Multiple sequence alignment - TraesCS1D01G123500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G123500 chr1D 100.000 3367 0 0 1 3367 125821567 125824933 0.000000e+00 6218.0
1 TraesCS1D01G123500 chr1D 86.667 75 5 4 3184 3258 155711856 155711787 1.000000e-10 78.7
2 TraesCS1D01G123500 chr1D 82.051 78 8 3 3189 3260 467003872 467003949 1.010000e-05 62.1
3 TraesCS1D01G123500 chr1A 94.952 2932 79 34 16 2917 139552033 139554925 0.000000e+00 4530.0
4 TraesCS1D01G123500 chr1A 91.667 456 22 7 2915 3361 139555101 139555549 4.770000e-173 617.0
5 TraesCS1D01G123500 chr1B 94.804 1886 59 12 1013 2881 189583735 189585598 0.000000e+00 2904.0
6 TraesCS1D01G123500 chr1B 94.093 728 28 6 1 724 189582160 189582876 0.000000e+00 1092.0
7 TraesCS1D01G123500 chr1B 86.797 462 23 18 2915 3367 189596352 189596784 6.530000e-132 481.0
8 TraesCS1D01G123500 chr1B 95.000 200 1 3 748 939 189583154 189583352 4.220000e-79 305.0
9 TraesCS1D01G123500 chr1B 92.814 167 10 1 2750 2914 189586188 189586354 1.210000e-59 241.0
10 TraesCS1D01G123500 chr3B 86.260 131 18 0 1668 1798 106120507 106120637 3.500000e-30 143.0
11 TraesCS1D01G123500 chr4B 87.143 70 8 1 3189 3257 95218803 95218872 1.000000e-10 78.7
12 TraesCS1D01G123500 chr2B 84.211 76 9 3 3181 3256 152179356 152179428 1.680000e-08 71.3
13 TraesCS1D01G123500 chr3D 87.719 57 6 1 3202 3258 455952404 455952349 7.800000e-07 65.8
14 TraesCS1D01G123500 chr7D 82.895 76 7 5 3185 3255 586784171 586784245 2.800000e-06 63.9
15 TraesCS1D01G123500 chr2A 83.333 72 7 2 3189 3256 194716800 194716870 1.010000e-05 62.1
16 TraesCS1D01G123500 chr5A 82.051 78 5 4 3187 3256 510463543 510463467 1.300000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G123500 chr1D 125821567 125824933 3366 False 6218.0 6218 100.00000 1 3367 1 chr1D.!!$F1 3366
1 TraesCS1D01G123500 chr1A 139552033 139555549 3516 False 2573.5 4530 93.30950 16 3361 2 chr1A.!!$F1 3345
2 TraesCS1D01G123500 chr1B 189582160 189586354 4194 False 1135.5 2904 94.17775 1 2914 4 chr1B.!!$F2 2913

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
988 1282 1.010793 AGAGAGAGGGGGAGAGAGAGA 59.989 57.143 0.0 0.0 0.00 3.10 F
1800 2418 0.745845 GGTCTCCTCGCTGGTACGTA 60.746 60.000 0.0 0.0 37.07 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1864 2482 0.511221 GAGCAAAGTTAGCGCAACGA 59.489 50.0 11.47 0.0 42.35 3.85 R
2707 3336 0.647410 CACGAGAAACTATGGCGCTG 59.353 55.0 7.64 0.0 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.655090 TCTTGGGTCAGTTGCATCAA 57.345 45.000 0.00 0.00 0.00 2.57
37 38 4.277672 CAGTTGCATCAAAGGATCTATGGG 59.722 45.833 0.00 0.00 0.00 4.00
38 39 2.867624 TGCATCAAAGGATCTATGGGC 58.132 47.619 0.00 0.00 0.00 5.36
84 85 6.291377 TGCTTGGCTCTTATAATGACCTTAG 58.709 40.000 0.00 0.00 0.00 2.18
125 126 4.527509 TTGTTCAAAAGACTTGTTGCCA 57.472 36.364 0.00 0.00 0.00 4.92
174 175 5.343249 TGTCAATGATCATGAGTACACGAG 58.657 41.667 9.46 0.00 0.00 4.18
189 190 1.341531 CACGAGGGGCTACTATCTTGG 59.658 57.143 0.00 0.00 0.00 3.61
199 200 4.543692 GCTACTATCTTGGCAAATGCATG 58.456 43.478 0.00 0.00 44.36 4.06
224 225 2.416972 GCTCCGTAGAAGAATGGTCGTT 60.417 50.000 0.00 0.00 0.00 3.85
246 247 4.970711 TCCAAAACGGTTAGGAACATGTA 58.029 39.130 11.28 0.00 35.57 2.29
322 327 3.136443 CAGAGGGCATAGGGTGTGATTTA 59.864 47.826 0.00 0.00 0.00 1.40
343 348 2.195567 TGTGTGCTTGGCTGGCTTC 61.196 57.895 2.00 0.00 0.00 3.86
486 491 3.553922 GCTCCTTTACTGCATCGCTAGAT 60.554 47.826 0.00 0.00 37.65 1.98
632 645 1.205055 TCTCCTCCGCTACAGAGAGA 58.795 55.000 0.00 0.00 32.86 3.10
633 646 1.140052 TCTCCTCCGCTACAGAGAGAG 59.860 57.143 0.00 0.00 32.86 3.20
634 647 1.140052 CTCCTCCGCTACAGAGAGAGA 59.860 57.143 0.00 0.00 33.79 3.10
635 648 1.140052 TCCTCCGCTACAGAGAGAGAG 59.860 57.143 0.00 0.00 32.86 3.20
636 649 1.140052 CCTCCGCTACAGAGAGAGAGA 59.860 57.143 0.00 0.00 32.86 3.10
637 650 2.483876 CTCCGCTACAGAGAGAGAGAG 58.516 57.143 0.00 0.00 32.86 3.20
638 651 1.834896 TCCGCTACAGAGAGAGAGAGT 59.165 52.381 0.00 0.00 0.00 3.24
639 652 1.939934 CCGCTACAGAGAGAGAGAGTG 59.060 57.143 0.00 0.00 0.00 3.51
854 1136 4.670727 TCCTCCCTCTATATATAGCTCCCC 59.329 50.000 14.03 0.00 0.00 4.81
980 1274 1.657804 GGTTGAAAGAGAGAGGGGGA 58.342 55.000 0.00 0.00 0.00 4.81
981 1275 1.557371 GGTTGAAAGAGAGAGGGGGAG 59.443 57.143 0.00 0.00 0.00 4.30
982 1276 2.541466 GTTGAAAGAGAGAGGGGGAGA 58.459 52.381 0.00 0.00 0.00 3.71
983 1277 2.499693 GTTGAAAGAGAGAGGGGGAGAG 59.500 54.545 0.00 0.00 0.00 3.20
984 1278 2.003830 TGAAAGAGAGAGGGGGAGAGA 58.996 52.381 0.00 0.00 0.00 3.10
985 1279 2.024464 TGAAAGAGAGAGGGGGAGAGAG 60.024 54.545 0.00 0.00 0.00 3.20
986 1280 1.994399 AAGAGAGAGGGGGAGAGAGA 58.006 55.000 0.00 0.00 0.00 3.10
987 1281 1.522900 AGAGAGAGGGGGAGAGAGAG 58.477 60.000 0.00 0.00 0.00 3.20
988 1282 1.010793 AGAGAGAGGGGGAGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
997 1291 2.370189 GGGGAGAGAGAGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
1011 1614 3.448934 AGAGAGAGAGATGGCTTGGAAA 58.551 45.455 0.00 0.00 0.00 3.13
1243 1850 1.620822 GCTGGAGCAAAGGGAAGAAA 58.379 50.000 0.00 0.00 41.59 2.52
1512 2130 6.139671 ACTGATCCATATTACCTGTCTCTGT 58.860 40.000 0.00 0.00 0.00 3.41
1513 2131 6.266558 ACTGATCCATATTACCTGTCTCTGTC 59.733 42.308 0.00 0.00 0.00 3.51
1514 2132 6.377080 TGATCCATATTACCTGTCTCTGTCT 58.623 40.000 0.00 0.00 0.00 3.41
1515 2133 6.491745 TGATCCATATTACCTGTCTCTGTCTC 59.508 42.308 0.00 0.00 0.00 3.36
1516 2134 6.019656 TCCATATTACCTGTCTCTGTCTCT 57.980 41.667 0.00 0.00 0.00 3.10
1517 2135 5.830457 TCCATATTACCTGTCTCTGTCTCTG 59.170 44.000 0.00 0.00 0.00 3.35
1792 2410 1.684049 CTTCCAGGGTCTCCTCGCT 60.684 63.158 0.00 0.00 42.67 4.93
1800 2418 0.745845 GGTCTCCTCGCTGGTACGTA 60.746 60.000 0.00 0.00 37.07 3.57
1864 2482 3.788766 GCGTGCGCTTTGGTCGAT 61.789 61.111 9.73 0.00 38.26 3.59
1865 2483 2.395690 CGTGCGCTTTGGTCGATC 59.604 61.111 9.73 0.00 0.00 3.69
1866 2484 2.395690 GTGCGCTTTGGTCGATCG 59.604 61.111 9.36 9.36 0.00 3.69
1868 2486 1.666553 TGCGCTTTGGTCGATCGTT 60.667 52.632 15.94 0.00 0.00 3.85
1870 2488 1.225745 CGCTTTGGTCGATCGTTGC 60.226 57.895 15.94 10.13 0.00 4.17
2130 2750 6.908870 AAACAAACAAATTTCTCCTCTTGC 57.091 33.333 0.00 0.00 0.00 4.01
2386 3011 5.594317 GCTGAGCCATTTATTTAGGGAGAAA 59.406 40.000 0.00 0.00 0.00 2.52
2387 3012 6.266330 GCTGAGCCATTTATTTAGGGAGAAAT 59.734 38.462 0.00 0.00 33.60 2.17
2388 3013 7.587037 TGAGCCATTTATTTAGGGAGAAATG 57.413 36.000 0.00 0.00 38.46 2.32
2401 3028 2.274437 GAGAAATGCATGTCGCTCTCA 58.726 47.619 12.92 0.00 38.63 3.27
2418 3045 5.500931 CGCTCTCAATCGGAATGTTTTCTAC 60.501 44.000 0.00 0.00 32.16 2.59
2477 3104 6.110411 TCTGTATAAATTTCCCGGATCTCC 57.890 41.667 0.73 0.00 0.00 3.71
2540 3167 3.012518 ACTTGCACTGTTAGGATCATGC 58.987 45.455 0.00 0.00 0.00 4.06
2707 3336 3.953612 TCAACTGGGTTATCATGAATGCC 59.046 43.478 0.00 1.69 0.00 4.40
2804 3433 1.228706 TGGATCCCTGCGCCAAAAA 60.229 52.632 9.90 0.00 0.00 1.94
2847 3476 8.088365 ACTCCCAAATAAGGATTTTCTTTTTCG 58.912 33.333 0.00 0.00 32.73 3.46
2939 4469 7.042950 GGAAAGAGAATGGACTAGTTTCCTAC 58.957 42.308 0.00 0.00 38.58 3.18
2950 4482 5.567430 ACTAGTTTCCTACAAACATTCCCC 58.433 41.667 0.00 0.00 32.81 4.81
2969 4501 8.897752 CATTCCCCTTTTCTACAAATTCTAGAG 58.102 37.037 0.00 0.00 0.00 2.43
2970 4502 7.808279 TCCCCTTTTCTACAAATTCTAGAGA 57.192 36.000 0.00 0.00 0.00 3.10
2971 4503 8.214721 TCCCCTTTTCTACAAATTCTAGAGAA 57.785 34.615 0.00 0.00 38.56 2.87
2972 4504 8.836735 TCCCCTTTTCTACAAATTCTAGAGAAT 58.163 33.333 0.00 0.00 45.91 2.40
3020 4559 1.513586 GTCCGAGGCAACGTAGTCG 60.514 63.158 0.00 0.00 45.00 4.18
3073 4612 3.768757 TCATGCCAAATTCCCCTTTACAG 59.231 43.478 0.00 0.00 0.00 2.74
3146 4685 6.838401 AGGATTTTATGGGACTCAATCTCT 57.162 37.500 0.00 0.00 0.00 3.10
3164 4703 8.424918 TCAATCTCTTACATGAATCTAAGGGAC 58.575 37.037 0.00 0.00 33.26 4.46
3170 4709 1.789523 TGAATCTAAGGGACCGGGAG 58.210 55.000 6.32 0.00 0.00 4.30
3251 4790 8.487028 ACACTCTTATATTTCTTTACAGAGGGG 58.513 37.037 0.00 0.00 35.07 4.79
3260 4799 5.237236 TCTTTACAGAGGGGGTACTTTTG 57.763 43.478 0.00 0.00 0.00 2.44
3267 4806 2.241430 GAGGGGGTACTTTTGTGGCTAT 59.759 50.000 0.00 0.00 0.00 2.97
3269 4808 3.458487 AGGGGGTACTTTTGTGGCTATAG 59.542 47.826 0.00 0.00 0.00 1.31
3278 4817 5.652452 ACTTTTGTGGCTATAGGAATGGAAC 59.348 40.000 1.04 0.00 0.00 3.62
3346 4885 5.215252 GCAACCAAGCCTATACTATGAGA 57.785 43.478 0.00 0.00 0.00 3.27
3363 4902 8.532186 ACTATGAGATTCTTCTTTCTAGCTGA 57.468 34.615 0.00 0.00 30.30 4.26
3364 4903 8.976353 ACTATGAGATTCTTCTTTCTAGCTGAA 58.024 33.333 0.00 0.00 30.30 3.02
3365 4904 9.467258 CTATGAGATTCTTCTTTCTAGCTGAAG 57.533 37.037 0.00 0.00 38.69 3.02
3366 4905 7.473735 TGAGATTCTTCTTTCTAGCTGAAGA 57.526 36.000 8.87 8.87 42.74 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.350833 AGATCCTTTGATGCAACTGACC 58.649 45.455 0.00 0.00 0.00 4.02
25 26 1.570501 TGCCAAAGCCCATAGATCCTT 59.429 47.619 0.00 0.00 38.69 3.36
37 38 2.760092 TCCAAGGTATGAATGCCAAAGC 59.240 45.455 0.06 0.00 34.71 3.51
38 39 5.353938 CAATCCAAGGTATGAATGCCAAAG 58.646 41.667 0.06 0.00 34.71 2.77
84 85 9.010029 TGAACAATGGTTATCTCTAAAGGAAAC 57.990 33.333 0.00 0.00 37.36 2.78
125 126 2.305343 AGTTGCAAGATGGAGCTTCTCT 59.695 45.455 0.00 0.00 0.00 3.10
174 175 2.729028 TTTGCCAAGATAGTAGCCCC 57.271 50.000 0.00 0.00 0.00 5.80
199 200 4.299978 GACCATTCTTCTACGGAGCATAC 58.700 47.826 0.00 0.00 0.00 2.39
224 225 3.822940 ACATGTTCCTAACCGTTTTGGA 58.177 40.909 0.00 0.00 42.00 3.53
266 271 9.251792 CTCTCTCATCTTCAATTCTTGTCATAG 57.748 37.037 0.00 0.00 0.00 2.23
286 291 0.468029 CCTCTGCCCCTCTCTCTCTC 60.468 65.000 0.00 0.00 0.00 3.20
287 292 1.620259 CCTCTGCCCCTCTCTCTCT 59.380 63.158 0.00 0.00 0.00 3.10
310 315 2.819608 GCACACACATAAATCACACCCT 59.180 45.455 0.00 0.00 0.00 4.34
322 327 2.567497 GCCAGCCAAGCACACACAT 61.567 57.895 0.00 0.00 0.00 3.21
486 491 2.870435 GCGTTGCCTTTTCCACTCTCTA 60.870 50.000 0.00 0.00 0.00 2.43
632 645 2.360483 CTCTCACACACACACACTCTCT 59.640 50.000 0.00 0.00 0.00 3.10
633 646 2.359214 TCTCTCACACACACACACTCTC 59.641 50.000 0.00 0.00 0.00 3.20
634 647 2.360483 CTCTCTCACACACACACACTCT 59.640 50.000 0.00 0.00 0.00 3.24
635 648 2.544694 CCTCTCTCACACACACACACTC 60.545 54.545 0.00 0.00 0.00 3.51
636 649 1.410517 CCTCTCTCACACACACACACT 59.589 52.381 0.00 0.00 0.00 3.55
637 650 1.539065 CCCTCTCTCACACACACACAC 60.539 57.143 0.00 0.00 0.00 3.82
638 651 0.752658 CCCTCTCTCACACACACACA 59.247 55.000 0.00 0.00 0.00 3.72
639 652 0.034059 CCCCTCTCTCACACACACAC 59.966 60.000 0.00 0.00 0.00 3.82
854 1136 1.471684 GTCTGAAGCAGCAGGAAATGG 59.528 52.381 0.00 0.00 36.55 3.16
980 1274 4.592351 CCATCTCTCTCTCTCTCTCTCTCT 59.408 50.000 0.00 0.00 0.00 3.10
981 1275 4.802248 GCCATCTCTCTCTCTCTCTCTCTC 60.802 54.167 0.00 0.00 0.00 3.20
982 1276 3.072184 GCCATCTCTCTCTCTCTCTCTCT 59.928 52.174 0.00 0.00 0.00 3.10
983 1277 3.072184 AGCCATCTCTCTCTCTCTCTCTC 59.928 52.174 0.00 0.00 0.00 3.20
984 1278 3.051581 AGCCATCTCTCTCTCTCTCTCT 58.948 50.000 0.00 0.00 0.00 3.10
985 1279 3.498774 AGCCATCTCTCTCTCTCTCTC 57.501 52.381 0.00 0.00 0.00 3.20
986 1280 3.559069 CAAGCCATCTCTCTCTCTCTCT 58.441 50.000 0.00 0.00 0.00 3.10
987 1281 2.624838 CCAAGCCATCTCTCTCTCTCTC 59.375 54.545 0.00 0.00 0.00 3.20
988 1282 2.244510 TCCAAGCCATCTCTCTCTCTCT 59.755 50.000 0.00 0.00 0.00 3.10
997 1291 1.756430 GACCCTTTCCAAGCCATCTC 58.244 55.000 0.00 0.00 0.00 2.75
1011 1614 1.007238 TCTTCCTCATCCTTCGACCCT 59.993 52.381 0.00 0.00 0.00 4.34
1166 1773 2.354821 GCCTGAGACGAACAACAAAAGT 59.645 45.455 0.00 0.00 0.00 2.66
1426 2041 8.316497 TCTCCACTAGTACTAGTACATACAGT 57.684 38.462 30.34 22.68 43.98 3.55
1433 2048 5.374921 TGGCATCTCCACTAGTACTAGTAC 58.625 45.833 30.34 23.03 43.98 2.73
1437 2052 4.039245 GCATTGGCATCTCCACTAGTACTA 59.961 45.833 1.89 1.89 46.55 1.82
1438 2053 3.181461 GCATTGGCATCTCCACTAGTACT 60.181 47.826 0.00 0.00 46.55 2.73
1439 2054 3.134458 GCATTGGCATCTCCACTAGTAC 58.866 50.000 0.00 0.00 46.55 2.73
1460 2075 6.176975 TCTTAATTATGTTCCACTTGCACG 57.823 37.500 0.00 0.00 0.00 5.34
1512 2130 0.601046 CCTGCTGCACGTTTCAGAGA 60.601 55.000 16.33 3.59 33.54 3.10
1513 2131 1.864862 CCTGCTGCACGTTTCAGAG 59.135 57.895 16.33 10.89 33.54 3.35
1514 2132 2.253758 GCCTGCTGCACGTTTCAGA 61.254 57.895 16.33 3.68 40.77 3.27
1515 2133 2.253452 GCCTGCTGCACGTTTCAG 59.747 61.111 0.00 9.57 40.77 3.02
1516 2134 3.286751 GGCCTGCTGCACGTTTCA 61.287 61.111 0.00 0.00 43.89 2.69
1517 2135 4.389576 CGGCCTGCTGCACGTTTC 62.390 66.667 0.00 0.00 43.89 2.78
1655 2273 1.077501 GGCCCTTGTAGATGCTGCA 60.078 57.895 4.13 4.13 0.00 4.41
1783 2401 0.036105 TGTACGTACCAGCGAGGAGA 60.036 55.000 22.43 0.00 41.22 3.71
1800 2418 1.444119 AAGTGCCGATTTGCGTGTGT 61.444 50.000 0.00 0.00 38.67 3.72
1864 2482 0.511221 GAGCAAAGTTAGCGCAACGA 59.489 50.000 11.47 0.00 42.35 3.85
1865 2483 0.512952 AGAGCAAAGTTAGCGCAACG 59.487 50.000 11.47 1.33 42.35 4.10
1866 2484 1.264288 ACAGAGCAAAGTTAGCGCAAC 59.736 47.619 11.47 12.33 37.41 4.17
1868 2486 1.148310 GACAGAGCAAAGTTAGCGCA 58.852 50.000 11.47 0.00 37.01 6.09
1870 2488 0.716108 CGGACAGAGCAAAGTTAGCG 59.284 55.000 0.00 0.00 37.01 4.26
2130 2750 3.808116 TCGTCGTCAGTAAGTTCAGAG 57.192 47.619 0.00 0.00 0.00 3.35
2255 2880 5.181811 TCAAGTATGTGGAGAAAGCATGTTG 59.818 40.000 0.00 0.00 0.00 3.33
2258 2883 5.675575 GCTTCAAGTATGTGGAGAAAGCATG 60.676 44.000 0.00 0.00 0.00 4.06
2388 3013 0.528466 TCCGATTGAGAGCGACATGC 60.528 55.000 0.00 0.00 46.98 4.06
2401 3028 6.911250 AAAAGGGTAGAAAACATTCCGATT 57.089 33.333 0.00 0.00 0.00 3.34
2418 3045 3.127721 GTCTAGCTAGCTTGCAAAAAGGG 59.872 47.826 24.88 4.26 34.99 3.95
2477 3104 3.103447 ACATGACACGATGATAGCCAG 57.897 47.619 0.00 0.00 0.00 4.85
2540 3167 4.098055 AGTTACGACACTGCACTAGATG 57.902 45.455 0.00 0.00 0.00 2.90
2707 3336 0.647410 CACGAGAAACTATGGCGCTG 59.353 55.000 7.64 0.00 0.00 5.18
2825 3454 7.330946 GGGTCGAAAAAGAAAATCCTTATTTGG 59.669 37.037 0.00 0.00 35.46 3.28
2829 3458 6.719829 ACAGGGTCGAAAAAGAAAATCCTTAT 59.280 34.615 0.00 0.00 0.00 1.73
2847 3476 2.930826 TGACTTCCTTTCACAGGGTC 57.069 50.000 0.00 0.00 44.12 4.46
2891 4241 7.270047 TCCCTATAAAATTCCTGTAGAACGTG 58.730 38.462 0.00 0.00 37.29 4.49
2939 4469 8.150296 AGAATTTGTAGAAAAGGGGAATGTTTG 58.850 33.333 0.00 0.00 0.00 2.93
2969 4501 5.459110 TTGATACCTCGCGTTTTGTATTC 57.541 39.130 5.77 4.83 0.00 1.75
2970 4502 5.866335 TTTGATACCTCGCGTTTTGTATT 57.134 34.783 5.77 0.00 0.00 1.89
2971 4503 5.866335 TTTTGATACCTCGCGTTTTGTAT 57.134 34.783 5.77 8.97 0.00 2.29
2972 4504 5.866335 ATTTTGATACCTCGCGTTTTGTA 57.134 34.783 5.77 4.15 0.00 2.41
3092 4631 7.551262 AGTTTTGAGTTTAAATGGGGTTGAAAC 59.449 33.333 0.00 0.00 0.00 2.78
3143 4682 5.509840 CCGGTCCCTTAGATTCATGTAAGAG 60.510 48.000 5.48 0.00 36.15 2.85
3146 4685 3.389983 CCCGGTCCCTTAGATTCATGTAA 59.610 47.826 0.00 0.00 0.00 2.41
3164 4703 8.996271 GTATTATTGTAGTTTAAATCCTCCCGG 58.004 37.037 0.00 0.00 0.00 5.73
3228 4767 8.035448 ACCCCCTCTGTAAAGAAATATAAGAG 57.965 38.462 0.00 0.00 0.00 2.85
3251 4790 5.531287 CCATTCCTATAGCCACAAAAGTACC 59.469 44.000 0.00 0.00 0.00 3.34
3260 4799 6.513393 CGAAATTGTTCCATTCCTATAGCCAC 60.513 42.308 0.00 0.00 0.00 5.01
3267 4806 9.116067 CCTTTATACGAAATTGTTCCATTCCTA 57.884 33.333 0.00 0.00 0.00 2.94
3269 4808 7.992008 TCCTTTATACGAAATTGTTCCATTCC 58.008 34.615 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.