Multiple sequence alignment - TraesCS1D01G123700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G123700 chr1D 100.000 5138 0 0 1 5138 125868920 125863783 0.000000e+00 9489.0
1 TraesCS1D01G123700 chr1B 93.829 4829 144 40 1 4765 189719727 189714989 0.000000e+00 7125.0
2 TraesCS1D01G123700 chr1B 97.587 373 9 0 4766 5138 189714777 189714405 1.560000e-179 640.0
3 TraesCS1D01G123700 chr1B 89.610 77 5 3 114 188 74895488 74895413 1.520000e-15 95.3
4 TraesCS1D01G123700 chr1A 91.562 2560 108 35 1 2459 139642115 139639563 0.000000e+00 3432.0
5 TraesCS1D01G123700 chr1A 95.191 2017 68 10 2466 4471 139638723 139636725 0.000000e+00 3160.0
6 TraesCS1D01G123700 chr1A 85.405 185 15 9 4590 4764 139636592 139636410 1.140000e-41 182.0
7 TraesCS1D01G123700 chr1A 86.290 124 10 1 4981 5097 139635950 139635827 1.500000e-25 128.0
8 TraesCS1D01G123700 chr2D 93.605 172 9 1 128 297 168153973 168153802 6.600000e-64 255.0
9 TraesCS1D01G123700 chr2D 86.567 67 5 4 4533 4597 218373977 218373913 2.570000e-08 71.3
10 TraesCS1D01G123700 chr7A 87.817 197 18 3 107 297 462450560 462450756 5.180000e-55 226.0
11 TraesCS1D01G123700 chr2B 84.158 101 15 1 4487 4587 416183973 416184072 4.230000e-16 97.1
12 TraesCS1D01G123700 chr3A 88.889 54 5 1 4535 4588 158209589 158209641 1.190000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G123700 chr1D 125863783 125868920 5137 True 9489.0 9489 100.000 1 5138 1 chr1D.!!$R1 5137
1 TraesCS1D01G123700 chr1B 189714405 189719727 5322 True 3882.5 7125 95.708 1 5138 2 chr1B.!!$R2 5137
2 TraesCS1D01G123700 chr1A 139635827 139642115 6288 True 1725.5 3432 89.612 1 5097 4 chr1A.!!$R1 5096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
921 995 0.613012 CTTCTTTTCCTGCCCCTGGG 60.613 60.000 5.50 5.5 38.57 4.45 F
922 996 1.071314 TTCTTTTCCTGCCCCTGGGA 61.071 55.000 16.20 0.0 37.50 4.37 F
952 1026 1.673033 CGCTTGGTTCTCGGTTGATCT 60.673 52.381 0.00 0.0 0.00 2.75 F
2459 2597 2.307686 ACCCTGTATTGTTGGTACCTGG 59.692 50.000 14.36 0.0 0.00 4.45 F
3484 4455 1.215382 CTTGGCGACATCGTGAGGA 59.785 57.895 0.00 0.0 42.32 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2459 2597 1.009829 GCCAACGAGACCATCACATC 58.990 55.000 0.0 0.0 0.00 3.06 R
2575 3546 2.435586 CCTCTGCTTGCCGTCCAG 60.436 66.667 0.0 0.0 0.00 3.86 R
2688 3659 3.687212 CCACAAAGCATGGAATACGTACA 59.313 43.478 0.0 0.0 39.87 2.90 R
4039 5010 0.693049 ACCAACTCCGATGCTTCCTT 59.307 50.000 0.0 0.0 0.00 3.36 R
4782 6029 1.488812 TGTGTGGTGGAGGTATATGGC 59.511 52.381 0.0 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.968528 ATAGAGTAGCCCATAGTCTTTCG 57.031 43.478 0.00 0.00 40.66 3.46
126 136 7.308589 GCTGATTGTAACTCTATGTGGTTGTTT 60.309 37.037 0.00 0.00 0.00 2.83
133 143 8.995220 GTAACTCTATGTGGTTGTTTGATACAA 58.005 33.333 0.00 0.00 44.31 2.41
258 271 9.930693 AGAAACTGTTTTTACAAAACCATGTTA 57.069 25.926 7.28 0.00 34.75 2.41
262 275 7.093245 ACTGTTTTTACAAAACCATGTTAGGGT 60.093 33.333 9.12 0.00 41.41 4.34
325 341 4.412060 TCCAAACAACCCCTTATCCAAT 57.588 40.909 0.00 0.00 0.00 3.16
335 351 7.125659 ACAACCCCTTATCCAATCAATTTTAGG 59.874 37.037 0.00 0.00 0.00 2.69
373 408 5.773176 AGAGGAAACCAAACAACCGATTTAT 59.227 36.000 0.00 0.00 0.00 1.40
374 409 6.266786 AGAGGAAACCAAACAACCGATTTATT 59.733 34.615 0.00 0.00 0.00 1.40
440 477 6.911993 TTAGGATCCAAACAACCCCTATTA 57.088 37.500 15.82 0.00 0.00 0.98
497 538 1.305219 ACGTGATTCCCCGCATGTTG 61.305 55.000 0.00 0.00 30.50 3.33
503 544 0.875728 TTCCCCGCATGTTGTTAACG 59.124 50.000 0.26 0.00 0.00 3.18
525 569 1.139455 CCTTATTTTGCCATGGCCCTG 59.861 52.381 33.44 15.48 41.09 4.45
665 709 2.496817 GCAGCCTCCTCGAATCGT 59.503 61.111 1.52 0.00 0.00 3.73
825 876 4.523282 GCCTCCCCCTCCCAGGAT 62.523 72.222 0.00 0.00 37.67 3.24
918 992 1.077445 GCCTTCTTTTCCTGCCCCT 59.923 57.895 0.00 0.00 0.00 4.79
919 993 1.253593 GCCTTCTTTTCCTGCCCCTG 61.254 60.000 0.00 0.00 0.00 4.45
921 995 0.613012 CTTCTTTTCCTGCCCCTGGG 60.613 60.000 5.50 5.50 38.57 4.45
922 996 1.071314 TTCTTTTCCTGCCCCTGGGA 61.071 55.000 16.20 0.00 37.50 4.37
924 998 1.778383 TTTTCCTGCCCCTGGGAGT 60.778 57.895 16.20 0.00 39.62 3.85
952 1026 1.673033 CGCTTGGTTCTCGGTTGATCT 60.673 52.381 0.00 0.00 0.00 2.75
955 1029 3.371285 GCTTGGTTCTCGGTTGATCTTAC 59.629 47.826 0.00 0.00 0.00 2.34
963 1037 4.734917 CTCGGTTGATCTTACGAGTTTCT 58.265 43.478 18.70 0.00 45.48 2.52
964 1038 5.130292 TCGGTTGATCTTACGAGTTTCTT 57.870 39.130 0.00 0.00 0.00 2.52
965 1039 5.159209 TCGGTTGATCTTACGAGTTTCTTC 58.841 41.667 0.00 0.00 0.00 2.87
966 1040 4.326548 CGGTTGATCTTACGAGTTTCTTCC 59.673 45.833 0.00 0.00 0.00 3.46
967 1041 4.326548 GGTTGATCTTACGAGTTTCTTCCG 59.673 45.833 0.00 0.00 0.00 4.30
968 1042 3.508762 TGATCTTACGAGTTTCTTCCGC 58.491 45.455 0.00 0.00 0.00 5.54
1245 1329 7.988737 TGCTCATGGTAATACATCAAGAAAAG 58.011 34.615 0.00 0.00 0.00 2.27
1765 1875 2.356673 GGGTGTCGGTGGAACGTC 60.357 66.667 0.00 0.00 38.12 4.34
2459 2597 2.307686 ACCCTGTATTGTTGGTACCTGG 59.692 50.000 14.36 0.00 0.00 4.45
2526 3497 3.565307 TCAGGAGTTGTTTGGCTTCATT 58.435 40.909 0.00 0.00 0.00 2.57
2575 3546 5.448360 GCAGATGAAGGAGATAACAAAGTGC 60.448 44.000 0.00 0.00 0.00 4.40
2688 3659 1.695893 CGTTTGCCATCGATGACGCT 61.696 55.000 26.86 0.00 39.58 5.07
2996 3967 8.464404 CATTACTTGTTCATGGTTCAGATCAAT 58.536 33.333 0.00 0.00 0.00 2.57
3178 4149 3.967332 AGGCCTGTTCAATTCCAAATG 57.033 42.857 3.11 0.00 0.00 2.32
3372 4343 3.433615 GCAAGCTTGTAGGACTTACACAG 59.566 47.826 26.55 0.83 41.86 3.66
3375 4346 6.220930 CAAGCTTGTAGGACTTACACAGTTA 58.779 40.000 18.65 0.00 41.86 2.24
3379 4350 6.872020 GCTTGTAGGACTTACACAGTTATCAA 59.128 38.462 0.00 0.00 41.86 2.57
3380 4351 7.549488 GCTTGTAGGACTTACACAGTTATCAAT 59.451 37.037 0.00 0.00 41.86 2.57
3381 4352 9.436957 CTTGTAGGACTTACACAGTTATCAATT 57.563 33.333 0.00 0.00 41.86 2.32
3411 4382 7.695480 TCATGTTAAACCTTAGCTTGCAATA 57.305 32.000 0.00 0.00 0.00 1.90
3484 4455 1.215382 CTTGGCGACATCGTGAGGA 59.785 57.895 0.00 0.00 42.32 3.71
3644 4615 7.663827 ACAGATAATCCATGGCATTATGTTTG 58.336 34.615 23.16 19.95 0.00 2.93
3652 4623 6.035843 CCATGGCATTATGTTTGTAGTTCAC 58.964 40.000 0.00 0.00 0.00 3.18
4039 5010 3.855503 CTGGTGGAGCTGCTTGGCA 62.856 63.158 6.82 0.00 36.92 4.92
4044 5015 1.604593 GGAGCTGCTTGGCAAGGAA 60.605 57.895 27.25 3.45 38.41 3.36
4062 5033 2.359850 GCATCGGAGTTGGTGGCA 60.360 61.111 0.00 0.00 0.00 4.92
4170 5141 2.808202 GCTTTTCTCAGACAGTGGCTGA 60.808 50.000 27.03 27.03 39.90 4.26
4319 5299 3.058016 CCACTGTGGTGTTGCATAGAAAG 60.058 47.826 18.76 0.00 41.53 2.62
4320 5300 3.565482 CACTGTGGTGTTGCATAGAAAGT 59.435 43.478 0.00 0.00 38.54 2.66
4321 5301 4.036734 CACTGTGGTGTTGCATAGAAAGTT 59.963 41.667 0.00 0.00 38.54 2.66
4322 5302 5.238432 CACTGTGGTGTTGCATAGAAAGTTA 59.762 40.000 0.00 0.00 38.54 2.24
4323 5303 6.003950 ACTGTGGTGTTGCATAGAAAGTTAT 58.996 36.000 0.00 0.00 0.00 1.89
4324 5304 7.119116 CACTGTGGTGTTGCATAGAAAGTTATA 59.881 37.037 0.00 0.00 38.54 0.98
4325 5305 7.663905 ACTGTGGTGTTGCATAGAAAGTTATAA 59.336 33.333 0.00 0.00 0.00 0.98
4326 5306 8.397575 TGTGGTGTTGCATAGAAAGTTATAAA 57.602 30.769 0.00 0.00 0.00 1.40
4467 5458 4.021981 AGCCCAAAGAAAGTAATGCTCAAC 60.022 41.667 0.00 0.00 0.00 3.18
4511 5510 4.747540 TGTCATTGGATGTTGAACTTCG 57.252 40.909 5.31 0.00 0.00 3.79
4555 5554 0.879400 CATCACTCGATGCAGAGGCC 60.879 60.000 7.77 0.00 42.54 5.19
4648 5654 8.537049 TTTCTTGTGAATAAATGGAAATGCTG 57.463 30.769 0.00 0.00 31.56 4.41
4659 5665 2.297033 TGGAAATGCTGTCAAGGCTTTC 59.703 45.455 0.00 0.00 0.00 2.62
4663 5670 4.677673 AATGCTGTCAAGGCTTTCTTTT 57.322 36.364 0.00 0.00 32.41 2.27
4678 5687 8.650490 AGGCTTTCTTTTTCATATTTGGAGAAA 58.350 29.630 0.00 0.00 32.60 2.52
4749 5764 3.742433 TTTGCAATGGGTTCGAACAAT 57.258 38.095 28.24 18.27 0.00 2.71
4782 6029 2.069273 GGTTCTGACTTGATGTGGTCG 58.931 52.381 0.00 0.00 35.45 4.79
5062 6435 2.492088 TGTGGAGGTGATCTAACTGACG 59.508 50.000 0.00 0.00 0.00 4.35
5114 6487 6.515272 AAATACAGGATCCAAATGTCACAC 57.485 37.500 15.82 0.00 0.00 3.82
5125 6498 7.953005 TCCAAATGTCACACCATTATGTATT 57.047 32.000 0.00 0.00 34.01 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.929836 CAAGCAGTCCGAGCATAGTTC 59.070 52.381 0.00 0.00 0.00 3.01
54 55 5.439721 TCTGAAGCCATATGCAACTAACAT 58.560 37.500 0.00 0.00 44.83 2.71
59 60 5.655532 AGAAAATCTGAAGCCATATGCAACT 59.344 36.000 0.00 0.00 44.83 3.16
221 234 9.291664 TGTAAAAACAGTTTCTTAATCCAAACG 57.708 29.630 0.00 0.00 37.54 3.60
262 275 8.937835 TCATTCAGATCAATGGGTCTAATCTAA 58.062 33.333 6.06 0.00 34.90 2.10
373 408 5.517655 CCCCTTATCCAGTTTGGTTTCCTAA 60.518 44.000 0.00 0.00 39.03 2.69
374 409 4.017867 CCCCTTATCCAGTTTGGTTTCCTA 60.018 45.833 0.00 0.00 39.03 2.94
440 477 6.206829 CGAGAAGGGAGTTTTTATTCCAAACT 59.793 38.462 0.00 0.00 45.28 2.66
480 521 0.887933 AACAACATGCGGGGAATCAC 59.112 50.000 0.00 0.00 0.00 3.06
497 538 5.099575 CCATGGCAAAATAAGGTCGTTAAC 58.900 41.667 0.00 0.00 0.00 2.01
503 544 1.138859 GGGCCATGGCAAAATAAGGTC 59.861 52.381 36.56 15.72 44.11 3.85
525 569 2.901264 CACTCGACGACTCGTAGAAAAC 59.099 50.000 14.25 0.00 40.46 2.43
665 709 5.300539 TGGTGCTTATCTTGTTGTTTTGCTA 59.699 36.000 0.00 0.00 0.00 3.49
825 876 4.052608 TGTAGTTCGCGAACAAGATTCAA 58.947 39.130 42.89 22.03 43.47 2.69
918 992 1.841556 AAGCGAGGTTCCACTCCCA 60.842 57.895 0.00 0.00 33.93 4.37
919 993 1.376037 CAAGCGAGGTTCCACTCCC 60.376 63.158 0.00 0.00 33.93 4.30
921 995 1.371558 ACCAAGCGAGGTTCCACTC 59.628 57.895 0.00 0.00 39.34 3.51
922 996 3.563512 ACCAAGCGAGGTTCCACT 58.436 55.556 0.00 0.00 39.34 4.00
952 1026 0.388907 CCGGCGGAAGAAACTCGTAA 60.389 55.000 24.41 0.00 0.00 3.18
955 1029 2.813908 CCCGGCGGAAGAAACTCG 60.814 66.667 30.79 2.47 0.00 4.18
962 1036 2.032071 AACAGAACCCGGCGGAAG 59.968 61.111 30.79 14.82 0.00 3.46
963 1037 2.031465 GAACAGAACCCGGCGGAA 59.969 61.111 30.79 0.00 0.00 4.30
964 1038 4.367023 CGAACAGAACCCGGCGGA 62.367 66.667 30.79 0.00 0.00 5.54
965 1039 3.659089 ATCGAACAGAACCCGGCGG 62.659 63.158 21.46 21.46 0.00 6.13
966 1040 2.125673 ATCGAACAGAACCCGGCG 60.126 61.111 0.00 0.00 0.00 6.46
967 1041 2.165301 CGATCGAACAGAACCCGGC 61.165 63.158 10.26 0.00 0.00 6.13
968 1042 0.801067 GACGATCGAACAGAACCCGG 60.801 60.000 24.34 0.00 0.00 5.73
1077 1161 4.760047 GTCGCCACGCCATCCAGT 62.760 66.667 0.00 0.00 0.00 4.00
1264 1348 4.260866 GGTTTGTTCGTCCGAGAAATTTGA 60.261 41.667 0.00 0.00 0.00 2.69
1356 1440 4.094590 GCAGAGCCATCAATGCTATCATAC 59.905 45.833 0.00 0.00 39.69 2.39
1709 1819 7.618137 AGAATTTTTACATACGTAGAGTGGGT 58.382 34.615 12.27 2.09 0.00 4.51
1710 1820 7.043590 CGAGAATTTTTACATACGTAGAGTGGG 60.044 40.741 12.27 0.00 0.00 4.61
1765 1875 3.428045 GCAGGCCAGTTATTAAACAGCAG 60.428 47.826 5.01 0.00 38.32 4.24
1906 2016 8.294577 ACTTGAATTATTTTGAAACGGAGGTAC 58.705 33.333 0.00 0.00 0.00 3.34
2086 2212 9.866655 ATTGGCCAAATATATAGAAAAGTCAGA 57.133 29.630 24.71 0.00 0.00 3.27
2170 2296 7.045416 TGAAAGTGTCACTAACTAAGAAGCAA 58.955 34.615 5.77 0.00 0.00 3.91
2459 2597 1.009829 GCCAACGAGACCATCACATC 58.990 55.000 0.00 0.00 0.00 3.06
2535 3506 2.930950 TCTGCAACAAACTTGGCTAGT 58.069 42.857 0.00 0.00 39.32 2.57
2575 3546 2.435586 CCTCTGCTTGCCGTCCAG 60.436 66.667 0.00 0.00 0.00 3.86
2688 3659 3.687212 CCACAAAGCATGGAATACGTACA 59.313 43.478 0.00 0.00 39.87 2.90
2996 3967 1.183030 CCAGTGTCCCTACGGTGTCA 61.183 60.000 0.00 0.00 0.00 3.58
3381 4352 8.405531 GCAAGCTAAGGTTTAACATGAATGATA 58.594 33.333 0.00 0.00 0.00 2.15
3382 4353 7.093814 TGCAAGCTAAGGTTTAACATGAATGAT 60.094 33.333 0.00 0.00 0.00 2.45
3383 4354 6.208402 TGCAAGCTAAGGTTTAACATGAATGA 59.792 34.615 0.00 0.00 0.00 2.57
3384 4355 6.389091 TGCAAGCTAAGGTTTAACATGAATG 58.611 36.000 0.00 0.00 0.00 2.67
3385 4356 6.588719 TGCAAGCTAAGGTTTAACATGAAT 57.411 33.333 0.00 0.00 0.00 2.57
3411 4382 5.650283 TGGAAAGGAAATGAATGTTAGGGT 58.350 37.500 0.00 0.00 0.00 4.34
3484 4455 2.092323 GGCGATTTTAAGAAGCACCCT 58.908 47.619 0.00 0.00 0.00 4.34
3510 4481 8.977505 CGTTTAATGTGACCAAAAATTGAAGAT 58.022 29.630 0.00 0.00 0.00 2.40
3516 4487 5.235401 GGTGCGTTTAATGTGACCAAAAATT 59.765 36.000 0.00 0.00 0.00 1.82
3644 4615 6.425577 TGTTACACAAAACCAGTGAACTAC 57.574 37.500 0.00 0.00 40.16 2.73
3652 4623 6.429692 TCCAGTCATATGTTACACAAAACCAG 59.570 38.462 1.90 0.00 0.00 4.00
3695 4666 2.159128 ACACATGAGAAGAGGAGATGCG 60.159 50.000 0.00 0.00 0.00 4.73
3698 4669 4.092279 TGTCACACATGAGAAGAGGAGAT 58.908 43.478 0.00 0.00 34.75 2.75
4039 5010 0.693049 ACCAACTCCGATGCTTCCTT 59.307 50.000 0.00 0.00 0.00 3.36
4044 5015 2.045926 GCCACCAACTCCGATGCT 60.046 61.111 0.00 0.00 0.00 3.79
4047 5018 1.003355 CACTGCCACCAACTCCGAT 60.003 57.895 0.00 0.00 0.00 4.18
4147 5118 2.158696 AGCCACTGTCTGAGAAAAGCTT 60.159 45.455 0.00 0.00 0.00 3.74
4170 5141 9.561069 ACAAAGAACACTAGAGTCAAATAACAT 57.439 29.630 0.00 0.00 0.00 2.71
4320 5300 9.509956 CCGGATATGTCCTAAATTGGTTTATAA 57.490 33.333 6.95 0.00 42.73 0.98
4321 5301 8.882282 TCCGGATATGTCCTAAATTGGTTTATA 58.118 33.333 0.00 0.00 42.73 0.98
4322 5302 7.751646 TCCGGATATGTCCTAAATTGGTTTAT 58.248 34.615 0.00 0.00 42.73 1.40
4323 5303 7.139287 TCCGGATATGTCCTAAATTGGTTTA 57.861 36.000 0.00 0.00 42.73 2.01
4324 5304 6.008696 TCCGGATATGTCCTAAATTGGTTT 57.991 37.500 0.00 0.00 42.73 3.27
4325 5305 5.640158 TCCGGATATGTCCTAAATTGGTT 57.360 39.130 0.00 0.00 42.73 3.67
4326 5306 5.456186 CCTTCCGGATATGTCCTAAATTGGT 60.456 44.000 4.15 0.00 42.73 3.67
4467 5458 5.950965 ATAAAGTTATCTCGAGTGTTGCG 57.049 39.130 13.13 0.00 0.00 4.85
4511 5510 9.638239 TGCAGACAACCTTTTATTGATTATTTC 57.362 29.630 0.00 0.00 0.00 2.17
4587 5586 4.289245 AGGGCATATTTTGTAGTGGCAAT 58.711 39.130 0.00 0.00 38.72 3.56
4588 5587 3.699038 GAGGGCATATTTTGTAGTGGCAA 59.301 43.478 0.00 0.00 38.72 4.52
4646 5652 8.706035 CAAATATGAAAAAGAAAGCCTTGACAG 58.294 33.333 0.00 0.00 34.79 3.51
4648 5654 7.872483 TCCAAATATGAAAAAGAAAGCCTTGAC 59.128 33.333 0.00 0.00 34.79 3.18
4659 5665 7.656948 TGCCAACTTTCTCCAAATATGAAAAAG 59.343 33.333 0.00 0.00 30.67 2.27
4663 5670 6.662865 TTGCCAACTTTCTCCAAATATGAA 57.337 33.333 0.00 0.00 0.00 2.57
4749 5764 5.223449 AGTCAGAACCAAGAATTCGGTAA 57.777 39.130 5.56 0.00 33.17 2.85
4782 6029 1.488812 TGTGTGGTGGAGGTATATGGC 59.511 52.381 0.00 0.00 0.00 4.40
5025 6391 4.891756 CCTCCACATCATCCAAAAAGCTAT 59.108 41.667 0.00 0.00 0.00 2.97
5062 6435 8.613060 TTATTCATGAACTCCTATGAGAATGC 57.387 34.615 11.07 0.00 41.42 3.56
5102 6475 9.515020 GTAAATACATAATGGTGTGACATTTGG 57.485 33.333 0.00 0.00 41.12 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.