Multiple sequence alignment - TraesCS1D01G122300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G122300 chr1D 100.000 2543 0 0 1 2543 122857410 122854868 0 4697
1 TraesCS1D01G122300 chr1D 94.407 894 49 1 1 894 426863315 426862423 0 1373
2 TraesCS1D01G122300 chr1D 94.413 895 44 5 1 894 85137373 85136484 0 1371
3 TraesCS1D01G122300 chr1D 93.862 896 48 4 1 894 127778987 127778097 0 1343
4 TraesCS1D01G122300 chr1D 93.855 895 48 3 1 894 85131387 85130499 0 1341
5 TraesCS1D01G122300 chr1D 95.853 434 17 1 2110 2543 122845179 122844747 0 701
6 TraesCS1D01G122300 chr1D 95.862 435 15 3 2110 2543 285537431 285537863 0 701
7 TraesCS1D01G122300 chr1B 93.283 1191 67 9 931 2111 187184259 187185446 0 1744
8 TraesCS1D01G122300 chr1B 86.425 1105 133 7 989 2084 89442124 89441028 0 1194
9 TraesCS1D01G122300 chr7D 94.196 896 46 5 1 894 505882975 505883866 0 1362
10 TraesCS1D01G122300 chr7D 93.645 897 52 4 1 894 51615332 51614438 0 1336
11 TraesCS1D01G122300 chr7D 85.453 1148 148 13 977 2113 54567715 54566576 0 1177
12 TraesCS1D01G122300 chr7D 96.074 433 14 3 2111 2543 340639064 340638635 0 702
13 TraesCS1D01G122300 chr4D 94.276 891 46 3 4 894 297822138 297821253 0 1358
14 TraesCS1D01G122300 chr4D 93.896 901 45 5 1 894 180069375 180068478 0 1351
15 TraesCS1D01G122300 chr4D 95.853 434 16 2 2110 2543 40058670 40058239 0 701
16 TraesCS1D01G122300 chr5D 93.960 894 49 4 1 894 206053586 206054474 0 1347
17 TraesCS1D01G122300 chr5D 96.536 433 13 2 2111 2543 396896035 396895605 0 715
18 TraesCS1D01G122300 chrUn 86.312 1147 136 13 977 2113 75465866 75467001 0 1229
19 TraesCS1D01G122300 chrUn 96.774 434 14 0 2110 2543 94083050 94082617 0 725
20 TraesCS1D01G122300 chr2D 86.312 1147 136 13 977 2113 121215317 121214182 0 1229
21 TraesCS1D01G122300 chr2D 96.083 434 14 2 2110 2543 609727529 609727959 0 704
22 TraesCS1D01G122300 chr7A 86.020 1123 139 12 1001 2113 450570146 450569032 0 1188
23 TraesCS1D01G122300 chr3B 85.764 1145 136 19 977 2109 62881698 62880569 0 1186
24 TraesCS1D01G122300 chr3B 86.207 1102 136 6 989 2081 795969089 795970183 0 1179
25 TraesCS1D01G122300 chr7B 85.615 1147 144 14 977 2113 515067650 515068785 0 1184
26 TraesCS1D01G122300 chr3D 96.520 431 13 2 2113 2543 167814298 167813870 0 712
27 TraesCS1D01G122300 chr3D 95.862 435 15 3 2110 2543 225907246 225907678 0 701


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G122300 chr1D 122854868 122857410 2542 True 4697 4697 100.000 1 2543 1 chr1D.!!$R4 2542
1 TraesCS1D01G122300 chr1D 426862423 426863315 892 True 1373 1373 94.407 1 894 1 chr1D.!!$R6 893
2 TraesCS1D01G122300 chr1D 85136484 85137373 889 True 1371 1371 94.413 1 894 1 chr1D.!!$R2 893
3 TraesCS1D01G122300 chr1D 127778097 127778987 890 True 1343 1343 93.862 1 894 1 chr1D.!!$R5 893
4 TraesCS1D01G122300 chr1D 85130499 85131387 888 True 1341 1341 93.855 1 894 1 chr1D.!!$R1 893
5 TraesCS1D01G122300 chr1B 187184259 187185446 1187 False 1744 1744 93.283 931 2111 1 chr1B.!!$F1 1180
6 TraesCS1D01G122300 chr1B 89441028 89442124 1096 True 1194 1194 86.425 989 2084 1 chr1B.!!$R1 1095
7 TraesCS1D01G122300 chr7D 505882975 505883866 891 False 1362 1362 94.196 1 894 1 chr7D.!!$F1 893
8 TraesCS1D01G122300 chr7D 51614438 51615332 894 True 1336 1336 93.645 1 894 1 chr7D.!!$R1 893
9 TraesCS1D01G122300 chr7D 54566576 54567715 1139 True 1177 1177 85.453 977 2113 1 chr7D.!!$R2 1136
10 TraesCS1D01G122300 chr4D 297821253 297822138 885 True 1358 1358 94.276 4 894 1 chr4D.!!$R3 890
11 TraesCS1D01G122300 chr4D 180068478 180069375 897 True 1351 1351 93.896 1 894 1 chr4D.!!$R2 893
12 TraesCS1D01G122300 chr5D 206053586 206054474 888 False 1347 1347 93.960 1 894 1 chr5D.!!$F1 893
13 TraesCS1D01G122300 chrUn 75465866 75467001 1135 False 1229 1229 86.312 977 2113 1 chrUn.!!$F1 1136
14 TraesCS1D01G122300 chr2D 121214182 121215317 1135 True 1229 1229 86.312 977 2113 1 chr2D.!!$R1 1136
15 TraesCS1D01G122300 chr7A 450569032 450570146 1114 True 1188 1188 86.020 1001 2113 1 chr7A.!!$R1 1112
16 TraesCS1D01G122300 chr3B 62880569 62881698 1129 True 1186 1186 85.764 977 2109 1 chr3B.!!$R1 1132
17 TraesCS1D01G122300 chr3B 795969089 795970183 1094 False 1179 1179 86.207 989 2081 1 chr3B.!!$F1 1092
18 TraesCS1D01G122300 chr7B 515067650 515068785 1135 False 1184 1184 85.615 977 2113 1 chr7B.!!$F1 1136

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
957 973 0.179181 CGTGTGCTGCTAATGCCAAG 60.179 55.0 0.0 0.0 38.71 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2403 2434 0.035881 CCCTGCATCGGTAGCATCAT 59.964 55.0 0.0 0.0 41.82 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 7.493971 CCATAGGACAAAACAGATCTACTCAAG 59.506 40.741 0.00 0.00 0.00 3.02
160 161 1.648116 TACAGCGGGTAAAAGAGGGT 58.352 50.000 0.00 0.00 0.00 4.34
166 167 2.745821 GCGGGTAAAAGAGGGTTTACAG 59.254 50.000 9.36 4.85 43.04 2.74
169 170 3.405831 GGTAAAAGAGGGTTTACAGCGT 58.594 45.455 9.36 0.00 43.04 5.07
214 216 1.798813 GATGACGGTGGTGAAGTTGTC 59.201 52.381 0.00 0.00 0.00 3.18
506 518 2.079170 TGGGCTGAAATTTGGACACA 57.921 45.000 0.00 0.00 0.00 3.72
515 527 8.567104 GGCTGAAATTTGGACACAATTTTTATT 58.433 29.630 0.00 0.00 39.14 1.40
541 553 1.153353 TTGGCTTTCTTACGGCGAAG 58.847 50.000 16.62 13.16 0.00 3.79
748 763 5.905480 ATGGATTTTCTGCGAAACAAAAC 57.095 34.783 3.71 0.00 0.00 2.43
796 811 4.460263 TGGGCACTGGATCAATATGTTAC 58.540 43.478 0.00 0.00 0.00 2.50
800 816 5.455326 GGCACTGGATCAATATGTTACTCCT 60.455 44.000 0.00 0.00 0.00 3.69
904 920 3.865745 GGAGACGTATCATTGTGTTCTGG 59.134 47.826 12.92 0.00 0.00 3.86
905 921 4.495422 GAGACGTATCATTGTGTTCTGGT 58.505 43.478 5.07 0.00 0.00 4.00
906 922 4.495422 AGACGTATCATTGTGTTCTGGTC 58.505 43.478 0.00 0.00 0.00 4.02
907 923 4.021456 AGACGTATCATTGTGTTCTGGTCA 60.021 41.667 0.00 0.00 0.00 4.02
908 924 4.832248 ACGTATCATTGTGTTCTGGTCAT 58.168 39.130 0.00 0.00 0.00 3.06
909 925 4.631377 ACGTATCATTGTGTTCTGGTCATG 59.369 41.667 0.00 0.00 0.00 3.07
910 926 4.631377 CGTATCATTGTGTTCTGGTCATGT 59.369 41.667 0.00 0.00 0.00 3.21
911 927 5.446340 CGTATCATTGTGTTCTGGTCATGTG 60.446 44.000 0.00 0.00 0.00 3.21
912 928 3.819368 TCATTGTGTTCTGGTCATGTGT 58.181 40.909 0.00 0.00 0.00 3.72
913 929 4.967036 TCATTGTGTTCTGGTCATGTGTA 58.033 39.130 0.00 0.00 0.00 2.90
914 930 4.996758 TCATTGTGTTCTGGTCATGTGTAG 59.003 41.667 0.00 0.00 0.00 2.74
915 931 4.681074 TTGTGTTCTGGTCATGTGTAGA 57.319 40.909 0.00 0.00 0.00 2.59
916 932 4.890158 TGTGTTCTGGTCATGTGTAGAT 57.110 40.909 0.00 0.00 0.00 1.98
917 933 5.227569 TGTGTTCTGGTCATGTGTAGATT 57.772 39.130 0.00 0.00 0.00 2.40
918 934 5.620206 TGTGTTCTGGTCATGTGTAGATTT 58.380 37.500 0.00 0.00 0.00 2.17
919 935 6.764379 TGTGTTCTGGTCATGTGTAGATTTA 58.236 36.000 0.00 0.00 0.00 1.40
920 936 7.220740 TGTGTTCTGGTCATGTGTAGATTTAA 58.779 34.615 0.00 0.00 0.00 1.52
921 937 7.882791 TGTGTTCTGGTCATGTGTAGATTTAAT 59.117 33.333 0.00 0.00 0.00 1.40
922 938 9.378551 GTGTTCTGGTCATGTGTAGATTTAATA 57.621 33.333 0.00 0.00 0.00 0.98
923 939 9.599866 TGTTCTGGTCATGTGTAGATTTAATAG 57.400 33.333 0.00 0.00 0.00 1.73
924 940 9.601217 GTTCTGGTCATGTGTAGATTTAATAGT 57.399 33.333 0.00 0.00 0.00 2.12
925 941 9.599866 TTCTGGTCATGTGTAGATTTAATAGTG 57.400 33.333 0.00 0.00 0.00 2.74
926 942 8.977412 TCTGGTCATGTGTAGATTTAATAGTGA 58.023 33.333 0.00 0.00 0.00 3.41
927 943 9.599866 CTGGTCATGTGTAGATTTAATAGTGAA 57.400 33.333 0.00 0.00 0.00 3.18
928 944 9.952030 TGGTCATGTGTAGATTTAATAGTGAAA 57.048 29.630 0.00 0.00 0.00 2.69
953 969 2.159531 TGATTTCGTGTGCTGCTAATGC 60.160 45.455 0.00 0.00 40.20 3.56
957 973 0.179181 CGTGTGCTGCTAATGCCAAG 60.179 55.000 0.00 0.00 38.71 3.61
1146 1168 4.379918 GCACCAAAGAGTTTAGGATGCTTC 60.380 45.833 0.00 0.00 0.00 3.86
1277 1299 5.009911 TCCATGATTTATGTGCTATGTTGCC 59.990 40.000 0.00 0.00 34.87 4.52
1301 1323 1.748493 GAAGTGTGGCTTGGTTGACAA 59.252 47.619 0.00 0.00 37.59 3.18
1323 1345 9.973450 GACAACATATATGTGACTGTAGAAGAT 57.027 33.333 18.94 0.00 41.61 2.40
1331 1353 6.665992 TGTGACTGTAGAAGATAAGGTTGT 57.334 37.500 0.00 0.00 0.00 3.32
1357 1379 6.240549 TGTTTTTATTGGTGGTTGGACATT 57.759 33.333 0.00 0.00 0.00 2.71
1379 1401 3.582647 TGTCTTAAGATGAGGTTGCTCCA 59.417 43.478 8.75 0.00 39.02 3.86
1398 1420 1.135689 CATGGCACTTACAAGCGTTCC 60.136 52.381 0.00 0.00 0.00 3.62
1485 1511 3.493767 ATAAAGCTTCCGGATCCTTCC 57.506 47.619 4.15 0.00 38.81 3.46
1515 1542 6.493166 ACCTCCAGATGATTACAAATGGAAA 58.507 36.000 0.00 0.00 41.12 3.13
1516 1543 6.604795 ACCTCCAGATGATTACAAATGGAAAG 59.395 38.462 0.00 0.00 41.12 2.62
1517 1544 6.604795 CCTCCAGATGATTACAAATGGAAAGT 59.395 38.462 0.00 0.00 41.12 2.66
1519 1546 6.377996 TCCAGATGATTACAAATGGAAAGTGG 59.622 38.462 0.00 0.00 39.81 4.00
1544 1572 2.338577 ATGCATTGGGAGCACTAGAC 57.661 50.000 0.00 0.00 45.95 2.59
1589 1617 2.747855 CCGGCTGACCAAGGAAGC 60.748 66.667 0.00 9.17 34.57 3.86
1692 1721 1.211456 CTGGGAGGGATCTGCTTCTT 58.789 55.000 0.00 0.00 0.00 2.52
1707 1736 5.717178 TCTGCTTCTTACTCCAGAGTATTGT 59.283 40.000 8.29 0.00 42.83 2.71
1751 1780 5.295787 TCGTCAAGATGCATTTGTTATACCC 59.704 40.000 0.00 0.00 0.00 3.69
1782 1811 5.757886 TGACTAGTTTTTCTTGGCATTTCG 58.242 37.500 0.00 0.00 32.40 3.46
1839 1868 8.664669 ACTTTAATTGGTCAACCATAGGAAAT 57.335 30.769 2.03 0.00 46.97 2.17
1892 1922 2.049372 ACTTGGCTTTTGGCTCCATTT 58.951 42.857 0.00 0.00 46.20 2.32
2091 2122 4.644685 ACCAGGTAACAAATGTCCATATGC 59.355 41.667 0.00 0.00 41.41 3.14
2111 2142 9.563898 CATATGCTGTTAAATAACATATGGCTG 57.436 33.333 7.80 0.00 44.34 4.85
2112 2143 7.587037 ATGCTGTTAAATAACATATGGCTGT 57.413 32.000 7.80 0.00 44.34 4.40
2114 2145 7.257003 TGCTGTTAAATAACATATGGCTGTTG 58.743 34.615 7.80 0.00 44.34 3.33
2115 2146 6.697019 GCTGTTAAATAACATATGGCTGTTGG 59.303 38.462 7.80 0.00 44.34 3.77
2116 2147 7.106439 TGTTAAATAACATATGGCTGTTGGG 57.894 36.000 7.80 0.00 40.93 4.12
2117 2148 6.097554 TGTTAAATAACATATGGCTGTTGGGG 59.902 38.462 7.80 0.00 40.93 4.96
2118 2149 4.534647 AATAACATATGGCTGTTGGGGA 57.465 40.909 7.80 0.00 39.60 4.81
2119 2150 2.917713 AACATATGGCTGTTGGGGAA 57.082 45.000 7.80 0.00 37.93 3.97
2120 2151 2.143876 ACATATGGCTGTTGGGGAAC 57.856 50.000 7.80 0.00 0.00 3.62
2121 2152 1.024271 CATATGGCTGTTGGGGAACG 58.976 55.000 0.00 0.00 0.00 3.95
2122 2153 0.623723 ATATGGCTGTTGGGGAACGT 59.376 50.000 0.00 0.00 0.00 3.99
2123 2154 1.277579 TATGGCTGTTGGGGAACGTA 58.722 50.000 0.00 0.00 0.00 3.57
2124 2155 0.035439 ATGGCTGTTGGGGAACGTAG 60.035 55.000 0.00 0.00 0.00 3.51
2126 2157 0.609662 GGCTGTTGGGGAACGTAGTA 59.390 55.000 0.00 0.00 45.00 1.82
2127 2158 1.002315 GGCTGTTGGGGAACGTAGTAA 59.998 52.381 0.00 0.00 45.00 2.24
2128 2159 2.355412 GGCTGTTGGGGAACGTAGTAAT 60.355 50.000 0.00 0.00 45.00 1.89
2129 2160 3.340928 GCTGTTGGGGAACGTAGTAATT 58.659 45.455 0.00 0.00 45.00 1.40
2130 2161 3.754850 GCTGTTGGGGAACGTAGTAATTT 59.245 43.478 0.00 0.00 45.00 1.82
2131 2162 4.142752 GCTGTTGGGGAACGTAGTAATTTC 60.143 45.833 0.00 0.00 45.00 2.17
2132 2163 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
2133 2164 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
2134 2165 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
2135 2166 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
2136 2167 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
2153 2184 2.325509 AAAAATTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
2154 2185 1.231221 AAAATTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
2155 2186 1.231221 AAATTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
2156 2187 0.796312 AATTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
2157 2188 0.037697 ATTCCTACGCACACGCAAGA 60.038 50.000 0.00 0.00 45.53 3.02
2158 2189 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
2159 2190 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
2160 2191 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
2161 2192 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
2162 2193 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
2163 2194 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
2164 2195 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
2165 2196 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
2166 2197 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
2167 2198 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
2168 2199 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
2169 2200 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
2170 2201 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
2171 2202 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
2172 2203 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
2173 2204 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
2174 2205 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
2175 2206 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
2176 2207 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
2177 2208 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
2178 2209 3.002038 TCATGGTGATGCATAGCAACA 57.998 42.857 8.42 8.42 45.07 3.33
2179 2210 3.354467 TCATGGTGATGCATAGCAACAA 58.646 40.909 9.90 0.00 44.04 2.83
2180 2211 3.762823 TCATGGTGATGCATAGCAACAAA 59.237 39.130 9.90 0.11 44.04 2.83
2181 2212 4.220163 TCATGGTGATGCATAGCAACAAAA 59.780 37.500 9.90 0.00 44.04 2.44
2182 2213 4.177165 TGGTGATGCATAGCAACAAAAG 57.823 40.909 0.00 0.00 42.49 2.27
2183 2214 3.056678 TGGTGATGCATAGCAACAAAAGG 60.057 43.478 0.00 0.00 42.49 3.11
2184 2215 3.514645 GTGATGCATAGCAACAAAAGGG 58.485 45.455 0.00 0.00 42.49 3.95
2185 2216 2.496871 TGATGCATAGCAACAAAAGGGG 59.503 45.455 0.00 0.00 43.62 4.79
2186 2217 2.300956 TGCATAGCAACAAAAGGGGA 57.699 45.000 0.00 0.00 34.76 4.81
2187 2218 2.170166 TGCATAGCAACAAAAGGGGAG 58.830 47.619 0.00 0.00 34.76 4.30
2188 2219 2.224992 TGCATAGCAACAAAAGGGGAGA 60.225 45.455 0.00 0.00 34.76 3.71
2189 2220 2.424956 GCATAGCAACAAAAGGGGAGAG 59.575 50.000 0.00 0.00 0.00 3.20
2190 2221 3.690460 CATAGCAACAAAAGGGGAGAGT 58.310 45.455 0.00 0.00 0.00 3.24
2191 2222 1.986882 AGCAACAAAAGGGGAGAGTG 58.013 50.000 0.00 0.00 0.00 3.51
2192 2223 1.215423 AGCAACAAAAGGGGAGAGTGT 59.785 47.619 0.00 0.00 0.00 3.55
2193 2224 2.031870 GCAACAAAAGGGGAGAGTGTT 58.968 47.619 0.00 0.00 32.78 3.32
2194 2225 3.715628 CAACAAAAGGGGAGAGTGTTG 57.284 47.619 0.00 0.00 42.02 3.33
2195 2226 3.023832 CAACAAAAGGGGAGAGTGTTGT 58.976 45.455 6.66 0.00 42.51 3.32
2196 2227 2.932261 ACAAAAGGGGAGAGTGTTGTC 58.068 47.619 0.00 0.00 0.00 3.18
2197 2228 2.230660 CAAAAGGGGAGAGTGTTGTCC 58.769 52.381 0.00 0.00 36.03 4.02
2198 2229 1.518367 AAAGGGGAGAGTGTTGTCCA 58.482 50.000 0.00 0.00 38.50 4.02
2199 2230 0.765510 AAGGGGAGAGTGTTGTCCAC 59.234 55.000 0.00 0.00 40.47 4.02
2200 2231 1.472662 AGGGGAGAGTGTTGTCCACG 61.473 60.000 0.00 0.00 44.77 4.94
2202 2233 4.748514 AGGGGAGAGTGTTGTCCACGTA 62.749 54.545 0.00 0.00 44.77 3.57
2207 2238 3.206090 GTGTTGTCCACGTACCCTC 57.794 57.895 0.00 0.00 33.61 4.30
2208 2239 0.665369 GTGTTGTCCACGTACCCTCG 60.665 60.000 0.00 0.00 33.61 4.63
2209 2240 1.108727 TGTTGTCCACGTACCCTCGT 61.109 55.000 0.00 0.00 45.10 4.18
2210 2241 0.881118 GTTGTCCACGTACCCTCGTA 59.119 55.000 0.00 0.00 42.27 3.43
2211 2242 1.135575 GTTGTCCACGTACCCTCGTAG 60.136 57.143 0.00 0.00 42.27 3.51
2212 2243 0.677731 TGTCCACGTACCCTCGTAGG 60.678 60.000 0.00 0.00 42.27 3.18
2213 2244 1.750399 TCCACGTACCCTCGTAGGC 60.750 63.158 0.00 0.00 42.27 3.93
2214 2245 2.779033 CCACGTACCCTCGTAGGCC 61.779 68.421 0.00 0.00 42.27 5.19
2215 2246 2.825836 ACGTACCCTCGTAGGCCG 60.826 66.667 0.00 5.19 42.35 6.13
2216 2247 2.514592 CGTACCCTCGTAGGCCGA 60.515 66.667 0.00 0.00 45.00 5.54
2217 2248 2.114670 CGTACCCTCGTAGGCCGAA 61.115 63.158 0.00 0.00 46.75 4.30
2218 2249 1.656818 CGTACCCTCGTAGGCCGAAA 61.657 60.000 0.00 0.00 46.75 3.46
2219 2250 0.101939 GTACCCTCGTAGGCCGAAAG 59.898 60.000 0.00 0.00 46.75 2.62
2220 2251 1.669999 TACCCTCGTAGGCCGAAAGC 61.670 60.000 0.00 0.00 46.75 3.51
2221 2252 2.582498 CCTCGTAGGCCGAAAGCG 60.582 66.667 0.00 0.00 46.75 4.68
2245 2276 1.407434 CGTTAGTACAACGCGGTTGA 58.593 50.000 22.26 0.00 45.28 3.18
2246 2277 1.987770 CGTTAGTACAACGCGGTTGAT 59.012 47.619 22.26 12.77 45.28 2.57
2247 2278 2.222420 CGTTAGTACAACGCGGTTGATG 60.222 50.000 22.26 11.18 45.28 3.07
2248 2279 2.728690 TAGTACAACGCGGTTGATGT 57.271 45.000 22.26 15.44 45.28 3.06
2249 2280 2.728690 AGTACAACGCGGTTGATGTA 57.271 45.000 22.26 14.62 45.28 2.29
2250 2281 2.602878 AGTACAACGCGGTTGATGTAG 58.397 47.619 22.26 1.41 45.28 2.74
2251 2282 2.029649 AGTACAACGCGGTTGATGTAGT 60.030 45.455 22.26 16.19 45.28 2.73
2252 2283 1.425412 ACAACGCGGTTGATGTAGTC 58.575 50.000 22.26 0.00 45.28 2.59
2253 2284 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
2254 2285 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
2255 2286 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
2256 2287 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
2257 2288 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
2258 2289 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
2259 2290 2.434761 CGGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
2260 2291 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
2261 2292 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
2262 2293 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
2263 2294 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
2264 2295 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
2277 2308 3.270962 GTCTTCACGATCCGACCTATC 57.729 52.381 0.00 0.00 0.00 2.08
2278 2309 2.030981 GTCTTCACGATCCGACCTATCC 60.031 54.545 0.00 0.00 0.00 2.59
2279 2310 0.949397 TTCACGATCCGACCTATCCG 59.051 55.000 0.00 0.00 0.00 4.18
2280 2311 0.107268 TCACGATCCGACCTATCCGA 59.893 55.000 0.00 0.00 0.00 4.55
2281 2312 0.517755 CACGATCCGACCTATCCGAG 59.482 60.000 0.00 0.00 0.00 4.63
2282 2313 0.108207 ACGATCCGACCTATCCGAGT 59.892 55.000 0.00 0.00 0.00 4.18
2283 2314 1.345741 ACGATCCGACCTATCCGAGTA 59.654 52.381 0.00 0.00 0.00 2.59
2284 2315 1.731160 CGATCCGACCTATCCGAGTAC 59.269 57.143 0.00 0.00 0.00 2.73
2285 2316 2.083002 GATCCGACCTATCCGAGTACC 58.917 57.143 0.00 0.00 0.00 3.34
2286 2317 0.250038 TCCGACCTATCCGAGTACCG 60.250 60.000 0.00 0.00 38.18 4.02
2287 2318 0.250038 CCGACCTATCCGAGTACCGA 60.250 60.000 5.46 0.00 41.76 4.69
2288 2319 1.586422 CGACCTATCCGAGTACCGAA 58.414 55.000 5.46 0.00 41.76 4.30
2289 2320 1.262683 CGACCTATCCGAGTACCGAAC 59.737 57.143 5.46 0.00 41.76 3.95
2290 2321 1.262683 GACCTATCCGAGTACCGAACG 59.737 57.143 5.46 0.00 41.76 3.95
2291 2322 1.303309 CCTATCCGAGTACCGAACGT 58.697 55.000 5.46 0.00 41.76 3.99
2292 2323 2.158957 ACCTATCCGAGTACCGAACGTA 60.159 50.000 5.46 0.00 41.76 3.57
2293 2324 2.221981 CCTATCCGAGTACCGAACGTAC 59.778 54.545 5.46 0.00 46.69 3.67
2301 2332 2.505557 CCGAACGTACGGCACCTC 60.506 66.667 21.06 6.84 46.20 3.85
2302 2333 2.505557 CGAACGTACGGCACCTCC 60.506 66.667 21.06 0.00 0.00 4.30
2311 2342 2.435059 GGCACCTCCGAGTTCAGC 60.435 66.667 0.00 0.00 0.00 4.26
2312 2343 2.343758 GCACCTCCGAGTTCAGCA 59.656 61.111 0.00 0.00 0.00 4.41
2313 2344 2.029844 GCACCTCCGAGTTCAGCAC 61.030 63.158 0.00 0.00 0.00 4.40
2314 2345 1.367471 CACCTCCGAGTTCAGCACA 59.633 57.895 0.00 0.00 0.00 4.57
2315 2346 0.946221 CACCTCCGAGTTCAGCACAC 60.946 60.000 0.00 0.00 0.00 3.82
2316 2347 1.734477 CCTCCGAGTTCAGCACACG 60.734 63.158 0.00 0.00 39.03 4.49
2317 2348 1.007271 CTCCGAGTTCAGCACACGT 60.007 57.895 0.00 0.00 37.75 4.49
2318 2349 0.597637 CTCCGAGTTCAGCACACGTT 60.598 55.000 0.00 0.00 37.75 3.99
2319 2350 0.596600 TCCGAGTTCAGCACACGTTC 60.597 55.000 0.00 0.00 37.75 3.95
2320 2351 0.874175 CCGAGTTCAGCACACGTTCA 60.874 55.000 0.00 0.00 37.75 3.18
2321 2352 0.504384 CGAGTTCAGCACACGTTCAG 59.496 55.000 0.00 0.00 35.01 3.02
2322 2353 0.233332 GAGTTCAGCACACGTTCAGC 59.767 55.000 0.00 0.00 0.00 4.26
2323 2354 0.179073 AGTTCAGCACACGTTCAGCT 60.179 50.000 0.64 0.64 39.63 4.24
2324 2355 0.233332 GTTCAGCACACGTTCAGCTC 59.767 55.000 3.38 0.00 36.26 4.09
2325 2356 1.215014 TTCAGCACACGTTCAGCTCG 61.215 55.000 3.38 0.00 36.26 5.03
2326 2357 1.661509 CAGCACACGTTCAGCTCGA 60.662 57.895 3.38 0.00 36.26 4.04
2327 2358 1.010935 CAGCACACGTTCAGCTCGAT 61.011 55.000 3.38 0.00 36.26 3.59
2328 2359 1.010935 AGCACACGTTCAGCTCGATG 61.011 55.000 0.00 0.07 32.05 3.84
2329 2360 1.008875 GCACACGTTCAGCTCGATGA 61.009 55.000 0.00 0.00 0.00 2.92
2330 2361 0.710567 CACACGTTCAGCTCGATGAC 59.289 55.000 0.00 0.00 0.00 3.06
2331 2362 0.729478 ACACGTTCAGCTCGATGACG 60.729 55.000 0.00 4.93 41.26 4.35
2332 2363 0.729478 CACGTTCAGCTCGATGACGT 60.729 55.000 0.00 5.49 37.39 4.34
2333 2364 0.454620 ACGTTCAGCTCGATGACGTC 60.455 55.000 9.11 9.11 40.69 4.34
2334 2365 1.134530 CGTTCAGCTCGATGACGTCC 61.135 60.000 14.12 0.00 40.69 4.79
2335 2366 0.802607 GTTCAGCTCGATGACGTCCC 60.803 60.000 14.12 3.95 40.69 4.46
2336 2367 0.965866 TTCAGCTCGATGACGTCCCT 60.966 55.000 14.12 0.00 40.69 4.20
2337 2368 1.064946 CAGCTCGATGACGTCCCTC 59.935 63.158 14.12 9.05 40.69 4.30
2338 2369 2.024871 GCTCGATGACGTCCCTCG 59.975 66.667 23.88 23.88 46.00 4.63
2339 2370 2.470362 GCTCGATGACGTCCCTCGA 61.470 63.158 27.81 27.81 42.86 4.04
2340 2371 1.989966 GCTCGATGACGTCCCTCGAA 61.990 60.000 28.71 18.23 40.52 3.71
2341 2372 0.248134 CTCGATGACGTCCCTCGAAC 60.248 60.000 28.71 6.04 40.52 3.95
2342 2373 0.675837 TCGATGACGTCCCTCGAACT 60.676 55.000 27.70 0.60 42.86 3.01
2343 2374 0.248134 CGATGACGTCCCTCGAACTC 60.248 60.000 24.99 5.48 42.86 3.01
2344 2375 0.100861 GATGACGTCCCTCGAACTCC 59.899 60.000 14.12 0.00 42.86 3.85
2345 2376 1.654954 ATGACGTCCCTCGAACTCCG 61.655 60.000 14.12 0.00 42.86 4.63
2346 2377 2.033141 ACGTCCCTCGAACTCCGA 59.967 61.111 1.88 0.00 46.35 4.55
2353 2384 3.207354 TCGAACTCCGATCCAGCC 58.793 61.111 0.00 0.00 43.23 4.85
2354 2385 2.278857 CGAACTCCGATCCAGCCG 60.279 66.667 0.00 0.00 41.76 5.52
2355 2386 2.771639 CGAACTCCGATCCAGCCGA 61.772 63.158 0.00 0.00 41.76 5.54
2356 2387 1.066587 GAACTCCGATCCAGCCGAG 59.933 63.158 0.00 0.00 0.00 4.63
2357 2388 2.962697 GAACTCCGATCCAGCCGAGC 62.963 65.000 0.00 0.00 0.00 5.03
2358 2389 3.222855 CTCCGATCCAGCCGAGCT 61.223 66.667 0.00 0.00 40.77 4.09
2359 2390 2.759973 TCCGATCCAGCCGAGCTT 60.760 61.111 0.00 0.00 36.40 3.74
2360 2391 2.187946 CCGATCCAGCCGAGCTTT 59.812 61.111 0.00 0.00 36.40 3.51
2361 2392 2.176273 CCGATCCAGCCGAGCTTTG 61.176 63.158 0.00 0.00 36.40 2.77
2362 2393 1.153568 CGATCCAGCCGAGCTTTGA 60.154 57.895 0.00 0.00 36.40 2.69
2363 2394 1.150567 CGATCCAGCCGAGCTTTGAG 61.151 60.000 0.00 0.00 36.40 3.02
2364 2395 0.813210 GATCCAGCCGAGCTTTGAGG 60.813 60.000 0.00 0.00 36.40 3.86
2365 2396 2.262774 ATCCAGCCGAGCTTTGAGGG 62.263 60.000 0.00 0.00 36.40 4.30
2366 2397 2.665000 CAGCCGAGCTTTGAGGGA 59.335 61.111 0.00 0.00 36.40 4.20
2367 2398 1.449246 CAGCCGAGCTTTGAGGGAG 60.449 63.158 0.00 0.00 36.40 4.30
2368 2399 1.610673 AGCCGAGCTTTGAGGGAGA 60.611 57.895 0.00 0.00 33.89 3.71
2369 2400 1.448717 GCCGAGCTTTGAGGGAGAC 60.449 63.158 0.00 0.00 0.00 3.36
2370 2401 1.893919 GCCGAGCTTTGAGGGAGACT 61.894 60.000 0.00 0.00 0.00 3.24
2371 2402 0.610687 CCGAGCTTTGAGGGAGACTT 59.389 55.000 0.00 0.00 0.00 3.01
2372 2403 1.404851 CCGAGCTTTGAGGGAGACTTC 60.405 57.143 0.00 0.00 36.88 3.01
2373 2404 1.404851 CGAGCTTTGAGGGAGACTTCC 60.405 57.143 0.00 0.00 43.23 3.46
2374 2405 0.610687 AGCTTTGAGGGAGACTTCCG 59.389 55.000 0.00 0.00 45.04 4.30
2375 2406 0.321996 GCTTTGAGGGAGACTTCCGT 59.678 55.000 0.00 0.00 45.04 4.69
2379 2410 3.701454 AGGGAGACTTCCGTCAGC 58.299 61.111 0.00 0.00 45.04 4.26
2380 2411 1.228894 AGGGAGACTTCCGTCAGCA 60.229 57.895 0.00 0.00 45.04 4.41
2381 2412 1.079750 GGGAGACTTCCGTCAGCAC 60.080 63.158 0.00 0.00 45.04 4.40
2382 2413 1.444553 GGAGACTTCCGTCAGCACG 60.445 63.158 0.00 0.00 46.29 5.34
2402 2433 3.118454 GGCGTGGTGACGGTGATG 61.118 66.667 0.00 0.00 46.20 3.07
2403 2434 2.048597 GCGTGGTGACGGTGATGA 60.049 61.111 0.00 0.00 46.20 2.92
2404 2435 1.447838 GCGTGGTGACGGTGATGAT 60.448 57.895 0.00 0.00 46.20 2.45
2405 2436 1.695893 GCGTGGTGACGGTGATGATG 61.696 60.000 0.00 0.00 46.20 3.07
2406 2437 0.108851 CGTGGTGACGGTGATGATGA 60.109 55.000 0.00 0.00 42.18 2.92
2407 2438 1.471501 CGTGGTGACGGTGATGATGAT 60.472 52.381 0.00 0.00 42.18 2.45
2408 2439 1.935873 GTGGTGACGGTGATGATGATG 59.064 52.381 0.00 0.00 0.00 3.07
2409 2440 0.940126 GGTGACGGTGATGATGATGC 59.060 55.000 0.00 0.00 0.00 3.91
2410 2441 1.473965 GGTGACGGTGATGATGATGCT 60.474 52.381 0.00 0.00 0.00 3.79
2411 2442 2.224042 GGTGACGGTGATGATGATGCTA 60.224 50.000 0.00 0.00 0.00 3.49
2412 2443 2.797156 GTGACGGTGATGATGATGCTAC 59.203 50.000 0.00 0.00 0.00 3.58
2413 2444 2.224042 TGACGGTGATGATGATGCTACC 60.224 50.000 0.00 0.00 0.00 3.18
2414 2445 1.422388 CGGTGATGATGATGCTACCG 58.578 55.000 0.00 0.00 43.93 4.02
2415 2446 2.820059 GGTGATGATGATGCTACCGA 57.180 50.000 0.00 0.00 0.00 4.69
2416 2447 3.325293 GGTGATGATGATGCTACCGAT 57.675 47.619 0.00 0.00 0.00 4.18
2417 2448 2.998670 GGTGATGATGATGCTACCGATG 59.001 50.000 0.00 0.00 0.00 3.84
2418 2449 2.414481 GTGATGATGATGCTACCGATGC 59.586 50.000 0.00 0.00 0.00 3.91
2419 2450 2.037511 TGATGATGATGCTACCGATGCA 59.962 45.455 0.00 0.00 44.95 3.96
2420 2451 2.159327 TGATGATGCTACCGATGCAG 57.841 50.000 0.00 0.00 44.04 4.41
2421 2452 1.270465 TGATGATGCTACCGATGCAGG 60.270 52.381 0.00 0.00 44.04 4.85
2422 2453 0.035881 ATGATGCTACCGATGCAGGG 59.964 55.000 5.09 5.09 44.04 4.45
2423 2454 1.963338 GATGCTACCGATGCAGGGC 60.963 63.158 6.50 0.00 44.04 5.19
2424 2455 2.388890 GATGCTACCGATGCAGGGCT 62.389 60.000 6.50 0.00 44.04 5.19
2425 2456 1.987807 ATGCTACCGATGCAGGGCTT 61.988 55.000 6.50 0.00 44.04 4.35
2426 2457 1.889573 GCTACCGATGCAGGGCTTC 60.890 63.158 6.50 0.00 35.02 3.86
2440 2471 2.125512 CTTCGCCTAAGCACCGCT 60.126 61.111 0.00 0.00 42.56 5.52
2441 2472 1.141019 CTTCGCCTAAGCACCGCTA 59.859 57.895 0.00 0.00 38.25 4.26
2442 2473 1.146358 CTTCGCCTAAGCACCGCTAC 61.146 60.000 0.00 0.00 38.25 3.58
2443 2474 2.877360 TTCGCCTAAGCACCGCTACG 62.877 60.000 0.00 0.00 38.25 3.51
2444 2475 2.493030 GCCTAAGCACCGCTACGA 59.507 61.111 0.00 0.00 38.25 3.43
2445 2476 1.067582 GCCTAAGCACCGCTACGAT 59.932 57.895 0.00 0.00 38.25 3.73
2446 2477 0.313043 GCCTAAGCACCGCTACGATA 59.687 55.000 0.00 0.00 38.25 2.92
2447 2478 1.067776 GCCTAAGCACCGCTACGATAT 60.068 52.381 0.00 0.00 38.25 1.63
2448 2479 2.596452 CCTAAGCACCGCTACGATATG 58.404 52.381 0.00 0.00 38.25 1.78
2449 2480 2.228103 CCTAAGCACCGCTACGATATGA 59.772 50.000 0.00 0.00 38.25 2.15
2450 2481 3.119459 CCTAAGCACCGCTACGATATGAT 60.119 47.826 0.00 0.00 38.25 2.45
2451 2482 2.638556 AGCACCGCTACGATATGATC 57.361 50.000 0.00 0.00 36.99 2.92
2466 2497 6.227298 GATATGATCGAGGTGGAATATGGT 57.773 41.667 0.00 0.00 0.00 3.55
2467 2498 3.751479 TGATCGAGGTGGAATATGGTG 57.249 47.619 0.00 0.00 0.00 4.17
2468 2499 2.368548 TGATCGAGGTGGAATATGGTGG 59.631 50.000 0.00 0.00 0.00 4.61
2469 2500 2.168458 TCGAGGTGGAATATGGTGGA 57.832 50.000 0.00 0.00 0.00 4.02
2470 2501 2.039418 TCGAGGTGGAATATGGTGGAG 58.961 52.381 0.00 0.00 0.00 3.86
2471 2502 1.070758 CGAGGTGGAATATGGTGGAGG 59.929 57.143 0.00 0.00 0.00 4.30
2472 2503 1.421646 GAGGTGGAATATGGTGGAGGG 59.578 57.143 0.00 0.00 0.00 4.30
2473 2504 0.478507 GGTGGAATATGGTGGAGGGG 59.521 60.000 0.00 0.00 0.00 4.79
2474 2505 0.478507 GTGGAATATGGTGGAGGGGG 59.521 60.000 0.00 0.00 0.00 5.40
2491 2522 2.281208 GGCACCACACACGGCTAA 60.281 61.111 0.00 0.00 0.00 3.09
2492 2523 2.325082 GGCACCACACACGGCTAAG 61.325 63.158 0.00 0.00 0.00 2.18
2493 2524 1.301401 GCACCACACACGGCTAAGA 60.301 57.895 0.00 0.00 0.00 2.10
2494 2525 1.291877 GCACCACACACGGCTAAGAG 61.292 60.000 0.00 0.00 0.00 2.85
2495 2526 0.317160 CACCACACACGGCTAAGAGA 59.683 55.000 0.00 0.00 0.00 3.10
2496 2527 1.066858 CACCACACACGGCTAAGAGAT 60.067 52.381 0.00 0.00 0.00 2.75
2497 2528 1.204941 ACCACACACGGCTAAGAGATC 59.795 52.381 0.00 0.00 0.00 2.75
2498 2529 1.204704 CCACACACGGCTAAGAGATCA 59.795 52.381 0.00 0.00 0.00 2.92
2499 2530 2.353704 CCACACACGGCTAAGAGATCAA 60.354 50.000 0.00 0.00 0.00 2.57
2500 2531 2.926200 CACACACGGCTAAGAGATCAAG 59.074 50.000 0.00 0.00 0.00 3.02
2501 2532 2.826128 ACACACGGCTAAGAGATCAAGA 59.174 45.455 0.00 0.00 0.00 3.02
2502 2533 3.119316 ACACACGGCTAAGAGATCAAGAG 60.119 47.826 0.00 0.00 0.00 2.85
2503 2534 3.129462 CACACGGCTAAGAGATCAAGAGA 59.871 47.826 0.00 0.00 0.00 3.10
2504 2535 3.957497 ACACGGCTAAGAGATCAAGAGAT 59.043 43.478 0.00 0.00 37.13 2.75
2520 2551 7.895975 TCAAGAGATCAATTGTTGTGTCTAG 57.104 36.000 5.13 0.00 30.84 2.43
2521 2552 7.670364 TCAAGAGATCAATTGTTGTGTCTAGA 58.330 34.615 5.13 0.00 30.84 2.43
2522 2553 7.816513 TCAAGAGATCAATTGTTGTGTCTAGAG 59.183 37.037 5.13 2.22 30.84 2.43
2523 2554 6.638610 AGAGATCAATTGTTGTGTCTAGAGG 58.361 40.000 5.13 0.00 30.84 3.69
2524 2555 6.212388 AGAGATCAATTGTTGTGTCTAGAGGT 59.788 38.462 5.13 0.00 30.84 3.85
2525 2556 6.169094 AGATCAATTGTTGTGTCTAGAGGTG 58.831 40.000 5.13 0.00 0.00 4.00
2526 2557 4.065088 TCAATTGTTGTGTCTAGAGGTGC 58.935 43.478 5.13 0.00 0.00 5.01
2527 2558 2.543777 TTGTTGTGTCTAGAGGTGCC 57.456 50.000 0.00 0.00 0.00 5.01
2528 2559 0.685097 TGTTGTGTCTAGAGGTGCCC 59.315 55.000 0.00 0.00 0.00 5.36
2529 2560 0.036294 GTTGTGTCTAGAGGTGCCCC 60.036 60.000 0.00 0.00 0.00 5.80
2530 2561 1.198759 TTGTGTCTAGAGGTGCCCCC 61.199 60.000 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.304592 CGTGATTGGTTTGAGTTGCATGA 60.305 43.478 0.00 0.00 0.00 3.07
72 73 5.922053 TGATGTATGGCTATCCTATGATGC 58.078 41.667 0.00 0.00 32.18 3.91
160 161 2.627945 CCCTCTATGCAACGCTGTAAA 58.372 47.619 0.00 0.00 0.00 2.01
214 216 1.135888 TCACGACAACGATCTACACCG 60.136 52.381 0.00 0.00 42.66 4.94
407 417 3.303395 CGCAGAAACAGAAGGAAACAGAC 60.303 47.826 0.00 0.00 0.00 3.51
515 527 3.724374 CCGTAAGAAAGCCAATATCCGA 58.276 45.455 0.00 0.00 43.02 4.55
748 763 3.441496 AGTTCCTGTTTGTTGCATGTG 57.559 42.857 0.00 0.00 0.00 3.21
835 851 6.318648 TGTTCCATGCCAATATTCTACAACTC 59.681 38.462 0.00 0.00 0.00 3.01
894 910 4.681074 TCTACACATGACCAGAACACAA 57.319 40.909 0.00 0.00 0.00 3.33
895 911 4.890158 ATCTACACATGACCAGAACACA 57.110 40.909 0.00 0.00 0.00 3.72
896 912 7.667043 TTAAATCTACACATGACCAGAACAC 57.333 36.000 0.00 0.00 0.00 3.32
897 913 9.599866 CTATTAAATCTACACATGACCAGAACA 57.400 33.333 0.00 0.00 0.00 3.18
898 914 9.601217 ACTATTAAATCTACACATGACCAGAAC 57.399 33.333 0.00 0.00 0.00 3.01
899 915 9.599866 CACTATTAAATCTACACATGACCAGAA 57.400 33.333 0.00 0.00 0.00 3.02
900 916 8.977412 TCACTATTAAATCTACACATGACCAGA 58.023 33.333 0.00 0.00 0.00 3.86
901 917 9.599866 TTCACTATTAAATCTACACATGACCAG 57.400 33.333 0.00 0.00 0.00 4.00
902 918 9.952030 TTTCACTATTAAATCTACACATGACCA 57.048 29.630 0.00 0.00 0.00 4.02
925 941 5.335127 AGCAGCACACGAAATCATTATTTC 58.665 37.500 0.00 2.75 45.06 2.17
926 942 5.314923 AGCAGCACACGAAATCATTATTT 57.685 34.783 0.00 0.00 38.03 1.40
927 943 4.970662 AGCAGCACACGAAATCATTATT 57.029 36.364 0.00 0.00 0.00 1.40
928 944 6.432936 CATTAGCAGCACACGAAATCATTAT 58.567 36.000 0.00 0.00 0.00 1.28
929 945 5.730289 GCATTAGCAGCACACGAAATCATTA 60.730 40.000 0.00 0.00 41.58 1.90
938 954 0.179181 CTTGGCATTAGCAGCACACG 60.179 55.000 0.00 0.00 44.61 4.49
1164 1186 7.272978 TGAGCAAATACTTCCTAAGACCATAC 58.727 38.462 0.00 0.00 0.00 2.39
1204 1226 7.615403 TCATCATAGCAAGTTACTTCTGAACT 58.385 34.615 0.00 0.00 38.81 3.01
1277 1299 1.605710 CAACCAAGCCACACTTCTCAG 59.394 52.381 0.00 0.00 36.04 3.35
1323 1345 8.925338 ACCACCAATAAAAACATTACAACCTTA 58.075 29.630 0.00 0.00 0.00 2.69
1331 1353 7.361457 TGTCCAACCACCAATAAAAACATTA 57.639 32.000 0.00 0.00 0.00 1.90
1357 1379 3.582647 TGGAGCAACCTCATCTTAAGACA 59.417 43.478 7.48 0.00 39.96 3.41
1379 1401 1.165270 GGAACGCTTGTAAGTGCCAT 58.835 50.000 5.16 0.00 40.10 4.40
1398 1420 8.685838 AGAAGTGCCTACTAATAGTCTCTAAG 57.314 38.462 0.00 0.00 35.69 2.18
1437 1459 2.017049 CCACTTAGGGAAAGAATGGCG 58.983 52.381 0.00 0.00 38.67 5.69
1485 1511 7.395190 TTTGTAATCATCTGGAGGTTCAATG 57.605 36.000 0.00 0.00 0.00 2.82
1515 1542 1.546589 CCCAATGCATTGCCACCACT 61.547 55.000 30.15 0.00 36.48 4.00
1516 1543 1.078988 CCCAATGCATTGCCACCAC 60.079 57.895 30.15 0.00 36.48 4.16
1517 1544 1.229114 TCCCAATGCATTGCCACCA 60.229 52.632 30.15 11.01 36.48 4.17
1519 1546 1.153509 GCTCCCAATGCATTGCCAC 60.154 57.895 30.15 16.57 36.48 5.01
1589 1617 9.202273 GTGATATCTTGCTTTCTGTTCCTATAG 57.798 37.037 3.98 0.00 0.00 1.31
1692 1721 4.466015 TGCATCACACAATACTCTGGAGTA 59.534 41.667 12.09 12.09 46.68 2.59
1707 1736 3.062504 CGATCGTTTCTCATTGCATCACA 59.937 43.478 7.03 0.00 0.00 3.58
1751 1780 5.648092 CCAAGAAAAACTAGTCATACCCTGG 59.352 44.000 0.00 0.00 0.00 4.45
1839 1868 3.973973 AGCCAGCATCCACTAGGTAATAA 59.026 43.478 0.00 0.00 35.89 1.40
1871 1900 0.971386 ATGGAGCCAAAAGCCAAGTG 59.029 50.000 0.00 0.00 45.47 3.16
1874 1903 3.505386 TCTAAATGGAGCCAAAAGCCAA 58.495 40.909 0.00 0.00 45.47 4.52
1892 1922 5.363562 TCAAGTGGTACCTAGTCGATCTA 57.636 43.478 14.36 0.00 0.00 1.98
2029 2060 5.393068 AGATTGAATTCTTAGGATGGCCA 57.607 39.130 8.56 8.56 36.29 5.36
2111 2142 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
2112 2143 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
2134 2165 2.325509 GCGTGTGCGTAGGAATTTTT 57.674 45.000 0.00 0.00 40.81 1.94
2146 2177 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
2147 2178 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
2148 2179 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
2149 2180 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
2150 2181 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
2151 2182 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
2152 2183 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
2153 2184 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
2154 2185 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
2155 2186 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
2156 2187 3.566742 TGTTGCTATGCATCACCATGATC 59.433 43.478 0.19 0.00 38.76 2.92
2157 2188 3.558033 TGTTGCTATGCATCACCATGAT 58.442 40.909 0.19 0.00 38.76 2.45
2158 2189 3.002038 TGTTGCTATGCATCACCATGA 57.998 42.857 0.19 0.00 38.76 3.07
2159 2190 3.786516 TTGTTGCTATGCATCACCATG 57.213 42.857 0.19 0.00 37.87 3.66
2160 2191 4.382254 CCTTTTGTTGCTATGCATCACCAT 60.382 41.667 0.19 0.00 37.87 3.55
2161 2192 3.056678 CCTTTTGTTGCTATGCATCACCA 60.057 43.478 0.19 0.00 37.87 4.17
2162 2193 3.514645 CCTTTTGTTGCTATGCATCACC 58.485 45.455 0.19 0.00 37.87 4.02
2163 2194 3.514645 CCCTTTTGTTGCTATGCATCAC 58.485 45.455 0.19 0.00 37.87 3.06
2164 2195 2.496871 CCCCTTTTGTTGCTATGCATCA 59.503 45.455 0.19 0.00 38.76 3.07
2165 2196 2.760092 TCCCCTTTTGTTGCTATGCATC 59.240 45.455 0.19 0.00 38.76 3.91
2166 2197 2.762327 CTCCCCTTTTGTTGCTATGCAT 59.238 45.455 3.79 3.79 38.76 3.96
2167 2198 2.170166 CTCCCCTTTTGTTGCTATGCA 58.830 47.619 0.00 0.00 36.47 3.96
2168 2199 2.424956 CTCTCCCCTTTTGTTGCTATGC 59.575 50.000 0.00 0.00 0.00 3.14
2169 2200 3.441572 CACTCTCCCCTTTTGTTGCTATG 59.558 47.826 0.00 0.00 0.00 2.23
2170 2201 3.074538 ACACTCTCCCCTTTTGTTGCTAT 59.925 43.478 0.00 0.00 0.00 2.97
2171 2202 2.441750 ACACTCTCCCCTTTTGTTGCTA 59.558 45.455 0.00 0.00 0.00 3.49
2172 2203 1.215423 ACACTCTCCCCTTTTGTTGCT 59.785 47.619 0.00 0.00 0.00 3.91
2173 2204 1.692411 ACACTCTCCCCTTTTGTTGC 58.308 50.000 0.00 0.00 0.00 4.17
2174 2205 3.715628 CAACACTCTCCCCTTTTGTTG 57.284 47.619 0.00 0.00 40.65 3.33
2175 2206 3.288092 GACAACACTCTCCCCTTTTGTT 58.712 45.455 0.00 0.00 0.00 2.83
2176 2207 2.422945 GGACAACACTCTCCCCTTTTGT 60.423 50.000 0.00 0.00 0.00 2.83
2177 2208 2.230660 GGACAACACTCTCCCCTTTTG 58.769 52.381 0.00 0.00 0.00 2.44
2178 2209 1.850345 TGGACAACACTCTCCCCTTTT 59.150 47.619 0.00 0.00 0.00 2.27
2179 2210 1.143073 GTGGACAACACTCTCCCCTTT 59.857 52.381 0.00 0.00 46.72 3.11
2180 2211 0.765510 GTGGACAACACTCTCCCCTT 59.234 55.000 0.00 0.00 46.72 3.95
2181 2212 2.453242 GTGGACAACACTCTCCCCT 58.547 57.895 0.00 0.00 46.72 4.79
2189 2220 0.665369 CGAGGGTACGTGGACAACAC 60.665 60.000 0.00 0.00 46.78 3.32
2190 2221 1.108727 ACGAGGGTACGTGGACAACA 61.109 55.000 0.00 0.00 44.84 3.33
2191 2222 0.881118 TACGAGGGTACGTGGACAAC 59.119 55.000 0.00 0.00 46.02 3.32
2192 2223 1.167851 CTACGAGGGTACGTGGACAA 58.832 55.000 0.00 0.00 44.98 3.18
2193 2224 0.677731 CCTACGAGGGTACGTGGACA 60.678 60.000 0.00 0.00 44.98 4.02
2194 2225 1.997928 GCCTACGAGGGTACGTGGAC 61.998 65.000 0.00 0.00 44.98 4.02
2195 2226 1.750399 GCCTACGAGGGTACGTGGA 60.750 63.158 0.00 0.00 44.98 4.02
2196 2227 2.779033 GGCCTACGAGGGTACGTGG 61.779 68.421 0.00 0.00 46.02 4.94
2197 2228 2.803479 GGCCTACGAGGGTACGTG 59.197 66.667 0.00 0.00 46.02 4.49
2214 2245 1.319669 GTACTAACGCTTCCGCTTTCG 59.680 52.381 0.00 0.00 38.22 3.46
2215 2246 2.331194 TGTACTAACGCTTCCGCTTTC 58.669 47.619 0.00 0.00 38.22 2.62
2216 2247 2.443887 TGTACTAACGCTTCCGCTTT 57.556 45.000 0.00 0.00 38.22 3.51
2217 2248 2.064014 GTTGTACTAACGCTTCCGCTT 58.936 47.619 0.00 0.00 38.22 4.68
2218 2249 1.706443 GTTGTACTAACGCTTCCGCT 58.294 50.000 0.00 0.00 38.22 5.52
2219 2250 0.364515 CGTTGTACTAACGCTTCCGC 59.635 55.000 14.50 0.00 36.82 5.54
2226 2257 1.407434 TCAACCGCGTTGTACTAACG 58.593 50.000 19.53 19.53 43.23 3.18
2227 2258 2.733026 ACATCAACCGCGTTGTACTAAC 59.267 45.455 16.97 0.00 43.23 2.34
2228 2259 3.029320 ACATCAACCGCGTTGTACTAA 57.971 42.857 16.97 2.99 43.23 2.24
2229 2260 2.728690 ACATCAACCGCGTTGTACTA 57.271 45.000 16.97 3.28 43.23 1.82
2230 2261 2.029649 ACTACATCAACCGCGTTGTACT 60.030 45.455 16.97 6.88 43.23 2.73
2231 2262 2.331194 ACTACATCAACCGCGTTGTAC 58.669 47.619 16.97 0.00 43.23 2.90
2232 2263 2.598589 GACTACATCAACCGCGTTGTA 58.401 47.619 16.97 10.48 43.23 2.41
2233 2264 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
2234 2265 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
2235 2266 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
2236 2267 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
2237 2268 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
2238 2269 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
2239 2270 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
2240 2271 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
2241 2272 4.552660 GTGAAGACGTACGACTACATCAAC 59.447 45.833 24.41 11.90 0.00 3.18
2242 2273 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
2243 2274 3.181527 CGTGAAGACGTACGACTACATCA 60.182 47.826 24.41 18.00 42.54 3.07
2244 2275 3.061295 TCGTGAAGACGTACGACTACATC 59.939 47.826 24.41 15.62 46.20 3.06
2245 2276 2.995939 TCGTGAAGACGTACGACTACAT 59.004 45.455 24.41 6.17 46.20 2.29
2246 2277 2.403259 TCGTGAAGACGTACGACTACA 58.597 47.619 24.41 13.28 46.20 2.74
2252 2283 0.371301 TCGGATCGTGAAGACGTACG 59.629 55.000 15.01 15.01 46.20 3.67
2253 2284 1.530646 GGTCGGATCGTGAAGACGTAC 60.531 57.143 0.00 0.00 46.20 3.67
2254 2285 0.729116 GGTCGGATCGTGAAGACGTA 59.271 55.000 0.00 0.00 46.20 3.57
2255 2286 0.959372 AGGTCGGATCGTGAAGACGT 60.959 55.000 0.00 0.00 46.20 4.34
2257 2288 2.030981 GGATAGGTCGGATCGTGAAGAC 60.031 54.545 0.00 0.00 0.00 3.01
2258 2289 2.228059 GGATAGGTCGGATCGTGAAGA 58.772 52.381 0.00 0.00 0.00 2.87
2259 2290 1.069159 CGGATAGGTCGGATCGTGAAG 60.069 57.143 0.00 0.00 0.00 3.02
2260 2291 0.949397 CGGATAGGTCGGATCGTGAA 59.051 55.000 0.00 0.00 0.00 3.18
2261 2292 0.107268 TCGGATAGGTCGGATCGTGA 59.893 55.000 0.00 0.00 0.00 4.35
2262 2293 0.517755 CTCGGATAGGTCGGATCGTG 59.482 60.000 0.00 0.00 33.82 4.35
2263 2294 0.108207 ACTCGGATAGGTCGGATCGT 59.892 55.000 0.00 0.00 33.82 3.73
2264 2295 1.731160 GTACTCGGATAGGTCGGATCG 59.269 57.143 0.00 0.00 33.82 3.69
2265 2296 2.083002 GGTACTCGGATAGGTCGGATC 58.917 57.143 0.00 0.00 33.82 3.36
2266 2297 1.610102 CGGTACTCGGATAGGTCGGAT 60.610 57.143 0.00 0.00 33.82 4.18
2267 2298 0.250038 CGGTACTCGGATAGGTCGGA 60.250 60.000 0.00 0.00 34.75 4.55
2268 2299 0.250038 TCGGTACTCGGATAGGTCGG 60.250 60.000 0.00 0.00 39.77 4.79
2269 2300 1.262683 GTTCGGTACTCGGATAGGTCG 59.737 57.143 0.00 0.00 39.77 4.79
2270 2301 1.262683 CGTTCGGTACTCGGATAGGTC 59.737 57.143 0.00 0.00 39.77 3.85
2271 2302 1.303309 CGTTCGGTACTCGGATAGGT 58.697 55.000 0.00 0.00 39.77 3.08
2272 2303 1.303309 ACGTTCGGTACTCGGATAGG 58.697 55.000 0.00 0.00 39.77 2.57
2273 2304 3.511856 GTACGTTCGGTACTCGGATAG 57.488 52.381 0.00 0.00 46.50 2.08
2285 2316 2.505557 GGAGGTGCCGTACGTTCG 60.506 66.667 15.21 7.68 0.00 3.95
2294 2325 2.435059 GCTGAACTCGGAGGTGCC 60.435 66.667 10.23 0.00 0.00 5.01
2295 2326 2.029844 GTGCTGAACTCGGAGGTGC 61.030 63.158 10.23 4.15 0.00 5.01
2296 2327 0.946221 GTGTGCTGAACTCGGAGGTG 60.946 60.000 10.23 0.00 0.00 4.00
2297 2328 1.367840 GTGTGCTGAACTCGGAGGT 59.632 57.895 10.23 1.51 0.00 3.85
2298 2329 1.734477 CGTGTGCTGAACTCGGAGG 60.734 63.158 10.23 0.00 41.05 4.30
2299 2330 3.848142 CGTGTGCTGAACTCGGAG 58.152 61.111 2.83 2.83 41.05 4.63
2303 2334 0.233332 GCTGAACGTGTGCTGAACTC 59.767 55.000 0.00 0.00 0.00 3.01
2304 2335 0.179073 AGCTGAACGTGTGCTGAACT 60.179 50.000 8.99 0.00 35.54 3.01
2305 2336 0.233332 GAGCTGAACGTGTGCTGAAC 59.767 55.000 13.62 0.00 37.16 3.18
2306 2337 1.215014 CGAGCTGAACGTGTGCTGAA 61.215 55.000 13.62 0.00 37.16 3.02
2307 2338 1.661509 CGAGCTGAACGTGTGCTGA 60.662 57.895 13.62 0.00 37.16 4.26
2308 2339 1.010935 ATCGAGCTGAACGTGTGCTG 61.011 55.000 13.62 7.51 37.16 4.41
2309 2340 1.010935 CATCGAGCTGAACGTGTGCT 61.011 55.000 9.46 9.46 40.02 4.40
2310 2341 1.008875 TCATCGAGCTGAACGTGTGC 61.009 55.000 0.00 0.00 0.00 4.57
2311 2342 0.710567 GTCATCGAGCTGAACGTGTG 59.289 55.000 0.00 0.00 0.00 3.82
2312 2343 0.729478 CGTCATCGAGCTGAACGTGT 60.729 55.000 0.00 0.00 39.71 4.49
2313 2344 0.729478 ACGTCATCGAGCTGAACGTG 60.729 55.000 12.23 3.66 40.62 4.49
2314 2345 0.454620 GACGTCATCGAGCTGAACGT 60.455 55.000 11.55 12.62 40.62 3.99
2315 2346 1.134530 GGACGTCATCGAGCTGAACG 61.135 60.000 18.91 0.00 40.62 3.95
2316 2347 0.802607 GGGACGTCATCGAGCTGAAC 60.803 60.000 18.91 0.00 40.62 3.18
2317 2348 0.965866 AGGGACGTCATCGAGCTGAA 60.966 55.000 18.91 0.00 40.62 3.02
2318 2349 1.377366 GAGGGACGTCATCGAGCTGA 61.377 60.000 18.91 0.00 40.62 4.26
2319 2350 1.064946 GAGGGACGTCATCGAGCTG 59.935 63.158 18.91 0.00 40.62 4.24
2320 2351 2.473760 CGAGGGACGTCATCGAGCT 61.474 63.158 28.32 3.30 38.72 4.09
2321 2352 1.989966 TTCGAGGGACGTCATCGAGC 61.990 60.000 30.77 10.93 45.23 5.03
2322 2353 0.248134 GTTCGAGGGACGTCATCGAG 60.248 60.000 30.77 16.93 45.23 4.04
2323 2354 0.675837 AGTTCGAGGGACGTCATCGA 60.676 55.000 29.82 29.82 43.19 3.59
2324 2355 0.248134 GAGTTCGAGGGACGTCATCG 60.248 60.000 27.08 27.08 43.13 3.84
2325 2356 0.100861 GGAGTTCGAGGGACGTCATC 59.899 60.000 18.91 13.48 43.13 2.92
2326 2357 1.654954 CGGAGTTCGAGGGACGTCAT 61.655 60.000 18.91 4.87 42.43 3.06
2327 2358 2.330372 CGGAGTTCGAGGGACGTCA 61.330 63.158 18.91 0.00 42.43 4.35
2328 2359 2.037136 TCGGAGTTCGAGGGACGTC 61.037 63.158 7.13 7.13 43.74 4.34
2329 2360 2.033141 TCGGAGTTCGAGGGACGT 59.967 61.111 0.00 0.00 43.74 4.34
2337 2368 2.278857 CGGCTGGATCGGAGTTCG 60.279 66.667 0.00 0.00 40.90 3.95
2338 2369 1.066587 CTCGGCTGGATCGGAGTTC 59.933 63.158 0.00 0.00 0.00 3.01
2339 2370 3.082579 GCTCGGCTGGATCGGAGTT 62.083 63.158 0.00 0.00 36.27 3.01
2340 2371 3.532155 GCTCGGCTGGATCGGAGT 61.532 66.667 0.00 0.00 36.27 3.85
2341 2372 2.303549 AAAGCTCGGCTGGATCGGAG 62.304 60.000 0.00 0.00 39.62 4.63
2342 2373 2.359169 AAAGCTCGGCTGGATCGGA 61.359 57.895 0.00 0.00 39.62 4.55
2343 2374 2.176273 CAAAGCTCGGCTGGATCGG 61.176 63.158 0.00 0.00 39.62 4.18
2344 2375 1.150567 CTCAAAGCTCGGCTGGATCG 61.151 60.000 0.00 0.00 39.62 3.69
2345 2376 0.813210 CCTCAAAGCTCGGCTGGATC 60.813 60.000 0.00 0.00 39.62 3.36
2346 2377 1.222936 CCTCAAAGCTCGGCTGGAT 59.777 57.895 0.00 0.00 39.62 3.41
2347 2378 2.665000 CCTCAAAGCTCGGCTGGA 59.335 61.111 0.00 0.94 39.62 3.86
2348 2379 2.437359 CCCTCAAAGCTCGGCTGG 60.437 66.667 0.00 0.00 39.62 4.85
2349 2380 1.449246 CTCCCTCAAAGCTCGGCTG 60.449 63.158 0.00 0.00 39.62 4.85
2350 2381 1.610673 TCTCCCTCAAAGCTCGGCT 60.611 57.895 0.00 0.00 42.56 5.52
2351 2382 1.448717 GTCTCCCTCAAAGCTCGGC 60.449 63.158 0.00 0.00 0.00 5.54
2352 2383 0.610687 AAGTCTCCCTCAAAGCTCGG 59.389 55.000 0.00 0.00 0.00 4.63
2353 2384 1.404851 GGAAGTCTCCCTCAAAGCTCG 60.405 57.143 0.00 0.00 35.42 5.03
2354 2385 1.404851 CGGAAGTCTCCCTCAAAGCTC 60.405 57.143 0.00 0.00 38.71 4.09
2355 2386 0.610687 CGGAAGTCTCCCTCAAAGCT 59.389 55.000 0.00 0.00 38.71 3.74
2356 2387 0.321996 ACGGAAGTCTCCCTCAAAGC 59.678 55.000 0.00 0.00 44.19 3.51
2384 2415 4.735132 ATCACCGTCACCACGCCG 62.735 66.667 0.00 0.00 45.29 6.46
2385 2416 2.852495 ATCATCACCGTCACCACGCC 62.852 60.000 0.00 0.00 45.29 5.68
2386 2417 1.447838 ATCATCACCGTCACCACGC 60.448 57.895 0.00 0.00 45.29 5.34
2387 2418 0.108851 TCATCATCACCGTCACCACG 60.109 55.000 0.00 0.00 46.29 4.94
2388 2419 1.935873 CATCATCATCACCGTCACCAC 59.064 52.381 0.00 0.00 0.00 4.16
2389 2420 1.743431 GCATCATCATCACCGTCACCA 60.743 52.381 0.00 0.00 0.00 4.17
2390 2421 0.940126 GCATCATCATCACCGTCACC 59.060 55.000 0.00 0.00 0.00 4.02
2391 2422 1.945387 AGCATCATCATCACCGTCAC 58.055 50.000 0.00 0.00 0.00 3.67
2392 2423 2.224042 GGTAGCATCATCATCACCGTCA 60.224 50.000 0.00 0.00 0.00 4.35
2393 2424 2.408050 GGTAGCATCATCATCACCGTC 58.592 52.381 0.00 0.00 0.00 4.79
2394 2425 1.269778 CGGTAGCATCATCATCACCGT 60.270 52.381 2.91 0.00 42.93 4.83
2395 2426 1.422388 CGGTAGCATCATCATCACCG 58.578 55.000 0.00 0.00 42.41 4.94
2396 2427 2.820059 TCGGTAGCATCATCATCACC 57.180 50.000 0.00 0.00 0.00 4.02
2397 2428 2.414481 GCATCGGTAGCATCATCATCAC 59.586 50.000 0.00 0.00 0.00 3.06
2398 2429 2.037511 TGCATCGGTAGCATCATCATCA 59.962 45.455 0.00 0.00 37.02 3.07
2399 2430 2.671888 CTGCATCGGTAGCATCATCATC 59.328 50.000 0.00 0.00 41.82 2.92
2400 2431 2.614734 CCTGCATCGGTAGCATCATCAT 60.615 50.000 0.00 0.00 41.82 2.45
2401 2432 1.270465 CCTGCATCGGTAGCATCATCA 60.270 52.381 0.00 0.00 41.82 3.07
2402 2433 1.436600 CCTGCATCGGTAGCATCATC 58.563 55.000 0.00 0.00 41.82 2.92
2403 2434 0.035881 CCCTGCATCGGTAGCATCAT 59.964 55.000 0.00 0.00 41.82 2.45
2404 2435 1.447217 CCCTGCATCGGTAGCATCA 59.553 57.895 0.00 0.00 41.82 3.07
2405 2436 1.963338 GCCCTGCATCGGTAGCATC 60.963 63.158 2.20 0.00 41.82 3.91
2406 2437 1.987807 AAGCCCTGCATCGGTAGCAT 61.988 55.000 2.20 0.00 41.82 3.79
2407 2438 2.593468 GAAGCCCTGCATCGGTAGCA 62.593 60.000 2.20 0.00 40.19 3.49
2408 2439 1.889573 GAAGCCCTGCATCGGTAGC 60.890 63.158 2.20 0.00 0.00 3.58
2409 2440 1.592669 CGAAGCCCTGCATCGGTAG 60.593 63.158 5.86 0.00 44.27 3.18
2410 2441 2.499205 CGAAGCCCTGCATCGGTA 59.501 61.111 5.86 0.00 44.27 4.02
2423 2454 1.141019 TAGCGGTGCTTAGGCGAAG 59.859 57.895 2.68 2.68 40.44 3.79
2424 2455 1.153706 GTAGCGGTGCTTAGGCGAA 60.154 57.895 0.00 0.00 40.44 4.70
2425 2456 2.493030 GTAGCGGTGCTTAGGCGA 59.507 61.111 0.00 0.00 40.44 5.54
2426 2457 2.679132 ATCGTAGCGGTGCTTAGGCG 62.679 60.000 0.00 0.00 40.44 5.52
2427 2458 0.313043 TATCGTAGCGGTGCTTAGGC 59.687 55.000 0.00 0.00 40.44 3.93
2428 2459 2.228103 TCATATCGTAGCGGTGCTTAGG 59.772 50.000 0.00 0.00 40.44 2.69
2429 2460 3.554259 TCATATCGTAGCGGTGCTTAG 57.446 47.619 0.00 0.00 40.44 2.18
2430 2461 4.092771 GATCATATCGTAGCGGTGCTTA 57.907 45.455 0.00 0.00 40.44 3.09
2431 2462 2.947852 GATCATATCGTAGCGGTGCTT 58.052 47.619 0.00 0.00 40.44 3.91
2432 2463 2.638556 GATCATATCGTAGCGGTGCT 57.361 50.000 0.00 0.00 43.41 4.40
2443 2474 6.045318 CACCATATTCCACCTCGATCATATC 58.955 44.000 0.00 0.00 0.00 1.63
2444 2475 5.104776 CCACCATATTCCACCTCGATCATAT 60.105 44.000 0.00 0.00 0.00 1.78
2445 2476 4.222810 CCACCATATTCCACCTCGATCATA 59.777 45.833 0.00 0.00 0.00 2.15
2446 2477 3.008375 CCACCATATTCCACCTCGATCAT 59.992 47.826 0.00 0.00 0.00 2.45
2447 2478 2.368548 CCACCATATTCCACCTCGATCA 59.631 50.000 0.00 0.00 0.00 2.92
2448 2479 2.632996 TCCACCATATTCCACCTCGATC 59.367 50.000 0.00 0.00 0.00 3.69
2449 2480 2.634940 CTCCACCATATTCCACCTCGAT 59.365 50.000 0.00 0.00 0.00 3.59
2450 2481 2.039418 CTCCACCATATTCCACCTCGA 58.961 52.381 0.00 0.00 0.00 4.04
2451 2482 1.070758 CCTCCACCATATTCCACCTCG 59.929 57.143 0.00 0.00 0.00 4.63
2452 2483 1.421646 CCCTCCACCATATTCCACCTC 59.578 57.143 0.00 0.00 0.00 3.85
2453 2484 1.522900 CCCTCCACCATATTCCACCT 58.477 55.000 0.00 0.00 0.00 4.00
2454 2485 0.478507 CCCCTCCACCATATTCCACC 59.521 60.000 0.00 0.00 0.00 4.61
2455 2486 0.478507 CCCCCTCCACCATATTCCAC 59.521 60.000 0.00 0.00 0.00 4.02
2456 2487 2.959201 CCCCCTCCACCATATTCCA 58.041 57.895 0.00 0.00 0.00 3.53
2473 2504 3.835790 TTAGCCGTGTGTGGTGCCC 62.836 63.158 0.00 0.00 0.00 5.36
2474 2505 2.281208 TTAGCCGTGTGTGGTGCC 60.281 61.111 0.00 0.00 0.00 5.01
2475 2506 1.291877 CTCTTAGCCGTGTGTGGTGC 61.292 60.000 0.00 0.00 0.00 5.01
2476 2507 0.317160 TCTCTTAGCCGTGTGTGGTG 59.683 55.000 0.00 0.00 0.00 4.17
2477 2508 1.204941 GATCTCTTAGCCGTGTGTGGT 59.795 52.381 0.00 0.00 0.00 4.16
2478 2509 1.204704 TGATCTCTTAGCCGTGTGTGG 59.795 52.381 0.00 0.00 0.00 4.17
2479 2510 2.654749 TGATCTCTTAGCCGTGTGTG 57.345 50.000 0.00 0.00 0.00 3.82
2480 2511 2.826128 TCTTGATCTCTTAGCCGTGTGT 59.174 45.455 0.00 0.00 0.00 3.72
2481 2512 3.129462 TCTCTTGATCTCTTAGCCGTGTG 59.871 47.826 0.00 0.00 0.00 3.82
2482 2513 3.357203 TCTCTTGATCTCTTAGCCGTGT 58.643 45.455 0.00 0.00 0.00 4.49
2483 2514 4.037327 TGATCTCTTGATCTCTTAGCCGTG 59.963 45.833 7.42 0.00 46.84 4.94
2484 2515 4.211125 TGATCTCTTGATCTCTTAGCCGT 58.789 43.478 7.42 0.00 46.84 5.68
2485 2516 4.844998 TGATCTCTTGATCTCTTAGCCG 57.155 45.455 7.42 0.00 46.84 5.52
2486 2517 6.991531 ACAATTGATCTCTTGATCTCTTAGCC 59.008 38.462 13.59 0.00 46.84 3.93
2487 2518 8.336806 CAACAATTGATCTCTTGATCTCTTAGC 58.663 37.037 13.59 0.00 46.84 3.09
2488 2519 9.381033 ACAACAATTGATCTCTTGATCTCTTAG 57.619 33.333 13.59 0.00 46.84 2.18
2489 2520 9.159364 CACAACAATTGATCTCTTGATCTCTTA 57.841 33.333 13.59 0.00 46.84 2.10
2490 2521 7.664731 ACACAACAATTGATCTCTTGATCTCTT 59.335 33.333 13.59 0.00 46.84 2.85
2491 2522 7.166851 ACACAACAATTGATCTCTTGATCTCT 58.833 34.615 13.59 0.00 46.84 3.10
2492 2523 7.333921 AGACACAACAATTGATCTCTTGATCTC 59.666 37.037 13.59 3.90 46.84 2.75
2493 2524 7.166851 AGACACAACAATTGATCTCTTGATCT 58.833 34.615 13.59 10.77 46.84 2.75
2494 2525 7.375106 AGACACAACAATTGATCTCTTGATC 57.625 36.000 13.59 8.94 46.89 2.92
2495 2526 8.316946 TCTAGACACAACAATTGATCTCTTGAT 58.683 33.333 13.59 0.34 33.73 2.57
2496 2527 7.670364 TCTAGACACAACAATTGATCTCTTGA 58.330 34.615 13.59 7.67 33.73 3.02
2497 2528 7.064371 CCTCTAGACACAACAATTGATCTCTTG 59.936 40.741 13.59 8.26 33.73 3.02
2498 2529 7.102346 CCTCTAGACACAACAATTGATCTCTT 58.898 38.462 13.59 0.00 33.73 2.85
2499 2530 6.212388 ACCTCTAGACACAACAATTGATCTCT 59.788 38.462 13.59 6.76 33.73 3.10
2500 2531 6.312426 CACCTCTAGACACAACAATTGATCTC 59.688 42.308 13.59 0.00 33.73 2.75
2501 2532 6.169094 CACCTCTAGACACAACAATTGATCT 58.831 40.000 13.59 8.89 35.16 2.75
2502 2533 5.163814 GCACCTCTAGACACAACAATTGATC 60.164 44.000 13.59 1.75 0.00 2.92
2503 2534 4.697352 GCACCTCTAGACACAACAATTGAT 59.303 41.667 13.59 0.00 0.00 2.57
2504 2535 4.065088 GCACCTCTAGACACAACAATTGA 58.935 43.478 13.59 0.00 0.00 2.57
2505 2536 3.189287 GGCACCTCTAGACACAACAATTG 59.811 47.826 3.24 3.24 0.00 2.32
2506 2537 3.412386 GGCACCTCTAGACACAACAATT 58.588 45.455 0.00 0.00 0.00 2.32
2507 2538 3.059352 GGCACCTCTAGACACAACAAT 57.941 47.619 0.00 0.00 0.00 2.71
2508 2539 2.543777 GGCACCTCTAGACACAACAA 57.456 50.000 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.