Multiple sequence alignment - TraesCS1D01G122200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G122200 chr1D 100.000 6521 0 0 928 7448 122840508 122833988 0.000000e+00 12043.0
1 TraesCS1D01G122200 chr1D 100.000 496 0 0 1 496 122841435 122840940 0.000000e+00 917.0
2 TraesCS1D01G122200 chr1D 89.816 599 52 8 6854 7448 285683720 285684313 0.000000e+00 760.0
3 TraesCS1D01G122200 chr1D 89.017 173 19 0 2505 2677 250738615 250738443 1.630000e-51 215.0
4 TraesCS1D01G122200 chr1D 84.848 66 10 0 1563 1628 61165407 61165342 4.820000e-07 67.6
5 TraesCS1D01G122200 chr1A 95.892 3067 85 11 928 3958 134963881 134960820 0.000000e+00 4927.0
6 TraesCS1D01G122200 chr1A 97.719 1929 31 6 4940 6856 134958513 134956586 0.000000e+00 3306.0
7 TraesCS1D01G122200 chr1A 97.324 299 6 1 3959 4257 134959220 134958924 2.400000e-139 507.0
8 TraesCS1D01G122200 chr1A 96.928 293 9 0 4259 4551 134958872 134958580 6.710000e-135 492.0
9 TraesCS1D01G122200 chr1A 96.507 229 5 3 4714 4940 443128091 443128318 7.060000e-100 375.0
10 TraesCS1D01G122200 chr1A 90.494 263 19 5 239 496 134964174 134963913 7.160000e-90 342.0
11 TraesCS1D01G122200 chr1A 90.526 190 18 0 1 190 134966916 134966727 1.240000e-62 252.0
12 TraesCS1D01G122200 chr1A 87.117 163 21 0 2515 2677 320892731 320892569 1.280000e-42 185.0
13 TraesCS1D01G122200 chr1A 98.795 83 1 0 4633 4715 134958581 134958499 1.670000e-31 148.0
14 TraesCS1D01G122200 chr1A 92.079 101 8 0 4541 4641 58483344 58483444 7.790000e-30 143.0
15 TraesCS1D01G122200 chr1A 100.000 34 0 0 201 234 134964264 134964231 6.240000e-06 63.9
16 TraesCS1D01G122200 chr1B 95.391 2365 58 7 985 3328 187203461 187205795 0.000000e+00 3716.0
17 TraesCS1D01G122200 chr1B 97.556 1923 35 9 4940 6856 187209278 187211194 0.000000e+00 3280.0
18 TraesCS1D01G122200 chr1B 96.811 533 16 1 3474 4006 187205794 187206325 0.000000e+00 889.0
19 TraesCS1D01G122200 chr1B 81.111 720 99 10 1816 2501 24495898 24496614 6.570000e-150 542.0
20 TraesCS1D01G122200 chr1B 99.209 253 2 0 4006 4258 187208611 187208863 2.450000e-124 457.0
21 TraesCS1D01G122200 chr1B 93.667 300 14 4 4256 4551 187208913 187209211 1.910000e-120 444.0
22 TraesCS1D01G122200 chr1B 94.690 226 10 2 4714 4937 660462394 660462169 4.280000e-92 350.0
23 TraesCS1D01G122200 chr1B 87.500 256 16 9 241 496 187202725 187202964 1.580000e-71 281.0
24 TraesCS1D01G122200 chr1B 88.439 173 20 0 2505 2677 363632627 363632799 7.570000e-50 209.0
25 TraesCS1D01G122200 chr1B 96.386 83 3 0 4633 4715 187209210 187209292 3.620000e-28 137.0
26 TraesCS1D01G122200 chr1B 85.075 67 8 2 1563 1628 184990901 184990966 4.820000e-07 67.6
27 TraesCS1D01G122200 chr1B 95.238 42 2 0 1587 1628 263051789 263051830 4.820000e-07 67.6
28 TraesCS1D01G122200 chr1B 84.848 66 10 0 1563 1628 565138778 565138843 4.820000e-07 67.6
29 TraesCS1D01G122200 chr1B 83.099 71 11 1 1559 1628 352184907 352184837 6.240000e-06 63.9
30 TraesCS1D01G122200 chr4A 90.500 600 51 5 6854 7448 33076009 33076607 0.000000e+00 787.0
31 TraesCS1D01G122200 chr4A 97.059 34 0 1 247 279 630748476 630748509 1.000000e-03 56.5
32 TraesCS1D01G122200 chr6D 90.420 595 53 2 6854 7448 337373011 337372421 0.000000e+00 780.0
33 TraesCS1D01G122200 chr6D 94.828 232 10 2 4711 4940 118635036 118635267 1.980000e-95 361.0
34 TraesCS1D01G122200 chr6D 93.886 229 13 1 4714 4941 225145737 225145509 1.990000e-90 344.0
35 TraesCS1D01G122200 chr6D 86.782 174 19 1 2504 2677 224751049 224751218 2.740000e-44 191.0
36 TraesCS1D01G122200 chr6D 85.143 175 22 3 2507 2678 370042241 370042414 7.680000e-40 176.0
37 TraesCS1D01G122200 chr6D 97.727 88 2 0 4550 4637 3274435 3274348 1.290000e-32 152.0
38 TraesCS1D01G122200 chr6D 92.857 42 3 0 1587 1628 48317405 48317364 2.240000e-05 62.1
39 TraesCS1D01G122200 chr6D 92.857 42 3 0 1587 1628 78609814 78609773 2.240000e-05 62.1
40 TraesCS1D01G122200 chr6D 92.857 42 3 0 1587 1628 123377925 123377966 2.240000e-05 62.1
41 TraesCS1D01G122200 chr6D 92.857 42 3 0 1587 1628 138917705 138917746 2.240000e-05 62.1
42 TraesCS1D01G122200 chr6D 92.857 42 3 0 1587 1628 153196471 153196512 2.240000e-05 62.1
43 TraesCS1D01G122200 chr6D 92.857 42 3 0 1587 1628 172732382 172732341 2.240000e-05 62.1
44 TraesCS1D01G122200 chr6D 92.857 42 3 0 1587 1628 356792534 356792493 2.240000e-05 62.1
45 TraesCS1D01G122200 chr6D 100.000 28 0 0 249 276 354840225 354840252 1.400000e-02 52.8
46 TraesCS1D01G122200 chr3D 90.167 600 53 5 6854 7448 5644602 5645200 0.000000e+00 776.0
47 TraesCS1D01G122200 chr3D 90.101 596 51 5 6854 7448 133665663 133666251 0.000000e+00 767.0
48 TraesCS1D01G122200 chr3D 80.945 614 87 15 2680 3277 42511533 42512132 6.810000e-125 459.0
49 TraesCS1D01G122200 chr3D 80.937 619 83 17 2678 3277 32294996 32294394 2.450000e-124 457.0
50 TraesCS1D01G122200 chr3D 93.534 232 13 2 4711 4940 529793704 529793935 1.990000e-90 344.0
51 TraesCS1D01G122200 chr3D 81.176 85 13 3 1546 1628 350409355 350409272 1.730000e-06 65.8
52 TraesCS1D01G122200 chr3D 96.875 32 1 0 1597 1628 569244475 569244444 4.000000e-03 54.7
53 TraesCS1D01G122200 chr7D 89.933 596 54 4 6854 7448 172149946 172150536 0.000000e+00 763.0
54 TraesCS1D01G122200 chr7D 88.136 177 20 1 2502 2677 312466906 312467082 7.570000e-50 209.0
55 TraesCS1D01G122200 chr7D 84.884 172 25 1 2506 2677 102548123 102548293 9.940000e-39 172.0
56 TraesCS1D01G122200 chr4D 89.916 595 56 2 6854 7448 77835998 77836588 0.000000e+00 763.0
57 TraesCS1D01G122200 chr4D 94.068 236 11 3 4711 4943 43295026 43295261 9.190000e-94 355.0
58 TraesCS1D01G122200 chr4D 86.310 168 13 3 2510 2677 189696049 189695892 2.760000e-39 174.0
59 TraesCS1D01G122200 chr4D 91.089 101 9 0 2505 2605 281182333 281182433 3.620000e-28 137.0
60 TraesCS1D01G122200 chr4D 85.246 61 9 0 1568 1628 351457998 351457938 6.240000e-06 63.9
61 TraesCS1D01G122200 chr4D 91.304 46 3 1 1584 1628 249499801 249499846 2.240000e-05 62.1
62 TraesCS1D01G122200 chr4D 91.304 46 3 1 1584 1628 272899323 272899278 2.240000e-05 62.1
63 TraesCS1D01G122200 chr4D 83.333 66 11 0 1563 1628 355155067 355155132 2.240000e-05 62.1
64 TraesCS1D01G122200 chr2D 89.916 595 56 3 6854 7448 196974650 196974060 0.000000e+00 763.0
65 TraesCS1D01G122200 chr2D 89.933 596 54 4 6854 7448 301920693 301921283 0.000000e+00 763.0
66 TraesCS1D01G122200 chr2D 90.857 175 16 0 2504 2678 342099806 342099632 1.250000e-57 235.0
67 TraesCS1D01G122200 chr2D 77.778 252 36 13 3420 3661 386705488 386705247 3.620000e-28 137.0
68 TraesCS1D01G122200 chr5D 83.333 594 80 12 1919 2501 7565037 7565622 1.420000e-146 531.0
69 TraesCS1D01G122200 chr5D 82.730 608 78 11 1919 2501 198488682 198489287 3.980000e-142 516.0
70 TraesCS1D01G122200 chr5D 82.010 617 76 16 2680 3277 198489284 198489884 6.710000e-135 492.0
71 TraesCS1D01G122200 chr5D 88.757 169 18 1 2504 2671 13715040 13715208 9.800000e-49 206.0
72 TraesCS1D01G122200 chr5D 94.737 95 3 2 4541 4634 56448554 56448461 6.020000e-31 147.0
73 TraesCS1D01G122200 chr5D 93.814 97 5 1 4546 4642 297738429 297738334 2.170000e-30 145.0
74 TraesCS1D01G122200 chr5D 83.582 67 9 2 1563 1628 58862991 58863056 2.240000e-05 62.1
75 TraesCS1D01G122200 chr5D 92.857 42 3 0 1587 1628 174012087 174012046 2.240000e-05 62.1
76 TraesCS1D01G122200 chr5B 82.566 608 79 9 1919 2501 386366777 386366172 1.850000e-140 510.0
77 TraesCS1D01G122200 chr5B 80.139 720 104 14 1816 2501 483942882 483942168 1.120000e-137 501.0
78 TraesCS1D01G122200 chr5B 82.072 608 82 9 1919 2501 383487396 383486791 1.870000e-135 494.0
79 TraesCS1D01G122200 chr5B 81.361 617 79 17 2680 3277 383486794 383486195 3.150000e-128 470.0
80 TraesCS1D01G122200 chr5B 81.422 619 75 17 2680 3277 386366175 386365576 3.150000e-128 470.0
81 TraesCS1D01G122200 chr5B 81.230 618 80 18 2680 3277 483942171 483941570 4.070000e-127 466.0
82 TraesCS1D01G122200 chr5B 95.455 88 4 0 4550 4637 477498430 477498517 2.800000e-29 141.0
83 TraesCS1D01G122200 chr6B 82.459 610 76 16 1919 2501 393751418 393750813 8.620000e-139 505.0
84 TraesCS1D01G122200 chr6B 81.452 620 78 18 2678 3277 393750818 393750216 2.430000e-129 473.0
85 TraesCS1D01G122200 chr6B 87.429 175 18 3 2507 2678 555341823 555341996 1.640000e-46 198.0
86 TraesCS1D01G122200 chr6B 93.878 98 6 0 4549 4646 62536737 62536834 1.670000e-31 148.0
87 TraesCS1D01G122200 chr6B 88.785 107 11 1 4550 4656 91307317 91307422 6.060000e-26 130.0
88 TraesCS1D01G122200 chr5A 81.619 593 81 9 1919 2501 5289583 5290157 4.070000e-127 466.0
89 TraesCS1D01G122200 chr5A 90.000 70 7 0 1545 1614 451487180 451487249 2.860000e-14 91.6
90 TraesCS1D01G122200 chr7B 82.176 533 67 12 2678 3194 100670709 100670189 4.130000e-117 433.0
91 TraesCS1D01G122200 chr7B 86.517 178 22 2 2502 2678 303719508 303719684 2.120000e-45 195.0
92 TraesCS1D01G122200 chr7B 93.939 99 4 1 4538 4634 66196607 66196705 1.670000e-31 148.0
93 TraesCS1D01G122200 chr7B 84.211 95 15 0 1534 1628 27063238 27063332 7.960000e-15 93.5
94 TraesCS1D01G122200 chr7B 94.286 35 2 0 245 279 282582945 282582911 4.000000e-03 54.7
95 TraesCS1D01G122200 chr3B 95.197 229 9 2 4714 4940 648916031 648915803 1.980000e-95 361.0
96 TraesCS1D01G122200 chr3B 86.885 61 6 2 1569 1628 128495824 128495765 4.820000e-07 67.6
97 TraesCS1D01G122200 chr6A 84.021 388 45 4 2680 3059 212391501 212391123 2.560000e-94 357.0
98 TraesCS1D01G122200 chr6A 83.077 195 33 0 1919 2113 212408686 212408492 2.140000e-40 178.0
99 TraesCS1D01G122200 chr6A 85.938 64 5 3 4594 4657 146529525 146529466 1.730000e-06 65.8
100 TraesCS1D01G122200 chr6A 100.000 28 0 0 249 276 486966023 486965996 1.400000e-02 52.8
101 TraesCS1D01G122200 chr7A 94.397 232 11 2 4711 4940 585049868 585050099 9.190000e-94 355.0
102 TraesCS1D01G122200 chr2A 94.273 227 11 2 4714 4938 324607806 324607580 5.530000e-91 346.0
103 TraesCS1D01G122200 chr2A 88.333 180 17 1 2504 2679 155591083 155590904 5.850000e-51 213.0
104 TraesCS1D01G122200 chr2A 96.774 93 2 1 4545 4637 10843303 10843212 3.600000e-33 154.0
105 TraesCS1D01G122200 chr4B 88.439 173 20 0 2505 2677 285616731 285616559 7.570000e-50 209.0
106 TraesCS1D01G122200 chr4B 85.057 174 18 1 2504 2677 339266304 339266469 3.570000e-38 171.0
107 TraesCS1D01G122200 chr4B 83.582 67 9 2 1563 1628 131940311 131940376 2.240000e-05 62.1
108 TraesCS1D01G122200 chr2B 96.667 90 3 0 4546 4635 46846078 46846167 4.660000e-32 150.0
109 TraesCS1D01G122200 chrUn 89.583 48 5 0 1581 1628 67785053 67785100 2.240000e-05 62.1
110 TraesCS1D01G122200 chrUn 92.857 42 3 0 1587 1628 220172596 220172555 2.240000e-05 62.1
111 TraesCS1D01G122200 chrUn 94.595 37 2 0 1592 1628 235812527 235812563 2.900000e-04 58.4
112 TraesCS1D01G122200 chrUn 94.595 37 2 0 1592 1628 382475448 382475412 2.900000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G122200 chr1D 122833988 122841435 7447 True 6480.000000 12043 100.000000 1 7448 2 chr1D.!!$R3 7447
1 TraesCS1D01G122200 chr1D 285683720 285684313 593 False 760.000000 760 89.816000 6854 7448 1 chr1D.!!$F1 594
2 TraesCS1D01G122200 chr1A 134956586 134966916 10330 True 1254.737500 4927 95.959750 1 6856 8 chr1A.!!$R2 6855
3 TraesCS1D01G122200 chr1B 187202725 187211194 8469 False 1314.857143 3716 95.217143 241 6856 7 chr1B.!!$F6 6615
4 TraesCS1D01G122200 chr1B 24495898 24496614 716 False 542.000000 542 81.111000 1816 2501 1 chr1B.!!$F1 685
5 TraesCS1D01G122200 chr4A 33076009 33076607 598 False 787.000000 787 90.500000 6854 7448 1 chr4A.!!$F1 594
6 TraesCS1D01G122200 chr6D 337372421 337373011 590 True 780.000000 780 90.420000 6854 7448 1 chr6D.!!$R6 594
7 TraesCS1D01G122200 chr3D 5644602 5645200 598 False 776.000000 776 90.167000 6854 7448 1 chr3D.!!$F1 594
8 TraesCS1D01G122200 chr3D 133665663 133666251 588 False 767.000000 767 90.101000 6854 7448 1 chr3D.!!$F3 594
9 TraesCS1D01G122200 chr3D 42511533 42512132 599 False 459.000000 459 80.945000 2680 3277 1 chr3D.!!$F2 597
10 TraesCS1D01G122200 chr3D 32294394 32294996 602 True 457.000000 457 80.937000 2678 3277 1 chr3D.!!$R1 599
11 TraesCS1D01G122200 chr7D 172149946 172150536 590 False 763.000000 763 89.933000 6854 7448 1 chr7D.!!$F2 594
12 TraesCS1D01G122200 chr4D 77835998 77836588 590 False 763.000000 763 89.916000 6854 7448 1 chr4D.!!$F2 594
13 TraesCS1D01G122200 chr2D 196974060 196974650 590 True 763.000000 763 89.916000 6854 7448 1 chr2D.!!$R1 594
14 TraesCS1D01G122200 chr2D 301920693 301921283 590 False 763.000000 763 89.933000 6854 7448 1 chr2D.!!$F1 594
15 TraesCS1D01G122200 chr5D 7565037 7565622 585 False 531.000000 531 83.333000 1919 2501 1 chr5D.!!$F1 582
16 TraesCS1D01G122200 chr5D 198488682 198489884 1202 False 504.000000 516 82.370000 1919 3277 2 chr5D.!!$F4 1358
17 TraesCS1D01G122200 chr5B 386365576 386366777 1201 True 490.000000 510 81.994000 1919 3277 2 chr5B.!!$R2 1358
18 TraesCS1D01G122200 chr5B 483941570 483942882 1312 True 483.500000 501 80.684500 1816 3277 2 chr5B.!!$R3 1461
19 TraesCS1D01G122200 chr5B 383486195 383487396 1201 True 482.000000 494 81.716500 1919 3277 2 chr5B.!!$R1 1358
20 TraesCS1D01G122200 chr6B 393750216 393751418 1202 True 489.000000 505 81.955500 1919 3277 2 chr6B.!!$R1 1358
21 TraesCS1D01G122200 chr5A 5289583 5290157 574 False 466.000000 466 81.619000 1919 2501 1 chr5A.!!$F1 582
22 TraesCS1D01G122200 chr7B 100670189 100670709 520 True 433.000000 433 82.176000 2678 3194 1 chr7B.!!$R1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 149 0.687354 ACGAGGATGTGGCTTCACTT 59.313 50.0 0.00 0.0 41.73 3.16 F
1523 4050 0.107703 TGCGCTTAAGCATGCCTAGT 60.108 50.0 26.29 0.0 42.92 2.57 F
2762 5363 0.439985 CGAAGCATTGTCGGTCACAG 59.560 55.0 0.00 0.0 35.97 3.66 F
4009 10521 0.036732 TACTCGCCGTATCCCCGTAT 59.963 55.0 0.00 0.0 0.00 3.06 F
4748 11316 0.029035 GCCATCGCTGAATGAGCTTG 59.971 55.0 0.00 0.0 46.64 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 4603 0.039256 GCTTTTGGCAATGTCGAGCA 60.039 50.000 0.00 0.00 41.35 4.26 R
3363 5982 0.388649 GGGATACTGCAGGATACGCG 60.389 60.000 19.93 3.53 46.39 6.01 R
4715 11283 0.107703 GATGGCCTCACATGGTCGAA 60.108 55.000 3.32 0.00 33.69 3.71 R
4832 11400 0.681733 GCCAACAGAGACTCAGTGGA 59.318 55.000 18.38 0.00 0.00 4.02 R
6490 13066 2.625737 ACAATTCATCCACAGAGAGCG 58.374 47.619 0.00 0.00 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.901081 ATTCTTTTGGGTTTTCTAGAGTGG 57.099 37.500 0.00 0.00 0.00 4.00
62 63 5.049543 GTGGAAGCATAATCAGATTCTCAGC 60.050 44.000 0.00 0.34 32.34 4.26
76 77 6.801377 CAGATTCTCAGCTAGTGATCGATTAC 59.199 42.308 12.14 12.14 33.51 1.89
106 107 2.283298 CAAATGAGATGGTGGGACTCG 58.717 52.381 0.00 0.00 33.93 4.18
107 108 1.866015 AATGAGATGGTGGGACTCGA 58.134 50.000 0.00 0.00 33.93 4.04
112 113 1.690219 GATGGTGGGACTCGATGGCT 61.690 60.000 0.00 0.00 0.00 4.75
113 114 1.976132 ATGGTGGGACTCGATGGCTG 61.976 60.000 0.00 0.00 0.00 4.85
116 117 2.369633 TGGGACTCGATGGCTGCAT 61.370 57.895 0.50 0.00 0.00 3.96
148 149 0.687354 ACGAGGATGTGGCTTCACTT 59.313 50.000 0.00 0.00 41.73 3.16
255 2761 7.924103 AGAATGTTCCATAACGTTTTTCAAC 57.076 32.000 5.91 6.05 43.33 3.18
289 2795 3.356814 AAAAATGTGGGACGGAGGG 57.643 52.632 0.00 0.00 0.00 4.30
290 2796 0.774908 AAAAATGTGGGACGGAGGGA 59.225 50.000 0.00 0.00 0.00 4.20
293 2799 1.265454 AATGTGGGACGGAGGGAGTC 61.265 60.000 0.00 0.00 37.86 3.36
298 2804 1.687297 GGGACGGAGGGAGTCATTCC 61.687 65.000 0.00 0.00 46.00 3.01
309 2815 6.768381 GGAGGGAGTCATTCCTATTTAGTTTG 59.232 42.308 5.20 0.00 45.98 2.93
311 2817 7.569240 AGGGAGTCATTCCTATTTAGTTTGAG 58.431 38.462 0.00 0.00 45.98 3.02
313 2819 7.281100 GGGAGTCATTCCTATTTAGTTTGAGTG 59.719 40.741 0.00 0.00 45.98 3.51
316 2824 9.793259 AGTCATTCCTATTTAGTTTGAGTGAAA 57.207 29.630 0.00 0.00 0.00 2.69
333 2843 5.886960 GTGAAACTACTCATGATGCCTTT 57.113 39.130 0.00 0.00 0.00 3.11
337 2847 4.851639 ACTACTCATGATGCCTTTCCTT 57.148 40.909 0.00 0.00 0.00 3.36
394 2904 6.381707 TGTTAGGCATACATCTGGTACTTGTA 59.618 38.462 0.00 0.00 34.07 2.41
946 3456 2.967076 CGCCCCCATCAATCGTCG 60.967 66.667 0.00 0.00 0.00 5.12
951 3461 2.967076 CCATCAATCGTCGGGCCG 60.967 66.667 22.51 22.51 0.00 6.13
1076 3594 1.347707 ACGGAAAGGCATGAAGAGTCA 59.652 47.619 0.00 0.00 38.41 3.41
1193 3711 1.202582 GAGCTGTCGAAGTAGCCTTCA 59.797 52.381 12.35 0.00 46.19 3.02
1317 3843 5.534654 TGCTGCCTAACATCTTGTTAAAAGT 59.465 36.000 0.00 0.00 41.70 2.66
1428 3955 5.341617 GGAAGTAGAGATGGTTACTCGTTG 58.658 45.833 0.00 0.00 39.12 4.10
1523 4050 0.107703 TGCGCTTAAGCATGCCTAGT 60.108 50.000 26.29 0.00 42.92 2.57
1524 4051 1.017387 GCGCTTAAGCATGCCTAGTT 58.983 50.000 26.29 4.43 42.21 2.24
1579 4106 1.218047 CTAGGCGTGTGCTTAGGCA 59.782 57.895 0.00 0.00 44.61 4.75
1876 4429 6.564709 TGTCTTGAGTGATTTCATTTCCAG 57.435 37.500 0.00 0.00 0.00 3.86
1953 4514 3.701040 TCATCTGCATAGCTGTAGTGTGA 59.299 43.478 0.00 0.00 36.57 3.58
2042 4603 3.499918 GGCTAGCGCATCTTTGTAATGAT 59.500 43.478 11.47 0.00 38.10 2.45
2230 4791 5.900865 TCAGAATGATTGCTGTTGCATTA 57.099 34.783 0.00 0.00 45.29 1.90
2281 4872 3.493350 CGAGGATACCACCATCTTCCTTG 60.493 52.174 0.00 0.00 36.95 3.61
2568 5169 2.283529 CGCTACTGGGTGGGTCACT 61.284 63.158 0.00 0.00 34.40 3.41
2575 5176 1.909302 CTGGGTGGGTCACTGAATAGT 59.091 52.381 0.00 0.00 37.75 2.12
2671 5272 5.009710 TGGTACCAGTTAGCGATATCTTGAG 59.990 44.000 11.60 0.00 0.00 3.02
2762 5363 0.439985 CGAAGCATTGTCGGTCACAG 59.560 55.000 0.00 0.00 35.97 3.66
2911 5512 3.291585 GAACAATGTGTGAGCAGTTTCG 58.708 45.455 0.00 0.00 0.00 3.46
3103 5714 1.211457 GGCCTCAACCATCTGTCTGAT 59.789 52.381 0.00 0.00 35.40 2.90
3252 5871 3.947196 TCATACACCCATCTTGCAATGTC 59.053 43.478 0.00 0.00 0.00 3.06
3321 5940 0.981183 ACTGCCAAATCGGTGTCCTA 59.019 50.000 0.00 0.00 36.97 2.94
3363 5982 2.106332 CCGGACACGCTGGGATAC 59.894 66.667 0.00 0.00 39.56 2.24
3391 6010 3.117888 TCCTGCAGTATCCCCTCATTTTC 60.118 47.826 13.81 0.00 0.00 2.29
3435 6054 3.708236 ATAGGGATACGGCTGGGATAT 57.292 47.619 0.00 0.00 37.60 1.63
3437 6056 1.203313 AGGGATACGGCTGGGATATGT 60.203 52.381 0.00 0.00 37.60 2.29
3462 6081 1.221840 CATGTTGGGGACTCGGGAG 59.778 63.158 0.00 0.00 0.00 4.30
3545 6164 2.265739 CAGGCTCCAGCTAACGCA 59.734 61.111 0.00 0.00 41.70 5.24
3553 6178 4.379243 AGCTAACGCACTGCCGCT 62.379 61.111 0.00 0.00 39.10 5.52
3574 6199 2.431683 GCCACTGCCTGGACTTGA 59.568 61.111 0.00 0.00 43.95 3.02
3579 6204 3.241530 TGCCTGGACTTGACCGCT 61.242 61.111 0.00 0.00 0.00 5.52
3704 6329 2.230508 CTCTTTGCAGCCATGATGTTGT 59.769 45.455 0.00 0.00 0.00 3.32
3764 6389 2.415090 GCTGCTGCTTAGTGTTGATTGG 60.415 50.000 8.53 0.00 36.03 3.16
3770 6395 3.636300 TGCTTAGTGTTGATTGGTGCTTT 59.364 39.130 0.00 0.00 0.00 3.51
3831 6456 7.352739 CGGTAGCCAATTAAGTGATGTATTTC 58.647 38.462 4.10 0.00 0.00 2.17
3973 8197 6.683974 AACTCTGTATTACATGGCATGTTC 57.316 37.500 35.36 22.54 41.63 3.18
4009 10521 0.036732 TACTCGCCGTATCCCCGTAT 59.963 55.000 0.00 0.00 0.00 3.06
4010 10522 0.036732 ACTCGCCGTATCCCCGTATA 59.963 55.000 0.00 0.00 0.00 1.47
4074 10586 3.681835 GCCGTGTCCGTGTCTCCT 61.682 66.667 0.00 0.00 0.00 3.69
4273 10837 7.116376 CACTTAAGTTACAACGTGATGACATCT 59.884 37.037 16.25 0.00 0.00 2.90
4388 10956 7.573710 TCATCATTTAATAACCCTACTGCACT 58.426 34.615 0.00 0.00 0.00 4.40
4402 10970 3.067106 ACTGCACTACCAAGAATTGTCG 58.933 45.455 0.00 0.00 46.99 4.35
4553 11121 4.202245 TGTTGGGCACAGTAAGATACTC 57.798 45.455 0.00 0.00 36.76 2.59
4554 11122 3.055385 TGTTGGGCACAGTAAGATACTCC 60.055 47.826 0.00 0.00 36.76 3.85
4555 11123 2.116238 TGGGCACAGTAAGATACTCCC 58.884 52.381 0.00 6.04 39.56 4.30
4556 11124 2.292918 TGGGCACAGTAAGATACTCCCT 60.293 50.000 11.77 0.00 39.73 4.20
4557 11125 2.365941 GGGCACAGTAAGATACTCCCTC 59.634 54.545 5.83 0.00 37.37 4.30
4558 11126 2.365941 GGCACAGTAAGATACTCCCTCC 59.634 54.545 0.00 0.00 36.76 4.30
4559 11127 2.034812 GCACAGTAAGATACTCCCTCCG 59.965 54.545 0.00 0.00 36.76 4.63
4560 11128 3.288964 CACAGTAAGATACTCCCTCCGT 58.711 50.000 0.00 0.00 36.76 4.69
4561 11129 3.315749 CACAGTAAGATACTCCCTCCGTC 59.684 52.174 0.00 0.00 36.76 4.79
4562 11130 2.885894 CAGTAAGATACTCCCTCCGTCC 59.114 54.545 0.00 0.00 36.76 4.79
4563 11131 2.158490 AGTAAGATACTCCCTCCGTCCC 60.158 54.545 0.00 0.00 32.47 4.46
4564 11132 0.635009 AAGATACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
4565 11133 0.861155 AGATACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
4566 11134 2.071372 AGATACTCCCTCCGTCCCATA 58.929 52.381 0.00 0.00 0.00 2.74
4567 11135 2.449730 AGATACTCCCTCCGTCCCATAA 59.550 50.000 0.00 0.00 0.00 1.90
4568 11136 3.077695 AGATACTCCCTCCGTCCCATAAT 59.922 47.826 0.00 0.00 0.00 1.28
4569 11137 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
4570 11138 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
4571 11139 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
4572 11140 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
4573 11141 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
4574 11142 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
4575 11143 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
4577 11145 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
4578 11146 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
4579 11147 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
4580 11148 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
4581 11149 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
4626 11194 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
4627 11195 3.378339 CGTCTTACATTATGGGACGGAC 58.622 50.000 20.50 10.60 43.69 4.79
4628 11196 3.378339 GTCTTACATTATGGGACGGACG 58.622 50.000 0.00 0.00 0.00 4.79
4629 11197 2.363038 TCTTACATTATGGGACGGACGG 59.637 50.000 0.00 0.00 0.00 4.79
4630 11198 2.070305 TACATTATGGGACGGACGGA 57.930 50.000 0.00 0.00 0.00 4.69
4631 11199 0.750850 ACATTATGGGACGGACGGAG 59.249 55.000 0.00 0.00 0.00 4.63
4730 11298 1.464997 GTCTTTTCGACCATGTGAGGC 59.535 52.381 0.00 0.00 36.62 4.70
4731 11299 0.804989 CTTTTCGACCATGTGAGGCC 59.195 55.000 0.00 0.00 0.00 5.19
4732 11300 0.109532 TTTTCGACCATGTGAGGCCA 59.890 50.000 5.01 0.00 0.00 5.36
4733 11301 0.327924 TTTCGACCATGTGAGGCCAT 59.672 50.000 5.01 0.00 0.00 4.40
4734 11302 0.107703 TTCGACCATGTGAGGCCATC 60.108 55.000 5.01 0.00 0.00 3.51
4735 11303 1.884464 CGACCATGTGAGGCCATCG 60.884 63.158 5.01 0.00 0.00 3.84
4736 11304 2.124570 ACCATGTGAGGCCATCGC 60.125 61.111 5.01 7.18 39.00 4.58
4737 11305 2.191375 CCATGTGAGGCCATCGCT 59.809 61.111 5.01 0.00 39.31 4.93
4738 11306 2.184830 CCATGTGAGGCCATCGCTG 61.185 63.158 5.01 6.83 39.31 5.18
4739 11307 1.153309 CATGTGAGGCCATCGCTGA 60.153 57.895 5.01 0.00 39.31 4.26
4740 11308 0.745486 CATGTGAGGCCATCGCTGAA 60.745 55.000 5.01 0.00 39.31 3.02
4741 11309 0.182061 ATGTGAGGCCATCGCTGAAT 59.818 50.000 5.01 0.00 39.31 2.57
4742 11310 0.745486 TGTGAGGCCATCGCTGAATG 60.745 55.000 5.01 0.00 39.31 2.67
4743 11311 0.462581 GTGAGGCCATCGCTGAATGA 60.463 55.000 5.01 0.00 35.43 2.57
4744 11312 0.179065 TGAGGCCATCGCTGAATGAG 60.179 55.000 5.01 0.00 34.44 2.90
4745 11313 1.505477 GAGGCCATCGCTGAATGAGC 61.505 60.000 5.01 0.00 45.20 4.26
4746 11314 1.525535 GGCCATCGCTGAATGAGCT 60.526 57.895 0.00 0.00 46.64 4.09
4747 11315 1.099879 GGCCATCGCTGAATGAGCTT 61.100 55.000 0.00 0.00 46.64 3.74
4748 11316 0.029035 GCCATCGCTGAATGAGCTTG 59.971 55.000 0.00 0.00 46.64 4.01
4749 11317 1.376543 CCATCGCTGAATGAGCTTGT 58.623 50.000 0.00 0.00 46.64 3.16
4750 11318 2.554142 CCATCGCTGAATGAGCTTGTA 58.446 47.619 0.00 0.00 46.64 2.41
4751 11319 2.543012 CCATCGCTGAATGAGCTTGTAG 59.457 50.000 0.00 0.00 46.64 2.74
4752 11320 3.451526 CATCGCTGAATGAGCTTGTAGA 58.548 45.455 0.00 0.00 46.64 2.59
4753 11321 2.881074 TCGCTGAATGAGCTTGTAGAC 58.119 47.619 0.00 0.00 46.64 2.59
4754 11322 2.231235 TCGCTGAATGAGCTTGTAGACA 59.769 45.455 0.00 0.00 46.64 3.41
4755 11323 2.602211 CGCTGAATGAGCTTGTAGACAG 59.398 50.000 0.00 0.00 46.64 3.51
4756 11324 2.935201 GCTGAATGAGCTTGTAGACAGG 59.065 50.000 0.00 0.00 45.21 4.00
4757 11325 3.368843 GCTGAATGAGCTTGTAGACAGGA 60.369 47.826 0.00 0.00 45.21 3.86
4758 11326 4.682859 GCTGAATGAGCTTGTAGACAGGAT 60.683 45.833 0.00 0.00 45.21 3.24
4759 11327 5.426504 CTGAATGAGCTTGTAGACAGGATT 58.573 41.667 0.00 0.00 0.00 3.01
4760 11328 6.544928 TGAATGAGCTTGTAGACAGGATTA 57.455 37.500 0.00 0.00 0.00 1.75
4761 11329 6.946340 TGAATGAGCTTGTAGACAGGATTAA 58.054 36.000 0.00 0.00 0.00 1.40
4762 11330 7.394016 TGAATGAGCTTGTAGACAGGATTAAA 58.606 34.615 0.00 0.00 0.00 1.52
4763 11331 7.550551 TGAATGAGCTTGTAGACAGGATTAAAG 59.449 37.037 0.00 0.00 0.00 1.85
4764 11332 6.605471 TGAGCTTGTAGACAGGATTAAAGA 57.395 37.500 0.00 0.00 0.00 2.52
4765 11333 6.398918 TGAGCTTGTAGACAGGATTAAAGAC 58.601 40.000 0.00 0.00 0.00 3.01
4766 11334 5.411781 AGCTTGTAGACAGGATTAAAGACG 58.588 41.667 0.00 0.00 0.00 4.18
4767 11335 5.185249 AGCTTGTAGACAGGATTAAAGACGA 59.815 40.000 0.00 0.00 0.00 4.20
4768 11336 5.517054 GCTTGTAGACAGGATTAAAGACGAG 59.483 44.000 0.00 0.00 0.00 4.18
4769 11337 6.625300 GCTTGTAGACAGGATTAAAGACGAGA 60.625 42.308 0.00 0.00 0.00 4.04
4770 11338 6.192234 TGTAGACAGGATTAAAGACGAGAC 57.808 41.667 0.00 0.00 0.00 3.36
4771 11339 5.944599 TGTAGACAGGATTAAAGACGAGACT 59.055 40.000 0.00 0.00 0.00 3.24
4772 11340 5.570234 AGACAGGATTAAAGACGAGACTC 57.430 43.478 0.00 0.00 0.00 3.36
4773 11341 4.095185 AGACAGGATTAAAGACGAGACTCG 59.905 45.833 22.97 22.97 46.93 4.18
4774 11342 4.008330 ACAGGATTAAAGACGAGACTCGA 58.992 43.478 30.56 8.02 43.74 4.04
4775 11343 4.641094 ACAGGATTAAAGACGAGACTCGAT 59.359 41.667 30.56 15.72 43.74 3.59
4776 11344 4.973051 CAGGATTAAAGACGAGACTCGATG 59.027 45.833 30.56 2.96 43.74 3.84
4777 11345 4.641094 AGGATTAAAGACGAGACTCGATGT 59.359 41.667 30.56 15.73 43.74 3.06
4778 11346 5.125739 AGGATTAAAGACGAGACTCGATGTT 59.874 40.000 30.56 20.34 43.74 2.71
4779 11347 5.230306 GGATTAAAGACGAGACTCGATGTTG 59.770 44.000 30.56 1.40 43.74 3.33
4780 11348 2.638556 AAGACGAGACTCGATGTTGG 57.361 50.000 30.56 0.64 43.74 3.77
4781 11349 0.811915 AGACGAGACTCGATGTTGGG 59.188 55.000 30.56 0.00 43.74 4.12
4782 11350 0.802607 GACGAGACTCGATGTTGGGC 60.803 60.000 30.56 0.00 43.74 5.36
4783 11351 1.215382 CGAGACTCGATGTTGGGCA 59.785 57.895 20.25 0.00 43.74 5.36
4784 11352 0.389817 CGAGACTCGATGTTGGGCAA 60.390 55.000 20.25 0.00 43.74 4.52
4785 11353 1.808411 GAGACTCGATGTTGGGCAAA 58.192 50.000 0.00 0.00 0.00 3.68
4786 11354 1.734465 GAGACTCGATGTTGGGCAAAG 59.266 52.381 0.00 0.00 0.00 2.77
4787 11355 0.804989 GACTCGATGTTGGGCAAAGG 59.195 55.000 0.00 0.00 0.00 3.11
4788 11356 1.244019 ACTCGATGTTGGGCAAAGGC 61.244 55.000 0.00 0.00 40.13 4.35
4799 11367 3.064324 CAAAGGCCGGGGCTCAAG 61.064 66.667 24.62 12.57 37.50 3.02
4800 11368 4.366684 AAAGGCCGGGGCTCAAGG 62.367 66.667 24.62 0.00 37.50 3.61
4806 11374 4.479993 CGGGGCTCAAGGGCTCAG 62.480 72.222 0.00 0.00 41.58 3.35
4807 11375 4.120755 GGGGCTCAAGGGCTCAGG 62.121 72.222 0.00 0.00 41.10 3.86
4808 11376 4.120755 GGGCTCAAGGGCTCAGGG 62.121 72.222 0.00 0.00 40.65 4.45
4809 11377 3.334054 GGCTCAAGGGCTCAGGGT 61.334 66.667 0.00 0.00 37.53 4.34
4810 11378 2.045536 GCTCAAGGGCTCAGGGTG 60.046 66.667 0.00 0.00 0.00 4.61
4811 11379 2.900106 GCTCAAGGGCTCAGGGTGT 61.900 63.158 0.00 0.00 0.00 4.16
4812 11380 1.763770 CTCAAGGGCTCAGGGTGTT 59.236 57.895 0.00 0.00 0.00 3.32
4813 11381 0.111253 CTCAAGGGCTCAGGGTGTTT 59.889 55.000 0.00 0.00 0.00 2.83
4814 11382 0.555769 TCAAGGGCTCAGGGTGTTTT 59.444 50.000 0.00 0.00 0.00 2.43
4815 11383 0.675633 CAAGGGCTCAGGGTGTTTTG 59.324 55.000 0.00 0.00 0.00 2.44
4816 11384 1.115326 AAGGGCTCAGGGTGTTTTGC 61.115 55.000 0.00 0.00 0.00 3.68
4817 11385 2.574018 GGGCTCAGGGTGTTTTGCC 61.574 63.158 0.00 0.00 39.61 4.52
4818 11386 1.832167 GGCTCAGGGTGTTTTGCCA 60.832 57.895 0.00 0.00 40.04 4.92
4819 11387 1.187567 GGCTCAGGGTGTTTTGCCAT 61.188 55.000 0.00 0.00 40.04 4.40
4820 11388 0.244721 GCTCAGGGTGTTTTGCCATC 59.755 55.000 0.00 0.00 0.00 3.51
4821 11389 1.619654 CTCAGGGTGTTTTGCCATCA 58.380 50.000 0.00 0.00 0.00 3.07
4822 11390 2.173519 CTCAGGGTGTTTTGCCATCAT 58.826 47.619 0.00 0.00 0.00 2.45
4823 11391 2.165030 CTCAGGGTGTTTTGCCATCATC 59.835 50.000 0.00 0.00 0.00 2.92
4824 11392 1.205417 CAGGGTGTTTTGCCATCATCC 59.795 52.381 0.00 0.00 33.03 3.51
4825 11393 1.077663 AGGGTGTTTTGCCATCATCCT 59.922 47.619 0.00 0.00 37.80 3.24
4826 11394 1.205417 GGGTGTTTTGCCATCATCCTG 59.795 52.381 0.00 0.00 30.51 3.86
4827 11395 1.205417 GGTGTTTTGCCATCATCCTGG 59.795 52.381 0.00 0.00 39.45 4.45
4828 11396 1.205417 GTGTTTTGCCATCATCCTGGG 59.795 52.381 0.00 0.00 36.75 4.45
4829 11397 1.076841 TGTTTTGCCATCATCCTGGGA 59.923 47.619 0.00 0.00 36.75 4.37
4830 11398 2.292389 TGTTTTGCCATCATCCTGGGAT 60.292 45.455 0.00 0.00 36.43 3.85
4838 11406 3.794737 CATCCTGGGATGTCCACTG 57.205 57.895 18.55 0.00 44.93 3.66
4839 11407 1.206878 CATCCTGGGATGTCCACTGA 58.793 55.000 18.55 0.00 44.93 3.41
4840 11408 1.140452 CATCCTGGGATGTCCACTGAG 59.860 57.143 18.55 0.00 44.93 3.35
4841 11409 0.117140 TCCTGGGATGTCCACTGAGT 59.883 55.000 0.86 0.00 41.46 3.41
4842 11410 0.539051 CCTGGGATGTCCACTGAGTC 59.461 60.000 0.86 0.00 41.46 3.36
4843 11411 1.566211 CTGGGATGTCCACTGAGTCT 58.434 55.000 0.86 0.00 41.46 3.24
4844 11412 1.480137 CTGGGATGTCCACTGAGTCTC 59.520 57.143 0.86 0.00 41.46 3.36
4845 11413 1.077828 TGGGATGTCCACTGAGTCTCT 59.922 52.381 0.65 0.00 41.46 3.10
4846 11414 1.480137 GGGATGTCCACTGAGTCTCTG 59.520 57.143 5.26 5.26 37.91 3.35
4847 11415 2.175202 GGATGTCCACTGAGTCTCTGT 58.825 52.381 6.56 6.56 35.64 3.41
4848 11416 2.564947 GGATGTCCACTGAGTCTCTGTT 59.435 50.000 9.50 0.00 35.64 3.16
4849 11417 3.583806 GATGTCCACTGAGTCTCTGTTG 58.416 50.000 9.50 7.07 0.00 3.33
4850 11418 1.688735 TGTCCACTGAGTCTCTGTTGG 59.311 52.381 9.50 13.39 0.00 3.77
4851 11419 0.681733 TCCACTGAGTCTCTGTTGGC 59.318 55.000 9.50 0.00 0.00 4.52
4852 11420 0.683973 CCACTGAGTCTCTGTTGGCT 59.316 55.000 9.50 0.00 0.00 4.75
4853 11421 1.607509 CCACTGAGTCTCTGTTGGCTG 60.608 57.143 9.50 0.00 0.00 4.85
4854 11422 1.069823 CACTGAGTCTCTGTTGGCTGT 59.930 52.381 9.50 0.00 0.00 4.40
4855 11423 1.069823 ACTGAGTCTCTGTTGGCTGTG 59.930 52.381 6.56 0.00 0.00 3.66
4856 11424 1.069823 CTGAGTCTCTGTTGGCTGTGT 59.930 52.381 0.65 0.00 0.00 3.72
4857 11425 2.297315 CTGAGTCTCTGTTGGCTGTGTA 59.703 50.000 0.65 0.00 0.00 2.90
4858 11426 2.698274 TGAGTCTCTGTTGGCTGTGTAA 59.302 45.455 0.65 0.00 0.00 2.41
4859 11427 3.133901 TGAGTCTCTGTTGGCTGTGTAAA 59.866 43.478 0.65 0.00 0.00 2.01
4860 11428 4.127171 GAGTCTCTGTTGGCTGTGTAAAA 58.873 43.478 0.00 0.00 0.00 1.52
4861 11429 3.877508 AGTCTCTGTTGGCTGTGTAAAAC 59.122 43.478 0.00 0.00 0.00 2.43
4862 11430 3.877508 GTCTCTGTTGGCTGTGTAAAACT 59.122 43.478 0.00 0.00 0.00 2.66
4863 11431 3.876914 TCTCTGTTGGCTGTGTAAAACTG 59.123 43.478 0.00 0.00 0.00 3.16
4869 11437 1.897560 GCTGTGTAAAACTGCCTCCT 58.102 50.000 0.00 0.00 45.36 3.69
4870 11438 3.053831 GCTGTGTAAAACTGCCTCCTA 57.946 47.619 0.00 0.00 45.36 2.94
4871 11439 3.003480 GCTGTGTAAAACTGCCTCCTAG 58.997 50.000 0.00 0.00 45.36 3.02
4872 11440 3.600388 CTGTGTAAAACTGCCTCCTAGG 58.400 50.000 0.82 0.82 38.80 3.02
4873 11441 3.244582 TGTGTAAAACTGCCTCCTAGGA 58.755 45.455 11.98 11.98 37.67 2.94
4874 11442 3.260884 TGTGTAAAACTGCCTCCTAGGAG 59.739 47.826 29.27 29.27 37.67 3.69
4887 11455 5.491323 CTCCTAGGAGGATGTAAATTCCC 57.509 47.826 28.68 0.00 44.81 3.97
4888 11456 5.158889 CTCCTAGGAGGATGTAAATTCCCT 58.841 45.833 28.68 0.00 44.81 4.20
4889 11457 5.548573 TCCTAGGAGGATGTAAATTCCCTT 58.451 41.667 7.62 0.00 40.06 3.95
4890 11458 5.976870 TCCTAGGAGGATGTAAATTCCCTTT 59.023 40.000 7.62 0.00 40.06 3.11
4891 11459 6.101296 TCCTAGGAGGATGTAAATTCCCTTTC 59.899 42.308 7.62 0.00 40.06 2.62
4892 11460 6.101881 CCTAGGAGGATGTAAATTCCCTTTCT 59.898 42.308 1.05 0.00 37.67 2.52
4893 11461 6.408770 AGGAGGATGTAAATTCCCTTTCTT 57.591 37.500 0.00 0.00 33.45 2.52
4894 11462 6.805150 AGGAGGATGTAAATTCCCTTTCTTT 58.195 36.000 0.00 0.00 33.45 2.52
4895 11463 6.892456 AGGAGGATGTAAATTCCCTTTCTTTC 59.108 38.462 0.00 0.00 33.45 2.62
4896 11464 6.096987 GGAGGATGTAAATTCCCTTTCTTTCC 59.903 42.308 0.00 0.00 33.45 3.13
4897 11465 6.561294 AGGATGTAAATTCCCTTTCTTTCCA 58.439 36.000 0.00 0.00 33.45 3.53
4898 11466 7.016296 AGGATGTAAATTCCCTTTCTTTCCAA 58.984 34.615 0.00 0.00 33.45 3.53
4899 11467 7.679881 AGGATGTAAATTCCCTTTCTTTCCAAT 59.320 33.333 0.00 0.00 33.45 3.16
4900 11468 7.765819 GGATGTAAATTCCCTTTCTTTCCAATG 59.234 37.037 0.00 0.00 0.00 2.82
4901 11469 6.463360 TGTAAATTCCCTTTCTTTCCAATGC 58.537 36.000 0.00 0.00 0.00 3.56
4902 11470 5.565455 AAATTCCCTTTCTTTCCAATGCA 57.435 34.783 0.00 0.00 0.00 3.96
4903 11471 5.565455 AATTCCCTTTCTTTCCAATGCAA 57.435 34.783 0.00 0.00 0.00 4.08
4904 11472 5.767277 ATTCCCTTTCTTTCCAATGCAAT 57.233 34.783 0.00 0.00 0.00 3.56
4905 11473 4.540359 TCCCTTTCTTTCCAATGCAATG 57.460 40.909 0.00 0.00 0.00 2.82
4906 11474 4.158786 TCCCTTTCTTTCCAATGCAATGA 58.841 39.130 2.50 0.00 0.00 2.57
4907 11475 4.592351 TCCCTTTCTTTCCAATGCAATGAA 59.408 37.500 2.50 0.00 0.00 2.57
4908 11476 5.071519 TCCCTTTCTTTCCAATGCAATGAAA 59.928 36.000 2.50 5.96 0.00 2.69
4909 11477 5.179929 CCCTTTCTTTCCAATGCAATGAAAC 59.820 40.000 2.50 0.00 0.00 2.78
4910 11478 5.107375 CCTTTCTTTCCAATGCAATGAAACG 60.107 40.000 2.50 0.00 0.00 3.60
4911 11479 3.316283 TCTTTCCAATGCAATGAAACGC 58.684 40.909 2.50 0.00 0.00 4.84
4912 11480 2.808523 TTCCAATGCAATGAAACGCA 57.191 40.000 2.50 0.00 43.45 5.24
4913 11481 2.808523 TCCAATGCAATGAAACGCAA 57.191 40.000 2.50 0.00 42.37 4.85
4914 11482 3.103447 TCCAATGCAATGAAACGCAAA 57.897 38.095 2.50 0.00 42.37 3.68
4915 11483 3.461061 TCCAATGCAATGAAACGCAAAA 58.539 36.364 2.50 0.00 42.37 2.44
4916 11484 3.493877 TCCAATGCAATGAAACGCAAAAG 59.506 39.130 2.50 0.00 42.37 2.27
4917 11485 3.219981 CAATGCAATGAAACGCAAAAGC 58.780 40.909 0.00 0.00 42.37 3.51
4918 11486 1.216122 TGCAATGAAACGCAAAAGCC 58.784 45.000 0.00 0.00 34.59 4.35
4919 11487 1.216122 GCAATGAAACGCAAAAGCCA 58.784 45.000 0.00 0.00 0.00 4.75
4920 11488 1.799994 GCAATGAAACGCAAAAGCCAT 59.200 42.857 0.00 0.00 0.00 4.40
4921 11489 2.223845 GCAATGAAACGCAAAAGCCATT 59.776 40.909 0.00 0.00 0.00 3.16
4922 11490 3.303924 GCAATGAAACGCAAAAGCCATTT 60.304 39.130 0.00 0.00 0.00 2.32
4934 11502 3.765349 GCCATTTGCGTTTTCTCGA 57.235 47.368 0.00 0.00 0.00 4.04
4935 11503 2.044888 GCCATTTGCGTTTTCTCGAA 57.955 45.000 0.00 0.00 0.00 3.71
4936 11504 2.389998 GCCATTTGCGTTTTCTCGAAA 58.610 42.857 0.00 0.00 0.00 3.46
4937 11505 2.792116 GCCATTTGCGTTTTCTCGAAAA 59.208 40.909 0.93 0.93 41.60 2.29
4938 11506 3.244111 GCCATTTGCGTTTTCTCGAAAAA 59.756 39.130 6.41 0.00 40.89 1.94
5026 11594 8.983307 AGACCGAAGTTAGTATAAGAACTTTG 57.017 34.615 15.31 15.31 44.04 2.77
5813 12389 0.461693 GCTCTCTTCAGCGATTGCCT 60.462 55.000 0.00 0.00 44.31 4.75
5844 12420 1.484240 GCCTCTATGACAGACCTGCTT 59.516 52.381 0.00 0.00 0.00 3.91
6140 12716 3.805971 GTCAGCAAAGCAAAAGCAAATCT 59.194 39.130 0.00 0.00 0.00 2.40
6490 13066 4.819769 TCATTGCTTTAAATTCAGCCCAC 58.180 39.130 0.00 0.00 34.91 4.61
6494 13070 2.732282 GCTTTAAATTCAGCCCACGCTC 60.732 50.000 0.00 0.00 43.95 5.03
6497 13073 0.326264 AAATTCAGCCCACGCTCTCT 59.674 50.000 0.00 0.00 43.95 3.10
6714 13290 7.972527 CATCTTATGCTCATGGCTTATTCTAC 58.027 38.462 7.54 0.00 42.39 2.59
6755 13332 7.925483 CCCAAGATTACAAATGTCAACTGAAAA 59.075 33.333 0.00 0.00 0.00 2.29
6756 13333 9.480053 CCAAGATTACAAATGTCAACTGAAAAT 57.520 29.630 0.00 0.00 0.00 1.82
6761 13338 8.815141 TTACAAATGTCAACTGAAAATGATGG 57.185 30.769 0.00 0.00 0.00 3.51
6762 13339 6.819284 ACAAATGTCAACTGAAAATGATGGT 58.181 32.000 0.00 0.00 0.00 3.55
6763 13340 7.950512 ACAAATGTCAACTGAAAATGATGGTA 58.049 30.769 0.00 0.00 0.00 3.25
6764 13341 8.587608 ACAAATGTCAACTGAAAATGATGGTAT 58.412 29.630 0.00 0.00 0.00 2.73
6765 13342 8.865978 CAAATGTCAACTGAAAATGATGGTATG 58.134 33.333 0.00 0.00 0.00 2.39
6820 13398 1.132262 CTCAGCTCGAGGAGTGTCTTC 59.868 57.143 15.58 0.00 38.18 2.87
6876 13454 4.988598 CAACTCCACCGCGCCACT 62.989 66.667 0.00 0.00 0.00 4.00
6911 13491 5.585047 GTCCGTTTTGCCTAGATTATGTCTT 59.415 40.000 0.00 0.00 38.42 3.01
6993 13573 2.880879 CGTGGACGCATCCTGTCG 60.881 66.667 0.00 0.00 46.43 4.35
7128 13711 9.827411 GAACCACAAGAATACATTTTAGAAGAC 57.173 33.333 0.00 0.00 0.00 3.01
7160 13743 4.286032 TCCATAACTGCTCCTGTAAGTTGT 59.714 41.667 0.00 0.00 35.77 3.32
7190 13773 4.676196 GCCTTCTCGATGCATTCATTGTTT 60.676 41.667 0.00 0.00 35.89 2.83
7193 13776 7.198390 CCTTCTCGATGCATTCATTGTTTATT 58.802 34.615 0.00 0.00 35.89 1.40
7197 13780 5.229678 TCGATGCATTCATTGTTTATTTGCG 59.770 36.000 0.00 0.00 35.89 4.85
7198 13781 5.554883 CGATGCATTCATTGTTTATTTGCGG 60.555 40.000 0.00 0.00 31.96 5.69
7199 13782 4.814147 TGCATTCATTGTTTATTTGCGGA 58.186 34.783 0.00 0.00 0.00 5.54
7338 13927 7.040473 TCTACAGCCTCTATGCTAACTAAAC 57.960 40.000 0.00 0.00 40.32 2.01
7345 13934 4.811908 TCTATGCTAACTAAACGTGCACA 58.188 39.130 18.64 0.00 36.44 4.57
7387 13976 7.858382 GCGCTCTATCAATATATCGATGTACTT 59.142 37.037 8.54 0.17 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.008696 TCCACTCTAGAAAACCCAAAAGAA 57.991 37.500 0.00 0.00 0.00 2.52
41 42 7.116662 CACTAGCTGAGAATCTGATTATGCTTC 59.883 40.741 12.97 0.00 35.94 3.86
62 63 4.021981 TCCCATGCAGTAATCGATCACTAG 60.022 45.833 0.00 0.00 0.00 2.57
76 77 2.361119 CCATCTCATTTGTCCCATGCAG 59.639 50.000 0.00 0.00 0.00 4.41
124 125 1.205893 GAAGCCACATCCTCGTTCTCT 59.794 52.381 0.00 0.00 0.00 3.10
125 126 1.066858 TGAAGCCACATCCTCGTTCTC 60.067 52.381 0.00 0.00 0.00 2.87
128 129 0.687354 AGTGAAGCCACATCCTCGTT 59.313 50.000 0.00 0.00 45.54 3.85
132 133 3.392616 CCCTATAAGTGAAGCCACATCCT 59.607 47.826 0.00 0.00 45.54 3.24
174 175 7.707893 GCATGGCTTTATTACAAGATCAAACAT 59.292 33.333 0.00 0.00 0.00 2.71
190 191 1.677576 GCTAGCACATGCATGGCTTTA 59.322 47.619 33.13 21.76 45.16 1.85
192 193 1.721664 CGCTAGCACATGCATGGCTT 61.722 55.000 33.13 22.32 45.16 4.35
193 194 2.184830 CGCTAGCACATGCATGGCT 61.185 57.895 31.66 31.66 45.16 4.75
194 195 2.114331 CTCGCTAGCACATGCATGGC 62.114 60.000 29.41 26.51 45.16 4.40
195 196 0.812811 ACTCGCTAGCACATGCATGG 60.813 55.000 29.41 19.00 45.16 3.66
197 198 2.602257 TAACTCGCTAGCACATGCAT 57.398 45.000 16.45 0.00 45.16 3.96
198 199 2.602257 ATAACTCGCTAGCACATGCA 57.398 45.000 16.45 0.00 45.16 3.96
199 200 3.643763 ACTATAACTCGCTAGCACATGC 58.356 45.455 16.45 0.00 42.49 4.06
236 2689 7.375017 CACTAGTGTTGAAAAACGTTATGGAAC 59.625 37.037 15.06 3.84 0.00 3.62
238 2691 6.539464 ACACTAGTGTTGAAAAACGTTATGGA 59.461 34.615 22.95 0.00 41.83 3.41
239 2692 6.721321 ACACTAGTGTTGAAAAACGTTATGG 58.279 36.000 22.95 0.00 41.83 2.74
289 2795 9.436957 TTCACTCAAACTAAATAGGAATGACTC 57.563 33.333 0.00 0.00 0.00 3.36
290 2796 9.793259 TTTCACTCAAACTAAATAGGAATGACT 57.207 29.630 0.00 0.00 0.00 3.41
309 2815 4.764172 AGGCATCATGAGTAGTTTCACTC 58.236 43.478 0.09 0.00 44.37 3.51
311 2817 5.163713 GGAAAGGCATCATGAGTAGTTTCAC 60.164 44.000 18.01 9.14 0.00 3.18
313 2819 5.189180 AGGAAAGGCATCATGAGTAGTTTC 58.811 41.667 0.09 7.98 0.00 2.78
316 2824 4.851639 AAGGAAAGGCATCATGAGTAGT 57.148 40.909 0.09 0.00 0.00 2.73
1020 3538 0.904865 AATCACCTGAGTCCTCGCCA 60.905 55.000 0.00 0.00 0.00 5.69
1193 3711 7.119992 TGCAAATGTATTGTGTTATCCGTAAGT 59.880 33.333 0.00 0.00 0.00 2.24
1428 3955 7.462571 AATTGGAAAAGTACCAGTAATGACC 57.537 36.000 0.00 0.00 38.70 4.02
1523 4050 3.756434 GGATTACTGTTGTTGCCTAGCAA 59.244 43.478 0.00 0.00 46.80 3.91
1524 4051 3.009033 AGGATTACTGTTGTTGCCTAGCA 59.991 43.478 0.00 0.00 36.47 3.49
1532 4059 3.611766 AGCGCTAGGATTACTGTTGTT 57.388 42.857 8.99 0.00 0.00 2.83
1542 4069 3.692257 AGCATGATTAAGCGCTAGGAT 57.308 42.857 12.05 4.87 35.48 3.24
2042 4603 0.039256 GCTTTTGGCAATGTCGAGCA 60.039 50.000 0.00 0.00 41.35 4.26
2119 4680 1.246649 TGGTTGATGGTGATGTGTGC 58.753 50.000 0.00 0.00 0.00 4.57
2230 4791 3.214328 ACAAGACACGAAGAAAGGCAAT 58.786 40.909 0.00 0.00 0.00 3.56
2281 4872 2.923121 TGCAGATAAGGCTGATTCACC 58.077 47.619 0.00 0.00 38.14 4.02
2575 5176 4.936411 TCGGCCGATAAATCAGTTAAACAA 59.064 37.500 27.28 0.00 0.00 2.83
2671 5272 1.505353 GAGCTCCTGTGTGCAATGC 59.495 57.895 0.87 0.00 33.44 3.56
2762 5363 3.840437 TGAACAAGTGGTGCAGGC 58.160 55.556 0.00 0.00 29.22 4.85
2911 5512 3.914426 TGGGAAGAGGAGAAGCATTAC 57.086 47.619 0.00 0.00 0.00 1.89
3103 5714 2.524569 TGCAACTGACAATGACGAGA 57.475 45.000 0.00 0.00 0.00 4.04
3165 5781 4.648651 TGGAGTTTTTACTGCCCTCTTAC 58.351 43.478 0.00 0.00 0.00 2.34
3252 5871 1.392853 GAGCACTTCGAGCACATCAAG 59.607 52.381 0.00 0.00 0.00 3.02
3321 5940 0.968901 TCGCCGTGTCCTTCCATACT 60.969 55.000 0.00 0.00 0.00 2.12
3336 5955 2.665185 GTGTCCGGCCATATCGCC 60.665 66.667 2.24 0.44 46.13 5.54
3363 5982 0.388649 GGGATACTGCAGGATACGCG 60.389 60.000 19.93 3.53 46.39 6.01
3366 5985 2.609747 TGAGGGGATACTGCAGGATAC 58.390 52.381 19.93 16.72 0.00 2.24
3435 6054 2.714250 AGTCCCCAACATGTTCCTTACA 59.286 45.455 8.48 0.00 41.97 2.41
3437 6056 2.027561 CGAGTCCCCAACATGTTCCTTA 60.028 50.000 8.48 0.00 0.00 2.69
3448 6067 4.649705 TGCCTCCCGAGTCCCCAA 62.650 66.667 0.00 0.00 0.00 4.12
3462 6081 2.202756 CGAGCCCGTTACTCTGCC 60.203 66.667 0.00 0.00 31.71 4.85
3704 6329 3.376546 GCAGCAATCAAAAACCCAAACAA 59.623 39.130 0.00 0.00 0.00 2.83
3764 6389 2.185004 TGCTCCCTAACAGAAAGCAC 57.815 50.000 0.00 0.00 38.01 4.40
3770 6395 1.141657 GATGCCATGCTCCCTAACAGA 59.858 52.381 0.00 0.00 0.00 3.41
3831 6456 4.394920 AGACCCATGTTATTACAACTTGCG 59.605 41.667 0.00 0.00 37.91 4.85
3973 8197 8.173130 ACGGCGAGTATAGAACAAAATTTTAAG 58.827 33.333 16.62 0.00 0.00 1.85
4074 10586 3.451178 AGAGAGCTAAAAGGCACGGATAA 59.549 43.478 0.00 0.00 34.17 1.75
4273 10837 2.778850 ACCACCACCTAACCACAAGTAA 59.221 45.455 0.00 0.00 0.00 2.24
4388 10956 4.900684 TGGTGATTCGACAATTCTTGGTA 58.099 39.130 0.00 0.00 34.12 3.25
4523 11091 0.184692 TGTGCCCAACAGAACATGGA 59.815 50.000 0.00 0.00 39.12 3.41
4549 11117 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
4550 11118 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
4551 11119 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
4552 11120 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
4553 11121 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
4554 11122 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
4555 11123 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
4556 11124 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
4601 11169 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
4602 11170 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
4603 11171 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
4604 11172 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
4605 11173 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
4607 11175 3.378339 CGTCCGTCCCATAATGTAAGAC 58.622 50.000 0.00 0.00 0.00 3.01
4608 11176 2.363038 CCGTCCGTCCCATAATGTAAGA 59.637 50.000 0.00 0.00 0.00 2.10
4609 11177 2.363038 TCCGTCCGTCCCATAATGTAAG 59.637 50.000 0.00 0.00 0.00 2.34
4610 11178 2.363038 CTCCGTCCGTCCCATAATGTAA 59.637 50.000 0.00 0.00 0.00 2.41
4611 11179 1.958579 CTCCGTCCGTCCCATAATGTA 59.041 52.381 0.00 0.00 0.00 2.29
4612 11180 0.750850 CTCCGTCCGTCCCATAATGT 59.249 55.000 0.00 0.00 0.00 2.71
4613 11181 0.750850 ACTCCGTCCGTCCCATAATG 59.249 55.000 0.00 0.00 0.00 1.90
4614 11182 2.363359 GTTACTCCGTCCGTCCCATAAT 59.637 50.000 0.00 0.00 0.00 1.28
4615 11183 1.750778 GTTACTCCGTCCGTCCCATAA 59.249 52.381 0.00 0.00 0.00 1.90
4616 11184 1.064463 AGTTACTCCGTCCGTCCCATA 60.064 52.381 0.00 0.00 0.00 2.74
4617 11185 0.324091 AGTTACTCCGTCCGTCCCAT 60.324 55.000 0.00 0.00 0.00 4.00
4618 11186 1.075482 AGTTACTCCGTCCGTCCCA 59.925 57.895 0.00 0.00 0.00 4.37
4619 11187 1.246737 ACAGTTACTCCGTCCGTCCC 61.247 60.000 0.00 0.00 0.00 4.46
4620 11188 0.600057 AACAGTTACTCCGTCCGTCC 59.400 55.000 0.00 0.00 0.00 4.79
4621 11189 3.057946 ACTTAACAGTTACTCCGTCCGTC 60.058 47.826 0.00 0.00 0.00 4.79
4622 11190 2.887152 ACTTAACAGTTACTCCGTCCGT 59.113 45.455 0.00 0.00 0.00 4.69
4623 11191 3.565905 ACTTAACAGTTACTCCGTCCG 57.434 47.619 0.00 0.00 0.00 4.79
4624 11192 7.066284 TGTCTATACTTAACAGTTACTCCGTCC 59.934 40.741 0.00 0.00 34.06 4.79
4625 11193 7.978982 TGTCTATACTTAACAGTTACTCCGTC 58.021 38.462 0.00 0.00 34.06 4.79
4626 11194 7.928307 TGTCTATACTTAACAGTTACTCCGT 57.072 36.000 0.00 0.00 34.06 4.69
4627 11195 8.618677 TGATGTCTATACTTAACAGTTACTCCG 58.381 37.037 0.00 0.00 34.06 4.63
4631 11199 9.694137 GGGATGATGTCTATACTTAACAGTTAC 57.306 37.037 0.00 0.00 34.06 2.50
4656 11224 8.930846 ATTTAGAATCTTTGGTCATCATAGGG 57.069 34.615 0.00 0.00 0.00 3.53
4711 11279 1.610624 GGCCTCACATGGTCGAAAAGA 60.611 52.381 0.00 0.00 0.00 2.52
4712 11280 0.804989 GGCCTCACATGGTCGAAAAG 59.195 55.000 0.00 0.00 0.00 2.27
4713 11281 0.109532 TGGCCTCACATGGTCGAAAA 59.890 50.000 3.32 0.00 33.69 2.29
4714 11282 0.327924 ATGGCCTCACATGGTCGAAA 59.672 50.000 3.32 0.00 33.69 3.46
4715 11283 0.107703 GATGGCCTCACATGGTCGAA 60.108 55.000 3.32 0.00 33.69 3.71
4716 11284 1.522092 GATGGCCTCACATGGTCGA 59.478 57.895 3.32 0.00 33.69 4.20
4717 11285 1.884464 CGATGGCCTCACATGGTCG 60.884 63.158 3.32 0.00 33.69 4.79
4718 11286 2.182842 GCGATGGCCTCACATGGTC 61.183 63.158 3.32 0.00 0.00 4.02
4719 11287 2.124570 GCGATGGCCTCACATGGT 60.125 61.111 3.32 0.00 0.00 3.55
4720 11288 2.184830 CAGCGATGGCCTCACATGG 61.185 63.158 3.32 0.00 41.24 3.66
4721 11289 0.745486 TTCAGCGATGGCCTCACATG 60.745 55.000 3.32 0.00 41.24 3.21
4722 11290 0.182061 ATTCAGCGATGGCCTCACAT 59.818 50.000 3.32 0.00 41.24 3.21
4723 11291 0.745486 CATTCAGCGATGGCCTCACA 60.745 55.000 3.32 0.00 41.24 3.58
4724 11292 0.462581 TCATTCAGCGATGGCCTCAC 60.463 55.000 3.32 0.00 41.24 3.51
4725 11293 0.179065 CTCATTCAGCGATGGCCTCA 60.179 55.000 3.32 0.00 41.24 3.86
4726 11294 1.505477 GCTCATTCAGCGATGGCCTC 61.505 60.000 3.32 0.00 38.76 4.70
4727 11295 1.525535 GCTCATTCAGCGATGGCCT 60.526 57.895 3.32 0.00 38.76 5.19
4728 11296 3.028969 GCTCATTCAGCGATGGCC 58.971 61.111 0.00 0.00 38.76 5.36
4736 11304 4.462508 TCCTGTCTACAAGCTCATTCAG 57.537 45.455 0.00 0.00 0.00 3.02
4737 11305 5.426689 AATCCTGTCTACAAGCTCATTCA 57.573 39.130 0.00 0.00 0.00 2.57
4738 11306 7.766278 TCTTTAATCCTGTCTACAAGCTCATTC 59.234 37.037 0.00 0.00 0.00 2.67
4739 11307 7.550906 GTCTTTAATCCTGTCTACAAGCTCATT 59.449 37.037 0.00 0.00 0.00 2.57
4740 11308 7.044798 GTCTTTAATCCTGTCTACAAGCTCAT 58.955 38.462 0.00 0.00 0.00 2.90
4741 11309 6.398918 GTCTTTAATCCTGTCTACAAGCTCA 58.601 40.000 0.00 0.00 0.00 4.26
4742 11310 5.517054 CGTCTTTAATCCTGTCTACAAGCTC 59.483 44.000 0.00 0.00 0.00 4.09
4743 11311 5.185249 TCGTCTTTAATCCTGTCTACAAGCT 59.815 40.000 0.00 0.00 0.00 3.74
4744 11312 5.408356 TCGTCTTTAATCCTGTCTACAAGC 58.592 41.667 0.00 0.00 0.00 4.01
4745 11313 6.748198 GTCTCGTCTTTAATCCTGTCTACAAG 59.252 42.308 0.00 0.00 0.00 3.16
4746 11314 6.433404 AGTCTCGTCTTTAATCCTGTCTACAA 59.567 38.462 0.00 0.00 0.00 2.41
4747 11315 5.944599 AGTCTCGTCTTTAATCCTGTCTACA 59.055 40.000 0.00 0.00 0.00 2.74
4748 11316 6.439675 AGTCTCGTCTTTAATCCTGTCTAC 57.560 41.667 0.00 0.00 0.00 2.59
4749 11317 5.293814 CGAGTCTCGTCTTTAATCCTGTCTA 59.706 44.000 14.27 0.00 34.72 2.59
4750 11318 4.095185 CGAGTCTCGTCTTTAATCCTGTCT 59.905 45.833 14.27 0.00 34.72 3.41
4751 11319 4.094590 TCGAGTCTCGTCTTTAATCCTGTC 59.905 45.833 21.15 0.00 41.35 3.51
4752 11320 4.008330 TCGAGTCTCGTCTTTAATCCTGT 58.992 43.478 21.15 0.00 41.35 4.00
4753 11321 4.617808 TCGAGTCTCGTCTTTAATCCTG 57.382 45.455 21.15 0.00 41.35 3.86
4754 11322 4.641094 ACATCGAGTCTCGTCTTTAATCCT 59.359 41.667 21.15 0.00 41.35 3.24
4755 11323 4.922719 ACATCGAGTCTCGTCTTTAATCC 58.077 43.478 21.15 0.00 41.35 3.01
4756 11324 5.230306 CCAACATCGAGTCTCGTCTTTAATC 59.770 44.000 21.15 0.00 41.35 1.75
4757 11325 5.103000 CCAACATCGAGTCTCGTCTTTAAT 58.897 41.667 21.15 4.21 41.35 1.40
4758 11326 4.482386 CCAACATCGAGTCTCGTCTTTAA 58.518 43.478 21.15 1.79 41.35 1.52
4759 11327 3.119602 CCCAACATCGAGTCTCGTCTTTA 60.120 47.826 21.15 2.55 41.35 1.85
4760 11328 2.352814 CCCAACATCGAGTCTCGTCTTT 60.353 50.000 21.15 10.00 41.35 2.52
4761 11329 1.202582 CCCAACATCGAGTCTCGTCTT 59.797 52.381 21.15 8.68 41.35 3.01
4762 11330 0.811915 CCCAACATCGAGTCTCGTCT 59.188 55.000 21.15 8.05 41.35 4.18
4763 11331 0.802607 GCCCAACATCGAGTCTCGTC 60.803 60.000 21.15 0.00 41.35 4.20
4764 11332 1.215647 GCCCAACATCGAGTCTCGT 59.784 57.895 21.15 6.81 41.35 4.18
4765 11333 0.389817 TTGCCCAACATCGAGTCTCG 60.390 55.000 16.33 16.33 42.10 4.04
4766 11334 1.734465 CTTTGCCCAACATCGAGTCTC 59.266 52.381 0.00 0.00 0.00 3.36
4767 11335 1.611673 CCTTTGCCCAACATCGAGTCT 60.612 52.381 0.00 0.00 0.00 3.24
4768 11336 0.804989 CCTTTGCCCAACATCGAGTC 59.195 55.000 0.00 0.00 0.00 3.36
4769 11337 1.244019 GCCTTTGCCCAACATCGAGT 61.244 55.000 0.00 0.00 0.00 4.18
4770 11338 1.508088 GCCTTTGCCCAACATCGAG 59.492 57.895 0.00 0.00 0.00 4.04
4771 11339 3.680156 GCCTTTGCCCAACATCGA 58.320 55.556 0.00 0.00 0.00 3.59
4782 11350 3.064324 CTTGAGCCCCGGCCTTTG 61.064 66.667 0.00 0.00 43.17 2.77
4783 11351 4.366684 CCTTGAGCCCCGGCCTTT 62.367 66.667 0.00 0.00 43.17 3.11
4789 11357 4.479993 CTGAGCCCTTGAGCCCCG 62.480 72.222 0.00 0.00 0.00 5.73
4790 11358 4.120755 CCTGAGCCCTTGAGCCCC 62.121 72.222 0.00 0.00 0.00 5.80
4791 11359 4.120755 CCCTGAGCCCTTGAGCCC 62.121 72.222 0.00 0.00 0.00 5.19
4792 11360 3.334054 ACCCTGAGCCCTTGAGCC 61.334 66.667 0.00 0.00 0.00 4.70
4793 11361 2.045536 CACCCTGAGCCCTTGAGC 60.046 66.667 0.00 0.00 0.00 4.26
4794 11362 0.111253 AAACACCCTGAGCCCTTGAG 59.889 55.000 0.00 0.00 0.00 3.02
4795 11363 0.555769 AAAACACCCTGAGCCCTTGA 59.444 50.000 0.00 0.00 0.00 3.02
4796 11364 0.675633 CAAAACACCCTGAGCCCTTG 59.324 55.000 0.00 0.00 0.00 3.61
4797 11365 1.115326 GCAAAACACCCTGAGCCCTT 61.115 55.000 0.00 0.00 0.00 3.95
4798 11366 1.531602 GCAAAACACCCTGAGCCCT 60.532 57.895 0.00 0.00 0.00 5.19
4799 11367 2.574018 GGCAAAACACCCTGAGCCC 61.574 63.158 0.00 0.00 36.17 5.19
4800 11368 1.187567 ATGGCAAAACACCCTGAGCC 61.188 55.000 0.00 0.00 42.32 4.70
4801 11369 0.244721 GATGGCAAAACACCCTGAGC 59.755 55.000 0.00 0.00 0.00 4.26
4802 11370 1.619654 TGATGGCAAAACACCCTGAG 58.380 50.000 0.00 0.00 0.00 3.35
4803 11371 2.170166 GATGATGGCAAAACACCCTGA 58.830 47.619 0.00 0.00 0.00 3.86
4804 11372 1.205417 GGATGATGGCAAAACACCCTG 59.795 52.381 0.00 0.00 0.00 4.45
4805 11373 1.077663 AGGATGATGGCAAAACACCCT 59.922 47.619 0.00 0.00 0.00 4.34
4806 11374 1.205417 CAGGATGATGGCAAAACACCC 59.795 52.381 0.00 0.00 39.69 4.61
4807 11375 1.205417 CCAGGATGATGGCAAAACACC 59.795 52.381 0.00 0.00 39.69 4.16
4808 11376 1.205417 CCCAGGATGATGGCAAAACAC 59.795 52.381 0.00 0.00 39.69 3.32
4809 11377 1.076841 TCCCAGGATGATGGCAAAACA 59.923 47.619 0.00 0.00 39.69 2.83
4810 11378 1.851304 TCCCAGGATGATGGCAAAAC 58.149 50.000 0.00 0.00 39.69 2.43
4811 11379 2.852714 ATCCCAGGATGATGGCAAAA 57.147 45.000 0.00 0.00 39.69 2.44
4825 11393 1.077828 AGAGACTCAGTGGACATCCCA 59.922 52.381 5.02 0.00 44.25 4.37
4826 11394 1.480137 CAGAGACTCAGTGGACATCCC 59.520 57.143 5.02 0.00 34.29 3.85
4827 11395 2.175202 ACAGAGACTCAGTGGACATCC 58.825 52.381 5.02 0.00 0.00 3.51
4828 11396 3.583806 CAACAGAGACTCAGTGGACATC 58.416 50.000 5.02 0.00 0.00 3.06
4829 11397 2.301296 CCAACAGAGACTCAGTGGACAT 59.699 50.000 11.73 0.00 0.00 3.06
4830 11398 1.688735 CCAACAGAGACTCAGTGGACA 59.311 52.381 11.73 0.00 0.00 4.02
4831 11399 1.606737 GCCAACAGAGACTCAGTGGAC 60.607 57.143 18.38 9.21 0.00 4.02
4832 11400 0.681733 GCCAACAGAGACTCAGTGGA 59.318 55.000 18.38 0.00 0.00 4.02
4833 11401 0.683973 AGCCAACAGAGACTCAGTGG 59.316 55.000 5.02 9.61 0.00 4.00
4834 11402 1.069823 ACAGCCAACAGAGACTCAGTG 59.930 52.381 5.02 0.00 0.00 3.66
4835 11403 1.069823 CACAGCCAACAGAGACTCAGT 59.930 52.381 5.02 0.00 0.00 3.41
4836 11404 1.069823 ACACAGCCAACAGAGACTCAG 59.930 52.381 5.02 0.00 0.00 3.35
4837 11405 1.123077 ACACAGCCAACAGAGACTCA 58.877 50.000 5.02 0.00 0.00 3.41
4838 11406 3.386768 TTACACAGCCAACAGAGACTC 57.613 47.619 0.00 0.00 0.00 3.36
4839 11407 3.838244 TTTACACAGCCAACAGAGACT 57.162 42.857 0.00 0.00 0.00 3.24
4840 11408 3.877508 AGTTTTACACAGCCAACAGAGAC 59.122 43.478 0.00 0.00 0.00 3.36
4841 11409 3.876914 CAGTTTTACACAGCCAACAGAGA 59.123 43.478 0.00 0.00 0.00 3.10
4842 11410 3.548818 GCAGTTTTACACAGCCAACAGAG 60.549 47.826 0.00 0.00 31.68 3.35
4843 11411 2.357637 GCAGTTTTACACAGCCAACAGA 59.642 45.455 0.00 0.00 31.68 3.41
4844 11412 2.731217 GCAGTTTTACACAGCCAACAG 58.269 47.619 0.00 0.00 31.68 3.16
4845 11413 2.861462 GCAGTTTTACACAGCCAACA 57.139 45.000 0.00 0.00 31.68 3.33
4850 11418 1.897560 AGGAGGCAGTTTTACACAGC 58.102 50.000 0.00 0.00 37.18 4.40
4851 11419 3.260884 TCCTAGGAGGCAGTTTTACACAG 59.739 47.826 7.62 0.00 34.61 3.66
4852 11420 3.244582 TCCTAGGAGGCAGTTTTACACA 58.755 45.455 7.62 0.00 34.61 3.72
4853 11421 3.863041 CTCCTAGGAGGCAGTTTTACAC 58.137 50.000 28.68 0.00 38.51 2.90
4867 11435 5.913946 AAGGGAATTTACATCCTCCTAGG 57.086 43.478 0.82 0.82 37.14 3.02
4868 11436 7.142995 AGAAAGGGAATTTACATCCTCCTAG 57.857 40.000 0.00 0.00 37.14 3.02
4869 11437 7.525158 AAGAAAGGGAATTTACATCCTCCTA 57.475 36.000 0.00 0.00 37.14 2.94
4870 11438 6.408770 AAGAAAGGGAATTTACATCCTCCT 57.591 37.500 0.00 0.00 37.14 3.69
4871 11439 6.096987 GGAAAGAAAGGGAATTTACATCCTCC 59.903 42.308 0.00 0.00 37.14 4.30
4872 11440 6.663523 TGGAAAGAAAGGGAATTTACATCCTC 59.336 38.462 0.00 0.00 37.14 3.71
4873 11441 6.561294 TGGAAAGAAAGGGAATTTACATCCT 58.439 36.000 0.00 0.00 37.14 3.24
4874 11442 6.850752 TGGAAAGAAAGGGAATTTACATCC 57.149 37.500 0.00 0.00 36.16 3.51
4875 11443 7.278646 GCATTGGAAAGAAAGGGAATTTACATC 59.721 37.037 0.00 0.00 0.00 3.06
4876 11444 7.105588 GCATTGGAAAGAAAGGGAATTTACAT 58.894 34.615 0.00 0.00 0.00 2.29
4877 11445 6.042552 TGCATTGGAAAGAAAGGGAATTTACA 59.957 34.615 0.00 0.00 0.00 2.41
4878 11446 6.463360 TGCATTGGAAAGAAAGGGAATTTAC 58.537 36.000 0.00 0.00 0.00 2.01
4879 11447 6.678568 TGCATTGGAAAGAAAGGGAATTTA 57.321 33.333 0.00 0.00 0.00 1.40
4880 11448 5.565455 TGCATTGGAAAGAAAGGGAATTT 57.435 34.783 0.00 0.00 0.00 1.82
4881 11449 5.565455 TTGCATTGGAAAGAAAGGGAATT 57.435 34.783 0.00 0.00 0.00 2.17
4882 11450 5.248934 TCATTGCATTGGAAAGAAAGGGAAT 59.751 36.000 8.64 0.00 30.91 3.01
4883 11451 4.592351 TCATTGCATTGGAAAGAAAGGGAA 59.408 37.500 8.64 0.00 0.00 3.97
4884 11452 4.158786 TCATTGCATTGGAAAGAAAGGGA 58.841 39.130 8.64 0.00 0.00 4.20
4885 11453 4.540359 TCATTGCATTGGAAAGAAAGGG 57.460 40.909 8.64 0.00 0.00 3.95
4886 11454 5.107375 CGTTTCATTGCATTGGAAAGAAAGG 60.107 40.000 17.76 18.61 31.75 3.11
4887 11455 5.613142 GCGTTTCATTGCATTGGAAAGAAAG 60.613 40.000 17.76 13.64 31.75 2.62
4888 11456 4.210955 GCGTTTCATTGCATTGGAAAGAAA 59.789 37.500 16.61 14.63 31.75 2.52
4889 11457 3.740321 GCGTTTCATTGCATTGGAAAGAA 59.260 39.130 16.61 4.72 31.75 2.52
4890 11458 3.243670 TGCGTTTCATTGCATTGGAAAGA 60.244 39.130 16.61 0.00 35.90 2.52
4891 11459 3.058450 TGCGTTTCATTGCATTGGAAAG 58.942 40.909 10.19 10.19 35.90 2.62
4892 11460 3.103447 TGCGTTTCATTGCATTGGAAA 57.897 38.095 3.90 4.19 35.90 3.13
4893 11461 2.808523 TGCGTTTCATTGCATTGGAA 57.191 40.000 8.64 3.52 35.90 3.53
4894 11462 2.808523 TTGCGTTTCATTGCATTGGA 57.191 40.000 8.64 0.00 41.42 3.53
4895 11463 3.801293 CTTTTGCGTTTCATTGCATTGG 58.199 40.909 8.64 0.00 41.42 3.16
4896 11464 3.219981 GCTTTTGCGTTTCATTGCATTG 58.780 40.909 2.08 2.08 41.42 2.82
4897 11465 3.524763 GCTTTTGCGTTTCATTGCATT 57.475 38.095 0.00 0.00 41.42 3.56
4911 11479 3.361917 CGAGAAAACGCAAATGGCTTTTG 60.362 43.478 18.52 18.52 42.45 2.44
4912 11480 2.794350 CGAGAAAACGCAAATGGCTTTT 59.206 40.909 0.00 0.00 44.85 2.27
4913 11481 2.034053 TCGAGAAAACGCAAATGGCTTT 59.966 40.909 0.00 0.00 41.67 3.51
4914 11482 1.606668 TCGAGAAAACGCAAATGGCTT 59.393 42.857 0.00 0.00 41.67 4.35
4915 11483 1.234821 TCGAGAAAACGCAAATGGCT 58.765 45.000 0.00 0.00 41.67 4.75
4916 11484 2.044888 TTCGAGAAAACGCAAATGGC 57.955 45.000 0.00 0.00 39.90 4.40
4939 11507 9.815306 TCTGGCTGATCTATAAGACTAACTAAT 57.185 33.333 0.00 0.00 0.00 1.73
4940 11508 9.642343 TTCTGGCTGATCTATAAGACTAACTAA 57.358 33.333 0.00 0.00 0.00 2.24
4941 11509 9.290988 CTTCTGGCTGATCTATAAGACTAACTA 57.709 37.037 0.00 0.00 0.00 2.24
4942 11510 7.782644 ACTTCTGGCTGATCTATAAGACTAACT 59.217 37.037 0.00 0.00 0.00 2.24
4943 11511 7.865385 CACTTCTGGCTGATCTATAAGACTAAC 59.135 40.741 0.00 0.00 0.00 2.34
4944 11512 7.780271 TCACTTCTGGCTGATCTATAAGACTAA 59.220 37.037 0.00 0.00 0.00 2.24
4945 11513 7.290813 TCACTTCTGGCTGATCTATAAGACTA 58.709 38.462 0.00 0.00 0.00 2.59
4946 11514 6.132658 TCACTTCTGGCTGATCTATAAGACT 58.867 40.000 0.00 0.00 0.00 3.24
5026 11594 9.988815 ACTTGATCTGTTACTATAATCATCCAC 57.011 33.333 0.00 0.00 0.00 4.02
5272 11841 5.220491 GCCACAGAATTAAGATGACTTCGTC 60.220 44.000 0.00 0.00 37.53 4.20
5273 11842 4.631813 GCCACAGAATTAAGATGACTTCGT 59.368 41.667 0.00 0.00 37.53 3.85
5275 11844 6.749923 AAGCCACAGAATTAAGATGACTTC 57.250 37.500 0.00 0.00 37.53 3.01
5813 12389 4.030216 TGTCATAGAGGCACCATCAACTA 58.970 43.478 0.00 0.00 0.00 2.24
5844 12420 8.206189 TGATCATCATTTAAGTCAGCATCTGTA 58.794 33.333 0.00 0.00 32.61 2.74
6490 13066 2.625737 ACAATTCATCCACAGAGAGCG 58.374 47.619 0.00 0.00 0.00 5.03
6494 13070 5.936372 TCTGAAGAACAATTCATCCACAGAG 59.064 40.000 0.00 0.00 38.47 3.35
6497 13073 5.624159 AGTCTGAAGAACAATTCATCCACA 58.376 37.500 0.00 0.00 38.47 4.17
6714 13290 4.590850 TCTTGGGACATCTGATCATACG 57.409 45.455 0.00 0.00 39.30 3.06
6755 13332 6.186957 ACAAACCACACATACATACCATCAT 58.813 36.000 0.00 0.00 0.00 2.45
6756 13333 5.565509 ACAAACCACACATACATACCATCA 58.434 37.500 0.00 0.00 0.00 3.07
6757 13334 6.509418 AACAAACCACACATACATACCATC 57.491 37.500 0.00 0.00 0.00 3.51
6758 13335 6.909550 AAACAAACCACACATACATACCAT 57.090 33.333 0.00 0.00 0.00 3.55
6761 13338 7.644490 TCAGAAAACAAACCACACATACATAC 58.356 34.615 0.00 0.00 0.00 2.39
6762 13339 7.809546 TCAGAAAACAAACCACACATACATA 57.190 32.000 0.00 0.00 0.00 2.29
6763 13340 6.707440 TCAGAAAACAAACCACACATACAT 57.293 33.333 0.00 0.00 0.00 2.29
6764 13341 6.405286 CCTTCAGAAAACAAACCACACATACA 60.405 38.462 0.00 0.00 0.00 2.29
6765 13342 5.977129 CCTTCAGAAAACAAACCACACATAC 59.023 40.000 0.00 0.00 0.00 2.39
6911 13491 0.252467 CCCCATTGCCCTACCCAAAA 60.252 55.000 0.00 0.00 0.00 2.44
7064 13646 7.920682 GGTCTTGCTTTTCTAGTCAAAATTTGA 59.079 33.333 4.03 4.03 37.33 2.69
7128 13711 3.629398 GGAGCAGTTATGGAAGTTGGATG 59.371 47.826 0.00 0.00 0.00 3.51
7160 13743 4.607293 ATGCATCGAGAAGGCACTAATA 57.393 40.909 0.00 0.00 38.49 0.98
7190 13773 1.040893 TCGAGCCTCCTCCGCAAATA 61.041 55.000 0.00 0.00 34.49 1.40
7193 13776 2.759973 ATCGAGCCTCCTCCGCAA 60.760 61.111 0.00 0.00 34.49 4.85
7197 13780 1.068921 GCAAGATCGAGCCTCCTCC 59.931 63.158 0.00 0.00 34.49 4.30
7198 13781 1.299773 CGCAAGATCGAGCCTCCTC 60.300 63.158 0.00 0.00 43.02 3.71
7199 13782 2.055042 ACGCAAGATCGAGCCTCCT 61.055 57.895 0.00 0.00 43.62 3.69
7338 13927 5.283717 GCAATTTAGTAGATGTTTGTGCACG 59.716 40.000 13.13 0.00 0.00 5.34
7345 13934 7.710907 TGATAGAGCGCAATTTAGTAGATGTTT 59.289 33.333 11.47 0.00 0.00 2.83
7390 13979 4.329462 TGCAAGTTTTGGTATTGGGAAC 57.671 40.909 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.