580	2795	258762551	258762332	2.000000e-66	265.0
102	TraesCS1D01G125200	chr4B	77.696	408	68	17	6448	6845	17355905	17356299	2.630000e-55	228.0
103	TraesCS1D01G125200	chr4B	91.339	127	10	1	8616	8742	85730856	85730981	1.250000e-38	172.0
104	TraesCS1D01G125200	chr4B	93.478	92	4	2	3785	3874	27399452	27399543	1.640000e-27	135.0
105	TraesCS1D01G125200	chr4B	98.462	65	1	0	4182	4246	88380085	88380021	2.140000e-21	115.0
106	TraesCS1D01G125200	chr3B	92.073	328	26	0	1	328	710395343	710395016	6.620000e-126	462.0
107	TraesCS1D01G125200	chr3B	76.296	540	101	20	6432	6959	193960372	193960896	7.210000e-66	263.0
108	TraesCS1D01G125200	chr3B	94.326	141	8	0	8607	8747	506168313	506168453	5.690000e-52	217.0
109	TraesCS1D01G125200	chr3B	95.238	84	3	1	3785	3867	309414772	309414855	2.120000e-26	132.0
110	TraesCS1D01G125200	chr3B	92.391	92	5	1	4799	4888	486386621	486386712	7.630000e-26	130.0
111	TraesCS1D01G125200	chr2D	91.793	329	27	0	1	329	646431404	646431732	8.560000e-125	459.0
112	TraesCS1D01G125200	chr2D	86.651	427	14	8	4118	4509	306769723	306769305	5.190000e-117	433.0
113	TraesCS1D01G125200	chr2D	89.404	302	26	5	4505	4801	306767612	306767312	8.870000e-100	375.0
114	TraesCS1D01G125200	chr2D	93.617	235	13	1	3874	4108	306770480	306770248	5.380000e-92	350.0
115	TraesCS1D01G125200	chr2D	88.128	219	23	3	2580	2795	507196051	507196269	3.350000e-64	257.0
116	TraesCS1D01G125200	chr2D	93.642	173	8	3	4886	5058	296364043	296364212	1.210000e-63	255.0
117	TraesCS1D01G125200	chr2D	91.837	147	10	1	8601	8747	20689718	20689862	4.430000e-48	204.0
118	TraesCS1D01G125200	chr2D	90.598	117	10	1	5053	5169	238158289	238158404	4.520000e-33	154.0
119	TraesCS1D01G125200	chr2D	95.349	86	2	1	4806	4889	512165840	512165925	1.640000e-27	135.0
120	TraesCS1D01G125200	chr2D	88.660	97	11	0	3665	3761	342100337	342100433	1.650000e-22	119.0
121	TraesCS1D01G125200	chr6B	90.274	329	30	1	1	329	506550714	506551040	6.710000e-116	429.0
122	TraesCS1D01G125200	chr6B	95.455	132	6	0	8616	8747	207510901	207511032	2.650000e-50	211.0
123	TraesCS1D01G125200	chr6B	91.111	90	8	0	9016	9105	350014265	350014176	1.280000e-23	122.0
124	TraesCS1D01G125200	chr2B	92.105	228	18	0	3872	4099	253270047	253270274	1.170000e-83	322.0
125	TraesCS1D01G125200	chr2B	94.578	166	8	1	4893	5058	366017680	366017516	1.210000e-63	255.0
126	TraesCS1D01G125200	chr2B	91.216	148	12	1	8598	8744	549559405	549559552	5.730000e-47	200.0
127	TraesCS1D01G125200	chr2B	89.381	113	12	0	5057	5169	297436501	297436613	9.790000e-30	143.0
128	TraesCS1D01G125200	chr2B	87.629	97	12	0	3665	3761	407236910	407237006	7.680000e-21	113.0
129	TraesCS1D01G125200	chr2B	95.161	62	3	0	4118	4179	253270796	253270857	2.150000e-16	99.0
130	TraesCS1D01G125200	chr2B	92.754	69	4	1	3568	3636	407236838	407236905	2.150000e-16	99.0
131	TraesCS1D01G125200	chr7A	88.636	220	21	3	2580	2795	442273814	442273595	2.000000e-66	265.0
132	TraesCS1D01G125200	chr7A	95.679	162	7	0	4892	5053	494786827	494786988	2.590000e-65	261.0
133	TraesCS1D01G125200	chr7A	81.293	294	45	6	2512	2795	472930705	472930998	7.310000e-56	230.0
134	TraesCS1D01G125200	chr7A	91.667	84	7	0	3677	3760	365081191	365081274	5.940000e-22	117.0
135	TraesCS1D01G125200	chr7A	84.536	97	15	0	9017	9113	373864744	373864840	7.730000e-16	97.1
136	TraesCS1D01G125200	chr7A	86.076	79	11	0	6767	6845	364005718	364005796	1.670000e-12	86.1
137	TraesCS1D01G125200	chr7A	85.526	76	11	0	9114	9189	167815326	167815401	7.790000e-11	80.5
138	TraesCS1D01G125200	chr7A	89.130	46	5	0	9144	9189	576144430	576144475	3.650000e-04	58.4
139	TraesCS1D01G125200	chr4A	88.288	222	20	4	2580	2795	182894174	182894395	2.590000e-65	261.0
140	TraesCS1D01G125200	chr4A	93.407	91	3	3	3785	3872	38745277	38745367	2.120000e-26	132.0
141	TraesCS1D01G125200	chr4A	86.813	91	12	0	3665	3755	405572270	405572360	1.660000e-17	102.0
142	TraesCS1D01G125200	chr4D	95.000	160	8	0	4894	5053	334164552	334164393	1.560000e-62	252.0
143	TraesCS1D01G125200	chr4D	94.118	136	7	1	8612	8747	23352595	23352729	1.230000e-48	206.0
144	TraesCS1D01G125200	chr4D	84.800	125	14	4	3751	3870	461277439	461277563	4.590000e-23	121.0
145	TraesCS1D01G125200	chr4D	87.912	91	11	0	3665	3755	190479905	190479995	3.570000e-19	108.0
146	TraesCS1D01G125200	chr6D	94.186	86	3	1	4806	4889	142148799	142148714	7.630000e-26	130.0
147	TraesCS1D01G125200	chrUn	85.714	98	14	0	9016	9113	92737504	92737601	4.620000e-18	104.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G125200	chr1D	132853368	132862724	9356	True	8270.000000	15932	100.000000	1	9357	2	chr1D.!!$R3	9356
1	TraesCS1D01G125200	chr1A	166315453	166322978	7525	False	1359.462500	4096	90.709125	732	9356	8	chr1A.!!$F2	8624
2	TraesCS1D01G125200	chr1A	281365189	281366488	1299	True	502.000000	671	90.780000	3873	4814	2	chr1A.!!$R1	941
3	TraesCS1D01G125200	chr1B	204404546	204413501	8955	True	1092.263636	3735	94.714909	732	9357	11	chr1B.!!$R5	8625
4	TraesCS1D01G125200	chr1B	535526565	535527624	1059	False	740.000000	761	95.168500	3872	4800	2	chr1B.!!$F4	928
5	TraesCS1D01G125200	chr2A	103136384	103137321	937	False	1496.000000	1496	95.634000	3873	4800	1	chr2A.!!$F1	927
6	TraesCS1D01G125200	chr5B	448297112	448299019	1907	True	895.500000	1251	84.029000	5735	8568	2	chr5B.!!$R3	2833
7	TraesCS1D01G125200	chr5B	448283769	448284923	1154	True	883.000000	883	80.776000	5369	6567	1	chr5B.!!$R1	1198
8	TraesCS1D01G125200	chr5B	448278696	448279630	934	True	332.500000	544	85.581500	7769	8849	2	chr5B.!!$R2	1080
9	TraesCS1D01G125200	chr5D	375448971	375450050	1079	True	990.000000	990	83.725000	5464	6535	1	chr5D.!!$R2	1071
10	TraesCS1D01G125200	chr5D	375440183	375441298	1115	True	507.500000	514	83.432500	6526	8560	2	chr5D.!!$R4	2034
11	TraesCS1D01G125200	chr5D	375410885	375413655	2770	True	385.360000	1142	86.709000	5749	8821	5	chr5D.!!$R3	3072
12	TraesCS1D01G125200	chr7D	364550391	364551949	1558	True	724.500000	977	94.104500	3872	4799	2	chr7D.!!$R5	927
13	TraesCS1D01G125200	chr7B	162323591	162324157	566	False	870.000000	870	94.709000	3873	4427	1	chr7B.!!$F1	554
14	TraesCS1D01G125200	chr3D	79598389	79599843	1454	False	583.500000	780	90.693500	3872	4798	2	chr3D.!!$F2	926
15	TraesCS1D01G125200	chr5A	476755179	476757660	2481	True	361.300000	713	86.055333	6028	8378	3	chr5A.!!$R3	2350
16	TraesCS1D01G125200	chr3A	597118683	597119990	1307	True	543.000000	712	91.800500	3874	4801	2	chr3A.!!$R4	927
17	TraesCS1D01G125200	chr6A	381029228	381029798	570	True	682.000000	682	88.660000	4241	4803	1	chr6A.!!$R1	562
18	TraesCS1D01G125200	chr4B	88379410	88380085	675	True	369.000000	623	94.333000	4182	4720	2	chr4B.!!$R2	538
19	TraesCS1D01G125200	chr3B	193960372	193960896	524	False	263.000000	263	76.296000	6432	6959	1	chr3B.!!$F1	527
20	TraesCS1D01G125200	chr2D	306767312	306770480	3168	True	386.000000	433	89.890667	3874	4801	3	chr2D.!!$R1	927
21	TraesCS1D01G125200	chr2B	253270047	253270857	810	False	210.500000	322	93.633000	3872	4179	2	chr2B.!!$F3	307

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
294	295	0.033405	ATTTGCAGCCATCTGAGCCT	60.033	50.000	0.00	0.00	42.95	4.58	F
313	314	0.037139	TTGATGCAATGCAGGCAACC	60.037	50.000	18.29	13.61	45.60	3.77	F
318	319	0.037139	GCAATGCAGGCAACCAATCA	60.037	50.000	0.00	0.00	37.17	2.57	F
1543	1553	0.919710	GGCCTACCTGGGTCTTGATT	59.080	55.000	0.00	0.00	36.00	2.57	F
3118	3266	0.038159	CCGTGGAGACAAGACAGGAC	60.038	60.000	0.00	0.00	46.06	3.85	F
3119	3267	0.038159	CGTGGAGACAAGACAGGACC	60.038	60.000	0.00	0.00	46.06	4.46	F
3657	4097	0.250295	TCTTGGTTGGTGGAGAAGCG	60.250	55.000	0.00	0.00	0.00	4.68	F
3672	4112	0.392193	AAGCGAAGACTCTGGCCATG	60.392	55.000	5.51	4.91	0.00	3.66	F
5235	9045	1.068121	GCTGGGATTGGGCCTAGTAT	58.932	55.000	4.53	0.00	38.65	2.12	F
6160	10001	1.496857	TGATTTGACCCACCCACTTCA	59.503	47.619	0.00	0.00	0.00	3.02	F
6223	10070	3.389329	TCTTCTGAGGGCATATGTTCTCC	59.611	47.826	18.25	10.13	0.00	3.71	F
6570	11842	6.406692	TGCAAGTCCTCCAGTAAGTATATC	57.593	41.667	0.00	0.00	0.00	1.63	F
7296	12776	8.477419	TGGAAGAGAAAAATTGGTAGAAACAT	57.523	30.769	0.00	0.00	0.00	2.71	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1648	1664	0.533951	CGCGAACCCTACTACCCTTT	59.466	55.000	0.00	0.00	0.00	3.11	R
2227	2246	2.633967	TCGGAACACCTACCAGCTTTAA	59.366	45.455	0.00	0.00	0.00	1.52	R
2387	2408	2.302157	GGTACTCGAATATCCCAAGGGG	59.698	54.545	5.08	0.00	46.11	4.79	R
3122	3270	0.551396	GAGGGTTAGTGGAATGGGGG	59.449	60.000	0.00	0.00	0.00	5.40	R
5038	8711	0.325296	ACATGCTCCCTCCGTTCCTA	60.325	55.000	0.00	0.00	0.00	2.94	R
5040	8713	0.759346	ATACATGCTCCCTCCGTTCC	59.241	55.000	0.00	0.00	0.00	3.62	R
5235	9045	0.541998	TTCACCGAGGAGCCTTGAGA	60.542	55.000	5.30	0.78	0.00	3.27	R
5364	9174	0.804989	GCTGCCAGCATTAGACGTTT	59.195	50.000	12.82	0.00	41.89	3.60	R
7135	12614	0.472471	TTGTGAGACCACCCAAGGAC	59.528	55.000	0.00	0.00	42.53	3.85	R
7136	12615	1.217916	TTTGTGAGACCACCCAAGGA	58.782	50.000	0.00	0.00	42.53	3.36	R
7311	12791	2.097036	CATCACTGCCATGTCACCAAT	58.903	47.619	0.00	0.00	0.00	3.16	R
7466	12946	2.154854	TTCAACTCTGAACTCTGGCG	57.845	50.000	0.00	0.00	36.62	5.69	R
9243	15128	0.320073	CGGTTGGACAGCGTTTAGGA	60.320	55.000	0.00	0.00	41.69	2.94	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	0.954452	CCATATTTTGCCGAGGGAGC	59.046	55.000	0.00	0.00	0.00	4.70
20	21	1.679139	CATATTTTGCCGAGGGAGCA	58.321	50.000	0.00	0.00	38.81	4.26
21	22	1.605710	CATATTTTGCCGAGGGAGCAG	59.394	52.381	0.00	0.00	42.17	4.24
22	23	0.748005	TATTTTGCCGAGGGAGCAGC	60.748	55.000	0.00	0.00	42.17	5.25
23	24	2.769652	ATTTTGCCGAGGGAGCAGCA	62.770	55.000	0.00	0.00	42.17	4.41
24	25	4.704833	TTGCCGAGGGAGCAGCAC	62.705	66.667	0.00	0.00	42.17	4.40
42	43	3.099170	CCTGGGGTCCATCAGGGG	61.099	72.222	18.09	0.59	44.99	4.79
43	44	3.813724	CTGGGGTCCATCAGGGGC	61.814	72.222	4.12	0.00	42.12	5.80
44	45	4.692041	TGGGGTCCATCAGGGGCA	62.692	66.667	0.00	0.00	45.89	5.36
45	46	3.105928	GGGGTCCATCAGGGGCAT	61.106	66.667	0.00	0.00	45.89	4.40
46	47	2.196776	GGGTCCATCAGGGGCATG	59.803	66.667	0.00	0.00	45.89	4.06
47	48	2.196776	GGTCCATCAGGGGCATGG	59.803	66.667	0.00	0.00	45.89	3.66
48	49	2.196776	GTCCATCAGGGGCATGGG	59.803	66.667	0.00	0.00	42.53	4.00
49	50	2.044280	TCCATCAGGGGCATGGGA	59.956	61.111	0.00	0.00	41.25	4.37
50	51	1.387781	TCCATCAGGGGCATGGGAT	60.388	57.895	0.00	0.00	41.25	3.85
51	52	1.228769	CCATCAGGGGCATGGGATG	60.229	63.158	0.00	0.00	37.71	3.51
62	63	2.779271	TGGGATGCCCTGCCATTT	59.221	55.556	0.00	0.00	45.70	2.32
63	64	1.080722	TGGGATGCCCTGCCATTTT	59.919	52.632	0.00	0.00	45.70	1.82
64	65	0.337773	TGGGATGCCCTGCCATTTTA	59.662	50.000	0.00	0.00	45.70	1.52
65	66	1.273495	TGGGATGCCCTGCCATTTTAA	60.273	47.619	0.00	0.00	45.70	1.52
66	67	1.836802	GGGATGCCCTGCCATTTTAAA	59.163	47.619	0.00	0.00	41.34	1.52
67	68	2.419990	GGGATGCCCTGCCATTTTAAAC	60.420	50.000	0.00	0.00	41.34	2.01
68	69	2.501316	GGATGCCCTGCCATTTTAAACT	59.499	45.455	0.00	0.00	0.00	2.66
69	70	3.055167	GGATGCCCTGCCATTTTAAACTT	60.055	43.478	0.00	0.00	0.00	2.66
70	71	4.161377	GGATGCCCTGCCATTTTAAACTTA	59.839	41.667	0.00	0.00	0.00	2.24
71	72	5.163311	GGATGCCCTGCCATTTTAAACTTAT	60.163	40.000	0.00	0.00	0.00	1.73
72	73	5.083533	TGCCCTGCCATTTTAAACTTATG	57.916	39.130	0.00	0.00	0.00	1.90
73	74	3.871006	GCCCTGCCATTTTAAACTTATGC	59.129	43.478	0.00	0.00	0.00	3.14
74	75	4.441792	CCCTGCCATTTTAAACTTATGCC	58.558	43.478	0.00	0.00	0.00	4.40
75	76	4.162131	CCCTGCCATTTTAAACTTATGCCT	59.838	41.667	0.00	0.00	0.00	4.75
76	77	5.362430	CCCTGCCATTTTAAACTTATGCCTA	59.638	40.000	0.00	0.00	0.00	3.93
77	78	6.461509	CCCTGCCATTTTAAACTTATGCCTAG	60.462	42.308	0.00	0.00	0.00	3.02
78	79	6.096846	CCTGCCATTTTAAACTTATGCCTAGT	59.903	38.462	0.00	0.00	0.00	2.57
79	80	7.284489	CCTGCCATTTTAAACTTATGCCTAGTA	59.716	37.037	0.00	0.00	0.00	1.82
80	81	8.220755	TGCCATTTTAAACTTATGCCTAGTAG	57.779	34.615	0.00	0.00	0.00	2.57
81	82	8.050325	TGCCATTTTAAACTTATGCCTAGTAGA	58.950	33.333	0.00	0.00	0.00	2.59
82	83	9.067986	GCCATTTTAAACTTATGCCTAGTAGAT	57.932	33.333	0.00	0.00	0.00	1.98
92	93	8.474025	ACTTATGCCTAGTAGATTATGATCTGC	58.526	37.037	10.15	8.73	42.55	4.26
93	94	5.667539	TGCCTAGTAGATTATGATCTGCC	57.332	43.478	10.15	1.25	43.59	4.85
94	95	5.336945	TGCCTAGTAGATTATGATCTGCCT	58.663	41.667	10.15	8.14	43.59	4.75
95	96	5.186603	TGCCTAGTAGATTATGATCTGCCTG	59.813	44.000	10.15	4.76	43.59	4.85
96	97	5.186797	GCCTAGTAGATTATGATCTGCCTGT	59.813	44.000	10.15	0.00	43.59	4.00
97	98	6.295575	GCCTAGTAGATTATGATCTGCCTGTT	60.296	42.308	10.15	0.00	43.59	3.16
98	99	7.319646	CCTAGTAGATTATGATCTGCCTGTTC	58.680	42.308	10.15	0.00	43.59	3.18
99	100	6.992664	AGTAGATTATGATCTGCCTGTTCT	57.007	37.500	10.15	0.00	43.59	3.01
100	101	7.372260	AGTAGATTATGATCTGCCTGTTCTT	57.628	36.000	10.15	0.00	43.59	2.52
101	102	7.800092	AGTAGATTATGATCTGCCTGTTCTTT	58.200	34.615	10.15	0.00	43.59	2.52
102	103	6.939132	AGATTATGATCTGCCTGTTCTTTG	57.061	37.500	0.00	0.00	41.09	2.77
103	104	4.970662	TTATGATCTGCCTGTTCTTTGC	57.029	40.909	0.00	0.00	0.00	3.68
104	105	2.574006	TGATCTGCCTGTTCTTTGCT	57.426	45.000	0.00	0.00	0.00	3.91
105	106	2.867624	TGATCTGCCTGTTCTTTGCTT	58.132	42.857	0.00	0.00	0.00	3.91
106	107	2.555325	TGATCTGCCTGTTCTTTGCTTG	59.445	45.455	0.00	0.00	0.00	4.01
107	108	2.057137	TCTGCCTGTTCTTTGCTTGT	57.943	45.000	0.00	0.00	0.00	3.16
108	109	2.378038	TCTGCCTGTTCTTTGCTTGTT	58.622	42.857	0.00	0.00	0.00	2.83
109	110	2.358898	TCTGCCTGTTCTTTGCTTGTTC	59.641	45.455	0.00	0.00	0.00	3.18
110	111	2.360165	CTGCCTGTTCTTTGCTTGTTCT	59.640	45.455	0.00	0.00	0.00	3.01
111	112	2.760092	TGCCTGTTCTTTGCTTGTTCTT	59.240	40.909	0.00	0.00	0.00	2.52
112	113	3.118542	GCCTGTTCTTTGCTTGTTCTTG	58.881	45.455	0.00	0.00	0.00	3.02
113	114	3.118542	CCTGTTCTTTGCTTGTTCTTGC	58.881	45.455	0.00	0.00	0.00	4.01
114	115	3.181483	CCTGTTCTTTGCTTGTTCTTGCT	60.181	43.478	0.00	0.00	0.00	3.91
115	116	3.772932	TGTTCTTTGCTTGTTCTTGCTG	58.227	40.909	0.00	0.00	0.00	4.41
116	117	3.193267	TGTTCTTTGCTTGTTCTTGCTGT	59.807	39.130	0.00	0.00	0.00	4.40
117	118	4.176271	GTTCTTTGCTTGTTCTTGCTGTT	58.824	39.130	0.00	0.00	0.00	3.16
118	119	4.454728	TCTTTGCTTGTTCTTGCTGTTT	57.545	36.364	0.00	0.00	0.00	2.83
119	120	4.819769	TCTTTGCTTGTTCTTGCTGTTTT	58.180	34.783	0.00	0.00	0.00	2.43
120	121	5.237048	TCTTTGCTTGTTCTTGCTGTTTTT	58.763	33.333	0.00	0.00	0.00	1.94
121	122	4.925061	TTGCTTGTTCTTGCTGTTTTTG	57.075	36.364	0.00	0.00	0.00	2.44
122	123	3.924144	TGCTTGTTCTTGCTGTTTTTGT	58.076	36.364	0.00	0.00	0.00	2.83
123	124	3.679025	TGCTTGTTCTTGCTGTTTTTGTG	59.321	39.130	0.00	0.00	0.00	3.33
124	125	3.679502	GCTTGTTCTTGCTGTTTTTGTGT	59.320	39.130	0.00	0.00	0.00	3.72
125	126	4.152223	GCTTGTTCTTGCTGTTTTTGTGTT	59.848	37.500	0.00	0.00	0.00	3.32
126	127	5.588568	TTGTTCTTGCTGTTTTTGTGTTG	57.411	34.783	0.00	0.00	0.00	3.33
127	128	3.431572	TGTTCTTGCTGTTTTTGTGTTGC	59.568	39.130	0.00	0.00	0.00	4.17
128	129	3.591196	TCTTGCTGTTTTTGTGTTGCT	57.409	38.095	0.00	0.00	0.00	3.91
129	130	3.252400	TCTTGCTGTTTTTGTGTTGCTG	58.748	40.909	0.00	0.00	0.00	4.41
130	131	3.056962	TCTTGCTGTTTTTGTGTTGCTGA	60.057	39.130	0.00	0.00	0.00	4.26
131	132	3.523606	TGCTGTTTTTGTGTTGCTGAT	57.476	38.095	0.00	0.00	0.00	2.90
132	133	3.188492	TGCTGTTTTTGTGTTGCTGATG	58.812	40.909	0.00	0.00	0.00	3.07
133	134	3.119209	TGCTGTTTTTGTGTTGCTGATGA	60.119	39.130	0.00	0.00	0.00	2.92
134	135	4.053295	GCTGTTTTTGTGTTGCTGATGAT	58.947	39.130	0.00	0.00	0.00	2.45
135	136	4.149396	GCTGTTTTTGTGTTGCTGATGATC	59.851	41.667	0.00	0.00	0.00	2.92
136	137	5.259832	TGTTTTTGTGTTGCTGATGATCA	57.740	34.783	0.00	0.00	0.00	2.92
137	138	5.845103	TGTTTTTGTGTTGCTGATGATCAT	58.155	33.333	8.25	8.25	0.00	2.45
138	139	6.979465	TGTTTTTGTGTTGCTGATGATCATA	58.021	32.000	8.54	0.00	0.00	2.15
139	140	7.085746	TGTTTTTGTGTTGCTGATGATCATAG	58.914	34.615	8.54	7.84	0.00	2.23
140	141	6.822667	TTTTGTGTTGCTGATGATCATAGT	57.177	33.333	8.54	0.00	0.00	2.12
141	142	5.806366	TTGTGTTGCTGATGATCATAGTG	57.194	39.130	8.54	3.08	0.00	2.74
142	143	4.835678	TGTGTTGCTGATGATCATAGTGT	58.164	39.130	8.54	0.00	0.00	3.55
143	144	4.632688	TGTGTTGCTGATGATCATAGTGTG	59.367	41.667	8.54	0.00	0.00	3.82
144	145	4.633126	GTGTTGCTGATGATCATAGTGTGT	59.367	41.667	8.54	0.00	0.00	3.72
145	146	5.122869	GTGTTGCTGATGATCATAGTGTGTT	59.877	40.000	8.54	0.00	0.00	3.32
146	147	5.122711	TGTTGCTGATGATCATAGTGTGTTG	59.877	40.000	8.54	0.00	0.00	3.33
147	148	4.835678	TGCTGATGATCATAGTGTGTTGT	58.164	39.130	8.54	0.00	0.00	3.32
148	149	4.632688	TGCTGATGATCATAGTGTGTTGTG	59.367	41.667	8.54	0.00	0.00	3.33
149	150	4.633126	GCTGATGATCATAGTGTGTTGTGT	59.367	41.667	8.54	0.00	0.00	3.72
150	151	5.446875	GCTGATGATCATAGTGTGTTGTGTG	60.447	44.000	8.54	0.00	0.00	3.82
151	152	4.392754	TGATGATCATAGTGTGTTGTGTGC	59.607	41.667	8.54	0.00	0.00	4.57
152	153	4.006780	TGATCATAGTGTGTTGTGTGCT	57.993	40.909	0.00	0.00	0.00	4.40
153	154	3.747529	TGATCATAGTGTGTTGTGTGCTG	59.252	43.478	0.00	0.00	0.00	4.41
154	155	3.192541	TCATAGTGTGTTGTGTGCTGT	57.807	42.857	0.00	0.00	0.00	4.40
155	156	3.130633	TCATAGTGTGTTGTGTGCTGTC	58.869	45.455	0.00	0.00	0.00	3.51
156	157	2.682155	TAGTGTGTTGTGTGCTGTCA	57.318	45.000	0.00	0.00	0.00	3.58
157	158	1.819928	AGTGTGTTGTGTGCTGTCAA	58.180	45.000	0.00	0.00	0.00	3.18
158	159	2.158559	AGTGTGTTGTGTGCTGTCAAA	58.841	42.857	0.00	0.00	0.00	2.69
159	160	2.754552	AGTGTGTTGTGTGCTGTCAAAT	59.245	40.909	0.00	0.00	0.00	2.32
160	161	2.853594	GTGTGTTGTGTGCTGTCAAATG	59.146	45.455	0.00	0.00	0.00	2.32
161	162	2.159268	TGTGTTGTGTGCTGTCAAATGG	60.159	45.455	0.00	0.00	0.00	3.16
162	163	1.408340	TGTTGTGTGCTGTCAAATGGG	59.592	47.619	0.00	0.00	0.00	4.00
163	164	1.408702	GTTGTGTGCTGTCAAATGGGT	59.591	47.619	0.00	0.00	0.00	4.51
164	165	1.031235	TGTGTGCTGTCAAATGGGTG	58.969	50.000	0.00	0.00	0.00	4.61
165	166	0.314935	GTGTGCTGTCAAATGGGTGG	59.685	55.000	0.00	0.00	0.00	4.61
166	167	0.106268	TGTGCTGTCAAATGGGTGGT	60.106	50.000	0.00	0.00	0.00	4.16
167	168	1.143889	TGTGCTGTCAAATGGGTGGTA	59.856	47.619	0.00	0.00	0.00	3.25
168	169	2.235016	GTGCTGTCAAATGGGTGGTAA	58.765	47.619	0.00	0.00	0.00	2.85
169	170	2.030274	GTGCTGTCAAATGGGTGGTAAC	60.030	50.000	0.00	0.00	0.00	2.50
170	171	2.158534	TGCTGTCAAATGGGTGGTAACT	60.159	45.455	0.00	0.00	37.61	2.24
171	172	2.488153	GCTGTCAAATGGGTGGTAACTC	59.512	50.000	0.00	0.00	37.61	3.01
183	184	3.866703	TGGTAACTCCACCACATTTGA	57.133	42.857	0.00	0.00	43.76	2.69
184	185	4.171878	TGGTAACTCCACCACATTTGAA	57.828	40.909	0.00	0.00	43.76	2.69
185	186	4.537751	TGGTAACTCCACCACATTTGAAA	58.462	39.130	0.00	0.00	43.76	2.69
186	187	4.582656	TGGTAACTCCACCACATTTGAAAG	59.417	41.667	0.00	0.00	43.76	2.62
187	188	4.825085	GGTAACTCCACCACATTTGAAAGA	59.175	41.667	0.00	0.00	38.55	2.52
188	189	5.048713	GGTAACTCCACCACATTTGAAAGAG	60.049	44.000	0.00	0.00	38.55	2.85
189	190	4.437682	ACTCCACCACATTTGAAAGAGA	57.562	40.909	0.00	0.00	0.00	3.10
190	191	4.990526	ACTCCACCACATTTGAAAGAGAT	58.009	39.130	0.00	0.00	0.00	2.75
191	192	4.763793	ACTCCACCACATTTGAAAGAGATG	59.236	41.667	0.00	0.00	0.00	2.90
192	193	4.984295	TCCACCACATTTGAAAGAGATGA	58.016	39.130	0.00	0.00	0.00	2.92
193	194	5.005740	TCCACCACATTTGAAAGAGATGAG	58.994	41.667	0.00	0.00	0.00	2.90
194	195	4.380233	CCACCACATTTGAAAGAGATGAGC	60.380	45.833	0.00	0.00	0.00	4.26
195	196	4.216902	CACCACATTTGAAAGAGATGAGCA	59.783	41.667	0.00	0.00	0.00	4.26
196	197	4.458295	ACCACATTTGAAAGAGATGAGCAG	59.542	41.667	0.00	0.00	0.00	4.24
197	198	4.698780	CCACATTTGAAAGAGATGAGCAGA	59.301	41.667	0.00	0.00	0.00	4.26
198	199	5.357314	CCACATTTGAAAGAGATGAGCAGAT	59.643	40.000	0.00	0.00	0.00	2.90
199	200	6.127703	CCACATTTGAAAGAGATGAGCAGATT	60.128	38.462	0.00	0.00	0.00	2.40
200	201	7.066645	CCACATTTGAAAGAGATGAGCAGATTA	59.933	37.037	0.00	0.00	0.00	1.75
201	202	8.456471	CACATTTGAAAGAGATGAGCAGATTAA	58.544	33.333	0.00	0.00	0.00	1.40
202	203	8.675504	ACATTTGAAAGAGATGAGCAGATTAAG	58.324	33.333	0.00	0.00	0.00	1.85
203	204	8.675504	CATTTGAAAGAGATGAGCAGATTAAGT	58.324	33.333	0.00	0.00	0.00	2.24
204	205	9.896645	ATTTGAAAGAGATGAGCAGATTAAGTA	57.103	29.630	0.00	0.00	0.00	2.24
205	206	8.709386	TTGAAAGAGATGAGCAGATTAAGTAC	57.291	34.615	0.00	0.00	0.00	2.73
206	207	8.072321	TGAAAGAGATGAGCAGATTAAGTACT	57.928	34.615	0.00	0.00	0.00	2.73
207	208	8.535335	TGAAAGAGATGAGCAGATTAAGTACTT	58.465	33.333	13.68	13.68	0.00	2.24
208	209	8.715191	AAAGAGATGAGCAGATTAAGTACTTG	57.285	34.615	18.56	2.62	0.00	3.16
209	210	6.279882	AGAGATGAGCAGATTAAGTACTTGC	58.720	40.000	18.56	13.03	0.00	4.01
210	211	5.982356	AGATGAGCAGATTAAGTACTTGCA	58.018	37.500	18.56	5.11	0.00	4.08
211	212	5.814705	AGATGAGCAGATTAAGTACTTGCAC	59.185	40.000	18.56	11.97	0.00	4.57
212	213	4.893608	TGAGCAGATTAAGTACTTGCACA	58.106	39.130	18.56	14.34	0.00	4.57
213	214	4.690748	TGAGCAGATTAAGTACTTGCACAC	59.309	41.667	18.56	9.19	0.00	3.82
214	215	4.641396	AGCAGATTAAGTACTTGCACACA	58.359	39.130	18.56	0.00	0.00	3.72
215	216	5.063204	AGCAGATTAAGTACTTGCACACAA	58.937	37.500	18.56	3.56	0.00	3.33
216	217	5.049405	AGCAGATTAAGTACTTGCACACAAC	60.049	40.000	18.56	1.41	0.00	3.32
217	218	5.689819	CAGATTAAGTACTTGCACACAACC	58.310	41.667	18.56	0.00	0.00	3.77
218	219	5.238432	CAGATTAAGTACTTGCACACAACCA	59.762	40.000	18.56	0.00	0.00	3.67
219	220	5.825679	AGATTAAGTACTTGCACACAACCAA	59.174	36.000	18.56	0.59	0.00	3.67
220	221	5.899120	TTAAGTACTTGCACACAACCAAA	57.101	34.783	18.56	0.00	0.00	3.28
221	222	3.775661	AGTACTTGCACACAACCAAAC	57.224	42.857	0.00	0.00	0.00	2.93
222	223	3.085533	AGTACTTGCACACAACCAAACA	58.914	40.909	0.00	0.00	0.00	2.83
223	224	3.508012	AGTACTTGCACACAACCAAACAA	59.492	39.130	0.00	0.00	0.00	2.83
224	225	2.682836	ACTTGCACACAACCAAACAAC	58.317	42.857	0.00	0.00	0.00	3.32
225	226	2.298729	ACTTGCACACAACCAAACAACT	59.701	40.909	0.00	0.00	0.00	3.16
226	227	2.360553	TGCACACAACCAAACAACTG	57.639	45.000	0.00	0.00	0.00	3.16
227	228	1.615883	TGCACACAACCAAACAACTGT	59.384	42.857	0.00	0.00	0.00	3.55
228	229	1.991965	GCACACAACCAAACAACTGTG	59.008	47.619	0.00	0.00	43.81	3.66
229	230	1.991965	CACACAACCAAACAACTGTGC	59.008	47.619	1.14	0.00	42.33	4.57
230	231	1.892474	ACACAACCAAACAACTGTGCT	59.108	42.857	1.14	0.00	42.33	4.40
231	232	2.298729	ACACAACCAAACAACTGTGCTT	59.701	40.909	1.14	0.00	42.33	3.91
232	233	3.244044	ACACAACCAAACAACTGTGCTTT	60.244	39.130	1.14	0.00	42.33	3.51
233	234	3.123284	CACAACCAAACAACTGTGCTTTG	59.877	43.478	4.29	4.29	33.41	2.77
234	235	2.008752	ACCAAACAACTGTGCTTTGC	57.991	45.000	5.37	0.00	30.67	3.68
235	236	1.274728	ACCAAACAACTGTGCTTTGCA	59.725	42.857	5.37	0.00	35.60	4.08
236	237	2.093553	ACCAAACAACTGTGCTTTGCAT	60.094	40.909	0.00	0.00	41.91	3.96
237	238	2.540931	CCAAACAACTGTGCTTTGCATC	59.459	45.455	0.00	0.00	41.91	3.91
238	239	3.450578	CAAACAACTGTGCTTTGCATCT	58.549	40.909	0.00	0.00	41.91	2.90
239	240	2.787601	ACAACTGTGCTTTGCATCTG	57.212	45.000	0.00	0.00	41.91	2.90
240	241	1.269413	ACAACTGTGCTTTGCATCTGC	60.269	47.619	0.00	0.00	41.91	4.26
241	242	1.000607	CAACTGTGCTTTGCATCTGCT	60.001	47.619	3.53	0.00	41.91	4.24
242	243	0.879765	ACTGTGCTTTGCATCTGCTC	59.120	50.000	3.53	4.93	41.91	4.26
243	244	0.879090	CTGTGCTTTGCATCTGCTCA	59.121	50.000	3.53	8.48	41.91	4.26
244	245	0.594602	TGTGCTTTGCATCTGCTCAC	59.405	50.000	3.53	7.00	41.91	3.51
245	246	0.594602	GTGCTTTGCATCTGCTCACA	59.405	50.000	3.53	0.00	41.91	3.58
246	247	0.594602	TGCTTTGCATCTGCTCACAC	59.405	50.000	3.53	0.00	42.66	3.82
247	248	0.109412	GCTTTGCATCTGCTCACACC	60.109	55.000	3.53	0.00	42.66	4.16
248	249	1.531423	CTTTGCATCTGCTCACACCT	58.469	50.000	3.53	0.00	42.66	4.00
249	250	2.703416	CTTTGCATCTGCTCACACCTA	58.297	47.619	3.53	0.00	42.66	3.08
250	251	2.857186	TTGCATCTGCTCACACCTAA	57.143	45.000	3.53	0.00	42.66	2.69
251	252	2.857186	TGCATCTGCTCACACCTAAA	57.143	45.000	3.53	0.00	42.66	1.85
252	253	2.703416	TGCATCTGCTCACACCTAAAG	58.297	47.619	3.53	0.00	42.66	1.85
253	254	1.399791	GCATCTGCTCACACCTAAAGC	59.600	52.381	0.00	0.00	38.21	3.51
254	255	1.662629	CATCTGCTCACACCTAAAGCG	59.337	52.381	0.00	0.00	38.90	4.68
255	256	0.670546	TCTGCTCACACCTAAAGCGC	60.671	55.000	0.00	0.00	38.90	5.92
256	257	0.950555	CTGCTCACACCTAAAGCGCA	60.951	55.000	11.47	0.00	38.90	6.09
257	258	0.533978	TGCTCACACCTAAAGCGCAA	60.534	50.000	11.47	0.00	38.90	4.85
258	259	0.591170	GCTCACACCTAAAGCGCAAA	59.409	50.000	11.47	0.00	0.00	3.68
259	260	1.663161	GCTCACACCTAAAGCGCAAAC	60.663	52.381	11.47	0.00	0.00	2.93
260	261	1.601903	CTCACACCTAAAGCGCAAACA	59.398	47.619	11.47	0.00	0.00	2.83
261	262	1.332375	TCACACCTAAAGCGCAAACAC	59.668	47.619	11.47	0.00	0.00	3.32
262	263	1.064803	CACACCTAAAGCGCAAACACA	59.935	47.619	11.47	0.00	0.00	3.72
263	264	1.333619	ACACCTAAAGCGCAAACACAG	59.666	47.619	11.47	0.00	0.00	3.66
264	265	0.951558	ACCTAAAGCGCAAACACAGG	59.048	50.000	11.47	9.49	0.00	4.00
265	266	0.387239	CCTAAAGCGCAAACACAGGC	60.387	55.000	11.47	0.00	0.00	4.85
266	267	0.310543	CTAAAGCGCAAACACAGGCA	59.689	50.000	11.47	0.00	0.00	4.75
267	268	0.741326	TAAAGCGCAAACACAGGCAA	59.259	45.000	11.47	0.00	0.00	4.52
268	269	0.805711	AAAGCGCAAACACAGGCAAC	60.806	50.000	11.47	0.00	0.00	4.17
269	270	2.627510	AAGCGCAAACACAGGCAACC	62.628	55.000	11.47	0.00	37.17	3.77
270	271	2.804167	CGCAAACACAGGCAACCA	59.196	55.556	0.00	0.00	37.17	3.67
271	272	1.140589	CGCAAACACAGGCAACCAA	59.859	52.632	0.00	0.00	37.17	3.67
272	273	0.459237	CGCAAACACAGGCAACCAAA	60.459	50.000	0.00	0.00	37.17	3.28
273	274	1.006086	GCAAACACAGGCAACCAAAC	58.994	50.000	0.00	0.00	37.17	2.93
274	275	1.674221	GCAAACACAGGCAACCAAACA	60.674	47.619	0.00	0.00	37.17	2.83
275	276	2.693069	CAAACACAGGCAACCAAACAA	58.307	42.857	0.00	0.00	37.17	2.83
276	277	3.269178	CAAACACAGGCAACCAAACAAT	58.731	40.909	0.00	0.00	37.17	2.71
277	278	3.625649	AACACAGGCAACCAAACAATT	57.374	38.095	0.00	0.00	37.17	2.32
278	279	3.625649	ACACAGGCAACCAAACAATTT	57.374	38.095	0.00	0.00	37.17	1.82
279	280	3.269178	ACACAGGCAACCAAACAATTTG	58.731	40.909	0.00	0.00	40.32	2.32
280	281	2.031930	CACAGGCAACCAAACAATTTGC	59.968	45.455	0.00	0.00	44.05	3.68
281	282	2.286872	CAGGCAACCAAACAATTTGCA	58.713	42.857	7.74	0.00	46.12	4.08
282	283	2.288458	CAGGCAACCAAACAATTTGCAG	59.712	45.455	7.74	0.00	46.12	4.41
283	284	1.002576	GGCAACCAAACAATTTGCAGC	60.003	47.619	7.74	0.00	46.12	5.25
284	285	1.002576	GCAACCAAACAATTTGCAGCC	60.003	47.619	0.00	0.00	44.17	4.85
285	286	2.286872	CAACCAAACAATTTGCAGCCA	58.713	42.857	0.00	0.00	39.31	4.75
286	287	2.879646	CAACCAAACAATTTGCAGCCAT	59.120	40.909	0.00	0.00	39.31	4.40
287	288	2.769893	ACCAAACAATTTGCAGCCATC	58.230	42.857	0.00	0.00	39.31	3.51
288	289	2.369532	ACCAAACAATTTGCAGCCATCT	59.630	40.909	0.00	0.00	39.31	2.90
289	290	2.739913	CCAAACAATTTGCAGCCATCTG	59.260	45.455	0.00	0.00	43.16	2.90
290	291	3.555377	CCAAACAATTTGCAGCCATCTGA	60.555	43.478	0.00	0.00	42.01	3.27
291	292	3.587797	AACAATTTGCAGCCATCTGAG	57.412	42.857	0.00	0.00	42.95	3.35
292	293	1.203994	ACAATTTGCAGCCATCTGAGC	59.796	47.619	0.00	0.00	42.95	4.26
293	294	0.822164	AATTTGCAGCCATCTGAGCC	59.178	50.000	0.00	0.00	42.95	4.70
294	295	0.033405	ATTTGCAGCCATCTGAGCCT	60.033	50.000	0.00	0.00	42.95	4.58
295	296	0.251474	TTTGCAGCCATCTGAGCCTT	60.251	50.000	0.00	0.00	42.95	4.35
296	297	0.963856	TTGCAGCCATCTGAGCCTTG	60.964	55.000	0.00	0.00	42.95	3.61
297	298	1.077930	GCAGCCATCTGAGCCTTGA	60.078	57.895	0.00	0.00	42.95	3.02
298	299	0.465824	GCAGCCATCTGAGCCTTGAT	60.466	55.000	0.00	0.00	42.95	2.57
299	300	1.309950	CAGCCATCTGAGCCTTGATG	58.690	55.000	0.00	0.00	42.95	3.07
300	301	0.465824	AGCCATCTGAGCCTTGATGC	60.466	55.000	0.00	0.00	38.84	3.91
301	302	0.750546	GCCATCTGAGCCTTGATGCA	60.751	55.000	0.00	0.00	38.84	3.96
302	303	1.758936	CCATCTGAGCCTTGATGCAA	58.241	50.000	0.00	0.00	38.84	4.08
303	304	2.307768	CCATCTGAGCCTTGATGCAAT	58.692	47.619	0.00	0.00	38.84	3.56
304	305	2.034685	CCATCTGAGCCTTGATGCAATG	59.965	50.000	0.00	0.00	38.84	2.82
305	306	1.100510	TCTGAGCCTTGATGCAATGC	58.899	50.000	0.00	0.00	35.73	3.56
306	307	0.815095	CTGAGCCTTGATGCAATGCA	59.185	50.000	11.44	11.44	44.86	3.96
307	308	0.815095	TGAGCCTTGATGCAATGCAG	59.185	50.000	14.98	0.00	43.65	4.41
308	309	0.102481	GAGCCTTGATGCAATGCAGG	59.898	55.000	14.98	10.48	43.65	4.85
309	310	1.520787	GCCTTGATGCAATGCAGGC	60.521	57.895	18.20	18.20	43.65	4.85
310	311	1.894512	CCTTGATGCAATGCAGGCA	59.105	52.632	14.98	16.95	43.65	4.75
311	312	0.248012	CCTTGATGCAATGCAGGCAA	59.752	50.000	18.29	18.07	45.60	4.52
312	313	1.355971	CTTGATGCAATGCAGGCAAC	58.644	50.000	18.29	16.04	45.60	4.17
313	314	0.037139	TTGATGCAATGCAGGCAACC	60.037	50.000	18.29	13.61	45.60	3.77
314	315	1.186267	TGATGCAATGCAGGCAACCA	61.186	50.000	18.29	15.61	45.60	3.67
315	316	0.037139	GATGCAATGCAGGCAACCAA	60.037	50.000	18.29	0.00	45.60	3.67
316	317	0.616371	ATGCAATGCAGGCAACCAAT	59.384	45.000	18.29	0.69	45.60	3.16
317	318	0.037139	TGCAATGCAGGCAACCAATC	60.037	50.000	12.89	0.00	38.54	2.67
318	319	0.037139	GCAATGCAGGCAACCAATCA	60.037	50.000	0.00	0.00	37.17	2.57
319	320	1.608542	GCAATGCAGGCAACCAATCAA	60.609	47.619	0.00	0.00	37.17	2.57
320	321	2.070783	CAATGCAGGCAACCAATCAAC	58.929	47.619	0.00	0.00	37.17	3.18
321	322	1.340088	ATGCAGGCAACCAATCAACA	58.660	45.000	0.00	0.00	37.17	3.33
322	323	1.340088	TGCAGGCAACCAATCAACAT	58.660	45.000	0.00	0.00	37.17	2.71
323	324	1.001068	TGCAGGCAACCAATCAACATG	59.999	47.619	0.00	0.00	37.17	3.21
324	325	1.717194	CAGGCAACCAATCAACATGC	58.283	50.000	0.00	0.00	36.31	4.06
325	326	1.001068	CAGGCAACCAATCAACATGCA	59.999	47.619	0.00	0.00	38.73	3.96
326	327	1.274167	AGGCAACCAATCAACATGCAG	59.726	47.619	0.00	0.00	38.73	4.41
327	328	1.273048	GGCAACCAATCAACATGCAGA	59.727	47.619	0.00	0.00	38.73	4.26
328	329	2.093869	GGCAACCAATCAACATGCAGAT	60.094	45.455	0.00	0.00	38.73	2.90
843	844	1.069378	CGCTTTCTCGGTGGACGTAC	61.069	60.000	0.00	0.00	44.69	3.67
940	941	2.725641	CACCGTCGTGTGACCTCA	59.274	61.111	7.78	0.00	42.37	3.86
985	986	3.189921	CGTCATCCACGGTCGGTA	58.810	61.111	0.00	0.00	45.46	4.02
1176	1183	3.376935	CTTCGCCATGGACGCCTCT	62.377	63.158	18.40	0.00	0.00	3.69
1229	1236	3.239587	TCAGCCGTCGATTGTATTTCA	57.760	42.857	0.00	0.00	0.00	2.69
1441	1451	2.157738	CTCCCTTCTTCTGGTTTGCTG	58.842	52.381	0.00	0.00	0.00	4.41
1531	1541	0.958876	CACGAGGGTTTTGGCCTACC	60.959	60.000	3.32	9.06	0.00	3.18
1543	1553	0.919710	GGCCTACCTGGGTCTTGATT	59.080	55.000	0.00	0.00	36.00	2.57
1589	1603	4.388378	TTTTTCGTGGGGTTTAGGTTTG	57.612	40.909	0.00	0.00	0.00	2.93
1590	1604	2.732844	TTCGTGGGGTTTAGGTTTGT	57.267	45.000	0.00	0.00	0.00	2.83
1591	1605	1.970092	TCGTGGGGTTTAGGTTTGTG	58.030	50.000	0.00	0.00	0.00	3.33
1592	1606	0.955905	CGTGGGGTTTAGGTTTGTGG	59.044	55.000	0.00	0.00	0.00	4.17
1648	1664	7.124599	TCGAGGTGGAAAGTATCTTAATACCAA	59.875	37.037	0.00	0.00	38.88	3.67
1700	1716	7.745620	TTTGTCTTTAGGTTTCTGGAGATTC	57.254	36.000	0.00	0.00	0.00	2.52
1810	1826	4.623932	TTGTCTGTGTGCCTTTAGAGAT	57.376	40.909	0.00	0.00	0.00	2.75
1863	1879	7.079182	AGTTTCGTTGTGTTTGTAGAATTGA	57.921	32.000	0.00	0.00	0.00	2.57
2227	2246	4.497006	GCATGAATTTTGATGCTCTAGCGT	60.497	41.667	7.37	0.00	43.17	5.07
2612	2633	5.294060	GTGTTTGATTGTGCACAGGAAAAAT	59.706	36.000	20.59	9.50	32.62	1.82
2733	2754	4.033709	TCAAACAACCCATGGAGGAAAAA	58.966	39.130	15.22	0.00	41.22	1.94
2874	2895	2.691526	CTGGGCATTGCATGTATTCTGT	59.308	45.455	11.39	0.00	0.00	3.41
2887	2908	6.568462	GCATGTATTCTGTTAGCTGTTTGTGT	60.568	38.462	0.00	0.00	0.00	3.72
3111	3259	2.358737	GGGCACCGTGGAGACAAG	60.359	66.667	0.00	0.00	41.09	3.16
3112	3260	2.741092	GGCACCGTGGAGACAAGA	59.259	61.111	0.00	0.00	46.06	3.02
3113	3261	1.668151	GGCACCGTGGAGACAAGAC	60.668	63.158	0.00	0.00	46.06	3.01
3114	3262	1.069090	GCACCGTGGAGACAAGACA	59.931	57.895	0.00	0.00	46.06	3.41
3115	3263	0.946221	GCACCGTGGAGACAAGACAG	60.946	60.000	0.00	0.00	46.06	3.51
3116	3264	0.319900	CACCGTGGAGACAAGACAGG	60.320	60.000	0.00	0.00	46.06	4.00
3117	3265	0.469331	ACCGTGGAGACAAGACAGGA	60.469	55.000	0.00	0.00	46.06	3.86
3118	3266	0.038159	CCGTGGAGACAAGACAGGAC	60.038	60.000	0.00	0.00	46.06	3.85
3119	3267	0.038159	CGTGGAGACAAGACAGGACC	60.038	60.000	0.00	0.00	46.06	4.46
3120	3268	0.321996	GTGGAGACAAGACAGGACCC	59.678	60.000	0.00	0.00	46.06	4.46
3121	3269	0.836400	TGGAGACAAGACAGGACCCC	60.836	60.000	0.00	0.00	37.44	4.95
3122	3270	1.554583	GGAGACAAGACAGGACCCCC	61.555	65.000	0.00	0.00	0.00	5.40
3140	3288	2.723305	CCCCCATTCCACTAACCCT	58.277	57.895	0.00	0.00	0.00	4.34
3141	3289	0.551396	CCCCCATTCCACTAACCCTC	59.449	60.000	0.00	0.00	0.00	4.30
3142	3290	1.596496	CCCCATTCCACTAACCCTCT	58.404	55.000	0.00	0.00	0.00	3.69
3143	3291	2.631268	CCCCCATTCCACTAACCCTCTA	60.631	54.545	0.00	0.00	0.00	2.43
3144	3292	3.120108	CCCCATTCCACTAACCCTCTAA	58.880	50.000	0.00	0.00	0.00	2.10
3145	3293	3.118000	CCCCATTCCACTAACCCTCTAAC	60.118	52.174	0.00	0.00	0.00	2.34
3146	3294	3.118000	CCCATTCCACTAACCCTCTAACC	60.118	52.174	0.00	0.00	0.00	2.85
3217	3578	1.303155	GCCTGCTCTGCTCTGGTTT	60.303	57.895	0.00	0.00	0.00	3.27
3481	3874	2.040464	TGCTCCTCCCCTGGATCC	60.040	66.667	4.20	4.20	35.30	3.36
3523	3916	2.433446	CCTGCTGTGCTCCCTTGT	59.567	61.111	0.00	0.00	0.00	3.16
3657	4097	0.250295	TCTTGGTTGGTGGAGAAGCG	60.250	55.000	0.00	0.00	0.00	4.68
3672	4112	0.392193	AAGCGAAGACTCTGGCCATG	60.392	55.000	5.51	4.91	0.00	3.66
3687	4127	5.790096	TCTGGCCATGGGATATTATAGTTGA	59.210	40.000	15.13	0.00	0.00	3.18
3783	4223	1.682854	TCGCCGTCCGGAATTACTTAT	59.317	47.619	5.23	0.00	37.50	1.73
3859	4299	3.008456	CGACAAGTAATTTCGCACGAG	57.992	47.619	0.00	0.00	0.00	4.18
3862	4302	2.289195	ACAAGTAATTTCGCACGAGGGA	60.289	45.455	0.00	0.00	34.56	4.20
3863	4303	2.295253	AGTAATTTCGCACGAGGGAG	57.705	50.000	0.00	0.00	38.03	4.30
3864	4304	1.549170	AGTAATTTCGCACGAGGGAGT	59.451	47.619	0.00	0.00	38.03	3.85
3865	4305	2.756760	AGTAATTTCGCACGAGGGAGTA	59.243	45.455	0.00	0.00	38.03	2.59
3866	4306	2.981859	AATTTCGCACGAGGGAGTAT	57.018	45.000	0.00	0.00	38.03	2.12
3867	4307	4.581824	AGTAATTTCGCACGAGGGAGTATA	59.418	41.667	0.00	0.00	38.03	1.47
3868	4308	4.602340	AATTTCGCACGAGGGAGTATAT	57.398	40.909	0.00	0.00	38.03	0.86
3869	4309	5.717078	AATTTCGCACGAGGGAGTATATA	57.283	39.130	0.00	0.00	38.03	0.86
3870	4310	4.494350	TTTCGCACGAGGGAGTATATAC	57.506	45.455	4.60	4.60	38.03	1.47
4016	4456	7.007636	CAGTTTTGACAACTAACACCGTTAAAC	59.992	37.037	5.73	0.00	0.00	2.01
4044	4484	5.005094	CGTGAAAAGTCCATTTTACCCCTA	58.995	41.667	0.00	0.00	41.24	3.53
4243	5971	4.324641	GGAGGAAATTCTCCCAAGCTAAGT	60.325	45.833	2.36	0.00	46.81	2.24
4246	5974	5.250774	AGGAAATTCTCCCAAGCTAAGTACA	59.749	40.000	0.00	0.00	46.81	2.90
4266	5994	8.588290	AGTACATGTGAGAAGAGAAGAATAGT	57.412	34.615	9.11	0.00	0.00	2.12
4321	6175	4.630505	TGACTCAGCAGTAGTAGAAGTACG	59.369	45.833	0.00	0.00	30.99	3.67
4585	8173	2.765807	CCTCCCTCCATGCCTCGT	60.766	66.667	0.00	0.00	0.00	4.18
4825	8419	2.191981	ACTCCCTCCGTCCCATAATT	57.808	50.000	0.00	0.00	0.00	1.40
4845	8439	5.888412	ATTTAAGACGTTTTTGCAAGCTG	57.112	34.783	0.00	0.00	0.00	4.24
4846	8440	2.939460	AAGACGTTTTTGCAAGCTGT	57.061	40.000	0.00	0.00	0.00	4.40
4847	8441	2.939460	AGACGTTTTTGCAAGCTGTT	57.061	40.000	0.00	0.00	0.00	3.16
4895	8568	3.145286	GGACGGAGGGAGTACATACTAC	58.855	54.545	0.00	0.00	36.50	2.73
4896	8569	3.181446	GGACGGAGGGAGTACATACTACT	60.181	52.174	1.33	0.00	37.32	2.57
4897	8570	4.064388	GACGGAGGGAGTACATACTACTC	58.936	52.174	11.88	11.88	42.28	2.59
4904	8577	4.084011	GAGTACATACTACTCCCTCCGT	57.916	50.000	0.00	0.00	38.33	4.69
4905	8578	4.459330	GAGTACATACTACTCCCTCCGTT	58.541	47.826	0.00	0.00	38.33	4.44
4906	8579	4.459330	AGTACATACTACTCCCTCCGTTC	58.541	47.826	0.00	0.00	34.13	3.95
4907	8580	2.664015	ACATACTACTCCCTCCGTTCC	58.336	52.381	0.00	0.00	0.00	3.62
4908	8581	2.244252	ACATACTACTCCCTCCGTTCCT	59.756	50.000	0.00	0.00	0.00	3.36
4909	8582	3.461085	ACATACTACTCCCTCCGTTCCTA	59.539	47.826	0.00	0.00	0.00	2.94
4910	8583	4.079558	ACATACTACTCCCTCCGTTCCTAA	60.080	45.833	0.00	0.00	0.00	2.69
4911	8584	3.463048	ACTACTCCCTCCGTTCCTAAA	57.537	47.619	0.00	0.00	0.00	1.85
4912	8585	3.991683	ACTACTCCCTCCGTTCCTAAAT	58.008	45.455	0.00	0.00	0.00	1.40
4913	8586	5.134725	ACTACTCCCTCCGTTCCTAAATA	57.865	43.478	0.00	0.00	0.00	1.40
4914	8587	5.713807	ACTACTCCCTCCGTTCCTAAATAT	58.286	41.667	0.00	0.00	0.00	1.28
4915	8588	6.856757	ACTACTCCCTCCGTTCCTAAATATA	58.143	40.000	0.00	0.00	0.00	0.86
4916	8589	7.300658	ACTACTCCCTCCGTTCCTAAATATAA	58.699	38.462	0.00	0.00	0.00	0.98
4917	8590	6.667558	ACTCCCTCCGTTCCTAAATATAAG	57.332	41.667	0.00	0.00	0.00	1.73
4918	8591	6.141790	ACTCCCTCCGTTCCTAAATATAAGT	58.858	40.000	0.00	0.00	0.00	2.24
4919	8592	6.267242	ACTCCCTCCGTTCCTAAATATAAGTC	59.733	42.308	0.00	0.00	0.00	3.01
4920	8593	6.379579	TCCCTCCGTTCCTAAATATAAGTCT	58.620	40.000	0.00	0.00	0.00	3.24
4921	8594	6.842807	TCCCTCCGTTCCTAAATATAAGTCTT	59.157	38.462	0.00	0.00	0.00	3.01
4922	8595	7.346436	TCCCTCCGTTCCTAAATATAAGTCTTT	59.654	37.037	0.00	0.00	0.00	2.52
4923	8596	7.991460	CCCTCCGTTCCTAAATATAAGTCTTTT	59.009	37.037	0.00	0.00	0.00	2.27
4924	8597	9.392259	CCTCCGTTCCTAAATATAAGTCTTTTT	57.608	33.333	0.00	0.00	0.00	1.94
4941	8614	8.986929	AGTCTTTTTAGAGATTCCAATATGGG	57.013	34.615	0.00	0.00	38.32	4.00
4942	8615	7.503902	AGTCTTTTTAGAGATTCCAATATGGGC	59.496	37.037	0.00	0.00	38.32	5.36
4943	8616	7.503902	GTCTTTTTAGAGATTCCAATATGGGCT	59.496	37.037	0.00	0.00	38.32	5.19
4944	8617	8.723365	TCTTTTTAGAGATTCCAATATGGGCTA	58.277	33.333	0.00	0.00	38.32	3.93
4945	8618	8.691661	TTTTTAGAGATTCCAATATGGGCTAC	57.308	34.615	0.00	0.00	38.32	3.58
4946	8619	7.387265	TTTAGAGATTCCAATATGGGCTACA	57.613	36.000	0.00	0.00	38.32	2.74
4947	8620	7.574021	TTAGAGATTCCAATATGGGCTACAT	57.426	36.000	0.00	0.46	43.68	2.29
4948	8621	8.679344	TTAGAGATTCCAATATGGGCTACATA	57.321	34.615	0.00	4.54	45.60	2.29
4949	8622	6.951971	AGAGATTCCAATATGGGCTACATAC	58.048	40.000	0.00	0.00	44.41	2.39
4950	8623	6.732862	AGAGATTCCAATATGGGCTACATACT	59.267	38.462	0.00	0.00	44.41	2.12
4951	8624	6.715280	AGATTCCAATATGGGCTACATACTG	58.285	40.000	0.00	4.24	44.41	2.74
4952	8625	6.501805	AGATTCCAATATGGGCTACATACTGA	59.498	38.462	10.49	3.74	44.41	3.41
4953	8626	6.702449	TTCCAATATGGGCTACATACTGAT	57.298	37.500	10.49	0.00	44.41	2.90
4954	8627	6.053632	TCCAATATGGGCTACATACTGATG	57.946	41.667	10.49	5.86	44.41	3.07
4955	8628	5.547666	TCCAATATGGGCTACATACTGATGT	59.452	40.000	10.49	0.00	44.41	3.06
4956	8629	6.728632	TCCAATATGGGCTACATACTGATGTA	59.271	38.462	10.49	0.00	44.41	2.29
4957	8630	7.402941	TCCAATATGGGCTACATACTGATGTAT	59.597	37.037	10.49	0.00	44.41	2.29
4958	8631	8.704668	CCAATATGGGCTACATACTGATGTATA	58.295	37.037	10.49	0.00	44.41	1.47
4963	8636	8.521170	TGGGCTACATACTGATGTATATAGAC	57.479	38.462	5.89	3.11	45.42	2.59
4964	8637	7.282450	TGGGCTACATACTGATGTATATAGACG	59.718	40.741	5.89	0.00	42.33	4.18
4965	8638	7.282675	GGGCTACATACTGATGTATATAGACGT	59.717	40.741	5.89	0.00	42.33	4.34
4966	8639	9.322773	GGCTACATACTGATGTATATAGACGTA	57.677	37.037	5.89	0.00	45.42	3.57
4986	8659	8.189460	AGACGTATTTTAGAGTGTAGATTCACC	58.811	37.037	0.00	0.00	38.91	4.02
4987	8660	7.263496	ACGTATTTTAGAGTGTAGATTCACCC	58.737	38.462	0.00	0.00	38.91	4.61
4988	8661	7.093640	ACGTATTTTAGAGTGTAGATTCACCCA	60.094	37.037	0.00	0.00	38.91	4.51
4989	8662	7.926555	CGTATTTTAGAGTGTAGATTCACCCAT	59.073	37.037	0.00	0.00	38.91	4.00
4990	8663	9.614792	GTATTTTAGAGTGTAGATTCACCCATT	57.385	33.333	0.00	0.00	38.91	3.16
4992	8665	8.934023	TTTTAGAGTGTAGATTCACCCATTTT	57.066	30.769	0.00	0.00	38.91	1.82
4993	8666	7.921786	TTAGAGTGTAGATTCACCCATTTTG	57.078	36.000	0.00	0.00	38.91	2.44
4994	8667	4.702131	AGAGTGTAGATTCACCCATTTTGC	59.298	41.667	0.00	0.00	38.91	3.68
4995	8668	4.666512	AGTGTAGATTCACCCATTTTGCT	58.333	39.130	0.00	0.00	38.91	3.91
4996	8669	4.702131	AGTGTAGATTCACCCATTTTGCTC	59.298	41.667	0.00	0.00	38.91	4.26
4997	8670	4.702131	GTGTAGATTCACCCATTTTGCTCT	59.298	41.667	0.00	0.00	32.81	4.09
4998	8671	4.701651	TGTAGATTCACCCATTTTGCTCTG	59.298	41.667	0.00	0.00	0.00	3.35
4999	8672	3.771216	AGATTCACCCATTTTGCTCTGT	58.229	40.909	0.00	0.00	0.00	3.41
5000	8673	4.922206	AGATTCACCCATTTTGCTCTGTA	58.078	39.130	0.00	0.00	0.00	2.74
5001	8674	5.513233	AGATTCACCCATTTTGCTCTGTAT	58.487	37.500	0.00	0.00	0.00	2.29
5002	8675	5.359009	AGATTCACCCATTTTGCTCTGTATG	59.641	40.000	0.00	0.00	0.00	2.39
5003	8676	4.032960	TCACCCATTTTGCTCTGTATGT	57.967	40.909	0.00	0.00	0.00	2.29
5004	8677	5.172687	TCACCCATTTTGCTCTGTATGTA	57.827	39.130	0.00	0.00	0.00	2.29
5005	8678	5.185454	TCACCCATTTTGCTCTGTATGTAG	58.815	41.667	0.00	0.00	0.00	2.74
5006	8679	4.943705	CACCCATTTTGCTCTGTATGTAGT	59.056	41.667	0.00	0.00	0.00	2.73
5007	8680	5.065218	CACCCATTTTGCTCTGTATGTAGTC	59.935	44.000	0.00	0.00	0.00	2.59
5008	8681	4.576463	CCCATTTTGCTCTGTATGTAGTCC	59.424	45.833	0.00	0.00	0.00	3.85
5009	8682	5.185454	CCATTTTGCTCTGTATGTAGTCCA	58.815	41.667	0.00	0.00	0.00	4.02
5010	8683	5.824624	CCATTTTGCTCTGTATGTAGTCCAT	59.175	40.000	0.00	0.00	37.58	3.41
5011	8684	6.992123	CCATTTTGCTCTGTATGTAGTCCATA	59.008	38.462	0.00	0.00	34.86	2.74
5012	8685	7.663081	CCATTTTGCTCTGTATGTAGTCCATAT	59.337	37.037	0.00	0.00	38.29	1.78
5013	8686	9.060347	CATTTTGCTCTGTATGTAGTCCATATT	57.940	33.333	0.00	0.00	38.29	1.28
5014	8687	8.437360	TTTTGCTCTGTATGTAGTCCATATTG	57.563	34.615	0.00	0.00	38.29	1.90
5015	8688	6.101650	TGCTCTGTATGTAGTCCATATTGG	57.898	41.667	0.00	0.00	38.29	3.16
5016	8689	5.838521	TGCTCTGTATGTAGTCCATATTGGA	59.161	40.000	0.00	0.00	45.98	3.53
5049	8722	8.959705	AAAAGACTTATATTTAGGAACGGAGG	57.040	34.615	0.00	0.00	0.00	4.30
5050	8723	6.667558	AGACTTATATTTAGGAACGGAGGG	57.332	41.667	0.00	0.00	0.00	4.30
5051	8724	6.379579	AGACTTATATTTAGGAACGGAGGGA	58.620	40.000	0.00	0.00	0.00	4.20
5052	8725	6.494146	AGACTTATATTTAGGAACGGAGGGAG	59.506	42.308	0.00	0.00	0.00	4.30
5053	8726	5.011840	ACTTATATTTAGGAACGGAGGGAGC	59.988	44.000	0.00	0.00	0.00	4.70
5054	8727	1.580059	ATTTAGGAACGGAGGGAGCA	58.420	50.000	0.00	0.00	0.00	4.26
5072	8745	4.310769	GAGCATGTATTAGTAGCTGGGTG	58.689	47.826	0.00	0.00	35.36	4.61
5083	8756	2.257353	GCTGGGTGCTGTAAGTTGG	58.743	57.895	0.00	0.00	38.95	3.77
5118	8928	3.000684	TGTCGACTAGTCCAGCAGTAT	57.999	47.619	17.92	0.00	0.00	2.12
5132	8942	7.728083	AGTCCAGCAGTATTCTAGATTAGTCAT	59.272	37.037	0.00	0.00	0.00	3.06
5227	9037	3.671410	TGTGGGGCTGGGATTGGG	61.671	66.667	0.00	0.00	0.00	4.12
5235	9045	1.068121	GCTGGGATTGGGCCTAGTAT	58.932	55.000	4.53	0.00	38.65	2.12
5299	9109	3.054287	TGGACTAAGGTTGTTTGGTGACA	60.054	43.478	0.00	0.00	39.83	3.58
5364	9174	6.542005	CCATCACACTAATAATACCACAAGCA	59.458	38.462	0.00	0.00	0.00	3.91
5367	9177	7.812648	TCACACTAATAATACCACAAGCAAAC	58.187	34.615	0.00	0.00	0.00	2.93
5442	9255	4.058817	CAACTACTGGTGGACTCAAGTTC	58.941	47.826	0.00	0.00	0.00	3.01
5718	9549	4.790140	CAGCTTGCTGATAAATTTGACGAC	59.210	41.667	16.78	0.00	0.00	4.34
6160	10001	1.496857	TGATTTGACCCACCCACTTCA	59.503	47.619	0.00	0.00	0.00	3.02
6223	10070	3.389329	TCTTCTGAGGGCATATGTTCTCC	59.611	47.826	18.25	10.13	0.00	3.71
6365	11637	7.599171	TGGGTTAAAATTGCTAAAGCTTAGAC	58.401	34.615	0.00	0.00	42.66	2.59
6570	11842	6.406692	TGCAAGTCCTCCAGTAAGTATATC	57.593	41.667	0.00	0.00	0.00	1.63
7296	12776	8.477419	TGGAAGAGAAAAATTGGTAGAAACAT	57.523	30.769	0.00	0.00	0.00	2.71
7550	13032	5.453198	GGAACCTTGAACATTTGAACCATGT	60.453	40.000	0.00	0.00	36.36	3.21
7552	13034	6.723298	ACCTTGAACATTTGAACCATGTTA	57.277	33.333	0.00	0.00	43.47	2.41
7943	13535	7.227512	GCACTGAGATGCTTTTAGGTTACATAT	59.772	37.037	0.00	0.00	42.62	1.78
8563	14409	0.475828	AAGTGTCCACCCCCTTAGCT	60.476	55.000	0.00	0.00	0.00	3.32
8565	14411	0.404426	GTGTCCACCCCCTTAGCTTT	59.596	55.000	0.00	0.00	0.00	3.51
8567	14413	0.323451	GTCCACCCCCTTAGCTTTGG	60.323	60.000	0.00	0.00	0.00	3.28
8568	14414	0.476808	TCCACCCCCTTAGCTTTGGA	60.477	55.000	0.00	0.00	0.00	3.53
8569	14415	0.407918	CCACCCCCTTAGCTTTGGAA	59.592	55.000	0.00	0.00	0.00	3.53
8570	14416	1.007118	CCACCCCCTTAGCTTTGGAAT	59.993	52.381	0.00	0.00	0.00	3.01
8571	14417	2.243736	CCACCCCCTTAGCTTTGGAATA	59.756	50.000	0.00	0.00	0.00	1.75
8572	14418	3.117131	CCACCCCCTTAGCTTTGGAATAT	60.117	47.826	0.00	0.00	0.00	1.28
8573	14419	4.105697	CCACCCCCTTAGCTTTGGAATATA	59.894	45.833	0.00	0.00	0.00	0.86
8574	14420	5.316987	CACCCCCTTAGCTTTGGAATATAG	58.683	45.833	0.00	0.00	0.00	1.31
8575	14421	4.202577	ACCCCCTTAGCTTTGGAATATAGC	60.203	45.833	0.00	0.00	35.16	2.97
8576	14422	4.202567	CCCCCTTAGCTTTGGAATATAGCA	60.203	45.833	0.00	0.00	37.37	3.49
8577	14423	4.762251	CCCCTTAGCTTTGGAATATAGCAC	59.238	45.833	0.00	0.00	37.37	4.40
8578	14424	5.456763	CCCCTTAGCTTTGGAATATAGCACT	60.457	44.000	0.00	0.00	37.37	4.40
8579	14425	6.239887	CCCCTTAGCTTTGGAATATAGCACTA	60.240	42.308	0.00	0.00	37.37	2.74
8580	14426	7.224297	CCCTTAGCTTTGGAATATAGCACTAA	58.776	38.462	0.00	0.00	37.37	2.24
8581	14427	7.719633	CCCTTAGCTTTGGAATATAGCACTAAA	59.280	37.037	0.00	0.00	37.37	1.85
8582	14428	9.120538	CCTTAGCTTTGGAATATAGCACTAAAA	57.879	33.333	0.00	0.00	37.37	1.52
8619	14465	8.488764	GGAATATCGTTTGCTTATGAGTTACTC	58.511	37.037	5.27	5.27	0.00	2.59
8620	14466	7.948278	ATATCGTTTGCTTATGAGTTACTCC	57.052	36.000	10.10	0.00	0.00	3.85
8622	14468	4.222145	TCGTTTGCTTATGAGTTACTCCCT	59.778	41.667	10.10	0.00	0.00	4.20
8623	14469	4.567159	CGTTTGCTTATGAGTTACTCCCTC	59.433	45.833	10.10	0.00	0.00	4.30
8624	14470	4.755266	TTGCTTATGAGTTACTCCCTCC	57.245	45.455	10.10	0.00	0.00	4.30
8626	14472	2.694109	GCTTATGAGTTACTCCCTCCGT	59.306	50.000	10.10	0.00	0.00	4.69
8627	14473	3.243468	GCTTATGAGTTACTCCCTCCGTC	60.243	52.174	10.10	0.00	0.00	4.79
8628	14474	1.777941	ATGAGTTACTCCCTCCGTCC	58.222	55.000	10.10	0.00	0.00	4.79
8629	14475	0.406750	TGAGTTACTCCCTCCGTCCA	59.593	55.000	10.10	0.00	0.00	4.02
8630	14476	1.203087	TGAGTTACTCCCTCCGTCCAA	60.203	52.381	10.10	0.00	0.00	3.53
8631	14477	1.897802	GAGTTACTCCCTCCGTCCAAA	59.102	52.381	0.00	0.00	0.00	3.28
8632	14478	2.301009	GAGTTACTCCCTCCGTCCAAAA	59.699	50.000	0.00	0.00	0.00	2.44
8633	14479	2.707257	AGTTACTCCCTCCGTCCAAAAA	59.293	45.455	0.00	0.00	0.00	1.94
8634	14480	3.329814	AGTTACTCCCTCCGTCCAAAAAT	59.670	43.478	0.00	0.00	0.00	1.82
8635	14481	4.533311	AGTTACTCCCTCCGTCCAAAAATA	59.467	41.667	0.00	0.00	0.00	1.40
8636	14482	3.345508	ACTCCCTCCGTCCAAAAATAC	57.654	47.619	0.00	0.00	0.00	1.89
8637	14483	2.910977	ACTCCCTCCGTCCAAAAATACT	59.089	45.455	0.00	0.00	0.00	2.12
8638	14484	3.329814	ACTCCCTCCGTCCAAAAATACTT	59.670	43.478	0.00	0.00	0.00	2.24
8639	14485	3.681593	TCCCTCCGTCCAAAAATACTTG	58.318	45.455	0.00	0.00	0.00	3.16
8640	14486	3.073356	TCCCTCCGTCCAAAAATACTTGT	59.927	43.478	0.00	0.00	0.00	3.16
8641	14487	3.439129	CCCTCCGTCCAAAAATACTTGTC	59.561	47.826	0.00	0.00	0.00	3.18
8642	14488	4.069304	CCTCCGTCCAAAAATACTTGTCA	58.931	43.478	0.00	0.00	0.00	3.58
8643	14489	4.700213	CCTCCGTCCAAAAATACTTGTCAT	59.300	41.667	0.00	0.00	0.00	3.06
8644	14490	5.163754	CCTCCGTCCAAAAATACTTGTCATC	60.164	44.000	0.00	0.00	0.00	2.92
8645	14491	5.309638	TCCGTCCAAAAATACTTGTCATCA	58.690	37.500	0.00	0.00	0.00	3.07
8646	14492	5.765677	TCCGTCCAAAAATACTTGTCATCAA	59.234	36.000	0.00	0.00	0.00	2.57
8647	14493	6.263392	TCCGTCCAAAAATACTTGTCATCAAA	59.737	34.615	0.00	0.00	32.87	2.69
8648	14494	6.920758	CCGTCCAAAAATACTTGTCATCAAAA	59.079	34.615	0.00	0.00	32.87	2.44
8649	14495	7.598493	CCGTCCAAAAATACTTGTCATCAAAAT	59.402	33.333	0.00	0.00	32.87	1.82
8650	14496	8.427012	CGTCCAAAAATACTTGTCATCAAAATG	58.573	33.333	0.00	0.00	32.87	2.32
8651	14497	8.711457	GTCCAAAAATACTTGTCATCAAAATGG	58.289	33.333	0.00	0.00	33.42	3.16
8652	14498	8.646004	TCCAAAAATACTTGTCATCAAAATGGA	58.354	29.630	0.00	0.00	33.42	3.41
8653	14499	9.439500	CCAAAAATACTTGTCATCAAAATGGAT	57.561	29.630	0.00	0.00	33.42	3.41
8661	14507	9.918630	ACTTGTCATCAAAATGGATAAAAAGAG	57.081	29.630	0.00	0.00	33.42	2.85
8717	14563	6.790232	TCCCCTTTTATCCATTTTGATGAC	57.210	37.500	0.00	0.00	0.00	3.06
8718	14564	6.259893	TCCCCTTTTATCCATTTTGATGACA	58.740	36.000	0.00	0.00	0.00	3.58
8719	14565	6.728164	TCCCCTTTTATCCATTTTGATGACAA	59.272	34.615	0.00	0.00	0.00	3.18
8720	14566	7.043565	CCCCTTTTATCCATTTTGATGACAAG	58.956	38.462	0.00	0.00	37.32	3.16
8721	14567	7.310609	CCCCTTTTATCCATTTTGATGACAAGT	60.311	37.037	0.00	0.00	37.32	3.16
8722	14568	8.748412	CCCTTTTATCCATTTTGATGACAAGTA	58.252	33.333	0.00	0.00	37.32	2.24
8728	14574	8.915871	ATCCATTTTGATGACAAGTATTTTCG	57.084	30.769	0.00	0.00	37.32	3.46
8729	14575	7.312154	TCCATTTTGATGACAAGTATTTTCGG	58.688	34.615	0.00	0.00	37.32	4.30
8730	14576	7.175816	TCCATTTTGATGACAAGTATTTTCGGA	59.824	33.333	0.00	0.00	37.32	4.55
8731	14577	7.273381	CCATTTTGATGACAAGTATTTTCGGAC	59.727	37.037	0.00	0.00	37.32	4.79
8732	14578	5.524511	TTGATGACAAGTATTTTCGGACG	57.475	39.130	0.00	0.00	0.00	4.79
8733	14579	4.811908	TGATGACAAGTATTTTCGGACGA	58.188	39.130	0.00	0.00	0.00	4.20
8734	14580	5.231702	TGATGACAAGTATTTTCGGACGAA	58.768	37.500	2.62	2.62	0.00	3.85
8735	14581	5.347635	TGATGACAAGTATTTTCGGACGAAG	59.652	40.000	7.25	0.00	35.38	3.79
8736	14582	3.991773	TGACAAGTATTTTCGGACGAAGG	59.008	43.478	7.25	0.00	35.38	3.46
8737	14583	3.332034	ACAAGTATTTTCGGACGAAGGG	58.668	45.455	7.25	0.00	35.38	3.95
8738	14584	3.007182	ACAAGTATTTTCGGACGAAGGGA	59.993	43.478	7.25	0.00	35.38	4.20
8739	14585	3.521947	AGTATTTTCGGACGAAGGGAG	57.478	47.619	7.25	0.00	35.38	4.30
8740	14586	2.830321	AGTATTTTCGGACGAAGGGAGT	59.170	45.455	7.25	0.00	35.38	3.85
8741	14587	4.019174	AGTATTTTCGGACGAAGGGAGTA	58.981	43.478	7.25	0.00	35.38	2.59
8742	14588	2.730550	TTTTCGGACGAAGGGAGTAC	57.269	50.000	7.25	0.00	35.38	2.73
8743	14589	1.915141	TTTCGGACGAAGGGAGTACT	58.085	50.000	7.25	0.00	35.38	2.73
8749	14595	3.679917	CGGACGAAGGGAGTACTAGTACA	60.680	52.174	29.87	0.00	38.48	2.90
8750	14596	3.625313	GGACGAAGGGAGTACTAGTACAC	59.375	52.174	29.87	24.39	38.48	2.90
8940	14787	5.525378	GTGCTACTAATCAAGTAATGCTGCT	59.475	40.000	0.00	0.00	40.21	4.24
9006	14855	9.495572	CTACATTTCAAAGATAGGAATAGACCC	57.504	37.037	0.00	0.00	0.00	4.46
9012	14890	8.618240	TCAAAGATAGGAATAGACCCTGTTTA	57.382	34.615	0.00	0.00	35.30	2.01
9013	14891	9.053472	TCAAAGATAGGAATAGACCCTGTTTAA	57.947	33.333	0.00	0.00	35.30	1.52
9017	14895	9.398921	AGATAGGAATAGACCCTGTTTAATGAT	57.601	33.333	0.00	0.00	35.30	2.45
9030	14908	9.197694	CCCTGTTTAATGATTAATCTCTACTCG	57.802	37.037	16.24	0.22	0.00	4.18
9039	14917	9.693739	ATGATTAATCTCTACTCGTAGGATCAT	57.306	33.333	16.24	0.00	34.06	2.45
9044	14922	4.757657	TCTCTACTCGTAGGATCATTGAGC	59.242	45.833	8.65	0.00	34.06	4.26
9046	14924	4.887655	TCTACTCGTAGGATCATTGAGCAA	59.112	41.667	4.07	0.00	34.06	3.91
9106	14984	6.534634	ACTTGCCGATTAGCCTATTAATCTT	58.465	36.000	0.00	0.00	37.72	2.40
9113	14991	8.192110	CCGATTAGCCTATTAATCTTCTACTCC	58.808	40.741	0.00	0.00	37.72	3.85
9115	14993	5.986501	AGCCTATTAATCTTCTACTCCCG	57.013	43.478	0.00	0.00	0.00	5.14
9117	14995	6.257586	AGCCTATTAATCTTCTACTCCCGAT	58.742	40.000	0.00	0.00	0.00	4.18
9118	14996	7.411808	AGCCTATTAATCTTCTACTCCCGATA	58.588	38.462	0.00	0.00	0.00	2.92
9119	14997	7.894364	AGCCTATTAATCTTCTACTCCCGATAA	59.106	37.037	0.00	0.00	0.00	1.75
9121	14999	9.857957	CCTATTAATCTTCTACTCCCGATAAAC	57.142	37.037	0.00	0.00	0.00	2.01
9123	15001	7.664552	TTAATCTTCTACTCCCGATAAACCA	57.335	36.000	0.00	0.00	0.00	3.67
9126	15004	6.555463	TCTTCTACTCCCGATAAACCAATT	57.445	37.500	0.00	0.00	0.00	2.32
9127	15005	7.664552	TCTTCTACTCCCGATAAACCAATTA	57.335	36.000	0.00	0.00	0.00	1.40
9129	15007	8.711170	TCTTCTACTCCCGATAAACCAATTAAT	58.289	33.333	0.00	0.00	0.00	1.40
9131	15009	8.671384	TCTACTCCCGATAAACCAATTAATTG	57.329	34.615	19.40	19.40	37.52	2.32
9132	15010	8.269317	TCTACTCCCGATAAACCAATTAATTGT	58.731	33.333	23.24	10.41	36.06	2.71
9133	15011	7.712204	ACTCCCGATAAACCAATTAATTGTT	57.288	32.000	23.24	15.58	36.06	2.83
9134	15012	8.129496	ACTCCCGATAAACCAATTAATTGTTT	57.871	30.769	23.24	22.21	36.06	2.83
9135	15013	8.032451	ACTCCCGATAAACCAATTAATTGTTTG	58.968	33.333	23.24	12.80	36.06	2.93
9136	15014	8.123639	TCCCGATAAACCAATTAATTGTTTGA	57.876	30.769	23.24	11.88	36.06	2.69
9171	15056	9.515226	TTAATTTGCCGATTAGCCTATTAATCT	57.485	29.630	0.00	0.00	37.72	2.40
9176	15061	8.079211	TGCCGATTAGCCTATTAATCTTCTAT	57.921	34.615	0.00	0.00	37.72	1.98
9178	15063	9.384764	GCCGATTAGCCTATTAATCTTCTATTT	57.615	33.333	0.00	0.00	37.72	1.40
9189	15074	8.986929	ATTAATCTTCTATTTGCTAGCCAACT	57.013	30.769	13.29	3.88	31.97	3.16
9191	15076	4.517285	TCTTCTATTTGCTAGCCAACTGG	58.483	43.478	13.29	3.64	31.97	4.00
9195	15080	3.669939	ATTTGCTAGCCAACTGGGTAT	57.330	42.857	13.29	0.00	45.92	2.73
9196	15081	2.418368	TTGCTAGCCAACTGGGTATG	57.582	50.000	13.29	4.58	45.92	2.39
9197	15082	1.578897	TGCTAGCCAACTGGGTATGA	58.421	50.000	13.29	0.00	45.92	2.15
9198	15083	1.486310	TGCTAGCCAACTGGGTATGAG	59.514	52.381	13.29	0.49	45.92	2.90
9209	15094	6.408092	CCAACTGGGTATGAGCTAATGACTAA	60.408	42.308	0.00	0.00	0.00	2.24
9254	15140	8.882415	TTAACCTATTAATCTCCTAAACGCTG	57.118	34.615	0.00	0.00	0.00	5.18
9261	15147	1.001633	TCTCCTAAACGCTGTCCAACC	59.998	52.381	0.00	0.00	0.00	3.77
9271	15157	2.738643	CGCTGTCCAACCGATTAGTCAT	60.739	50.000	0.00	0.00	0.00	3.06

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	0.954452	GCTCCCTCGGCAAAATATGG	59.046	55.000	0.00	0.00	0.00	2.74
1	2	1.605710	CTGCTCCCTCGGCAAAATATG	59.394	52.381	0.00	0.00	39.30	1.78
2	3	1.972872	CTGCTCCCTCGGCAAAATAT	58.027	50.000	0.00	0.00	39.30	1.28
3	4	0.748005	GCTGCTCCCTCGGCAAAATA	60.748	55.000	0.00	0.00	39.30	1.40
4	5	2.048603	GCTGCTCCCTCGGCAAAAT	61.049	57.895	0.00	0.00	39.30	1.82
5	6	2.672996	GCTGCTCCCTCGGCAAAA	60.673	61.111	0.00	0.00	39.30	2.44
6	7	3.952508	TGCTGCTCCCTCGGCAAA	61.953	61.111	0.00	0.00	44.57	3.68
26	27	3.813724	GCCCCTGATGGACCCCAG	61.814	72.222	4.46	4.46	36.75	4.45
27	28	3.988151	ATGCCCCTGATGGACCCCA	62.988	63.158	0.00	0.00	38.19	4.96
28	29	3.105928	ATGCCCCTGATGGACCCC	61.106	66.667	0.00	0.00	35.39	4.95
29	30	2.196776	CATGCCCCTGATGGACCC	59.803	66.667	0.00	0.00	35.39	4.46
30	31	2.196776	CCATGCCCCTGATGGACC	59.803	66.667	0.00	0.00	42.81	4.46
31	32	1.723128	ATCCCATGCCCCTGATGGAC	61.723	60.000	1.63	0.00	42.81	4.02
32	33	1.387781	ATCCCATGCCCCTGATGGA	60.388	57.895	1.63	0.00	42.81	3.41
33	34	1.228769	CATCCCATGCCCCTGATGG	60.229	63.158	0.00	0.00	40.25	3.51
34	35	4.513777	CATCCCATGCCCCTGATG	57.486	61.111	0.00	0.00	0.00	3.07
46	47	1.494960	TTAAAATGGCAGGGCATCCC	58.505	50.000	8.89	0.00	45.90	3.85
47	48	2.501316	AGTTTAAAATGGCAGGGCATCC	59.499	45.455	8.89	0.00	0.00	3.51
48	49	3.893326	AGTTTAAAATGGCAGGGCATC	57.107	42.857	8.89	0.00	0.00	3.91
49	50	5.673514	CATAAGTTTAAAATGGCAGGGCAT	58.326	37.500	2.07	2.07	0.00	4.40
50	51	4.622695	GCATAAGTTTAAAATGGCAGGGCA	60.623	41.667	0.00	0.00	0.00	5.36
51	52	3.871006	GCATAAGTTTAAAATGGCAGGGC	59.129	43.478	0.00	0.00	0.00	5.19
52	53	4.162131	AGGCATAAGTTTAAAATGGCAGGG	59.838	41.667	20.61	0.00	45.71	4.45
53	54	5.343307	AGGCATAAGTTTAAAATGGCAGG	57.657	39.130	20.61	1.56	45.71	4.85
54	55	7.100458	ACTAGGCATAAGTTTAAAATGGCAG	57.900	36.000	20.61	17.50	45.71	4.85
55	56	8.050325	TCTACTAGGCATAAGTTTAAAATGGCA	58.950	33.333	20.61	10.22	45.71	4.92
56	57	8.446599	TCTACTAGGCATAAGTTTAAAATGGC	57.553	34.615	14.07	14.07	44.17	4.40
66	67	8.474025	GCAGATCATAATCTACTAGGCATAAGT	58.526	37.037	0.00	0.00	40.38	2.24
67	68	7.925483	GGCAGATCATAATCTACTAGGCATAAG	59.075	40.741	0.00	0.00	40.38	1.73
68	69	7.621285	AGGCAGATCATAATCTACTAGGCATAA	59.379	37.037	0.00	0.00	40.38	1.90
69	70	7.069208	CAGGCAGATCATAATCTACTAGGCATA	59.931	40.741	0.00	0.00	40.38	3.14
70	71	5.963253	AGGCAGATCATAATCTACTAGGCAT	59.037	40.000	0.00	0.00	40.38	4.40
71	72	5.186603	CAGGCAGATCATAATCTACTAGGCA	59.813	44.000	0.00	0.00	40.38	4.75
72	73	5.186797	ACAGGCAGATCATAATCTACTAGGC	59.813	44.000	0.00	0.00	40.38	3.93
73	74	6.849085	ACAGGCAGATCATAATCTACTAGG	57.151	41.667	0.00	0.00	40.38	3.02
74	75	8.121305	AGAACAGGCAGATCATAATCTACTAG	57.879	38.462	0.00	0.00	40.38	2.57
75	76	8.484214	AAGAACAGGCAGATCATAATCTACTA	57.516	34.615	0.00	0.00	40.38	1.82
76	77	6.992664	AGAACAGGCAGATCATAATCTACT	57.007	37.500	0.00	0.00	40.38	2.57
77	78	7.519649	GCAAAGAACAGGCAGATCATAATCTAC	60.520	40.741	0.00	0.00	40.38	2.59
78	79	6.484643	GCAAAGAACAGGCAGATCATAATCTA	59.515	38.462	0.00	0.00	40.38	1.98
79	80	5.298777	GCAAAGAACAGGCAGATCATAATCT	59.701	40.000	0.00	0.00	43.24	2.40
80	81	5.298777	AGCAAAGAACAGGCAGATCATAATC	59.701	40.000	0.00	0.00	0.00	1.75
81	82	5.198965	AGCAAAGAACAGGCAGATCATAAT	58.801	37.500	0.00	0.00	0.00	1.28
82	83	4.592942	AGCAAAGAACAGGCAGATCATAA	58.407	39.130	0.00	0.00	0.00	1.90
83	84	4.226427	AGCAAAGAACAGGCAGATCATA	57.774	40.909	0.00	0.00	0.00	2.15
84	85	3.083122	AGCAAAGAACAGGCAGATCAT	57.917	42.857	0.00	0.00	0.00	2.45
85	86	2.555325	CAAGCAAAGAACAGGCAGATCA	59.445	45.455	0.00	0.00	0.00	2.92
86	87	2.555757	ACAAGCAAAGAACAGGCAGATC	59.444	45.455	0.00	0.00	0.00	2.75
87	88	2.590821	ACAAGCAAAGAACAGGCAGAT	58.409	42.857	0.00	0.00	0.00	2.90
88	89	2.057137	ACAAGCAAAGAACAGGCAGA	57.943	45.000	0.00	0.00	0.00	4.26
89	90	2.360165	AGAACAAGCAAAGAACAGGCAG	59.640	45.455	0.00	0.00	0.00	4.85
90	91	2.378038	AGAACAAGCAAAGAACAGGCA	58.622	42.857	0.00	0.00	0.00	4.75
91	92	3.118542	CAAGAACAAGCAAAGAACAGGC	58.881	45.455	0.00	0.00	0.00	4.85
92	93	3.118542	GCAAGAACAAGCAAAGAACAGG	58.881	45.455	0.00	0.00	0.00	4.00
93	94	3.795101	CAGCAAGAACAAGCAAAGAACAG	59.205	43.478	0.00	0.00	0.00	3.16
94	95	3.193267	ACAGCAAGAACAAGCAAAGAACA	59.807	39.130	0.00	0.00	0.00	3.18
95	96	3.774066	ACAGCAAGAACAAGCAAAGAAC	58.226	40.909	0.00	0.00	0.00	3.01
96	97	4.454728	AACAGCAAGAACAAGCAAAGAA	57.545	36.364	0.00	0.00	0.00	2.52
97	98	4.454728	AAACAGCAAGAACAAGCAAAGA	57.545	36.364	0.00	0.00	0.00	2.52
98	99	5.106987	ACAAAAACAGCAAGAACAAGCAAAG	60.107	36.000	0.00	0.00	0.00	2.77
99	100	4.754114	ACAAAAACAGCAAGAACAAGCAAA	59.246	33.333	0.00	0.00	0.00	3.68
100	101	4.152045	CACAAAAACAGCAAGAACAAGCAA	59.848	37.500	0.00	0.00	0.00	3.91
101	102	3.679025	CACAAAAACAGCAAGAACAAGCA	59.321	39.130	0.00	0.00	0.00	3.91
102	103	3.679502	ACACAAAAACAGCAAGAACAAGC	59.320	39.130	0.00	0.00	0.00	4.01
103	104	5.610975	CAACACAAAAACAGCAAGAACAAG	58.389	37.500	0.00	0.00	0.00	3.16
104	105	4.084118	GCAACACAAAAACAGCAAGAACAA	60.084	37.500	0.00	0.00	0.00	2.83
105	106	3.431572	GCAACACAAAAACAGCAAGAACA	59.568	39.130	0.00	0.00	0.00	3.18
106	107	3.679502	AGCAACACAAAAACAGCAAGAAC	59.320	39.130	0.00	0.00	0.00	3.01
107	108	3.679025	CAGCAACACAAAAACAGCAAGAA	59.321	39.130	0.00	0.00	0.00	2.52
108	109	3.056962	TCAGCAACACAAAAACAGCAAGA	60.057	39.130	0.00	0.00	0.00	3.02
109	110	3.252400	TCAGCAACACAAAAACAGCAAG	58.748	40.909	0.00	0.00	0.00	4.01
110	111	3.309961	TCAGCAACACAAAAACAGCAA	57.690	38.095	0.00	0.00	0.00	3.91
111	112	3.119209	TCATCAGCAACACAAAAACAGCA	60.119	39.130	0.00	0.00	0.00	4.41
112	113	3.446799	TCATCAGCAACACAAAAACAGC	58.553	40.909	0.00	0.00	0.00	4.40
113	114	5.283294	TGATCATCAGCAACACAAAAACAG	58.717	37.500	0.00	0.00	0.00	3.16
114	115	5.259832	TGATCATCAGCAACACAAAAACA	57.740	34.783	0.00	0.00	0.00	2.83
115	116	7.061441	CACTATGATCATCAGCAACACAAAAAC	59.939	37.037	12.53	0.00	0.00	2.43
116	117	7.085746	CACTATGATCATCAGCAACACAAAAA	58.914	34.615	12.53	0.00	0.00	1.94
117	118	6.207221	ACACTATGATCATCAGCAACACAAAA	59.793	34.615	12.53	0.00	0.00	2.44
118	119	5.706833	ACACTATGATCATCAGCAACACAAA	59.293	36.000	12.53	0.00	0.00	2.83
119	120	5.122711	CACACTATGATCATCAGCAACACAA	59.877	40.000	12.53	0.00	0.00	3.33
120	121	4.632688	CACACTATGATCATCAGCAACACA	59.367	41.667	12.53	0.00	0.00	3.72
121	122	4.633126	ACACACTATGATCATCAGCAACAC	59.367	41.667	12.53	0.00	0.00	3.32
122	123	4.835678	ACACACTATGATCATCAGCAACA	58.164	39.130	12.53	0.00	0.00	3.33
123	124	5.122869	ACAACACACTATGATCATCAGCAAC	59.877	40.000	12.53	0.00	0.00	4.17
124	125	5.122711	CACAACACACTATGATCATCAGCAA	59.877	40.000	12.53	0.00	0.00	3.91
125	126	4.632688	CACAACACACTATGATCATCAGCA	59.367	41.667	12.53	0.00	0.00	4.41
126	127	4.633126	ACACAACACACTATGATCATCAGC	59.367	41.667	12.53	0.00	0.00	4.26
127	128	5.446875	GCACACAACACACTATGATCATCAG	60.447	44.000	12.53	10.50	0.00	2.90
128	129	4.392754	GCACACAACACACTATGATCATCA	59.607	41.667	12.53	0.00	0.00	3.07
129	130	4.633126	AGCACACAACACACTATGATCATC	59.367	41.667	12.53	0.00	0.00	2.92
130	131	4.393990	CAGCACACAACACACTATGATCAT	59.606	41.667	13.81	13.81	0.00	2.45
131	132	3.747529	CAGCACACAACACACTATGATCA	59.252	43.478	0.00	0.00	0.00	2.92
132	133	3.748048	ACAGCACACAACACACTATGATC	59.252	43.478	0.00	0.00	0.00	2.92
133	134	3.743521	ACAGCACACAACACACTATGAT	58.256	40.909	0.00	0.00	0.00	2.45
134	135	3.130633	GACAGCACACAACACACTATGA	58.869	45.455	0.00	0.00	0.00	2.15
135	136	2.871633	TGACAGCACACAACACACTATG	59.128	45.455	0.00	0.00	0.00	2.23
136	137	3.192541	TGACAGCACACAACACACTAT	57.807	42.857	0.00	0.00	0.00	2.12
137	138	2.682155	TGACAGCACACAACACACTA	57.318	45.000	0.00	0.00	0.00	2.74
138	139	1.819928	TTGACAGCACACAACACACT	58.180	45.000	0.00	0.00	0.00	3.55
139	140	2.627863	TTTGACAGCACACAACACAC	57.372	45.000	0.00	0.00	0.00	3.82
140	141	2.159268	CCATTTGACAGCACACAACACA	60.159	45.455	0.00	0.00	0.00	3.72
141	142	2.462889	CCATTTGACAGCACACAACAC	58.537	47.619	0.00	0.00	0.00	3.32
142	143	1.408340	CCCATTTGACAGCACACAACA	59.592	47.619	0.00	0.00	0.00	3.33
143	144	1.408702	ACCCATTTGACAGCACACAAC	59.591	47.619	0.00	0.00	0.00	3.32
144	145	1.408340	CACCCATTTGACAGCACACAA	59.592	47.619	0.00	0.00	0.00	3.33
145	146	1.031235	CACCCATTTGACAGCACACA	58.969	50.000	0.00	0.00	0.00	3.72
146	147	0.314935	CCACCCATTTGACAGCACAC	59.685	55.000	0.00	0.00	0.00	3.82
147	148	0.106268	ACCACCCATTTGACAGCACA	60.106	50.000	0.00	0.00	0.00	4.57
148	149	1.904287	TACCACCCATTTGACAGCAC	58.096	50.000	0.00	0.00	0.00	4.40
149	150	2.158534	AGTTACCACCCATTTGACAGCA	60.159	45.455	0.00	0.00	0.00	4.41
150	151	2.488153	GAGTTACCACCCATTTGACAGC	59.512	50.000	0.00	0.00	0.00	4.40
151	152	3.081804	GGAGTTACCACCCATTTGACAG	58.918	50.000	0.00	0.00	38.79	3.51
152	153	2.443632	TGGAGTTACCACCCATTTGACA	59.556	45.455	0.00	0.00	44.64	3.58
153	154	3.149005	TGGAGTTACCACCCATTTGAC	57.851	47.619	0.00	0.00	44.64	3.18
164	165	4.825085	TCTTTCAAATGTGGTGGAGTTACC	59.175	41.667	0.00	0.00	41.24	2.85
165	166	5.763204	TCTCTTTCAAATGTGGTGGAGTTAC	59.237	40.000	0.00	0.00	0.00	2.50
166	167	5.935945	TCTCTTTCAAATGTGGTGGAGTTA	58.064	37.500	0.00	0.00	0.00	2.24
167	168	4.792068	TCTCTTTCAAATGTGGTGGAGTT	58.208	39.130	0.00	0.00	0.00	3.01
168	169	4.437682	TCTCTTTCAAATGTGGTGGAGT	57.562	40.909	0.00	0.00	0.00	3.85
169	170	5.005740	TCATCTCTTTCAAATGTGGTGGAG	58.994	41.667	0.00	0.00	0.00	3.86
170	171	4.984295	TCATCTCTTTCAAATGTGGTGGA	58.016	39.130	0.00	0.00	0.00	4.02
171	172	4.380233	GCTCATCTCTTTCAAATGTGGTGG	60.380	45.833	0.00	0.00	0.00	4.61
172	173	4.216902	TGCTCATCTCTTTCAAATGTGGTG	59.783	41.667	0.00	0.00	0.00	4.17
173	174	4.401022	TGCTCATCTCTTTCAAATGTGGT	58.599	39.130	0.00	0.00	0.00	4.16
174	175	4.698780	TCTGCTCATCTCTTTCAAATGTGG	59.301	41.667	0.00	0.00	0.00	4.17
175	176	5.874895	TCTGCTCATCTCTTTCAAATGTG	57.125	39.130	0.00	0.00	0.00	3.21
176	177	8.571461	TTAATCTGCTCATCTCTTTCAAATGT	57.429	30.769	0.00	0.00	0.00	2.71
177	178	8.675504	ACTTAATCTGCTCATCTCTTTCAAATG	58.324	33.333	0.00	0.00	0.00	2.32
178	179	8.804912	ACTTAATCTGCTCATCTCTTTCAAAT	57.195	30.769	0.00	0.00	0.00	2.32
179	180	9.155975	GTACTTAATCTGCTCATCTCTTTCAAA	57.844	33.333	0.00	0.00	0.00	2.69
180	181	8.535335	AGTACTTAATCTGCTCATCTCTTTCAA	58.465	33.333	0.00	0.00	0.00	2.69
181	182	8.072321	AGTACTTAATCTGCTCATCTCTTTCA	57.928	34.615	0.00	0.00	0.00	2.69
182	183	8.816144	CAAGTACTTAATCTGCTCATCTCTTTC	58.184	37.037	8.04	0.00	0.00	2.62
183	184	7.279758	GCAAGTACTTAATCTGCTCATCTCTTT	59.720	37.037	8.04	0.00	0.00	2.52
184	185	6.760770	GCAAGTACTTAATCTGCTCATCTCTT	59.239	38.462	8.04	0.00	0.00	2.85
185	186	6.127225	TGCAAGTACTTAATCTGCTCATCTCT	60.127	38.462	15.52	0.00	0.00	3.10
186	187	6.019156	GTGCAAGTACTTAATCTGCTCATCTC	60.019	42.308	15.52	0.02	0.00	2.75
187	188	5.814705	GTGCAAGTACTTAATCTGCTCATCT	59.185	40.000	15.52	0.00	0.00	2.90
188	189	5.582269	TGTGCAAGTACTTAATCTGCTCATC	59.418	40.000	15.52	6.41	0.00	2.92
189	190	5.352569	GTGTGCAAGTACTTAATCTGCTCAT	59.647	40.000	18.81	0.00	0.00	2.90
190	191	4.690748	GTGTGCAAGTACTTAATCTGCTCA	59.309	41.667	15.52	14.83	0.00	4.26
191	192	4.690748	TGTGTGCAAGTACTTAATCTGCTC	59.309	41.667	15.52	12.81	0.00	4.26
192	193	4.641396	TGTGTGCAAGTACTTAATCTGCT	58.359	39.130	15.52	0.00	0.00	4.24
193	194	5.147162	GTTGTGTGCAAGTACTTAATCTGC	58.853	41.667	8.04	8.68	34.94	4.26
194	195	5.238432	TGGTTGTGTGCAAGTACTTAATCTG	59.762	40.000	8.04	0.00	34.94	2.90
195	196	5.373222	TGGTTGTGTGCAAGTACTTAATCT	58.627	37.500	8.04	0.00	34.94	2.40
196	197	5.682943	TGGTTGTGTGCAAGTACTTAATC	57.317	39.130	8.04	0.00	34.94	1.75
197	198	6.127591	TGTTTGGTTGTGTGCAAGTACTTAAT	60.128	34.615	8.04	0.00	34.94	1.40
198	199	5.183331	TGTTTGGTTGTGTGCAAGTACTTAA	59.817	36.000	8.04	0.00	34.94	1.85
199	200	4.700692	TGTTTGGTTGTGTGCAAGTACTTA	59.299	37.500	8.04	0.00	34.94	2.24
200	201	3.508012	TGTTTGGTTGTGTGCAAGTACTT	59.492	39.130	1.12	1.12	34.94	2.24
201	202	3.085533	TGTTTGGTTGTGTGCAAGTACT	58.914	40.909	0.00	0.00	34.94	2.73
202	203	3.495670	TGTTTGGTTGTGTGCAAGTAC	57.504	42.857	0.00	0.00	34.94	2.73
203	204	3.508012	AGTTGTTTGGTTGTGTGCAAGTA	59.492	39.130	0.00	0.00	34.94	2.24
204	205	2.298729	AGTTGTTTGGTTGTGTGCAAGT	59.701	40.909	0.00	0.00	34.94	3.16
205	206	2.667481	CAGTTGTTTGGTTGTGTGCAAG	59.333	45.455	0.00	0.00	34.94	4.01
206	207	2.036475	ACAGTTGTTTGGTTGTGTGCAA	59.964	40.909	0.00	0.00	0.00	4.08
207	208	1.615883	ACAGTTGTTTGGTTGTGTGCA	59.384	42.857	0.00	0.00	0.00	4.57
208	209	1.991965	CACAGTTGTTTGGTTGTGTGC	59.008	47.619	0.00	0.00	36.92	4.57
209	210	1.991965	GCACAGTTGTTTGGTTGTGTG	59.008	47.619	5.50	0.00	42.13	3.82
210	211	1.892474	AGCACAGTTGTTTGGTTGTGT	59.108	42.857	5.50	0.00	42.13	3.72
211	212	2.652941	AGCACAGTTGTTTGGTTGTG	57.347	45.000	0.00	0.00	42.80	3.33
212	213	3.324993	CAAAGCACAGTTGTTTGGTTGT	58.675	40.909	0.00	0.00	33.81	3.32
213	214	2.094099	GCAAAGCACAGTTGTTTGGTTG	59.906	45.455	6.54	0.00	33.81	3.77
214	215	2.289320	TGCAAAGCACAGTTGTTTGGTT	60.289	40.909	6.54	0.00	34.97	3.67
215	216	1.274728	TGCAAAGCACAGTTGTTTGGT	59.725	42.857	6.54	0.00	31.71	3.67
216	217	2.007360	TGCAAAGCACAGTTGTTTGG	57.993	45.000	6.54	0.00	31.71	3.28
217	218	3.244345	CAGATGCAAAGCACAGTTGTTTG	59.756	43.478	0.00	1.32	43.04	2.93
218	219	3.450578	CAGATGCAAAGCACAGTTGTTT	58.549	40.909	0.00	0.00	43.04	2.83
219	220	2.800629	GCAGATGCAAAGCACAGTTGTT	60.801	45.455	0.00	0.00	43.04	2.83
220	221	1.269413	GCAGATGCAAAGCACAGTTGT	60.269	47.619	0.00	0.00	43.04	3.32
221	222	1.000607	AGCAGATGCAAAGCACAGTTG	60.001	47.619	7.68	0.00	43.04	3.16
222	223	1.268899	GAGCAGATGCAAAGCACAGTT	59.731	47.619	7.68	0.00	43.04	3.16
223	224	0.879765	GAGCAGATGCAAAGCACAGT	59.120	50.000	7.68	0.00	43.04	3.55
224	225	0.879090	TGAGCAGATGCAAAGCACAG	59.121	50.000	7.68	0.00	43.04	3.66
225	226	0.594602	GTGAGCAGATGCAAAGCACA	59.405	50.000	7.68	7.58	43.04	4.57
226	227	0.594602	TGTGAGCAGATGCAAAGCAC	59.405	50.000	7.68	9.71	43.04	4.40
227	228	0.594602	GTGTGAGCAGATGCAAAGCA	59.405	50.000	7.68	0.00	45.16	3.91
228	229	0.109412	GGTGTGAGCAGATGCAAAGC	60.109	55.000	7.68	0.00	45.16	3.51
229	230	1.531423	AGGTGTGAGCAGATGCAAAG	58.469	50.000	7.68	0.00	45.16	2.77
230	231	2.857186	TAGGTGTGAGCAGATGCAAA	57.143	45.000	7.68	0.00	45.16	3.68
231	232	2.857186	TTAGGTGTGAGCAGATGCAA	57.143	45.000	7.68	0.00	45.16	4.08
232	233	2.703416	CTTTAGGTGTGAGCAGATGCA	58.297	47.619	7.68	0.00	45.16	3.96
233	234	1.399791	GCTTTAGGTGTGAGCAGATGC	59.600	52.381	0.00	0.00	42.49	3.91
234	235	1.662629	CGCTTTAGGTGTGAGCAGATG	59.337	52.381	0.00	0.00	36.22	2.90
235	236	2.009042	GCGCTTTAGGTGTGAGCAGAT	61.009	52.381	0.00	0.00	36.22	2.90
236	237	0.670546	GCGCTTTAGGTGTGAGCAGA	60.671	55.000	0.00	0.00	36.22	4.26
237	238	0.950555	TGCGCTTTAGGTGTGAGCAG	60.951	55.000	9.73	0.00	36.22	4.24
238	239	0.533978	TTGCGCTTTAGGTGTGAGCA	60.534	50.000	9.73	0.00	36.22	4.26
239	240	0.591170	TTTGCGCTTTAGGTGTGAGC	59.409	50.000	9.73	0.00	0.00	4.26
240	241	1.601903	TGTTTGCGCTTTAGGTGTGAG	59.398	47.619	9.73	0.00	0.00	3.51
241	242	1.332375	GTGTTTGCGCTTTAGGTGTGA	59.668	47.619	9.73	0.00	0.00	3.58
242	243	1.064803	TGTGTTTGCGCTTTAGGTGTG	59.935	47.619	9.73	0.00	0.00	3.82
243	244	1.333619	CTGTGTTTGCGCTTTAGGTGT	59.666	47.619	9.73	0.00	0.00	4.16
244	245	1.334960	CCTGTGTTTGCGCTTTAGGTG	60.335	52.381	9.73	0.00	0.00	4.00
245	246	0.951558	CCTGTGTTTGCGCTTTAGGT	59.048	50.000	9.73	0.00	0.00	3.08
246	247	0.387239	GCCTGTGTTTGCGCTTTAGG	60.387	55.000	9.73	8.99	0.00	2.69
247	248	0.310543	TGCCTGTGTTTGCGCTTTAG	59.689	50.000	9.73	0.00	0.00	1.85
248	249	0.741326	TTGCCTGTGTTTGCGCTTTA	59.259	45.000	9.73	0.00	0.00	1.85
249	250	0.805711	GTTGCCTGTGTTTGCGCTTT	60.806	50.000	9.73	0.00	0.00	3.51
250	251	1.226945	GTTGCCTGTGTTTGCGCTT	60.227	52.632	9.73	0.00	0.00	4.68
251	252	2.412937	GTTGCCTGTGTTTGCGCT	59.587	55.556	9.73	0.00	0.00	5.92
252	253	2.658268	GGTTGCCTGTGTTTGCGC	60.658	61.111	0.00	0.00	0.00	6.09
253	254	0.459237	TTTGGTTGCCTGTGTTTGCG	60.459	50.000	0.00	0.00	0.00	4.85
254	255	1.006086	GTTTGGTTGCCTGTGTTTGC	58.994	50.000	0.00	0.00	0.00	3.68
255	256	2.376808	TGTTTGGTTGCCTGTGTTTG	57.623	45.000	0.00	0.00	0.00	2.93
256	257	3.625649	ATTGTTTGGTTGCCTGTGTTT	57.374	38.095	0.00	0.00	0.00	2.83
257	258	3.625649	AATTGTTTGGTTGCCTGTGTT	57.374	38.095	0.00	0.00	0.00	3.32
258	259	3.269178	CAAATTGTTTGGTTGCCTGTGT	58.731	40.909	0.00	0.00	37.01	3.72
259	260	2.031930	GCAAATTGTTTGGTTGCCTGTG	59.968	45.455	4.77	0.00	41.41	3.66
260	261	2.287769	GCAAATTGTTTGGTTGCCTGT	58.712	42.857	4.77	0.00	41.41	4.00
261	262	2.286872	TGCAAATTGTTTGGTTGCCTG	58.713	42.857	5.26	0.00	45.60	4.85
262	263	2.563702	CTGCAAATTGTTTGGTTGCCT	58.436	42.857	5.26	0.00	45.60	4.75
263	264	1.002576	GCTGCAAATTGTTTGGTTGCC	60.003	47.619	5.26	0.00	45.60	4.52
264	265	1.002576	GGCTGCAAATTGTTTGGTTGC	60.003	47.619	0.50	0.76	46.21	4.17
265	266	2.286872	TGGCTGCAAATTGTTTGGTTG	58.713	42.857	0.50	0.00	40.94	3.77
266	267	2.706339	TGGCTGCAAATTGTTTGGTT	57.294	40.000	0.50	0.00	40.94	3.67
267	268	2.369532	AGATGGCTGCAAATTGTTTGGT	59.630	40.909	0.50	0.00	40.94	3.67
268	269	2.739913	CAGATGGCTGCAAATTGTTTGG	59.260	45.455	0.50	0.00	40.94	3.28
269	270	3.655486	TCAGATGGCTGCAAATTGTTTG	58.345	40.909	0.50	0.00	42.01	2.93
270	271	3.863400	GCTCAGATGGCTGCAAATTGTTT	60.863	43.478	0.50	0.00	42.01	2.83
271	272	2.353406	GCTCAGATGGCTGCAAATTGTT	60.353	45.455	0.50	0.00	42.01	2.83
272	273	1.203994	GCTCAGATGGCTGCAAATTGT	59.796	47.619	0.50	0.00	42.01	2.71
273	274	1.470979	GGCTCAGATGGCTGCAAATTG	60.471	52.381	0.50	0.00	42.01	2.32
274	275	0.822164	GGCTCAGATGGCTGCAAATT	59.178	50.000	0.50	0.00	42.01	1.82
275	276	0.033405	AGGCTCAGATGGCTGCAAAT	60.033	50.000	0.50	0.00	42.01	2.32
276	277	0.251474	AAGGCTCAGATGGCTGCAAA	60.251	50.000	0.50	0.00	42.20	3.68
277	278	0.963856	CAAGGCTCAGATGGCTGCAA	60.964	55.000	0.50	0.00	42.20	4.08
278	279	1.378119	CAAGGCTCAGATGGCTGCA	60.378	57.895	0.50	0.00	42.20	4.41
279	280	0.465824	ATCAAGGCTCAGATGGCTGC	60.466	55.000	2.04	0.00	42.20	5.25
280	281	1.309950	CATCAAGGCTCAGATGGCTG	58.690	55.000	17.50	0.00	42.20	4.85
281	282	0.465824	GCATCAAGGCTCAGATGGCT	60.466	55.000	23.20	0.00	45.04	4.75
282	283	0.750546	TGCATCAAGGCTCAGATGGC	60.751	55.000	23.20	17.61	41.43	4.40
283	284	1.758936	TTGCATCAAGGCTCAGATGG	58.241	50.000	23.20	11.09	41.43	3.51
284	285	2.543861	GCATTGCATCAAGGCTCAGATG	60.544	50.000	19.77	19.77	45.78	2.90
285	286	1.681793	GCATTGCATCAAGGCTCAGAT	59.318	47.619	3.15	0.00	45.78	2.90
286	287	1.100510	GCATTGCATCAAGGCTCAGA	58.899	50.000	3.15	0.00	45.78	3.27
287	288	3.642901	GCATTGCATCAAGGCTCAG	57.357	52.632	3.15	0.00	45.78	3.35
292	293	0.248012	TTGCCTGCATTGCATCAAGG	59.752	50.000	12.53	10.86	38.13	3.61
293	294	1.355971	GTTGCCTGCATTGCATCAAG	58.644	50.000	20.01	7.45	38.13	3.02
294	295	0.037139	GGTTGCCTGCATTGCATCAA	60.037	50.000	12.53	15.50	38.13	2.57
295	296	1.186267	TGGTTGCCTGCATTGCATCA	61.186	50.000	12.53	10.40	38.13	3.07
296	297	0.037139	TTGGTTGCCTGCATTGCATC	60.037	50.000	12.53	7.85	38.13	3.91
297	298	0.616371	ATTGGTTGCCTGCATTGCAT	59.384	45.000	12.53	0.00	38.13	3.96
298	299	0.037139	GATTGGTTGCCTGCATTGCA	60.037	50.000	11.50	11.50	36.84	4.08
299	300	0.037139	TGATTGGTTGCCTGCATTGC	60.037	50.000	0.46	0.46	0.00	3.56
300	301	2.070783	GTTGATTGGTTGCCTGCATTG	58.929	47.619	0.00	0.00	0.00	2.82
301	302	1.693062	TGTTGATTGGTTGCCTGCATT	59.307	42.857	0.00	0.00	0.00	3.56
302	303	1.340088	TGTTGATTGGTTGCCTGCAT	58.660	45.000	0.00	0.00	0.00	3.96
303	304	1.001068	CATGTTGATTGGTTGCCTGCA	59.999	47.619	0.00	0.00	0.00	4.41
304	305	1.717194	CATGTTGATTGGTTGCCTGC	58.283	50.000	0.00	0.00	0.00	4.85
305	306	1.001068	TGCATGTTGATTGGTTGCCTG	59.999	47.619	0.00	0.00	32.39	4.85
306	307	1.274167	CTGCATGTTGATTGGTTGCCT	59.726	47.619	0.00	0.00	32.39	4.75
307	308	1.273048	TCTGCATGTTGATTGGTTGCC	59.727	47.619	0.00	0.00	32.39	4.52
308	309	2.728690	TCTGCATGTTGATTGGTTGC	57.271	45.000	0.00	0.00	0.00	4.17
730	731	2.367486	GGTCTACCGACTGCTAACTCT	58.633	52.381	0.00	0.00	40.10	3.24
756	757	3.767711	TGTCAGTGAGAGAGTGGTATGT	58.232	45.455	0.00	0.00	0.00	2.29
936	937	4.394712	GACCACCCGGCAGTGAGG	62.395	72.222	11.95	1.62	40.34	3.86
985	986	0.320421	AACATTAGTCGTGTGCCGCT	60.320	50.000	0.00	0.00	36.19	5.52
1062	1069	4.767255	CCAGCCGAGGAGGTGTGC	62.767	72.222	0.00	0.00	43.70	4.57
1511	1521	1.302993	TAGGCCAAAACCCTCGTGC	60.303	57.895	5.01	0.00	33.88	5.34
1586	1600	3.582208	CCTCAAATCCCCAAATCCACAAA	59.418	43.478	0.00	0.00	0.00	2.83
1587	1601	3.172339	CCTCAAATCCCCAAATCCACAA	58.828	45.455	0.00	0.00	0.00	3.33
1588	1602	2.818921	CCTCAAATCCCCAAATCCACA	58.181	47.619	0.00	0.00	0.00	4.17
1589	1603	1.482182	GCCTCAAATCCCCAAATCCAC	59.518	52.381	0.00	0.00	0.00	4.02
1590	1604	1.864669	GCCTCAAATCCCCAAATCCA	58.135	50.000	0.00	0.00	0.00	3.41
1591	1605	0.746659	CGCCTCAAATCCCCAAATCC	59.253	55.000	0.00	0.00	0.00	3.01
1592	1606	1.134946	CACGCCTCAAATCCCCAAATC	59.865	52.381	0.00	0.00	0.00	2.17
1648	1664	0.533951	CGCGAACCCTACTACCCTTT	59.466	55.000	0.00	0.00	0.00	3.11
1700	1716	5.245977	AGAAAACCCCAATTCTACCACAATG	59.754	40.000	0.00	0.00	34.24	2.82
1791	1807	5.967088	TCTAATCTCTAAAGGCACACAGAC	58.033	41.667	0.00	0.00	0.00	3.51
1810	1826	6.601332	AGGAACACCAGACATTTCTTTCTAA	58.399	36.000	0.00	0.00	0.00	2.10
1863	1879	7.362662	CAAACAACATATACAAGCACAGACTT	58.637	34.615	0.00	0.00	0.00	3.01
2176	2192	6.574350	ACGAATTTAAGAGACACCTATCAGG	58.426	40.000	0.00	0.00	42.49	3.86
2177	2193	9.751542	ATAACGAATTTAAGAGACACCTATCAG	57.248	33.333	0.00	0.00	0.00	2.90
2178	2194	9.529325	CATAACGAATTTAAGAGACACCTATCA	57.471	33.333	0.00	0.00	0.00	2.15
2179	2195	8.488764	GCATAACGAATTTAAGAGACACCTATC	58.511	37.037	0.00	0.00	0.00	2.08
2180	2196	7.985184	TGCATAACGAATTTAAGAGACACCTAT	59.015	33.333	0.00	0.00	0.00	2.57
2181	2197	7.324935	TGCATAACGAATTTAAGAGACACCTA	58.675	34.615	0.00	0.00	0.00	3.08
2182	2198	6.170506	TGCATAACGAATTTAAGAGACACCT	58.829	36.000	0.00	0.00	0.00	4.00
2183	2199	6.417191	TGCATAACGAATTTAAGAGACACC	57.583	37.500	0.00	0.00	0.00	4.16
2227	2246	2.633967	TCGGAACACCTACCAGCTTTAA	59.366	45.455	0.00	0.00	0.00	1.52
2387	2408	2.302157	GGTACTCGAATATCCCAAGGGG	59.698	54.545	5.08	0.00	46.11	4.79
2612	2633	7.695055	TCCAACCTCCTTGAAATAATCTTACA	58.305	34.615	0.00	0.00	30.42	2.41
2818	2839	6.701145	ACTAAGAAATGTCGAGCAGATCTA	57.299	37.500	0.00	0.00	0.00	1.98
2874	2895	1.937223	CCGTGACACACAAACAGCTAA	59.063	47.619	6.37	0.00	33.40	3.09
2887	2908	7.876068	ACAACTATTTAATTTCTCTCCGTGACA	59.124	33.333	0.00	0.00	0.00	3.58
3066	3214	2.448926	TGTGGACTGACAACCGTATG	57.551	50.000	0.00	0.00	0.00	2.39
3122	3270	0.551396	GAGGGTTAGTGGAATGGGGG	59.449	60.000	0.00	0.00	0.00	5.40
3123	3271	1.596496	AGAGGGTTAGTGGAATGGGG	58.404	55.000	0.00	0.00	0.00	4.96
3124	3272	3.118000	GGTTAGAGGGTTAGTGGAATGGG	60.118	52.174	0.00	0.00	0.00	4.00
3125	3273	3.118000	GGGTTAGAGGGTTAGTGGAATGG	60.118	52.174	0.00	0.00	0.00	3.16
3126	3274	3.780850	AGGGTTAGAGGGTTAGTGGAATG	59.219	47.826	0.00	0.00	0.00	2.67
3127	3275	4.090027	AGGGTTAGAGGGTTAGTGGAAT	57.910	45.455	0.00	0.00	0.00	3.01
3128	3276	3.572661	AGGGTTAGAGGGTTAGTGGAA	57.427	47.619	0.00	0.00	0.00	3.53
3129	3277	3.599698	ACTAGGGTTAGAGGGTTAGTGGA	59.400	47.826	0.00	0.00	0.00	4.02
3130	3278	3.991683	ACTAGGGTTAGAGGGTTAGTGG	58.008	50.000	0.00	0.00	0.00	4.00
3131	3279	7.486407	TTAAACTAGGGTTAGAGGGTTAGTG	57.514	40.000	0.00	0.00	34.90	2.74
3132	3280	8.510358	TTTTAAACTAGGGTTAGAGGGTTAGT	57.490	34.615	0.00	0.00	34.90	2.24
3487	3880	1.071987	TGAGGAGCACAACAGCAGG	59.928	57.895	0.00	0.00	36.85	4.85
3523	3916	1.075226	AGCAGAAGAGGGGCGGATA	60.075	57.895	0.00	0.00	0.00	2.59
3657	4097	0.842635	ATCCCATGGCCAGAGTCTTC	59.157	55.000	13.05	0.00	0.00	2.87
3672	4112	5.246307	GGGCTGTGTCAACTATAATATCCC	58.754	45.833	0.00	0.00	0.00	3.85
3687	4127	1.352622	TGAAGAACCTGGGGCTGTGT	61.353	55.000	0.00	0.00	0.00	3.72
3765	4205	2.546789	CCAATAAGTAATTCCGGACGGC	59.453	50.000	1.83	0.00	34.68	5.68
3824	4264	5.957842	ACTTGTCGCAGAAATGGATAAAA	57.042	34.783	0.00	0.00	39.69	1.52
3831	4271	5.898159	CGAAATTACTTGTCGCAGAAATG	57.102	39.130	0.00	0.00	39.69	2.32
3858	4298	9.359195	AGGAATTCTCTCTAGTATATACTCCCT	57.641	37.037	18.68	8.07	37.73	4.20
3859	4299	9.984590	AAGGAATTCTCTCTAGTATATACTCCC	57.015	37.037	18.68	6.28	37.73	4.30
3867	4307	8.379331	GGCCAAATAAGGAATTCTCTCTAGTAT	58.621	37.037	5.23	0.00	0.00	2.12
3868	4308	7.202102	GGGCCAAATAAGGAATTCTCTCTAGTA	60.202	40.741	4.39	0.00	0.00	1.82
3869	4309	6.409810	GGGCCAAATAAGGAATTCTCTCTAGT	60.410	42.308	4.39	0.00	0.00	2.57
3870	4310	6.000840	GGGCCAAATAAGGAATTCTCTCTAG	58.999	44.000	4.39	0.00	0.00	2.43
4016	4456	2.399396	AATGGACTTTTCACGTTGCG	57.601	45.000	0.00	0.00	0.00	4.85
4243	5971	8.807118	ACAACTATTCTTCTCTTCTCACATGTA	58.193	33.333	0.00	0.00	0.00	2.29
4246	5974	7.038729	TCCACAACTATTCTTCTCTTCTCACAT	60.039	37.037	0.00	0.00	0.00	3.21
4585	8173	3.146066	ACAGAAAAATCTAGTTGCGGCA	58.854	40.909	0.00	0.00	0.00	5.69
4825	8419	4.364415	ACAGCTTGCAAAAACGTCTTAA	57.636	36.364	0.00	0.00	0.00	1.85
4845	8439	8.669394	AATATAAGACGTTTTTGCAAGCTAAC	57.331	30.769	0.00	5.28	0.00	2.34
4847	8441	9.929722	CATAATATAAGACGTTTTTGCAAGCTA	57.070	29.630	0.00	0.00	0.00	3.32
4852	8446	7.466185	CGTCCCATAATATAAGACGTTTTTGCA	60.466	37.037	13.04	0.00	43.89	4.08
4895	8568	6.494146	AGACTTATATTTAGGAACGGAGGGAG	59.506	42.308	0.00	0.00	0.00	4.30
4896	8569	6.379579	AGACTTATATTTAGGAACGGAGGGA	58.620	40.000	0.00	0.00	0.00	4.20
4897	8570	6.667558	AGACTTATATTTAGGAACGGAGGG	57.332	41.667	0.00	0.00	0.00	4.30
4898	8571	8.959705	AAAAGACTTATATTTAGGAACGGAGG	57.040	34.615	0.00	0.00	0.00	4.30
4915	8588	9.413734	CCCATATTGGAATCTCTAAAAAGACTT	57.586	33.333	0.00	0.00	40.96	3.01
4916	8589	7.503902	GCCCATATTGGAATCTCTAAAAAGACT	59.496	37.037	0.00	0.00	40.96	3.24
4917	8590	7.503902	AGCCCATATTGGAATCTCTAAAAAGAC	59.496	37.037	0.00	0.00	40.96	3.01
4918	8591	7.586349	AGCCCATATTGGAATCTCTAAAAAGA	58.414	34.615	0.00	0.00	40.96	2.52
4919	8592	7.830099	AGCCCATATTGGAATCTCTAAAAAG	57.170	36.000	0.00	0.00	40.96	2.27
4920	8593	8.278639	TGTAGCCCATATTGGAATCTCTAAAAA	58.721	33.333	0.00	0.00	40.96	1.94
4921	8594	7.811282	TGTAGCCCATATTGGAATCTCTAAAA	58.189	34.615	0.00	0.00	40.96	1.52
4922	8595	7.387265	TGTAGCCCATATTGGAATCTCTAAA	57.613	36.000	0.00	0.00	40.96	1.85
4923	8596	7.574021	ATGTAGCCCATATTGGAATCTCTAA	57.426	36.000	0.00	0.00	40.96	2.10
4924	8597	7.901322	AGTATGTAGCCCATATTGGAATCTCTA	59.099	37.037	0.00	0.00	40.96	2.43
4925	8598	6.732862	AGTATGTAGCCCATATTGGAATCTCT	59.267	38.462	0.00	0.00	40.96	3.10
4926	8599	6.820656	CAGTATGTAGCCCATATTGGAATCTC	59.179	42.308	0.00	0.00	40.96	2.75
4927	8600	6.501805	TCAGTATGTAGCCCATATTGGAATCT	59.498	38.462	13.23	0.00	41.60	2.40
4928	8601	6.711277	TCAGTATGTAGCCCATATTGGAATC	58.289	40.000	13.23	0.00	41.60	2.52
4929	8602	6.702449	TCAGTATGTAGCCCATATTGGAAT	57.298	37.500	13.23	0.00	41.60	3.01
4930	8603	6.044287	ACATCAGTATGTAGCCCATATTGGAA	59.956	38.462	13.23	0.98	44.66	3.53
4931	8604	5.547666	ACATCAGTATGTAGCCCATATTGGA	59.452	40.000	13.23	5.99	44.66	3.53
4932	8605	5.809001	ACATCAGTATGTAGCCCATATTGG	58.191	41.667	13.23	0.00	44.66	3.16
4960	8633	8.189460	GGTGAATCTACACTCTAAAATACGTCT	58.811	37.037	0.00	0.00	40.22	4.18
4961	8634	7.434602	GGGTGAATCTACACTCTAAAATACGTC	59.565	40.741	0.00	0.00	38.14	4.34
4962	8635	7.093640	TGGGTGAATCTACACTCTAAAATACGT	60.094	37.037	0.00	0.00	41.33	3.57
4963	8636	7.262772	TGGGTGAATCTACACTCTAAAATACG	58.737	38.462	0.00	0.00	41.33	3.06
4964	8637	9.614792	AATGGGTGAATCTACACTCTAAAATAC	57.385	33.333	0.00	0.00	41.33	1.89
4966	8639	9.533831	AAAATGGGTGAATCTACACTCTAAAAT	57.466	29.630	0.00	0.00	41.33	1.82
4967	8640	8.792633	CAAAATGGGTGAATCTACACTCTAAAA	58.207	33.333	0.00	0.00	41.33	1.52
4968	8641	7.094377	GCAAAATGGGTGAATCTACACTCTAAA	60.094	37.037	0.00	0.00	41.33	1.85
4969	8642	6.374333	GCAAAATGGGTGAATCTACACTCTAA	59.626	38.462	0.00	0.00	41.33	2.10
4970	8643	5.880332	GCAAAATGGGTGAATCTACACTCTA	59.120	40.000	0.00	0.00	41.33	2.43
4971	8644	4.702131	GCAAAATGGGTGAATCTACACTCT	59.298	41.667	0.00	0.00	41.33	3.24
4972	8645	4.702131	AGCAAAATGGGTGAATCTACACTC	59.298	41.667	0.00	0.00	41.16	3.51
4973	8646	4.666512	AGCAAAATGGGTGAATCTACACT	58.333	39.130	0.00	0.00	40.22	3.55
4974	8647	4.702131	AGAGCAAAATGGGTGAATCTACAC	59.298	41.667	0.00	0.00	39.70	2.90
4975	8648	4.701651	CAGAGCAAAATGGGTGAATCTACA	59.298	41.667	0.00	0.00	0.00	2.74
4976	8649	4.702131	ACAGAGCAAAATGGGTGAATCTAC	59.298	41.667	0.00	0.00	0.00	2.59
4977	8650	4.922206	ACAGAGCAAAATGGGTGAATCTA	58.078	39.130	0.00	0.00	0.00	1.98
4978	8651	3.771216	ACAGAGCAAAATGGGTGAATCT	58.229	40.909	0.00	0.00	0.00	2.40
4979	8652	5.126061	ACATACAGAGCAAAATGGGTGAATC	59.874	40.000	0.00	0.00	0.00	2.52
4980	8653	5.018809	ACATACAGAGCAAAATGGGTGAAT	58.981	37.500	0.00	0.00	0.00	2.57
4981	8654	4.406456	ACATACAGAGCAAAATGGGTGAA	58.594	39.130	0.00	0.00	0.00	3.18
4982	8655	4.032960	ACATACAGAGCAAAATGGGTGA	57.967	40.909	0.00	0.00	0.00	4.02
4983	8656	4.943705	ACTACATACAGAGCAAAATGGGTG	59.056	41.667	0.00	0.00	0.00	4.61
4984	8657	5.179452	ACTACATACAGAGCAAAATGGGT	57.821	39.130	0.00	0.00	0.00	4.51
4985	8658	4.576463	GGACTACATACAGAGCAAAATGGG	59.424	45.833	0.00	0.00	0.00	4.00
4986	8659	5.185454	TGGACTACATACAGAGCAAAATGG	58.815	41.667	0.00	0.00	0.00	3.16
4987	8660	6.932356	ATGGACTACATACAGAGCAAAATG	57.068	37.500	0.00	0.00	38.26	2.32
4988	8661	9.060347	CAATATGGACTACATACAGAGCAAAAT	57.940	33.333	0.00	0.00	44.41	1.82
4989	8662	7.498900	CCAATATGGACTACATACAGAGCAAAA	59.501	37.037	0.00	0.00	44.41	2.44
4990	8663	6.992123	CCAATATGGACTACATACAGAGCAAA	59.008	38.462	0.00	0.00	44.41	3.68
4991	8664	6.326323	TCCAATATGGACTACATACAGAGCAA	59.674	38.462	0.00	0.00	42.67	3.91
4992	8665	5.838521	TCCAATATGGACTACATACAGAGCA	59.161	40.000	0.00	0.00	42.67	4.26
4993	8666	6.346477	TCCAATATGGACTACATACAGAGC	57.654	41.667	0.00	0.00	42.67	4.09
5023	8696	9.392259	CCTCCGTTCCTAAATATAAGTCTTTTT	57.608	33.333	0.00	0.00	0.00	1.94
5024	8697	7.991460	CCCTCCGTTCCTAAATATAAGTCTTTT	59.009	37.037	0.00	0.00	0.00	2.27
5025	8698	7.346436	TCCCTCCGTTCCTAAATATAAGTCTTT	59.654	37.037	0.00	0.00	0.00	2.52
5026	8699	6.842807	TCCCTCCGTTCCTAAATATAAGTCTT	59.157	38.462	0.00	0.00	0.00	3.01
5027	8700	6.379579	TCCCTCCGTTCCTAAATATAAGTCT	58.620	40.000	0.00	0.00	0.00	3.24
5028	8701	6.661304	TCCCTCCGTTCCTAAATATAAGTC	57.339	41.667	0.00	0.00	0.00	3.01
5029	8702	5.011840	GCTCCCTCCGTTCCTAAATATAAGT	59.988	44.000	0.00	0.00	0.00	2.24
5030	8703	5.011738	TGCTCCCTCCGTTCCTAAATATAAG	59.988	44.000	0.00	0.00	0.00	1.73
5031	8704	4.903049	TGCTCCCTCCGTTCCTAAATATAA	59.097	41.667	0.00	0.00	0.00	0.98
5032	8705	4.485875	TGCTCCCTCCGTTCCTAAATATA	58.514	43.478	0.00	0.00	0.00	0.86
5033	8706	3.314693	TGCTCCCTCCGTTCCTAAATAT	58.685	45.455	0.00	0.00	0.00	1.28
5034	8707	2.754465	TGCTCCCTCCGTTCCTAAATA	58.246	47.619	0.00	0.00	0.00	1.40
5035	8708	1.580059	TGCTCCCTCCGTTCCTAAAT	58.420	50.000	0.00	0.00	0.00	1.40
5036	8709	1.209504	CATGCTCCCTCCGTTCCTAAA	59.790	52.381	0.00	0.00	0.00	1.85
5037	8710	0.830648	CATGCTCCCTCCGTTCCTAA	59.169	55.000	0.00	0.00	0.00	2.69
5038	8711	0.325296	ACATGCTCCCTCCGTTCCTA	60.325	55.000	0.00	0.00	0.00	2.94
5039	8712	0.325296	TACATGCTCCCTCCGTTCCT	60.325	55.000	0.00	0.00	0.00	3.36
5040	8713	0.759346	ATACATGCTCCCTCCGTTCC	59.241	55.000	0.00	0.00	0.00	3.62
5041	8714	2.622064	AATACATGCTCCCTCCGTTC	57.378	50.000	0.00	0.00	0.00	3.95
5042	8715	3.039011	ACTAATACATGCTCCCTCCGTT	58.961	45.455	0.00	0.00	0.00	4.44
5043	8716	2.679082	ACTAATACATGCTCCCTCCGT	58.321	47.619	0.00	0.00	0.00	4.69
5044	8717	3.367498	GCTACTAATACATGCTCCCTCCG	60.367	52.174	0.00	0.00	0.00	4.63
5045	8718	3.835395	AGCTACTAATACATGCTCCCTCC	59.165	47.826	0.00	0.00	0.00	4.30
5046	8719	4.322349	CCAGCTACTAATACATGCTCCCTC	60.322	50.000	0.00	0.00	0.00	4.30
5047	8720	3.580458	CCAGCTACTAATACATGCTCCCT	59.420	47.826	0.00	0.00	0.00	4.20
5048	8721	3.307059	CCCAGCTACTAATACATGCTCCC	60.307	52.174	0.00	0.00	0.00	4.30
5049	8722	3.325135	ACCCAGCTACTAATACATGCTCC	59.675	47.826	0.00	0.00	0.00	4.70
5050	8723	4.310769	CACCCAGCTACTAATACATGCTC	58.689	47.826	0.00	0.00	0.00	4.26
5051	8724	3.495100	GCACCCAGCTACTAATACATGCT	60.495	47.826	0.00	0.00	41.15	3.79
5052	8725	2.808543	GCACCCAGCTACTAATACATGC	59.191	50.000	0.00	0.00	41.15	4.06
5072	8745	2.076863	CTGTAGCACCCAACTTACAGC	58.923	52.381	0.00	0.00	0.00	4.40
5083	8756	1.475280	TCGACATGGTACTGTAGCACC	59.525	52.381	20.63	12.23	39.21	5.01
5132	8942	4.532126	AGGTTGACACTCATAGACCAATCA	59.468	41.667	0.00	0.00	29.41	2.57
5235	9045	0.541998	TTCACCGAGGAGCCTTGAGA	60.542	55.000	5.30	0.78	0.00	3.27
5364	9174	0.804989	GCTGCCAGCATTAGACGTTT	59.195	50.000	12.82	0.00	41.89	3.60
5367	9177	1.083806	TTCGCTGCCAGCATTAGACG	61.084	55.000	18.21	0.00	42.58	4.18
5442	9255	9.026074	ACACAAAACTTTTCCACAATAAATACG	57.974	29.630	0.00	0.00	0.00	3.06
5718	9549	2.114616	ACACCAGGAGGCAGATCTAAG	58.885	52.381	0.00	0.00	39.06	2.18
5781	9612	1.899142	GACTTAAAATTGCCAGGGCCA	59.101	47.619	6.18	0.00	41.09	5.36
5862	9693	5.354767	TGATGATCAGAGAAATCCTCAACG	58.645	41.667	0.09	0.00	44.40	4.10
6160	10001	6.371809	TTCGAAGCAAAACTGAGTAATGTT	57.628	33.333	0.00	0.00	0.00	2.71
6223	10070	2.095161	ACGGTAGAGCTTTCTTCGACAG	60.095	50.000	0.00	0.00	0.00	3.51
6323	11595	1.193323	CCAGGAGAGTCAGCAGTGAT	58.807	55.000	0.00	0.00	34.36	3.06
6365	11637	9.012448	CATGTAAATAGTACAACAATGCACATG	57.988	33.333	0.00	0.00	34.40	3.21
6570	11842	6.160664	ACATACGAAGTTACCAAAATGTCG	57.839	37.500	0.00	0.00	37.78	4.35
6726	12024	1.202879	TCACAACCATGACCTTCCCAC	60.203	52.381	0.00	0.00	0.00	4.61
7134	12613	0.692756	TGTGAGACCACCCAAGGACA	60.693	55.000	0.00	0.00	42.53	4.02
7135	12614	0.472471	TTGTGAGACCACCCAAGGAC	59.528	55.000	0.00	0.00	42.53	3.85
7136	12615	1.217916	TTTGTGAGACCACCCAAGGA	58.782	50.000	0.00	0.00	42.53	3.36
7311	12791	2.097036	CATCACTGCCATGTCACCAAT	58.903	47.619	0.00	0.00	0.00	3.16
7466	12946	2.154854	TTCAACTCTGAACTCTGGCG	57.845	50.000	0.00	0.00	36.62	5.69
7550	13032	4.597004	AGAGTAATCCCGTGTCACTCTAA	58.403	43.478	0.65	0.00	43.09	2.10
7552	13034	3.088789	AGAGTAATCCCGTGTCACTCT	57.911	47.619	0.65	0.00	40.79	3.24
7926	13518	7.333423	GTGTGTGAGATATGTAACCTAAAAGCA	59.667	37.037	0.00	0.00	0.00	3.91
7943	13535	6.713762	AATTTGATTTTCTGGTGTGTGAGA	57.286	33.333	0.00	0.00	0.00	3.27
8520	14334	5.003804	CAGTTAGCATCTAAAACCACCACT	58.996	41.667	0.00	0.00	0.00	4.00
8581	14427	8.306761	AGCAAACGATATTCCAAATCTCTTTTT	58.693	29.630	0.00	0.00	0.00	1.94
8582	14428	7.830739	AGCAAACGATATTCCAAATCTCTTTT	58.169	30.769	0.00	0.00	0.00	2.27
8583	14429	7.396540	AGCAAACGATATTCCAAATCTCTTT	57.603	32.000	0.00	0.00	0.00	2.52
8584	14430	7.396540	AAGCAAACGATATTCCAAATCTCTT	57.603	32.000	0.00	0.00	0.00	2.85
8585	14431	8.562892	CATAAGCAAACGATATTCCAAATCTCT	58.437	33.333	0.00	0.00	0.00	3.10
8586	14432	8.559536	TCATAAGCAAACGATATTCCAAATCTC	58.440	33.333	0.00	0.00	0.00	2.75
8587	14433	8.450578	TCATAAGCAAACGATATTCCAAATCT	57.549	30.769	0.00	0.00	0.00	2.40
8588	14434	8.345565	ACTCATAAGCAAACGATATTCCAAATC	58.654	33.333	0.00	0.00	0.00	2.17
8589	14435	8.225603	ACTCATAAGCAAACGATATTCCAAAT	57.774	30.769	0.00	0.00	0.00	2.32
8619	14465	3.418047	ACAAGTATTTTTGGACGGAGGG	58.582	45.455	0.00	0.00	32.32	4.30
8620	14466	4.069304	TGACAAGTATTTTTGGACGGAGG	58.931	43.478	0.00	0.00	32.32	4.30
8622	14468	5.309638	TGATGACAAGTATTTTTGGACGGA	58.690	37.500	0.00	0.00	32.32	4.69
8623	14469	5.621197	TGATGACAAGTATTTTTGGACGG	57.379	39.130	0.00	0.00	32.32	4.79
8624	14470	7.922505	TTTTGATGACAAGTATTTTTGGACG	57.077	32.000	0.00	0.00	37.32	4.79
8626	14472	8.646004	TCCATTTTGATGACAAGTATTTTTGGA	58.354	29.630	0.00	0.00	37.32	3.53
8627	14473	8.830201	TCCATTTTGATGACAAGTATTTTTGG	57.170	30.769	0.00	0.00	37.32	3.28
8635	14481	9.918630	CTCTTTTTATCCATTTTGATGACAAGT	57.081	29.630	0.00	0.00	37.32	3.16
8691	14537	9.093458	GTCATCAAAATGGATAAAAGGGGATAT	57.907	33.333	0.00	0.00	33.42	1.63
8692	14538	8.064389	TGTCATCAAAATGGATAAAAGGGGATA	58.936	33.333	0.00	0.00	33.42	2.59
8693	14539	6.902416	TGTCATCAAAATGGATAAAAGGGGAT	59.098	34.615	0.00	0.00	33.42	3.85
8694	14540	6.259893	TGTCATCAAAATGGATAAAAGGGGA	58.740	36.000	0.00	0.00	33.42	4.81
8695	14541	6.543430	TGTCATCAAAATGGATAAAAGGGG	57.457	37.500	0.00	0.00	33.42	4.79
8696	14542	7.614494	ACTTGTCATCAAAATGGATAAAAGGG	58.386	34.615	0.00	0.00	33.42	3.95
8703	14549	7.975616	CCGAAAATACTTGTCATCAAAATGGAT	59.024	33.333	0.00	0.00	33.42	3.41
8704	14550	7.175816	TCCGAAAATACTTGTCATCAAAATGGA	59.824	33.333	0.00	0.00	33.42	3.41
8705	14551	7.273381	GTCCGAAAATACTTGTCATCAAAATGG	59.727	37.037	0.00	0.00	33.42	3.16
8706	14552	7.007367	CGTCCGAAAATACTTGTCATCAAAATG	59.993	37.037	0.00	0.00	32.87	2.32
8707	14553	7.021196	CGTCCGAAAATACTTGTCATCAAAAT	58.979	34.615	0.00	0.00	32.87	1.82
8708	14554	6.203145	TCGTCCGAAAATACTTGTCATCAAAA	59.797	34.615	0.00	0.00	32.87	2.44
8709	14555	5.697178	TCGTCCGAAAATACTTGTCATCAAA	59.303	36.000	0.00	0.00	32.87	2.69
8710	14556	5.231702	TCGTCCGAAAATACTTGTCATCAA	58.768	37.500	0.00	0.00	0.00	2.57
8711	14557	4.811908	TCGTCCGAAAATACTTGTCATCA	58.188	39.130	0.00	0.00	0.00	3.07
8712	14558	5.220416	CCTTCGTCCGAAAATACTTGTCATC	60.220	44.000	3.52	0.00	33.34	2.92
8713	14559	4.630069	CCTTCGTCCGAAAATACTTGTCAT	59.370	41.667	3.52	0.00	33.34	3.06
8714	14560	3.991773	CCTTCGTCCGAAAATACTTGTCA	59.008	43.478	3.52	0.00	33.34	3.58
8715	14561	3.370061	CCCTTCGTCCGAAAATACTTGTC	59.630	47.826	3.52	0.00	33.34	3.18
8716	14562	3.007182	TCCCTTCGTCCGAAAATACTTGT	59.993	43.478	3.52	0.00	33.34	3.16
8717	14563	3.592059	TCCCTTCGTCCGAAAATACTTG	58.408	45.455	3.52	0.00	33.34	3.16
8718	14564	3.260128	ACTCCCTTCGTCCGAAAATACTT	59.740	43.478	3.52	0.00	33.34	2.24
8719	14565	2.830321	ACTCCCTTCGTCCGAAAATACT	59.170	45.455	3.52	0.00	33.34	2.12
8720	14566	3.242549	ACTCCCTTCGTCCGAAAATAC	57.757	47.619	3.52	0.00	33.34	1.89
8721	14567	4.019174	AGTACTCCCTTCGTCCGAAAATA	58.981	43.478	3.52	0.00	33.34	1.40
8722	14568	2.830321	AGTACTCCCTTCGTCCGAAAAT	59.170	45.455	3.52	0.00	33.34	1.82
8723	14569	2.242043	AGTACTCCCTTCGTCCGAAAA	58.758	47.619	3.52	0.00	33.34	2.29
8724	14570	1.915141	AGTACTCCCTTCGTCCGAAA	58.085	50.000	3.52	0.00	33.34	3.46
8725	14571	2.026822	ACTAGTACTCCCTTCGTCCGAA	60.027	50.000	0.00	1.81	0.00	4.30
8726	14572	1.556911	ACTAGTACTCCCTTCGTCCGA	59.443	52.381	0.00	0.00	0.00	4.55
8727	14573	2.035530	ACTAGTACTCCCTTCGTCCG	57.964	55.000	0.00	0.00	0.00	4.79
8728	14574	3.625313	GTGTACTAGTACTCCCTTCGTCC	59.375	52.174	28.56	3.63	37.00	4.79
8729	14575	3.308323	CGTGTACTAGTACTCCCTTCGTC	59.692	52.174	28.56	4.10	37.00	4.20
8730	14576	3.055819	TCGTGTACTAGTACTCCCTTCGT	60.056	47.826	28.56	0.00	37.00	3.85
8731	14577	3.525537	TCGTGTACTAGTACTCCCTTCG	58.474	50.000	28.56	21.42	37.00	3.79
8732	14578	3.876320	CCTCGTGTACTAGTACTCCCTTC	59.124	52.174	28.56	13.58	37.00	3.46
8733	14579	3.883669	CCTCGTGTACTAGTACTCCCTT	58.116	50.000	28.56	0.00	37.00	3.95
8734	14580	2.421248	GCCTCGTGTACTAGTACTCCCT	60.421	54.545	28.56	0.00	37.00	4.20
8735	14581	1.946081	GCCTCGTGTACTAGTACTCCC	59.054	57.143	28.56	17.29	37.00	4.30
8736	14582	2.916640	AGCCTCGTGTACTAGTACTCC	58.083	52.381	28.56	19.34	37.00	3.85
8737	14583	4.437239	TGTAGCCTCGTGTACTAGTACTC	58.563	47.826	28.56	24.34	37.00	2.59
8738	14584	4.478206	TGTAGCCTCGTGTACTAGTACT	57.522	45.455	28.56	12.82	37.00	2.73
8739	14585	4.574013	ACATGTAGCCTCGTGTACTAGTAC	59.426	45.833	23.58	23.58	36.04	2.73
8740	14586	4.573607	CACATGTAGCCTCGTGTACTAGTA	59.426	45.833	0.00	0.00	36.04	1.82
8741	14587	3.377485	CACATGTAGCCTCGTGTACTAGT	59.623	47.826	0.00	0.00	36.04	2.57
8742	14588	3.792459	GCACATGTAGCCTCGTGTACTAG	60.792	52.174	0.00	0.00	36.04	2.57
8743	14589	2.098607	GCACATGTAGCCTCGTGTACTA	59.901	50.000	0.00	0.00	36.04	1.82
8749	14595	2.979814	TAATGCACATGTAGCCTCGT	57.020	45.000	14.85	3.82	0.00	4.18
8750	14596	3.133691	ACATAATGCACATGTAGCCTCG	58.866	45.455	12.83	0.00	34.88	4.63
8877	14723	4.588899	TGCCAACTGCTATTGACTAACAT	58.411	39.130	2.48	0.00	42.00	2.71
8900	14746	2.162681	AGCACTAATCAACTTGCCACC	58.837	47.619	0.00	0.00	35.47	4.61
9012	14890	9.521841	TGATCCTACGAGTAGAGATTAATCATT	57.478	33.333	17.56	7.47	35.21	2.57
9013	14891	9.693739	ATGATCCTACGAGTAGAGATTAATCAT	57.306	33.333	17.56	8.14	35.21	2.45
9017	14895	8.919777	TCAATGATCCTACGAGTAGAGATTAA	57.080	34.615	11.52	6.31	35.21	1.40
9018	14896	7.119992	GCTCAATGATCCTACGAGTAGAGATTA	59.880	40.741	11.52	9.29	35.21	1.75
9027	14905	3.126831	GGTTGCTCAATGATCCTACGAG	58.873	50.000	0.00	0.00	0.00	4.18
9030	14908	3.179443	TCGGTTGCTCAATGATCCTAC	57.821	47.619	0.00	0.00	0.00	3.18
9035	14913	4.269183	TGGTTTATCGGTTGCTCAATGAT	58.731	39.130	0.00	5.89	0.00	2.45
9039	14917	6.576662	TTAATTGGTTTATCGGTTGCTCAA	57.423	33.333	0.00	0.00	0.00	3.02
9044	14922	8.620416	TCAGATGATTAATTGGTTTATCGGTTG	58.380	33.333	0.00	0.00	0.00	3.77
9046	14924	8.924511	ATCAGATGATTAATTGGTTTATCGGT	57.075	30.769	0.00	0.00	0.00	4.69
9106	14984	8.269317	ACAATTAATTGGTTTATCGGGAGTAGA	58.731	33.333	27.43	0.00	41.96	2.59
9147	15025	8.409358	AAGATTAATAGGCTAATCGGCAAATT	57.591	30.769	0.00	0.00	41.33	1.82
9148	15026	7.885399	AGAAGATTAATAGGCTAATCGGCAAAT	59.115	33.333	0.00	0.00	41.33	2.32
9171	15056	3.010138	ACCCAGTTGGCTAGCAAATAGAA	59.990	43.478	18.24	0.00	37.83	2.10
9176	15061	2.307392	TCATACCCAGTTGGCTAGCAAA	59.693	45.455	18.24	9.18	37.83	3.68
9178	15063	1.486310	CTCATACCCAGTTGGCTAGCA	59.514	52.381	18.24	0.00	37.83	3.49
9189	15074	9.555727	GTTAAATTAGTCATTAGCTCATACCCA	57.444	33.333	0.00	0.00	0.00	4.51
9221	15106	8.697507	AGGAGATTAATAGGTTAATTGGCAAG	57.302	34.615	5.96	0.00	39.88	4.01
9232	15117	6.462628	GGACAGCGTTTAGGAGATTAATAGGT	60.463	42.308	0.00	0.00	0.00	3.08
9243	15128	0.320073	CGGTTGGACAGCGTTTAGGA	60.320	55.000	0.00	0.00	41.69	2.94
9261	15147	9.265901	AGGAAATCATTAACTGATGACTAATCG	57.734	33.333	2.45	0.00	44.03	3.34
9271	15157	8.634335	TCATTGTTGAGGAAATCATTAACTGA	57.366	30.769	4.72	0.00	37.89	3.41
9326	15213	9.569122	AAAAAGGACAAGTAATAGCTTGAACTA	57.431	29.630	12.05	0.00	46.34	2.24

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.