Multiple sequence alignment - TraesCS1D01G124500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G124500 chr1D 100.000 4838 0 0 767 5604 128672141 128676978 0.000000e+00 8935.0
1 TraesCS1D01G124500 chr1D 100.000 513 0 0 1 513 128671375 128671887 0.000000e+00 948.0
2 TraesCS1D01G124500 chr1D 86.869 99 11 2 2220 2317 313208276 313208373 5.940000e-20 110.0
3 TraesCS1D01G124500 chr1D 98.148 54 1 0 3410 3463 128674733 128674786 1.660000e-15 95.3
4 TraesCS1D01G124500 chr1D 98.148 54 1 0 3359 3412 128674784 128674837 1.660000e-15 95.3
5 TraesCS1D01G124500 chr1D 75.301 166 29 7 40 197 429507899 429508060 1.010000e-07 69.4
6 TraesCS1D01G124500 chr1A 95.543 3388 108 18 2158 5529 188226121 188222761 0.000000e+00 5380.0
7 TraesCS1D01G124500 chr1A 96.115 1390 31 7 770 2157 188227644 188226276 0.000000e+00 2246.0
8 TraesCS1D01G124500 chr1A 87.629 97 12 0 2220 2316 481924421 481924517 4.590000e-21 113.0
9 TraesCS1D01G124500 chr1A 96.296 54 2 0 3410 3463 188224920 188224867 7.730000e-14 89.8
10 TraesCS1D01G124500 chr1B 97.107 2143 51 7 767 2900 229305072 229302932 0.000000e+00 3603.0
11 TraesCS1D01G124500 chr1B 96.194 1629 49 4 2953 4574 229302935 229301313 0.000000e+00 2652.0
12 TraesCS1D01G124500 chr1B 94.413 698 28 7 4681 5370 229301066 229300372 0.000000e+00 1062.0
13 TraesCS1D01G124500 chr1B 95.238 168 6 2 5363 5529 229298251 229298085 1.200000e-66 265.0
14 TraesCS1D01G124500 chr1B 87.248 149 5 6 367 513 229305552 229305416 2.090000e-34 158.0
15 TraesCS1D01G124500 chr1B 98.148 54 1 0 3359 3412 229302478 229302425 1.660000e-15 95.3
16 TraesCS1D01G124500 chr1B 98.148 54 1 0 3410 3463 229302529 229302476 1.660000e-15 95.3
17 TraesCS1D01G124500 chr2B 85.106 564 65 10 1183 1743 315660249 315660796 4.900000e-155 558.0
18 TraesCS1D01G124500 chr5D 87.248 298 32 6 1183 1477 463267218 463266924 9.000000e-88 335.0
19 TraesCS1D01G124500 chr5D 74.372 199 38 8 40 229 301626995 301627189 7.790000e-09 73.1
20 TraesCS1D01G124500 chr6B 89.796 98 10 0 2219 2316 129450874 129450971 5.890000e-25 126.0
21 TraesCS1D01G124500 chr6B 92.000 50 4 0 294 343 102095031 102094982 2.800000e-08 71.3
22 TraesCS1D01G124500 chr2D 87.255 102 13 0 2220 2321 128455502 128455603 3.550000e-22 117.0
23 TraesCS1D01G124500 chr2D 100.000 36 0 0 316 351 70508423 70508388 3.620000e-07 67.6
24 TraesCS1D01G124500 chr6A 87.755 98 12 0 2219 2316 72524424 72524521 1.280000e-21 115.0
25 TraesCS1D01G124500 chr6A 74.490 196 36 9 16 202 615390500 615390690 7.790000e-09 73.1
26 TraesCS1D01G124500 chr2A 86.538 104 10 3 2220 2321 135474926 135475027 1.650000e-20 111.0
27 TraesCS1D01G124500 chr2A 86.275 102 14 0 2220 2321 657520831 657520730 1.650000e-20 111.0
28 TraesCS1D01G124500 chr4D 76.020 196 33 9 16 202 473818438 473818628 7.730000e-14 89.8
29 TraesCS1D01G124500 chrUn 75.281 178 30 9 43 210 376394101 376393928 7.790000e-09 73.1
30 TraesCS1D01G124500 chr5A 75.595 168 29 7 43 202 4036512 4036349 7.790000e-09 73.1
31 TraesCS1D01G124500 chr7D 81.707 82 13 2 5029 5108 379829881 379829962 3.620000e-07 67.6
32 TraesCS1D01G124500 chr3A 75.000 168 30 7 43 202 57265684 57265521 3.620000e-07 67.6
33 TraesCS1D01G124500 chr4A 90.196 51 3 2 294 343 589485859 589485908 1.300000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G124500 chr1D 128671375 128676978 5603 False 2518.400000 8935 99.074000 1 5604 4 chr1D.!!$F3 5603
1 TraesCS1D01G124500 chr1A 188222761 188227644 4883 True 2571.933333 5380 95.984667 770 5529 3 chr1A.!!$R1 4759
2 TraesCS1D01G124500 chr1B 229298085 229305552 7467 True 1132.942857 3603 95.213714 367 5529 7 chr1B.!!$R1 5162
3 TraesCS1D01G124500 chr2B 315660249 315660796 547 False 558.000000 558 85.106000 1183 1743 1 chr2B.!!$F1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.032403 AAGCTGCTGCGATTTTTGCA 59.968 45.000 1.35 0.0 45.42 4.08 F
440 441 0.172803 AGCGAGGAAATAGCGAACGT 59.827 50.000 0.00 0.0 34.23 3.99 F
904 1000 0.536724 TCTGGTCATCGGTCATGTGG 59.463 55.000 0.00 0.0 33.66 4.17 F
929 1025 1.857364 CCTTGTCGTAACGTGGTGC 59.143 57.895 0.00 0.0 0.00 5.01 F
2595 2856 2.027100 GGGAGGAACAGTAACAAGGGAG 60.027 54.545 0.00 0.0 0.00 4.30 F
3509 3778 3.170717 TGTCCTTCTATGACCGAGGTTT 58.829 45.455 0.00 0.0 31.60 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 1755 1.726791 CTTGACACGCGATTAGTGCTT 59.273 47.619 15.93 0.0 42.94 3.91 R
1914 2019 4.202111 GGACATGAAAATATGGGGAAACGG 60.202 45.833 0.00 0.0 32.32 4.44 R
2595 2856 0.958876 CACCTTTTACCGGACCTGGC 60.959 60.000 9.46 0.0 0.00 4.85 R
2661 2922 4.406003 GTGGGACCTCTTTCTATAAGCTCA 59.594 45.833 0.00 0.0 0.00 4.26 R
3599 3868 1.156736 GCTTGAACGTGGCACTACAT 58.843 50.000 16.72 0.0 0.00 2.29 R
5334 5756 0.110238 CAATCTCCCACGTGCAAACG 60.110 55.000 10.91 0.0 39.31 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.719997 GGATTCTCGCGAGTGGAG 57.280 61.111 33.33 11.12 0.00 3.86
18 19 1.066587 GGATTCTCGCGAGTGGAGG 59.933 63.158 33.33 10.33 32.34 4.30
19 20 1.590259 GATTCTCGCGAGTGGAGGC 60.590 63.158 33.33 15.32 32.34 4.70
25 26 4.500116 GCGAGTGGAGGCGGAGTC 62.500 72.222 0.00 0.00 0.00 3.36
33 34 4.019983 AGGCGGAGTCTGATTCGT 57.980 55.556 2.16 0.00 46.61 3.85
34 35 2.277858 AGGCGGAGTCTGATTCGTT 58.722 52.632 2.16 0.00 46.61 3.85
35 36 0.108615 AGGCGGAGTCTGATTCGTTG 60.109 55.000 2.16 0.00 46.61 4.10
36 37 0.108804 GGCGGAGTCTGATTCGTTGA 60.109 55.000 2.16 0.00 0.00 3.18
37 38 1.471676 GGCGGAGTCTGATTCGTTGAT 60.472 52.381 2.16 0.00 0.00 2.57
38 39 1.855360 GCGGAGTCTGATTCGTTGATC 59.145 52.381 2.16 0.00 0.00 2.92
39 40 2.112522 CGGAGTCTGATTCGTTGATCG 58.887 52.381 0.00 0.00 41.41 3.69
40 41 2.478031 CGGAGTCTGATTCGTTGATCGT 60.478 50.000 0.00 0.00 40.80 3.73
41 42 2.854777 GGAGTCTGATTCGTTGATCGTG 59.145 50.000 0.00 0.00 40.80 4.35
42 43 3.427638 GGAGTCTGATTCGTTGATCGTGA 60.428 47.826 0.00 0.00 40.80 4.35
43 44 4.355437 GAGTCTGATTCGTTGATCGTGAT 58.645 43.478 0.00 0.00 40.80 3.06
44 45 4.748892 AGTCTGATTCGTTGATCGTGATT 58.251 39.130 0.00 0.00 40.80 2.57
45 46 5.891451 AGTCTGATTCGTTGATCGTGATTA 58.109 37.500 0.00 0.00 40.80 1.75
46 47 6.330278 AGTCTGATTCGTTGATCGTGATTAA 58.670 36.000 0.00 0.00 40.80 1.40
47 48 6.811665 AGTCTGATTCGTTGATCGTGATTAAA 59.188 34.615 0.00 0.00 40.80 1.52
48 49 7.492669 AGTCTGATTCGTTGATCGTGATTAAAT 59.507 33.333 0.00 0.00 40.80 1.40
49 50 7.789759 GTCTGATTCGTTGATCGTGATTAAATC 59.210 37.037 0.00 0.00 40.80 2.17
50 51 7.706607 TCTGATTCGTTGATCGTGATTAAATCT 59.293 33.333 0.00 0.00 40.80 2.40
51 52 8.196802 TGATTCGTTGATCGTGATTAAATCTT 57.803 30.769 0.00 0.00 40.80 2.40
52 53 8.116136 TGATTCGTTGATCGTGATTAAATCTTG 58.884 33.333 0.00 0.00 40.80 3.02
53 54 6.961359 TCGTTGATCGTGATTAAATCTTGT 57.039 33.333 0.00 0.00 40.80 3.16
54 55 6.761117 TCGTTGATCGTGATTAAATCTTGTG 58.239 36.000 0.00 0.00 40.80 3.33
55 56 6.588373 TCGTTGATCGTGATTAAATCTTGTGA 59.412 34.615 0.00 0.00 40.80 3.58
56 57 7.277760 TCGTTGATCGTGATTAAATCTTGTGAT 59.722 33.333 0.00 0.00 40.80 3.06
57 58 7.371615 CGTTGATCGTGATTAAATCTTGTGATG 59.628 37.037 0.00 0.00 32.08 3.07
58 59 7.250445 TGATCGTGATTAAATCTTGTGATGG 57.750 36.000 0.00 0.00 32.44 3.51
59 60 6.823182 TGATCGTGATTAAATCTTGTGATGGT 59.177 34.615 0.00 0.00 32.44 3.55
60 61 6.662414 TCGTGATTAAATCTTGTGATGGTC 57.338 37.500 0.00 0.00 32.44 4.02
61 62 6.169800 TCGTGATTAAATCTTGTGATGGTCA 58.830 36.000 0.00 0.00 32.44 4.02
62 63 6.823182 TCGTGATTAAATCTTGTGATGGTCAT 59.177 34.615 0.00 0.00 32.44 3.06
63 64 7.984617 TCGTGATTAAATCTTGTGATGGTCATA 59.015 33.333 0.00 0.00 32.44 2.15
64 65 8.064222 CGTGATTAAATCTTGTGATGGTCATAC 58.936 37.037 0.00 0.00 32.44 2.39
65 66 8.892723 GTGATTAAATCTTGTGATGGTCATACA 58.107 33.333 0.00 0.00 32.44 2.29
66 67 9.460019 TGATTAAATCTTGTGATGGTCATACAA 57.540 29.630 0.00 0.00 32.44 2.41
72 73 4.842531 TGTGATGGTCATACAAGATGGT 57.157 40.909 0.00 0.00 0.00 3.55
73 74 4.516323 TGTGATGGTCATACAAGATGGTG 58.484 43.478 0.00 0.00 0.00 4.17
74 75 3.879295 GTGATGGTCATACAAGATGGTGG 59.121 47.826 0.00 0.00 0.00 4.61
75 76 3.117926 TGATGGTCATACAAGATGGTGGG 60.118 47.826 0.00 0.00 0.00 4.61
76 77 2.556766 TGGTCATACAAGATGGTGGGA 58.443 47.619 0.00 0.00 0.00 4.37
77 78 3.122480 TGGTCATACAAGATGGTGGGAT 58.878 45.455 0.00 0.00 0.00 3.85
78 79 3.117926 TGGTCATACAAGATGGTGGGATG 60.118 47.826 0.00 0.00 0.00 3.51
79 80 3.136443 GGTCATACAAGATGGTGGGATGA 59.864 47.826 0.00 0.00 0.00 2.92
80 81 4.385199 GGTCATACAAGATGGTGGGATGAA 60.385 45.833 0.00 0.00 30.98 2.57
81 82 4.818546 GTCATACAAGATGGTGGGATGAAG 59.181 45.833 0.00 0.00 30.98 3.02
82 83 2.134789 ACAAGATGGTGGGATGAAGC 57.865 50.000 0.00 0.00 0.00 3.86
83 84 1.637553 ACAAGATGGTGGGATGAAGCT 59.362 47.619 0.00 0.00 0.00 3.74
84 85 2.022195 CAAGATGGTGGGATGAAGCTG 58.978 52.381 0.00 0.00 0.00 4.24
85 86 0.106819 AGATGGTGGGATGAAGCTGC 60.107 55.000 0.00 0.00 0.00 5.25
86 87 0.106819 GATGGTGGGATGAAGCTGCT 60.107 55.000 0.00 0.00 0.00 4.24
87 88 0.395311 ATGGTGGGATGAAGCTGCTG 60.395 55.000 1.35 0.00 0.00 4.41
88 89 2.413142 GGTGGGATGAAGCTGCTGC 61.413 63.158 1.35 7.62 40.05 5.25
89 90 2.437180 TGGGATGAAGCTGCTGCG 60.437 61.111 1.35 0.00 45.42 5.18
90 91 2.124983 GGGATGAAGCTGCTGCGA 60.125 61.111 1.35 0.00 45.42 5.10
91 92 1.525535 GGGATGAAGCTGCTGCGAT 60.526 57.895 1.35 3.22 45.42 4.58
92 93 1.099879 GGGATGAAGCTGCTGCGATT 61.100 55.000 1.35 0.00 45.42 3.34
93 94 0.737219 GGATGAAGCTGCTGCGATTT 59.263 50.000 1.35 0.00 45.42 2.17
94 95 1.133790 GGATGAAGCTGCTGCGATTTT 59.866 47.619 1.35 0.00 45.42 1.82
95 96 2.416431 GGATGAAGCTGCTGCGATTTTT 60.416 45.455 1.35 0.00 45.42 1.94
96 97 2.054687 TGAAGCTGCTGCGATTTTTG 57.945 45.000 1.35 0.00 45.42 2.44
97 98 0.712222 GAAGCTGCTGCGATTTTTGC 59.288 50.000 1.35 0.00 45.42 3.68
98 99 0.032403 AAGCTGCTGCGATTTTTGCA 59.968 45.000 1.35 0.00 45.42 4.08
99 100 0.245539 AGCTGCTGCGATTTTTGCAT 59.754 45.000 10.14 0.00 45.42 3.96
100 101 1.473677 AGCTGCTGCGATTTTTGCATA 59.526 42.857 10.14 0.00 45.42 3.14
101 102 1.850441 GCTGCTGCGATTTTTGCATAG 59.150 47.619 0.00 0.00 42.32 2.23
102 103 2.733227 GCTGCTGCGATTTTTGCATAGT 60.733 45.455 0.00 0.00 42.32 2.12
103 104 2.850060 CTGCTGCGATTTTTGCATAGTG 59.150 45.455 0.00 0.00 42.32 2.74
104 105 2.187707 GCTGCGATTTTTGCATAGTGG 58.812 47.619 0.00 0.00 42.32 4.00
105 106 2.801063 CTGCGATTTTTGCATAGTGGG 58.199 47.619 0.00 0.00 42.32 4.61
106 107 2.164219 CTGCGATTTTTGCATAGTGGGT 59.836 45.455 0.00 0.00 42.32 4.51
107 108 2.094803 TGCGATTTTTGCATAGTGGGTG 60.095 45.455 0.00 0.00 37.44 4.61
108 109 2.094752 GCGATTTTTGCATAGTGGGTGT 60.095 45.455 0.00 0.00 0.00 4.16
109 110 3.613910 GCGATTTTTGCATAGTGGGTGTT 60.614 43.478 0.00 0.00 0.00 3.32
110 111 4.555262 CGATTTTTGCATAGTGGGTGTTT 58.445 39.130 0.00 0.00 0.00 2.83
111 112 4.621034 CGATTTTTGCATAGTGGGTGTTTC 59.379 41.667 0.00 0.00 0.00 2.78
112 113 3.634568 TTTTGCATAGTGGGTGTTTCG 57.365 42.857 0.00 0.00 0.00 3.46
113 114 2.264005 TTGCATAGTGGGTGTTTCGT 57.736 45.000 0.00 0.00 0.00 3.85
114 115 1.803334 TGCATAGTGGGTGTTTCGTC 58.197 50.000 0.00 0.00 0.00 4.20
115 116 1.346395 TGCATAGTGGGTGTTTCGTCT 59.654 47.619 0.00 0.00 0.00 4.18
116 117 2.224426 TGCATAGTGGGTGTTTCGTCTT 60.224 45.455 0.00 0.00 0.00 3.01
117 118 2.415512 GCATAGTGGGTGTTTCGTCTTC 59.584 50.000 0.00 0.00 0.00 2.87
118 119 2.427232 TAGTGGGTGTTTCGTCTTCG 57.573 50.000 0.00 0.00 38.55 3.79
119 120 0.748450 AGTGGGTGTTTCGTCTTCGA 59.252 50.000 0.00 0.00 44.66 3.71
120 121 1.343465 AGTGGGTGTTTCGTCTTCGAT 59.657 47.619 0.00 0.00 45.65 3.59
121 122 2.140717 GTGGGTGTTTCGTCTTCGATT 58.859 47.619 0.00 0.00 45.65 3.34
122 123 2.096417 GTGGGTGTTTCGTCTTCGATTG 60.096 50.000 0.00 0.00 45.65 2.67
123 124 2.140717 GGGTGTTTCGTCTTCGATTGT 58.859 47.619 0.00 0.00 45.65 2.71
124 125 2.096417 GGGTGTTTCGTCTTCGATTGTG 60.096 50.000 0.00 0.00 45.65 3.33
125 126 2.798283 GGTGTTTCGTCTTCGATTGTGA 59.202 45.455 0.00 0.00 45.65 3.58
126 127 3.246699 GGTGTTTCGTCTTCGATTGTGAA 59.753 43.478 0.00 0.00 45.65 3.18
127 128 4.084013 GGTGTTTCGTCTTCGATTGTGAAT 60.084 41.667 0.00 0.00 45.65 2.57
128 129 4.840772 GTGTTTCGTCTTCGATTGTGAATG 59.159 41.667 0.00 0.00 45.65 2.67
129 130 4.509970 TGTTTCGTCTTCGATTGTGAATGT 59.490 37.500 0.00 0.00 45.65 2.71
130 131 4.903638 TTCGTCTTCGATTGTGAATGTC 57.096 40.909 0.00 0.00 45.65 3.06
131 132 3.908213 TCGTCTTCGATTGTGAATGTCA 58.092 40.909 0.00 0.00 41.35 3.58
132 133 4.303282 TCGTCTTCGATTGTGAATGTCAA 58.697 39.130 0.00 0.00 41.35 3.18
133 134 4.747605 TCGTCTTCGATTGTGAATGTCAAA 59.252 37.500 0.00 0.00 41.35 2.69
134 135 5.408299 TCGTCTTCGATTGTGAATGTCAAAT 59.592 36.000 0.00 0.00 41.35 2.32
135 136 6.073276 TCGTCTTCGATTGTGAATGTCAAATT 60.073 34.615 0.00 0.00 41.35 1.82
136 137 6.578545 CGTCTTCGATTGTGAATGTCAAATTT 59.421 34.615 0.00 0.00 39.71 1.82
137 138 7.744276 CGTCTTCGATTGTGAATGTCAAATTTA 59.256 33.333 0.00 0.00 39.71 1.40
138 139 9.393249 GTCTTCGATTGTGAATGTCAAATTTAA 57.607 29.630 0.00 0.00 0.00 1.52
139 140 9.611284 TCTTCGATTGTGAATGTCAAATTTAAG 57.389 29.630 0.00 0.00 0.00 1.85
140 141 7.795431 TCGATTGTGAATGTCAAATTTAAGC 57.205 32.000 0.00 0.00 0.00 3.09
141 142 7.366513 TCGATTGTGAATGTCAAATTTAAGCA 58.633 30.769 0.00 0.00 0.00 3.91
142 143 8.028354 TCGATTGTGAATGTCAAATTTAAGCAT 58.972 29.630 0.00 0.00 0.00 3.79
143 144 8.649841 CGATTGTGAATGTCAAATTTAAGCATT 58.350 29.630 11.40 11.40 33.14 3.56
168 169 9.638239 TTATTTTCATAGTTCAAATCAAGTGGC 57.362 29.630 0.00 0.00 0.00 5.01
169 170 6.647334 TTTCATAGTTCAAATCAAGTGGCA 57.353 33.333 0.00 0.00 0.00 4.92
170 171 5.627499 TCATAGTTCAAATCAAGTGGCAC 57.373 39.130 10.29 10.29 0.00 5.01
171 172 5.069318 TCATAGTTCAAATCAAGTGGCACA 58.931 37.500 21.41 0.00 0.00 4.57
172 173 5.711506 TCATAGTTCAAATCAAGTGGCACAT 59.288 36.000 21.41 4.57 44.52 3.21
173 174 4.247267 AGTTCAAATCAAGTGGCACATG 57.753 40.909 21.41 18.72 44.52 3.21
174 175 3.638160 AGTTCAAATCAAGTGGCACATGT 59.362 39.130 21.41 6.28 44.52 3.21
175 176 3.646611 TCAAATCAAGTGGCACATGTG 57.353 42.857 21.83 21.83 44.52 3.21
221 222 9.931210 GTAATAAATTTTCTTGTATCTGGACGG 57.069 33.333 0.00 0.00 0.00 4.79
222 223 8.801882 AATAAATTTTCTTGTATCTGGACGGA 57.198 30.769 0.00 0.00 0.00 4.69
223 224 8.980481 ATAAATTTTCTTGTATCTGGACGGAT 57.020 30.769 0.00 0.00 0.00 4.18
225 226 8.438676 AAATTTTCTTGTATCTGGACGGATAG 57.561 34.615 1.18 0.00 0.00 2.08
226 227 4.585955 TTCTTGTATCTGGACGGATAGC 57.414 45.455 1.18 0.00 0.00 2.97
227 228 2.891580 TCTTGTATCTGGACGGATAGCC 59.108 50.000 1.18 0.00 0.00 3.93
228 229 2.677542 TGTATCTGGACGGATAGCCT 57.322 50.000 0.00 0.00 0.00 4.58
229 230 2.958818 TGTATCTGGACGGATAGCCTT 58.041 47.619 0.00 0.00 0.00 4.35
230 231 2.891580 TGTATCTGGACGGATAGCCTTC 59.108 50.000 0.00 0.00 0.00 3.46
231 232 2.088104 ATCTGGACGGATAGCCTTCA 57.912 50.000 5.81 0.00 34.25 3.02
232 233 1.403814 TCTGGACGGATAGCCTTCAG 58.596 55.000 5.81 5.47 34.25 3.02
233 234 0.390860 CTGGACGGATAGCCTTCAGG 59.609 60.000 5.81 0.00 34.25 3.86
246 247 2.451490 CCTTCAGGCTGTCTAGTCTCA 58.549 52.381 15.27 0.00 36.54 3.27
247 248 2.828520 CCTTCAGGCTGTCTAGTCTCAA 59.171 50.000 15.27 0.00 36.54 3.02
248 249 3.259374 CCTTCAGGCTGTCTAGTCTCAAA 59.741 47.826 15.27 0.00 36.54 2.69
249 250 3.944055 TCAGGCTGTCTAGTCTCAAAC 57.056 47.619 15.27 0.00 36.54 2.93
250 251 2.563179 TCAGGCTGTCTAGTCTCAAACC 59.437 50.000 15.27 0.00 36.54 3.27
251 252 2.564947 CAGGCTGTCTAGTCTCAAACCT 59.435 50.000 6.28 0.00 36.54 3.50
252 253 2.829120 AGGCTGTCTAGTCTCAAACCTC 59.171 50.000 0.00 0.00 32.01 3.85
253 254 2.416162 GGCTGTCTAGTCTCAAACCTCG 60.416 54.545 0.00 0.00 0.00 4.63
254 255 2.229302 GCTGTCTAGTCTCAAACCTCGT 59.771 50.000 0.00 0.00 0.00 4.18
255 256 3.827625 CTGTCTAGTCTCAAACCTCGTG 58.172 50.000 0.00 0.00 0.00 4.35
256 257 2.557056 TGTCTAGTCTCAAACCTCGTGG 59.443 50.000 0.99 0.99 39.83 4.94
257 258 2.818432 GTCTAGTCTCAAACCTCGTGGA 59.182 50.000 11.17 0.00 37.04 4.02
258 259 2.818432 TCTAGTCTCAAACCTCGTGGAC 59.182 50.000 11.17 0.00 37.04 4.02
259 260 0.314302 AGTCTCAAACCTCGTGGACG 59.686 55.000 11.17 0.00 41.45 4.79
270 271 0.813184 TCGTGGACGATACCAGTTCC 59.187 55.000 0.00 0.00 44.22 3.62
271 272 0.815734 CGTGGACGATACCAGTTCCT 59.184 55.000 0.00 0.00 43.02 3.36
272 273 1.202268 CGTGGACGATACCAGTTCCTC 60.202 57.143 0.00 0.00 43.02 3.71
273 274 1.136500 GTGGACGATACCAGTTCCTCC 59.864 57.143 0.00 0.00 40.85 4.30
274 275 1.006758 TGGACGATACCAGTTCCTCCT 59.993 52.381 0.00 0.00 34.77 3.69
275 276 2.242965 TGGACGATACCAGTTCCTCCTA 59.757 50.000 0.00 0.00 34.77 2.94
276 277 3.294214 GGACGATACCAGTTCCTCCTAA 58.706 50.000 0.00 0.00 0.00 2.69
277 278 3.703052 GGACGATACCAGTTCCTCCTAAA 59.297 47.826 0.00 0.00 0.00 1.85
278 279 4.161001 GGACGATACCAGTTCCTCCTAAAA 59.839 45.833 0.00 0.00 0.00 1.52
279 280 5.337813 GGACGATACCAGTTCCTCCTAAAAA 60.338 44.000 0.00 0.00 0.00 1.94
299 300 5.845391 AAAAAGAAAAACCTCATGGACGA 57.155 34.783 0.00 0.00 37.04 4.20
300 301 6.405278 AAAAAGAAAAACCTCATGGACGAT 57.595 33.333 0.00 0.00 37.04 3.73
301 302 5.376854 AAAGAAAAACCTCATGGACGATG 57.623 39.130 0.00 0.00 37.04 3.84
302 303 4.021102 AGAAAAACCTCATGGACGATGT 57.979 40.909 0.00 0.00 37.04 3.06
303 304 5.160607 AGAAAAACCTCATGGACGATGTA 57.839 39.130 0.00 0.00 37.04 2.29
304 305 5.556915 AGAAAAACCTCATGGACGATGTAA 58.443 37.500 0.00 0.00 37.04 2.41
305 306 6.001460 AGAAAAACCTCATGGACGATGTAAA 58.999 36.000 0.00 0.00 37.04 2.01
306 307 6.659242 AGAAAAACCTCATGGACGATGTAAAT 59.341 34.615 0.00 0.00 37.04 1.40
307 308 6.436843 AAAACCTCATGGACGATGTAAATC 57.563 37.500 0.00 0.00 37.04 2.17
308 309 5.359194 AACCTCATGGACGATGTAAATCT 57.641 39.130 0.00 0.00 37.04 2.40
309 310 5.359194 ACCTCATGGACGATGTAAATCTT 57.641 39.130 0.00 0.00 37.04 2.40
310 311 6.479972 ACCTCATGGACGATGTAAATCTTA 57.520 37.500 0.00 0.00 37.04 2.10
311 312 7.067496 ACCTCATGGACGATGTAAATCTTAT 57.933 36.000 0.00 0.00 37.04 1.73
312 313 7.155328 ACCTCATGGACGATGTAAATCTTATC 58.845 38.462 0.00 0.00 37.04 1.75
313 314 7.015682 ACCTCATGGACGATGTAAATCTTATCT 59.984 37.037 0.00 0.00 37.04 1.98
314 315 7.330454 CCTCATGGACGATGTAAATCTTATCTG 59.670 40.741 0.00 0.00 33.29 2.90
315 316 7.951591 TCATGGACGATGTAAATCTTATCTGA 58.048 34.615 0.00 0.00 33.29 3.27
316 317 8.084684 TCATGGACGATGTAAATCTTATCTGAG 58.915 37.037 0.00 0.00 33.29 3.35
317 318 7.348080 TGGACGATGTAAATCTTATCTGAGT 57.652 36.000 0.00 0.00 0.00 3.41
318 319 7.426410 TGGACGATGTAAATCTTATCTGAGTC 58.574 38.462 0.00 0.00 0.00 3.36
319 320 7.068226 TGGACGATGTAAATCTTATCTGAGTCA 59.932 37.037 0.00 0.00 0.00 3.41
320 321 7.921214 GGACGATGTAAATCTTATCTGAGTCAA 59.079 37.037 0.00 0.00 0.00 3.18
321 322 9.469807 GACGATGTAAATCTTATCTGAGTCAAT 57.530 33.333 0.00 0.00 0.00 2.57
330 331 9.487790 AATCTTATCTGAGTCAATAAAGCTAGC 57.512 33.333 6.62 6.62 0.00 3.42
331 332 7.437748 TCTTATCTGAGTCAATAAAGCTAGCC 58.562 38.462 12.13 0.00 0.00 3.93
332 333 5.620738 ATCTGAGTCAATAAAGCTAGCCA 57.379 39.130 12.13 0.00 0.00 4.75
333 334 5.620738 TCTGAGTCAATAAAGCTAGCCAT 57.379 39.130 12.13 2.74 0.00 4.40
334 335 5.363101 TCTGAGTCAATAAAGCTAGCCATG 58.637 41.667 12.13 3.85 0.00 3.66
335 336 5.129320 TCTGAGTCAATAAAGCTAGCCATGA 59.871 40.000 12.13 6.28 0.00 3.07
336 337 5.933617 TGAGTCAATAAAGCTAGCCATGAT 58.066 37.500 12.13 0.00 0.00 2.45
337 338 5.761726 TGAGTCAATAAAGCTAGCCATGATG 59.238 40.000 12.13 6.10 0.00 3.07
338 339 5.068636 AGTCAATAAAGCTAGCCATGATGG 58.931 41.667 12.13 7.21 41.55 3.51
406 407 1.227556 ATAGCATCCAACGGCCGTC 60.228 57.895 34.29 18.32 0.00 4.79
435 436 2.220761 GCTGAGCGAGGAAATAGCG 58.779 57.895 0.00 0.00 34.23 4.26
436 437 0.249073 GCTGAGCGAGGAAATAGCGA 60.249 55.000 0.00 0.00 34.23 4.93
437 438 1.802880 GCTGAGCGAGGAAATAGCGAA 60.803 52.381 0.00 0.00 34.23 4.70
438 439 1.855360 CTGAGCGAGGAAATAGCGAAC 59.145 52.381 0.00 0.00 34.23 3.95
439 440 0.847035 GAGCGAGGAAATAGCGAACG 59.153 55.000 0.00 0.00 34.23 3.95
440 441 0.172803 AGCGAGGAAATAGCGAACGT 59.827 50.000 0.00 0.00 34.23 3.99
441 442 0.571197 GCGAGGAAATAGCGAACGTC 59.429 55.000 0.00 0.00 0.00 4.34
442 443 0.838229 CGAGGAAATAGCGAACGTCG 59.162 55.000 0.00 0.00 43.89 5.12
443 444 1.197910 GAGGAAATAGCGAACGTCGG 58.802 55.000 8.96 0.00 40.84 4.79
457 458 3.984018 ACGTCGGTTCGTTATCATTTG 57.016 42.857 0.00 0.00 41.37 2.32
458 459 2.093152 ACGTCGGTTCGTTATCATTTGC 59.907 45.455 0.00 0.00 41.37 3.68
460 461 2.346244 GTCGGTTCGTTATCATTTGCGA 59.654 45.455 0.00 0.00 0.00 5.10
904 1000 0.536724 TCTGGTCATCGGTCATGTGG 59.463 55.000 0.00 0.00 33.66 4.17
929 1025 1.857364 CCTTGTCGTAACGTGGTGC 59.143 57.895 0.00 0.00 0.00 5.01
946 1042 2.223947 GGTGCCTCGTGGTTTCATTTTT 60.224 45.455 5.26 0.00 35.27 1.94
947 1043 3.049912 GTGCCTCGTGGTTTCATTTTTC 58.950 45.455 5.26 0.00 35.27 2.29
1000 1097 2.718073 TTCGGCGGAAGAGTAGGGC 61.718 63.158 7.21 0.00 0.00 5.19
1602 1707 4.963276 TTTCAGTTGTTGAGGTTCAGTG 57.037 40.909 0.00 0.00 37.07 3.66
1608 1713 2.426522 TGTTGAGGTTCAGTGCTATGC 58.573 47.619 0.00 0.00 0.00 3.14
1650 1755 9.826574 TTTTACTTCTGCTTTCTGTAGTTAAGA 57.173 29.630 0.00 0.00 0.00 2.10
1883 1988 7.781324 ACCATCCAGACATTTTCTAAACAAT 57.219 32.000 0.00 0.00 31.12 2.71
1914 2019 6.261118 GGCTGTTATTTCATGAGATGTGTTC 58.739 40.000 8.95 0.00 0.00 3.18
2111 2216 7.505585 TGATTGTGAATACCTTTGGTTTCTTCT 59.494 33.333 0.00 0.00 37.09 2.85
2254 2515 3.181530 CCAAAATAAGTGTCGCTGACTCG 60.182 47.826 9.49 0.00 33.15 4.18
2306 2567 4.584874 TCAGTGACACTTTCTTTTGGACA 58.415 39.130 5.04 0.00 0.00 4.02
2307 2568 5.192927 TCAGTGACACTTTCTTTTGGACAT 58.807 37.500 5.04 0.00 0.00 3.06
2595 2856 2.027100 GGGAGGAACAGTAACAAGGGAG 60.027 54.545 0.00 0.00 0.00 4.30
2661 2922 8.421249 TTGAAGATCCTGATGGTTACAAATTT 57.579 30.769 0.00 0.00 34.23 1.82
2899 3160 7.039714 GGAAAGACAATCCTCAATACAAGGTTT 60.040 37.037 0.00 0.00 35.29 3.27
2921 3182 4.476297 TGTACTCTCCTGAAACCAGTACA 58.524 43.478 6.21 6.21 44.49 2.90
2926 3187 3.321111 TCTCCTGAAACCAGTACAGTGAC 59.679 47.826 0.00 0.00 0.00 3.67
3089 3350 4.403734 TGAGATGGTAAAAGGTTTCACCC 58.596 43.478 0.00 0.00 39.75 4.61
3090 3351 4.105697 TGAGATGGTAAAAGGTTTCACCCT 59.894 41.667 0.00 0.00 39.75 4.34
3183 3444 8.761575 TTTATGGTTGTAGTAAAGGTTACGAG 57.238 34.615 0.00 0.00 0.00 4.18
3250 3515 3.450904 AGGCATAACTCCCTGTTGACTA 58.549 45.455 0.00 0.00 39.55 2.59
3251 3516 3.844211 AGGCATAACTCCCTGTTGACTAA 59.156 43.478 0.00 0.00 39.55 2.24
3325 3590 8.747538 TCCTTCTAGGTTAAATATTTGCCTTC 57.252 34.615 22.70 6.25 36.53 3.46
3479 3748 6.884295 TGCTATAACTGCTAGGTTGTTTTCAT 59.116 34.615 0.00 0.00 0.00 2.57
3509 3778 3.170717 TGTCCTTCTATGACCGAGGTTT 58.829 45.455 0.00 0.00 31.60 3.27
3599 3868 7.767659 TGTTTTGACCATGACATTTTCATTCAA 59.232 29.630 0.00 0.00 42.87 2.69
3755 4025 3.411446 CACTGCCACTTCTCATTGGTTA 58.589 45.455 0.00 0.00 35.09 2.85
3844 4117 5.051409 TGTGCATATTCATCATCCCTTCA 57.949 39.130 0.00 0.00 0.00 3.02
3855 4128 6.012113 TCATCATCCCTTCAATGTGAACTTT 58.988 36.000 0.00 0.00 32.21 2.66
3968 4241 6.374053 TGGAGTTGACATACAATTATGGTGTG 59.626 38.462 0.00 0.00 39.70 3.82
4058 4334 4.218200 TGTTCCATTGTTTACTCATGCCTG 59.782 41.667 0.00 0.00 0.00 4.85
4084 4360 4.436050 GCGTTACACTTCTGATGGTTGATG 60.436 45.833 0.00 0.00 0.00 3.07
4313 4589 4.518590 TCATGTGTGTGGGAGTTGTATTTG 59.481 41.667 0.00 0.00 0.00 2.32
4456 4732 4.709397 ACCAAAGTAGGACAGATCTCTCAG 59.291 45.833 0.16 0.00 0.00 3.35
4618 4894 7.689299 TGGAAGAATGAGTTTTCAGGAAGATA 58.311 34.615 0.00 0.00 36.61 1.98
4639 4915 7.203910 AGATATCATCTTCGTACAGGTTTCAC 58.796 38.462 5.32 0.00 35.76 3.18
4643 4919 1.798813 CTTCGTACAGGTTTCACTGGC 59.201 52.381 0.00 0.00 42.75 4.85
4691 5107 4.467438 CCCCCATGAAATCTTGTAAAAGCT 59.533 41.667 0.00 0.00 0.00 3.74
4694 5110 5.801947 CCCATGAAATCTTGTAAAAGCTTCG 59.198 40.000 0.00 0.00 0.00 3.79
4744 5160 2.631062 TCTACCGTGTCATCACTGGTTT 59.369 45.455 15.34 1.52 43.29 3.27
4912 5328 7.692460 TCAGATGAACTAATCTTTGCACATT 57.308 32.000 0.00 0.00 34.60 2.71
4928 5344 4.219070 TGCACATTAGCTCATTCTTTGCTT 59.781 37.500 0.00 0.00 38.15 3.91
5004 5420 0.927537 CGTGAACAGAACTCGTTGCA 59.072 50.000 0.00 0.00 0.00 4.08
5015 5431 0.392193 CTCGTTGCAATCTCTGGGCT 60.392 55.000 0.59 0.00 0.00 5.19
5100 5516 3.609853 GTCATGTAGACCTGAAATGCCA 58.390 45.455 0.00 0.00 41.56 4.92
5125 5541 2.347731 CCGCACCCTAGAGAAGAAAAC 58.652 52.381 0.00 0.00 0.00 2.43
5150 5566 4.307259 TGAAGAGGGCCTATAGAATGGTT 58.693 43.478 5.73 0.00 0.00 3.67
5155 5571 2.040412 GGGCCTATAGAATGGTTGAGGG 59.960 54.545 0.84 0.00 0.00 4.30
5173 5589 1.747774 GCCAGCCAAAGGAGCAAAA 59.252 52.632 0.00 0.00 0.00 2.44
5203 5625 0.409876 TGCCTGTCTGGTAGTCCTCT 59.590 55.000 0.00 0.00 38.35 3.69
5219 5641 3.583526 GTCCTCTAACTCCCAACTCCTTT 59.416 47.826 0.00 0.00 0.00 3.11
5259 5681 2.419713 GGTCCGAACAGGGTAAATCCTC 60.420 54.545 0.00 0.00 41.52 3.71
5448 8000 7.378966 TGGAATAGAGCTCCACGAATTAATAG 58.621 38.462 10.93 0.00 38.07 1.73
5471 8023 3.898741 GGTACCCCATGGAAAGAAAACAA 59.101 43.478 15.22 0.00 34.81 2.83
5498 8050 7.982761 AGAATTAGCCATCTCAATTCTCATC 57.017 36.000 3.56 0.00 42.51 2.92
5499 8051 6.941436 AGAATTAGCCATCTCAATTCTCATCC 59.059 38.462 3.56 0.00 42.51 3.51
5529 8081 7.257790 TCTCACTTAAATTCTCATTCCCTCA 57.742 36.000 0.00 0.00 0.00 3.86
5530 8082 7.689299 TCTCACTTAAATTCTCATTCCCTCAA 58.311 34.615 0.00 0.00 0.00 3.02
5531 8083 7.607991 TCTCACTTAAATTCTCATTCCCTCAAC 59.392 37.037 0.00 0.00 0.00 3.18
5532 8084 7.461749 TCACTTAAATTCTCATTCCCTCAACT 58.538 34.615 0.00 0.00 0.00 3.16
5533 8085 7.607991 TCACTTAAATTCTCATTCCCTCAACTC 59.392 37.037 0.00 0.00 0.00 3.01
5534 8086 6.887002 ACTTAAATTCTCATTCCCTCAACTCC 59.113 38.462 0.00 0.00 0.00 3.85
5535 8087 5.527026 AAATTCTCATTCCCTCAACTCCT 57.473 39.130 0.00 0.00 0.00 3.69
5536 8088 3.988976 TTCTCATTCCCTCAACTCCTG 57.011 47.619 0.00 0.00 0.00 3.86
5537 8089 2.907892 TCTCATTCCCTCAACTCCTGT 58.092 47.619 0.00 0.00 0.00 4.00
5538 8090 3.251484 TCTCATTCCCTCAACTCCTGTT 58.749 45.455 0.00 0.00 36.75 3.16
5539 8091 3.261897 TCTCATTCCCTCAACTCCTGTTC 59.738 47.826 0.00 0.00 33.52 3.18
5540 8092 2.305927 TCATTCCCTCAACTCCTGTTCC 59.694 50.000 0.00 0.00 33.52 3.62
5541 8093 1.064825 TTCCCTCAACTCCTGTTCCC 58.935 55.000 0.00 0.00 33.52 3.97
5542 8094 0.840722 TCCCTCAACTCCTGTTCCCC 60.841 60.000 0.00 0.00 33.52 4.81
5543 8095 1.133809 CCCTCAACTCCTGTTCCCCA 61.134 60.000 0.00 0.00 33.52 4.96
5544 8096 0.036875 CCTCAACTCCTGTTCCCCAC 59.963 60.000 0.00 0.00 33.52 4.61
5545 8097 0.036875 CTCAACTCCTGTTCCCCACC 59.963 60.000 0.00 0.00 33.52 4.61
5546 8098 0.401395 TCAACTCCTGTTCCCCACCT 60.401 55.000 0.00 0.00 33.52 4.00
5547 8099 0.036875 CAACTCCTGTTCCCCACCTC 59.963 60.000 0.00 0.00 33.52 3.85
5548 8100 0.104409 AACTCCTGTTCCCCACCTCT 60.104 55.000 0.00 0.00 0.00 3.69
5549 8101 0.790993 ACTCCTGTTCCCCACCTCTA 59.209 55.000 0.00 0.00 0.00 2.43
5550 8102 1.151413 ACTCCTGTTCCCCACCTCTAA 59.849 52.381 0.00 0.00 0.00 2.10
5551 8103 2.225908 ACTCCTGTTCCCCACCTCTAAT 60.226 50.000 0.00 0.00 0.00 1.73
5552 8104 2.846827 CTCCTGTTCCCCACCTCTAATT 59.153 50.000 0.00 0.00 0.00 1.40
5553 8105 2.844348 TCCTGTTCCCCACCTCTAATTC 59.156 50.000 0.00 0.00 0.00 2.17
5554 8106 2.576191 CCTGTTCCCCACCTCTAATTCA 59.424 50.000 0.00 0.00 0.00 2.57
5555 8107 3.610911 CTGTTCCCCACCTCTAATTCAC 58.389 50.000 0.00 0.00 0.00 3.18
5556 8108 2.983192 TGTTCCCCACCTCTAATTCACA 59.017 45.455 0.00 0.00 0.00 3.58
5557 8109 3.244770 TGTTCCCCACCTCTAATTCACAC 60.245 47.826 0.00 0.00 0.00 3.82
5558 8110 1.553248 TCCCCACCTCTAATTCACACG 59.447 52.381 0.00 0.00 0.00 4.49
5559 8111 1.553248 CCCCACCTCTAATTCACACGA 59.447 52.381 0.00 0.00 0.00 4.35
5560 8112 2.027561 CCCCACCTCTAATTCACACGAA 60.028 50.000 0.00 0.00 35.05 3.85
5561 8113 3.000727 CCCACCTCTAATTCACACGAAC 58.999 50.000 0.00 0.00 32.81 3.95
5562 8114 3.000727 CCACCTCTAATTCACACGAACC 58.999 50.000 0.00 0.00 32.81 3.62
5563 8115 3.556213 CCACCTCTAATTCACACGAACCA 60.556 47.826 0.00 0.00 32.81 3.67
5564 8116 4.062293 CACCTCTAATTCACACGAACCAA 58.938 43.478 0.00 0.00 32.81 3.67
5565 8117 4.513692 CACCTCTAATTCACACGAACCAAA 59.486 41.667 0.00 0.00 32.81 3.28
5566 8118 4.514066 ACCTCTAATTCACACGAACCAAAC 59.486 41.667 0.00 0.00 32.81 2.93
5567 8119 4.513692 CCTCTAATTCACACGAACCAAACA 59.486 41.667 0.00 0.00 32.81 2.83
5568 8120 5.181245 CCTCTAATTCACACGAACCAAACAT 59.819 40.000 0.00 0.00 32.81 2.71
5569 8121 5.996219 TCTAATTCACACGAACCAAACATG 58.004 37.500 0.00 0.00 32.81 3.21
5570 8122 2.483583 TTCACACGAACCAAACATGC 57.516 45.000 0.00 0.00 0.00 4.06
5571 8123 1.674359 TCACACGAACCAAACATGCT 58.326 45.000 0.00 0.00 0.00 3.79
5572 8124 2.839975 TCACACGAACCAAACATGCTA 58.160 42.857 0.00 0.00 0.00 3.49
5573 8125 2.546368 TCACACGAACCAAACATGCTAC 59.454 45.455 0.00 0.00 0.00 3.58
5574 8126 1.529438 ACACGAACCAAACATGCTACG 59.471 47.619 0.00 0.00 0.00 3.51
5575 8127 1.795872 CACGAACCAAACATGCTACGA 59.204 47.619 0.00 0.00 0.00 3.43
5576 8128 2.222213 CACGAACCAAACATGCTACGAA 59.778 45.455 0.00 0.00 0.00 3.85
5577 8129 2.873472 ACGAACCAAACATGCTACGAAA 59.127 40.909 0.00 0.00 0.00 3.46
5578 8130 3.059188 ACGAACCAAACATGCTACGAAAG 60.059 43.478 0.00 0.00 0.00 2.62
5580 8132 4.553938 CGAACCAAACATGCTACGAAAGTT 60.554 41.667 0.00 0.00 46.40 2.66
5581 8133 4.223320 ACCAAACATGCTACGAAAGTTG 57.777 40.909 0.00 0.00 46.40 3.16
5582 8134 3.004315 ACCAAACATGCTACGAAAGTTGG 59.996 43.478 0.00 0.00 46.40 3.77
5583 8135 3.004315 CCAAACATGCTACGAAAGTTGGT 59.996 43.478 0.00 0.00 46.40 3.67
5584 8136 4.219033 CAAACATGCTACGAAAGTTGGTC 58.781 43.478 0.00 0.00 46.40 4.02
5585 8137 3.402628 ACATGCTACGAAAGTTGGTCT 57.597 42.857 0.00 0.00 46.40 3.85
5586 8138 4.530710 ACATGCTACGAAAGTTGGTCTA 57.469 40.909 0.00 0.00 46.40 2.59
5587 8139 4.890088 ACATGCTACGAAAGTTGGTCTAA 58.110 39.130 0.00 0.00 46.40 2.10
5588 8140 5.302360 ACATGCTACGAAAGTTGGTCTAAA 58.698 37.500 0.00 0.00 46.40 1.85
5589 8141 5.938125 ACATGCTACGAAAGTTGGTCTAAAT 59.062 36.000 0.00 0.00 46.40 1.40
5590 8142 6.430000 ACATGCTACGAAAGTTGGTCTAAATT 59.570 34.615 0.00 0.00 46.40 1.82
5591 8143 7.604927 ACATGCTACGAAAGTTGGTCTAAATTA 59.395 33.333 0.00 0.00 46.40 1.40
5592 8144 7.355332 TGCTACGAAAGTTGGTCTAAATTAC 57.645 36.000 0.00 0.00 46.40 1.89
5593 8145 6.369615 TGCTACGAAAGTTGGTCTAAATTACC 59.630 38.462 0.00 0.00 46.40 2.85
5594 8146 6.183360 GCTACGAAAGTTGGTCTAAATTACCC 60.183 42.308 0.00 0.00 46.40 3.69
5595 8147 5.005740 ACGAAAGTTGGTCTAAATTACCCC 58.994 41.667 0.00 0.00 46.40 4.95
5596 8148 5.221986 ACGAAAGTTGGTCTAAATTACCCCT 60.222 40.000 0.00 0.00 46.40 4.79
5597 8149 5.708697 CGAAAGTTGGTCTAAATTACCCCTT 59.291 40.000 0.00 0.00 36.06 3.95
5598 8150 6.349033 CGAAAGTTGGTCTAAATTACCCCTTG 60.349 42.308 0.00 0.00 36.06 3.61
5599 8151 5.594199 AGTTGGTCTAAATTACCCCTTGT 57.406 39.130 0.00 0.00 36.06 3.16
5600 8152 5.960704 AGTTGGTCTAAATTACCCCTTGTT 58.039 37.500 0.00 0.00 36.06 2.83
5601 8153 5.773176 AGTTGGTCTAAATTACCCCTTGTTG 59.227 40.000 0.00 0.00 36.06 3.33
5602 8154 4.083565 TGGTCTAAATTACCCCTTGTTGC 58.916 43.478 0.00 0.00 36.06 4.17
5603 8155 3.446161 GGTCTAAATTACCCCTTGTTGCC 59.554 47.826 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.066587 CCTCCACTCGCGAGAATCC 59.933 63.158 40.58 0.00 41.32 3.01
1 2 1.590259 GCCTCCACTCGCGAGAATC 60.590 63.158 40.58 18.78 41.32 2.52
2 3 2.496817 GCCTCCACTCGCGAGAAT 59.503 61.111 40.58 18.63 41.32 2.40
8 9 4.500116 GACTCCGCCTCCACTCGC 62.500 72.222 0.00 0.00 0.00 5.03
9 10 2.752238 AGACTCCGCCTCCACTCG 60.752 66.667 0.00 0.00 0.00 4.18
10 11 1.040339 ATCAGACTCCGCCTCCACTC 61.040 60.000 0.00 0.00 0.00 3.51
11 12 0.616111 AATCAGACTCCGCCTCCACT 60.616 55.000 0.00 0.00 0.00 4.00
12 13 0.179097 GAATCAGACTCCGCCTCCAC 60.179 60.000 0.00 0.00 0.00 4.02
13 14 1.667154 CGAATCAGACTCCGCCTCCA 61.667 60.000 0.00 0.00 0.00 3.86
14 15 1.066587 CGAATCAGACTCCGCCTCC 59.933 63.158 0.00 0.00 0.00 4.30
15 16 0.173708 AACGAATCAGACTCCGCCTC 59.826 55.000 0.00 0.00 0.00 4.70
16 17 0.108615 CAACGAATCAGACTCCGCCT 60.109 55.000 0.00 0.00 0.00 5.52
17 18 0.108804 TCAACGAATCAGACTCCGCC 60.109 55.000 0.00 0.00 0.00 6.13
18 19 1.855360 GATCAACGAATCAGACTCCGC 59.145 52.381 0.00 0.00 0.00 5.54
19 20 2.112522 CGATCAACGAATCAGACTCCG 58.887 52.381 0.00 0.00 45.77 4.63
20 21 2.854777 CACGATCAACGAATCAGACTCC 59.145 50.000 0.00 0.00 45.77 3.85
21 22 3.759418 TCACGATCAACGAATCAGACTC 58.241 45.455 0.00 0.00 45.77 3.36
22 23 3.850122 TCACGATCAACGAATCAGACT 57.150 42.857 0.00 0.00 45.77 3.24
23 24 6.569228 TTAATCACGATCAACGAATCAGAC 57.431 37.500 0.00 0.00 45.77 3.51
24 25 7.706607 AGATTTAATCACGATCAACGAATCAGA 59.293 33.333 7.74 0.00 45.77 3.27
25 26 7.845483 AGATTTAATCACGATCAACGAATCAG 58.155 34.615 7.74 0.00 45.77 2.90
26 27 7.770801 AGATTTAATCACGATCAACGAATCA 57.229 32.000 7.74 0.00 45.77 2.57
27 28 8.116753 ACAAGATTTAATCACGATCAACGAATC 58.883 33.333 7.74 0.00 45.77 2.52
28 29 7.904977 CACAAGATTTAATCACGATCAACGAAT 59.095 33.333 7.74 0.00 45.77 3.34
29 30 7.117092 TCACAAGATTTAATCACGATCAACGAA 59.883 33.333 7.74 0.00 45.77 3.85
30 31 6.588373 TCACAAGATTTAATCACGATCAACGA 59.412 34.615 7.74 0.00 45.77 3.85
31 32 7.371615 CATCACAAGATTTAATCACGATCAACG 59.628 37.037 7.74 0.00 39.22 4.10
32 33 7.641411 CCATCACAAGATTTAATCACGATCAAC 59.359 37.037 7.74 0.00 30.20 3.18
33 34 7.336679 ACCATCACAAGATTTAATCACGATCAA 59.663 33.333 7.74 0.00 30.20 2.57
34 35 6.823182 ACCATCACAAGATTTAATCACGATCA 59.177 34.615 7.74 0.00 30.20 2.92
35 36 7.011389 TGACCATCACAAGATTTAATCACGATC 59.989 37.037 7.74 0.00 30.20 3.69
36 37 6.823182 TGACCATCACAAGATTTAATCACGAT 59.177 34.615 7.74 1.09 30.20 3.73
37 38 6.169800 TGACCATCACAAGATTTAATCACGA 58.830 36.000 7.74 0.00 30.20 4.35
38 39 6.421377 TGACCATCACAAGATTTAATCACG 57.579 37.500 7.74 0.31 30.20 4.35
39 40 8.892723 TGTATGACCATCACAAGATTTAATCAC 58.107 33.333 7.74 0.00 30.20 3.06
40 41 9.460019 TTGTATGACCATCACAAGATTTAATCA 57.540 29.630 7.74 0.00 30.20 2.57
49 50 5.065602 CACCATCTTGTATGACCATCACAAG 59.934 44.000 16.92 16.92 46.76 3.16
50 51 4.943093 CACCATCTTGTATGACCATCACAA 59.057 41.667 0.00 0.00 0.00 3.33
51 52 4.516323 CACCATCTTGTATGACCATCACA 58.484 43.478 0.00 0.00 0.00 3.58
52 53 3.879295 CCACCATCTTGTATGACCATCAC 59.121 47.826 0.00 0.00 0.00 3.06
53 54 3.117926 CCCACCATCTTGTATGACCATCA 60.118 47.826 0.00 0.00 0.00 3.07
54 55 3.136443 TCCCACCATCTTGTATGACCATC 59.864 47.826 0.00 0.00 0.00 3.51
55 56 3.122480 TCCCACCATCTTGTATGACCAT 58.878 45.455 0.00 0.00 0.00 3.55
56 57 2.556766 TCCCACCATCTTGTATGACCA 58.443 47.619 0.00 0.00 0.00 4.02
57 58 3.136443 TCATCCCACCATCTTGTATGACC 59.864 47.826 0.00 0.00 0.00 4.02
58 59 4.422073 TCATCCCACCATCTTGTATGAC 57.578 45.455 0.00 0.00 0.00 3.06
59 60 4.686944 GCTTCATCCCACCATCTTGTATGA 60.687 45.833 0.00 0.00 0.00 2.15
60 61 3.567164 GCTTCATCCCACCATCTTGTATG 59.433 47.826 0.00 0.00 0.00 2.39
61 62 3.461085 AGCTTCATCCCACCATCTTGTAT 59.539 43.478 0.00 0.00 0.00 2.29
62 63 2.846206 AGCTTCATCCCACCATCTTGTA 59.154 45.455 0.00 0.00 0.00 2.41
63 64 1.637553 AGCTTCATCCCACCATCTTGT 59.362 47.619 0.00 0.00 0.00 3.16
64 65 2.022195 CAGCTTCATCCCACCATCTTG 58.978 52.381 0.00 0.00 0.00 3.02
65 66 1.684248 GCAGCTTCATCCCACCATCTT 60.684 52.381 0.00 0.00 0.00 2.40
66 67 0.106819 GCAGCTTCATCCCACCATCT 60.107 55.000 0.00 0.00 0.00 2.90
67 68 0.106819 AGCAGCTTCATCCCACCATC 60.107 55.000 0.00 0.00 0.00 3.51
68 69 0.395311 CAGCAGCTTCATCCCACCAT 60.395 55.000 0.00 0.00 0.00 3.55
69 70 1.001764 CAGCAGCTTCATCCCACCA 60.002 57.895 0.00 0.00 0.00 4.17
70 71 2.413142 GCAGCAGCTTCATCCCACC 61.413 63.158 0.00 0.00 37.91 4.61
71 72 2.758089 CGCAGCAGCTTCATCCCAC 61.758 63.158 0.00 0.00 39.10 4.61
72 73 2.261430 ATCGCAGCAGCTTCATCCCA 62.261 55.000 0.00 0.00 39.10 4.37
73 74 1.099879 AATCGCAGCAGCTTCATCCC 61.100 55.000 0.00 0.00 39.10 3.85
74 75 0.737219 AAATCGCAGCAGCTTCATCC 59.263 50.000 0.00 0.00 39.10 3.51
75 76 2.556534 AAAATCGCAGCAGCTTCATC 57.443 45.000 0.00 0.00 39.10 2.92
76 77 2.602878 CAAAAATCGCAGCAGCTTCAT 58.397 42.857 0.00 0.00 39.10 2.57
77 78 1.931709 GCAAAAATCGCAGCAGCTTCA 60.932 47.619 0.00 0.00 39.10 3.02
78 79 0.712222 GCAAAAATCGCAGCAGCTTC 59.288 50.000 0.00 0.00 39.10 3.86
79 80 0.032403 TGCAAAAATCGCAGCAGCTT 59.968 45.000 0.00 0.00 39.10 3.74
80 81 0.245539 ATGCAAAAATCGCAGCAGCT 59.754 45.000 0.00 0.00 43.88 4.24
81 82 1.850441 CTATGCAAAAATCGCAGCAGC 59.150 47.619 0.00 0.00 43.88 5.25
82 83 2.850060 CACTATGCAAAAATCGCAGCAG 59.150 45.455 0.00 0.00 43.88 4.24
83 84 2.415759 CCACTATGCAAAAATCGCAGCA 60.416 45.455 0.00 0.00 43.88 4.41
84 85 2.187707 CCACTATGCAAAAATCGCAGC 58.812 47.619 0.00 0.00 43.88 5.25
85 86 2.164219 ACCCACTATGCAAAAATCGCAG 59.836 45.455 0.00 0.00 43.88 5.18
86 87 2.094803 CACCCACTATGCAAAAATCGCA 60.095 45.455 0.00 0.00 44.94 5.10
87 88 2.094752 ACACCCACTATGCAAAAATCGC 60.095 45.455 0.00 0.00 0.00 4.58
88 89 3.848272 ACACCCACTATGCAAAAATCG 57.152 42.857 0.00 0.00 0.00 3.34
89 90 4.621034 CGAAACACCCACTATGCAAAAATC 59.379 41.667 0.00 0.00 0.00 2.17
90 91 4.038642 ACGAAACACCCACTATGCAAAAAT 59.961 37.500 0.00 0.00 0.00 1.82
91 92 3.381908 ACGAAACACCCACTATGCAAAAA 59.618 39.130 0.00 0.00 0.00 1.94
92 93 2.952978 ACGAAACACCCACTATGCAAAA 59.047 40.909 0.00 0.00 0.00 2.44
93 94 2.550606 GACGAAACACCCACTATGCAAA 59.449 45.455 0.00 0.00 0.00 3.68
94 95 2.147958 GACGAAACACCCACTATGCAA 58.852 47.619 0.00 0.00 0.00 4.08
95 96 1.346395 AGACGAAACACCCACTATGCA 59.654 47.619 0.00 0.00 0.00 3.96
96 97 2.094762 AGACGAAACACCCACTATGC 57.905 50.000 0.00 0.00 0.00 3.14
97 98 2.666508 CGAAGACGAAACACCCACTATG 59.333 50.000 0.00 0.00 42.66 2.23
98 99 2.559668 TCGAAGACGAAACACCCACTAT 59.440 45.455 0.00 0.00 45.74 2.12
99 100 1.955778 TCGAAGACGAAACACCCACTA 59.044 47.619 0.00 0.00 45.74 2.74
100 101 0.748450 TCGAAGACGAAACACCCACT 59.252 50.000 0.00 0.00 45.74 4.00
101 102 3.277652 TCGAAGACGAAACACCCAC 57.722 52.632 0.00 0.00 45.74 4.61
111 112 4.645667 TTGACATTCACAATCGAAGACG 57.354 40.909 0.00 0.00 42.51 4.18
112 113 7.858052 AAATTTGACATTCACAATCGAAGAC 57.142 32.000 0.00 0.00 42.51 3.01
113 114 9.611284 CTTAAATTTGACATTCACAATCGAAGA 57.389 29.630 0.00 0.00 45.75 2.87
114 115 8.368126 GCTTAAATTTGACATTCACAATCGAAG 58.632 33.333 0.00 0.00 0.00 3.79
115 116 7.864882 TGCTTAAATTTGACATTCACAATCGAA 59.135 29.630 0.00 0.00 0.00 3.71
116 117 7.366513 TGCTTAAATTTGACATTCACAATCGA 58.633 30.769 0.00 0.00 0.00 3.59
117 118 7.565450 TGCTTAAATTTGACATTCACAATCG 57.435 32.000 0.00 0.00 0.00 3.34
142 143 9.638239 GCCACTTGATTTGAACTATGAAAATAA 57.362 29.630 0.00 0.00 0.00 1.40
143 144 8.801299 TGCCACTTGATTTGAACTATGAAAATA 58.199 29.630 0.00 0.00 0.00 1.40
144 145 7.599998 GTGCCACTTGATTTGAACTATGAAAAT 59.400 33.333 0.00 0.00 0.00 1.82
145 146 6.922957 GTGCCACTTGATTTGAACTATGAAAA 59.077 34.615 0.00 0.00 0.00 2.29
146 147 6.040278 TGTGCCACTTGATTTGAACTATGAAA 59.960 34.615 0.00 0.00 0.00 2.69
147 148 5.534278 TGTGCCACTTGATTTGAACTATGAA 59.466 36.000 0.00 0.00 0.00 2.57
148 149 5.069318 TGTGCCACTTGATTTGAACTATGA 58.931 37.500 0.00 0.00 0.00 2.15
149 150 5.375417 TGTGCCACTTGATTTGAACTATG 57.625 39.130 0.00 0.00 0.00 2.23
150 151 5.477984 ACATGTGCCACTTGATTTGAACTAT 59.522 36.000 16.67 0.00 0.00 2.12
151 152 4.826733 ACATGTGCCACTTGATTTGAACTA 59.173 37.500 16.67 0.00 0.00 2.24
152 153 3.638160 ACATGTGCCACTTGATTTGAACT 59.362 39.130 16.67 0.00 0.00 3.01
153 154 3.737266 CACATGTGCCACTTGATTTGAAC 59.263 43.478 13.94 0.00 0.00 3.18
154 155 3.979948 CACATGTGCCACTTGATTTGAA 58.020 40.909 13.94 0.00 0.00 2.69
155 156 3.646611 CACATGTGCCACTTGATTTGA 57.353 42.857 13.94 0.00 0.00 2.69
195 196 9.931210 CCGTCCAGATACAAGAAAATTTATTAC 57.069 33.333 0.00 0.00 0.00 1.89
196 197 9.893634 TCCGTCCAGATACAAGAAAATTTATTA 57.106 29.630 0.00 0.00 0.00 0.98
197 198 8.801882 TCCGTCCAGATACAAGAAAATTTATT 57.198 30.769 0.00 0.00 0.00 1.40
198 199 8.980481 ATCCGTCCAGATACAAGAAAATTTAT 57.020 30.769 0.00 0.00 0.00 1.40
199 200 9.542462 CTATCCGTCCAGATACAAGAAAATTTA 57.458 33.333 0.00 0.00 0.00 1.40
200 201 7.012421 GCTATCCGTCCAGATACAAGAAAATTT 59.988 37.037 0.00 0.00 0.00 1.82
201 202 6.483640 GCTATCCGTCCAGATACAAGAAAATT 59.516 38.462 0.00 0.00 0.00 1.82
202 203 5.992217 GCTATCCGTCCAGATACAAGAAAAT 59.008 40.000 0.00 0.00 0.00 1.82
203 204 5.357257 GCTATCCGTCCAGATACAAGAAAA 58.643 41.667 0.00 0.00 0.00 2.29
204 205 4.202223 GGCTATCCGTCCAGATACAAGAAA 60.202 45.833 0.00 0.00 0.00 2.52
205 206 3.321111 GGCTATCCGTCCAGATACAAGAA 59.679 47.826 0.00 0.00 0.00 2.52
206 207 2.891580 GGCTATCCGTCCAGATACAAGA 59.108 50.000 0.00 0.00 0.00 3.02
207 208 2.894126 AGGCTATCCGTCCAGATACAAG 59.106 50.000 0.00 0.00 37.47 3.16
208 209 2.958818 AGGCTATCCGTCCAGATACAA 58.041 47.619 0.00 0.00 37.47 2.41
209 210 2.677542 AGGCTATCCGTCCAGATACA 57.322 50.000 0.00 0.00 37.47 2.29
210 211 2.891580 TGAAGGCTATCCGTCCAGATAC 59.108 50.000 0.00 0.00 39.70 2.24
211 212 3.157881 CTGAAGGCTATCCGTCCAGATA 58.842 50.000 0.00 0.00 39.70 1.98
212 213 1.967066 CTGAAGGCTATCCGTCCAGAT 59.033 52.381 0.00 0.00 39.70 2.90
213 214 1.403814 CTGAAGGCTATCCGTCCAGA 58.596 55.000 0.00 0.00 39.70 3.86
214 215 0.390860 CCTGAAGGCTATCCGTCCAG 59.609 60.000 0.00 0.00 39.70 3.86
215 216 2.516448 CCTGAAGGCTATCCGTCCA 58.484 57.895 0.00 0.00 39.70 4.02
226 227 2.451490 TGAGACTAGACAGCCTGAAGG 58.549 52.381 0.00 0.00 38.53 3.46
227 228 4.241681 GTTTGAGACTAGACAGCCTGAAG 58.758 47.826 0.00 0.00 0.00 3.02
228 229 3.006967 GGTTTGAGACTAGACAGCCTGAA 59.993 47.826 0.00 0.00 0.00 3.02
229 230 2.563179 GGTTTGAGACTAGACAGCCTGA 59.437 50.000 0.00 0.00 0.00 3.86
230 231 2.564947 AGGTTTGAGACTAGACAGCCTG 59.435 50.000 0.00 0.00 0.00 4.85
231 232 2.829120 GAGGTTTGAGACTAGACAGCCT 59.171 50.000 0.00 5.68 0.00 4.58
232 233 2.416162 CGAGGTTTGAGACTAGACAGCC 60.416 54.545 0.00 1.28 0.00 4.85
233 234 2.229302 ACGAGGTTTGAGACTAGACAGC 59.771 50.000 0.00 0.00 0.00 4.40
234 235 3.366476 CCACGAGGTTTGAGACTAGACAG 60.366 52.174 0.00 0.00 0.00 3.51
235 236 2.557056 CCACGAGGTTTGAGACTAGACA 59.443 50.000 0.00 0.00 0.00 3.41
236 237 2.818432 TCCACGAGGTTTGAGACTAGAC 59.182 50.000 0.00 0.00 35.89 2.59
237 238 2.818432 GTCCACGAGGTTTGAGACTAGA 59.182 50.000 0.00 0.00 35.89 2.43
238 239 2.414293 CGTCCACGAGGTTTGAGACTAG 60.414 54.545 0.00 0.00 43.02 2.57
239 240 1.538512 CGTCCACGAGGTTTGAGACTA 59.461 52.381 0.00 0.00 43.02 2.59
240 241 0.314302 CGTCCACGAGGTTTGAGACT 59.686 55.000 0.00 0.00 43.02 3.24
241 242 0.313043 TCGTCCACGAGGTTTGAGAC 59.687 55.000 0.00 0.00 44.22 3.36
242 243 2.723231 TCGTCCACGAGGTTTGAGA 58.277 52.632 0.00 0.00 44.22 3.27
250 251 3.521943 AGGAACTGGTATCGTCCACGAG 61.522 54.545 7.98 0.00 46.15 4.18
251 252 1.615116 AGGAACTGGTATCGTCCACGA 60.615 52.381 3.92 3.92 46.79 4.35
252 253 0.815734 AGGAACTGGTATCGTCCACG 59.184 55.000 0.00 0.00 37.18 4.94
253 254 1.136500 GGAGGAACTGGTATCGTCCAC 59.864 57.143 9.67 0.00 46.29 4.02
254 255 1.481871 GGAGGAACTGGTATCGTCCA 58.518 55.000 9.67 0.00 46.29 4.02
256 257 4.996788 TTTAGGAGGAACTGGTATCGTC 57.003 45.455 0.00 0.00 41.55 4.20
257 258 5.750352 TTTTTAGGAGGAACTGGTATCGT 57.250 39.130 0.00 0.00 41.55 3.73
277 278 5.845391 TCGTCCATGAGGTTTTTCTTTTT 57.155 34.783 0.00 0.00 35.89 1.94
278 279 5.301805 ACATCGTCCATGAGGTTTTTCTTTT 59.698 36.000 0.00 0.00 36.21 2.27
279 280 4.827284 ACATCGTCCATGAGGTTTTTCTTT 59.173 37.500 0.00 0.00 36.21 2.52
280 281 4.398319 ACATCGTCCATGAGGTTTTTCTT 58.602 39.130 0.00 0.00 36.21 2.52
281 282 4.021102 ACATCGTCCATGAGGTTTTTCT 57.979 40.909 0.00 0.00 36.21 2.52
282 283 5.873179 TTACATCGTCCATGAGGTTTTTC 57.127 39.130 0.00 0.00 34.32 2.29
283 284 6.659242 AGATTTACATCGTCCATGAGGTTTTT 59.341 34.615 0.00 0.00 34.32 1.94
284 285 6.180472 AGATTTACATCGTCCATGAGGTTTT 58.820 36.000 0.00 0.00 34.32 2.43
285 286 5.745227 AGATTTACATCGTCCATGAGGTTT 58.255 37.500 0.00 0.00 34.32 3.27
286 287 5.359194 AGATTTACATCGTCCATGAGGTT 57.641 39.130 0.00 0.00 34.32 3.50
287 288 5.359194 AAGATTTACATCGTCCATGAGGT 57.641 39.130 0.00 0.00 36.71 3.85
288 289 7.330454 CAGATAAGATTTACATCGTCCATGAGG 59.670 40.741 0.00 0.00 36.21 3.86
289 290 8.084684 TCAGATAAGATTTACATCGTCCATGAG 58.915 37.037 0.00 0.00 36.21 2.90
290 291 7.951591 TCAGATAAGATTTACATCGTCCATGA 58.048 34.615 0.00 0.00 36.21 3.07
291 292 7.869937 ACTCAGATAAGATTTACATCGTCCATG 59.130 37.037 0.00 0.00 38.64 3.66
292 293 7.957002 ACTCAGATAAGATTTACATCGTCCAT 58.043 34.615 0.00 0.00 34.17 3.41
293 294 7.068226 TGACTCAGATAAGATTTACATCGTCCA 59.932 37.037 0.00 0.00 34.17 4.02
294 295 7.426410 TGACTCAGATAAGATTTACATCGTCC 58.574 38.462 0.00 0.00 34.17 4.79
295 296 8.858003 TTGACTCAGATAAGATTTACATCGTC 57.142 34.615 0.00 0.00 34.17 4.20
304 305 9.487790 GCTAGCTTTATTGACTCAGATAAGATT 57.512 33.333 7.70 0.00 0.00 2.40
305 306 8.093927 GGCTAGCTTTATTGACTCAGATAAGAT 58.906 37.037 15.72 0.00 0.00 2.40
306 307 7.069950 TGGCTAGCTTTATTGACTCAGATAAGA 59.930 37.037 15.72 0.00 0.00 2.10
307 308 7.212976 TGGCTAGCTTTATTGACTCAGATAAG 58.787 38.462 15.72 0.00 0.00 1.73
308 309 7.124573 TGGCTAGCTTTATTGACTCAGATAA 57.875 36.000 15.72 0.00 0.00 1.75
309 310 6.731292 TGGCTAGCTTTATTGACTCAGATA 57.269 37.500 15.72 0.00 0.00 1.98
310 311 5.620738 TGGCTAGCTTTATTGACTCAGAT 57.379 39.130 15.72 0.00 0.00 2.90
311 312 5.129320 TCATGGCTAGCTTTATTGACTCAGA 59.871 40.000 15.72 0.00 0.00 3.27
312 313 5.363101 TCATGGCTAGCTTTATTGACTCAG 58.637 41.667 15.72 0.00 0.00 3.35
313 314 5.357742 TCATGGCTAGCTTTATTGACTCA 57.642 39.130 15.72 0.00 0.00 3.41
314 315 5.180868 CCATCATGGCTAGCTTTATTGACTC 59.819 44.000 15.72 0.00 0.00 3.36
315 316 5.068636 CCATCATGGCTAGCTTTATTGACT 58.931 41.667 15.72 0.12 0.00 3.41
316 317 5.368256 CCATCATGGCTAGCTTTATTGAC 57.632 43.478 15.72 0.00 0.00 3.18
347 348 4.041723 CGTTGTCTGCGAAAATCCTTTTT 58.958 39.130 0.00 0.00 37.75 1.94
348 349 3.550030 CCGTTGTCTGCGAAAATCCTTTT 60.550 43.478 0.00 0.00 35.12 2.27
349 350 2.031157 CCGTTGTCTGCGAAAATCCTTT 60.031 45.455 0.00 0.00 0.00 3.11
350 351 1.535462 CCGTTGTCTGCGAAAATCCTT 59.465 47.619 0.00 0.00 0.00 3.36
351 352 1.156736 CCGTTGTCTGCGAAAATCCT 58.843 50.000 0.00 0.00 0.00 3.24
352 353 0.454452 GCCGTTGTCTGCGAAAATCC 60.454 55.000 0.00 0.00 0.00 3.01
353 354 0.237235 TGCCGTTGTCTGCGAAAATC 59.763 50.000 0.00 0.00 0.00 2.17
354 355 0.040425 GTGCCGTTGTCTGCGAAAAT 60.040 50.000 0.00 0.00 0.00 1.82
355 356 1.353804 GTGCCGTTGTCTGCGAAAA 59.646 52.632 0.00 0.00 0.00 2.29
356 357 2.876879 CGTGCCGTTGTCTGCGAAA 61.877 57.895 0.00 0.00 0.00 3.46
357 358 3.334751 CGTGCCGTTGTCTGCGAA 61.335 61.111 0.00 0.00 0.00 4.70
364 365 3.876589 AATCTCCGCGTGCCGTTGT 62.877 57.895 4.92 0.00 34.38 3.32
365 366 2.677003 AAATCTCCGCGTGCCGTTG 61.677 57.895 4.92 0.00 34.38 4.10
419 420 1.797713 CGTTCGCTATTTCCTCGCTCA 60.798 52.381 0.00 0.00 0.00 4.26
421 422 0.172803 ACGTTCGCTATTTCCTCGCT 59.827 50.000 0.00 0.00 0.00 4.93
438 439 2.689635 GCAAATGATAACGAACCGACG 58.310 47.619 0.00 0.00 39.31 5.12
439 440 2.346244 TCGCAAATGATAACGAACCGAC 59.654 45.455 0.00 0.00 0.00 4.79
440 441 2.608268 TCGCAAATGATAACGAACCGA 58.392 42.857 0.00 0.00 0.00 4.69
441 442 3.377434 TTCGCAAATGATAACGAACCG 57.623 42.857 0.00 0.00 39.40 4.44
466 467 2.726691 CGCGCCGACTTCGTGATTT 61.727 57.895 0.00 0.00 39.53 2.17
904 1000 1.278238 CGTTACGACAAGGCCATCTC 58.722 55.000 5.01 0.00 0.00 2.75
929 1025 6.419710 GGTAAAAGAAAAATGAAACCACGAGG 59.580 38.462 0.00 0.00 42.21 4.63
1092 1189 4.135153 CACTCCACGGCCTCCTCG 62.135 72.222 0.00 0.00 0.00 4.63
1416 1516 4.286808 TGGAAGACAAAGAGATGACATGGA 59.713 41.667 0.00 0.00 0.00 3.41
1602 1707 2.821991 ATTAGACCGACTGGCATAGC 57.178 50.000 0.00 0.00 39.70 2.97
1608 1713 8.818057 CAGAAGTAAAAATATTAGACCGACTGG 58.182 37.037 0.00 0.00 42.84 4.00
1650 1755 1.726791 CTTGACACGCGATTAGTGCTT 59.273 47.619 15.93 0.00 42.94 3.91
1883 1988 6.430864 TCTCATGAAATAACAGCCCCAATTA 58.569 36.000 0.00 0.00 0.00 1.40
1914 2019 4.202111 GGACATGAAAATATGGGGAAACGG 60.202 45.833 0.00 0.00 32.32 4.44
2111 2216 7.211573 TGAAGACTCTTAACGTAATTTCCACA 58.788 34.615 0.00 0.00 0.00 4.17
2480 2741 6.822170 CAGCTCTTATGGATGTATGCATATGT 59.178 38.462 10.16 1.43 40.13 2.29
2595 2856 0.958876 CACCTTTTACCGGACCTGGC 60.959 60.000 9.46 0.00 0.00 4.85
2661 2922 4.406003 GTGGGACCTCTTTCTATAAGCTCA 59.594 45.833 0.00 0.00 0.00 4.26
2899 3160 4.476297 TGTACTGGTTTCAGGAGAGTACA 58.524 43.478 0.00 0.00 44.12 2.90
2921 3182 5.280317 AACCGATGTTATAAAGTGGGTCACT 60.280 40.000 5.79 0.00 38.56 3.41
2926 3187 5.365619 AGCTAACCGATGTTATAAAGTGGG 58.634 41.667 0.00 0.00 36.40 4.61
3089 3350 2.362077 AGCCTACAACAAACTTGCCAAG 59.638 45.455 2.11 2.11 0.00 3.61
3090 3351 2.383855 AGCCTACAACAAACTTGCCAA 58.616 42.857 0.00 0.00 0.00 4.52
3250 3515 3.650942 TGGTATCAGGGAACACAGAAGTT 59.349 43.478 0.00 0.00 0.00 2.66
3251 3516 3.248024 TGGTATCAGGGAACACAGAAGT 58.752 45.455 0.00 0.00 0.00 3.01
3479 3748 6.153851 TCGGTCATAGAAGGACAAGTTTCATA 59.846 38.462 0.00 0.00 37.00 2.15
3599 3868 1.156736 GCTTGAACGTGGCACTACAT 58.843 50.000 16.72 0.00 0.00 2.29
3715 3985 3.332485 AGTGCCAGGGTTACAATCCTAAA 59.668 43.478 0.00 0.00 37.45 1.85
3721 3991 2.961424 GCAGTGCCAGGGTTACAAT 58.039 52.632 2.85 0.00 0.00 2.71
3817 4090 6.072649 AGGGATGATGAATATGCACATTTCA 58.927 36.000 9.45 9.45 34.18 2.69
4048 4324 1.156736 GTAACGCAACAGGCATGAGT 58.843 50.000 4.84 0.00 45.17 3.41
4058 4334 2.806244 ACCATCAGAAGTGTAACGCAAC 59.194 45.455 0.00 0.00 45.86 4.17
4084 4360 2.887152 AGCAATCTGGAAGGACACAAAC 59.113 45.455 0.00 0.00 0.00 2.93
4153 4429 1.979308 TCACGAGTTATTTGTCCCCCA 59.021 47.619 0.00 0.00 0.00 4.96
4278 4554 3.004734 CACACACATGAAGGGGAGAAAAC 59.995 47.826 0.00 0.00 0.00 2.43
4313 4589 5.979517 CCAGGAACAGACAATCTTTCAAAAC 59.020 40.000 0.00 0.00 0.00 2.43
4477 4753 4.677584 AGCAATAGCACAACGAAAAACAA 58.322 34.783 0.00 0.00 45.49 2.83
4618 4894 5.171476 CAGTGAAACCTGTACGAAGATGAT 58.829 41.667 0.00 0.00 37.80 2.45
4628 4904 3.306472 AAAAGGCCAGTGAAACCTGTA 57.694 42.857 5.01 0.00 37.80 2.74
4639 4915 1.537202 CAACTCGAGGAAAAAGGCCAG 59.463 52.381 18.41 0.00 0.00 4.85
4643 4919 2.416893 GCTAGCAACTCGAGGAAAAAGG 59.583 50.000 18.41 2.48 0.00 3.11
4672 4948 8.154868 CTTCGAAGCTTTTACAAGATTTCATG 57.845 34.615 13.09 0.00 38.78 3.07
4691 5107 3.587797 ATCTACAAACCTCGCTTCGAA 57.412 42.857 0.00 0.00 34.74 3.71
4694 5110 4.388378 ACCTATCTACAAACCTCGCTTC 57.612 45.455 0.00 0.00 0.00 3.86
4744 5160 9.959721 AAGTAGCAAACCTAATTCTCTATGAAA 57.040 29.630 0.00 0.00 38.29 2.69
4912 5328 6.389830 TTTGAACAAGCAAAGAATGAGCTA 57.610 33.333 0.00 0.00 37.70 3.32
4928 5344 2.178580 GGCATCCCAAGGATTTGAACA 58.821 47.619 0.00 0.00 39.79 3.18
5004 5420 2.744494 GCGAGATGAAAGCCCAGAGATT 60.744 50.000 0.00 0.00 0.00 2.40
5015 5431 1.806542 GTTTGCTCTGGCGAGATGAAA 59.193 47.619 0.00 0.00 39.74 2.69
5125 5541 4.310769 CATTCTATAGGCCCTCTTCAACG 58.689 47.826 0.00 0.00 0.00 4.10
5150 5566 2.858476 TCCTTTGGCTGGCCCTCA 60.858 61.111 9.28 0.00 34.56 3.86
5155 5571 0.322648 ATTTTGCTCCTTTGGCTGGC 59.677 50.000 0.00 0.00 0.00 4.85
5173 5589 5.242795 ACCAGACAGGCACTAAGTAAAAT 57.757 39.130 0.00 0.00 43.14 1.82
5203 5625 4.287845 GGGAGTTAAAGGAGTTGGGAGTTA 59.712 45.833 0.00 0.00 0.00 2.24
5237 5659 1.648504 GATTTACCCTGTTCGGACCG 58.351 55.000 7.84 7.84 33.16 4.79
5259 5681 4.511826 AGCCAACTTCTTGTTCTAAACTCG 59.488 41.667 0.00 0.00 36.63 4.18
5334 5756 0.110238 CAATCTCCCACGTGCAAACG 60.110 55.000 10.91 0.00 39.31 3.60
5461 8013 8.810041 AGATGGCTAATTCTCATTGTTTTCTTT 58.190 29.630 0.00 0.00 0.00 2.52
5499 8051 5.179452 TGAGAATTTAAGTGAGAAGGGGG 57.821 43.478 0.00 0.00 0.00 5.40
5529 8081 0.104409 AGAGGTGGGGAACAGGAGTT 60.104 55.000 0.00 0.00 41.64 3.01
5530 8082 0.790993 TAGAGGTGGGGAACAGGAGT 59.209 55.000 0.00 0.00 0.00 3.85
5531 8083 1.952621 TTAGAGGTGGGGAACAGGAG 58.047 55.000 0.00 0.00 0.00 3.69
5532 8084 2.661176 ATTAGAGGTGGGGAACAGGA 57.339 50.000 0.00 0.00 0.00 3.86
5533 8085 2.576191 TGAATTAGAGGTGGGGAACAGG 59.424 50.000 0.00 0.00 0.00 4.00
5534 8086 3.009033 TGTGAATTAGAGGTGGGGAACAG 59.991 47.826 0.00 0.00 0.00 3.16
5535 8087 2.983192 TGTGAATTAGAGGTGGGGAACA 59.017 45.455 0.00 0.00 0.00 3.18
5536 8088 3.344515 GTGTGAATTAGAGGTGGGGAAC 58.655 50.000 0.00 0.00 0.00 3.62
5537 8089 2.027561 CGTGTGAATTAGAGGTGGGGAA 60.028 50.000 0.00 0.00 0.00 3.97
5538 8090 1.553248 CGTGTGAATTAGAGGTGGGGA 59.447 52.381 0.00 0.00 0.00 4.81
5539 8091 1.553248 TCGTGTGAATTAGAGGTGGGG 59.447 52.381 0.00 0.00 0.00 4.96
5540 8092 3.000727 GTTCGTGTGAATTAGAGGTGGG 58.999 50.000 0.00 0.00 36.29 4.61
5541 8093 3.000727 GGTTCGTGTGAATTAGAGGTGG 58.999 50.000 0.00 0.00 36.29 4.61
5542 8094 3.659786 TGGTTCGTGTGAATTAGAGGTG 58.340 45.455 0.00 0.00 36.29 4.00
5543 8095 4.345859 TTGGTTCGTGTGAATTAGAGGT 57.654 40.909 0.00 0.00 36.29 3.85
5544 8096 4.513692 TGTTTGGTTCGTGTGAATTAGAGG 59.486 41.667 0.00 0.00 36.29 3.69
5545 8097 5.666969 TGTTTGGTTCGTGTGAATTAGAG 57.333 39.130 0.00 0.00 36.29 2.43
5546 8098 5.561919 GCATGTTTGGTTCGTGTGAATTAGA 60.562 40.000 0.00 0.00 36.29 2.10
5547 8099 4.616802 GCATGTTTGGTTCGTGTGAATTAG 59.383 41.667 0.00 0.00 36.29 1.73
5548 8100 4.277174 AGCATGTTTGGTTCGTGTGAATTA 59.723 37.500 0.00 0.00 36.29 1.40
5549 8101 3.068024 AGCATGTTTGGTTCGTGTGAATT 59.932 39.130 0.00 0.00 36.29 2.17
5550 8102 2.622942 AGCATGTTTGGTTCGTGTGAAT 59.377 40.909 0.00 0.00 36.29 2.57
5551 8103 2.020720 AGCATGTTTGGTTCGTGTGAA 58.979 42.857 0.00 0.00 0.00 3.18
5552 8104 1.674359 AGCATGTTTGGTTCGTGTGA 58.326 45.000 0.00 0.00 0.00 3.58
5553 8105 2.661709 CGTAGCATGTTTGGTTCGTGTG 60.662 50.000 0.00 0.00 38.71 3.82
5554 8106 1.529438 CGTAGCATGTTTGGTTCGTGT 59.471 47.619 0.00 0.00 38.71 4.49
5555 8107 1.795872 TCGTAGCATGTTTGGTTCGTG 59.204 47.619 0.00 0.00 42.45 4.35
5556 8108 2.157834 TCGTAGCATGTTTGGTTCGT 57.842 45.000 0.00 0.00 42.45 3.85
5557 8109 3.059188 ACTTTCGTAGCATGTTTGGTTCG 60.059 43.478 0.00 0.00 42.98 3.95
5558 8110 4.483476 ACTTTCGTAGCATGTTTGGTTC 57.517 40.909 0.00 0.00 34.79 3.62
5559 8111 4.499019 CCAACTTTCGTAGCATGTTTGGTT 60.499 41.667 0.00 0.00 34.79 3.67
5560 8112 3.004315 CCAACTTTCGTAGCATGTTTGGT 59.996 43.478 0.00 0.00 37.36 3.67
5561 8113 3.004315 ACCAACTTTCGTAGCATGTTTGG 59.996 43.478 0.00 0.00 0.00 3.28
5562 8114 4.024048 AGACCAACTTTCGTAGCATGTTTG 60.024 41.667 0.00 0.00 0.00 2.93
5563 8115 4.134563 AGACCAACTTTCGTAGCATGTTT 58.865 39.130 0.00 0.00 0.00 2.83
5564 8116 3.740115 AGACCAACTTTCGTAGCATGTT 58.260 40.909 0.00 0.00 0.00 2.71
5565 8117 3.402628 AGACCAACTTTCGTAGCATGT 57.597 42.857 0.00 0.00 0.00 3.21
5566 8118 5.856126 TTTAGACCAACTTTCGTAGCATG 57.144 39.130 0.00 0.00 0.00 4.06
5567 8119 7.065443 GGTAATTTAGACCAACTTTCGTAGCAT 59.935 37.037 0.00 0.00 36.91 3.79
5568 8120 6.369615 GGTAATTTAGACCAACTTTCGTAGCA 59.630 38.462 0.00 0.00 36.91 3.49
5569 8121 6.183360 GGGTAATTTAGACCAACTTTCGTAGC 60.183 42.308 0.00 0.00 38.86 3.58
5570 8122 6.314648 GGGGTAATTTAGACCAACTTTCGTAG 59.685 42.308 0.00 0.00 38.86 3.51
5571 8123 6.013466 AGGGGTAATTTAGACCAACTTTCGTA 60.013 38.462 0.00 0.00 38.86 3.43
5572 8124 5.005740 GGGGTAATTTAGACCAACTTTCGT 58.994 41.667 0.00 0.00 38.86 3.85
5573 8125 5.250982 AGGGGTAATTTAGACCAACTTTCG 58.749 41.667 0.00 0.00 38.86 3.46
5574 8126 6.492429 ACAAGGGGTAATTTAGACCAACTTTC 59.508 38.462 0.00 0.00 38.86 2.62
5575 8127 6.378745 ACAAGGGGTAATTTAGACCAACTTT 58.621 36.000 0.00 0.00 38.86 2.66
5576 8128 5.960704 ACAAGGGGTAATTTAGACCAACTT 58.039 37.500 0.00 0.14 38.86 2.66
5577 8129 5.594199 ACAAGGGGTAATTTAGACCAACT 57.406 39.130 0.00 0.00 38.86 3.16
5578 8130 5.566032 GCAACAAGGGGTAATTTAGACCAAC 60.566 44.000 0.00 0.00 38.86 3.77
5579 8131 4.525100 GCAACAAGGGGTAATTTAGACCAA 59.475 41.667 0.00 0.00 38.86 3.67
5580 8132 4.083565 GCAACAAGGGGTAATTTAGACCA 58.916 43.478 0.00 0.00 38.86 4.02
5581 8133 3.446161 GGCAACAAGGGGTAATTTAGACC 59.554 47.826 0.00 0.00 36.12 3.85
5582 8134 4.713824 GGCAACAAGGGGTAATTTAGAC 57.286 45.455 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.