Multiple sequence alignment - TraesCS1D01G121900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G121900 chr1D 100.000 7255 0 0 1 7255 122536387 122543641 0.000000e+00 13398.0
1 TraesCS1D01G121900 chr1D 87.500 56 3 3 6878 6929 122543205 122543260 2.190000e-05 62.1
2 TraesCS1D01G121900 chr1D 87.500 56 3 3 6819 6874 122543264 122543315 2.190000e-05 62.1
3 TraesCS1D01G121900 chr1B 93.970 3748 119 35 2844 6521 186461191 186464901 0.000000e+00 5570.0
4 TraesCS1D01G121900 chr1B 94.188 2856 133 12 1 2844 186458316 186461150 0.000000e+00 4324.0
5 TraesCS1D01G121900 chr1B 92.143 280 20 2 6977 7255 186485714 186485992 1.900000e-105 394.0
6 TraesCS1D01G121900 chr1B 83.891 329 16 9 6583 6876 186467258 186467584 5.540000e-71 279.0
7 TraesCS1D01G121900 chr1B 82.996 247 22 12 6751 6979 186467538 186467782 9.540000e-49 206.0
8 TraesCS1D01G121900 chr1B 100.000 47 0 0 6670 6716 186467289 186467335 3.610000e-13 87.9
9 TraesCS1D01G121900 chr1B 92.727 55 1 2 6878 6929 186467528 186467582 7.800000e-10 76.8
10 TraesCS1D01G121900 chr1B 92.727 55 1 2 6878 6929 186467615 186467669 7.800000e-10 76.8
11 TraesCS1D01G121900 chr1A 98.576 2879 34 6 2844 5717 133414588 133417464 0.000000e+00 5083.0
12 TraesCS1D01G121900 chr1A 98.606 1363 19 0 1432 2794 133412972 133414334 0.000000e+00 2412.0
13 TraesCS1D01G121900 chr1A 92.879 997 31 21 5715 6677 133417545 133418535 0.000000e+00 1411.0
14 TraesCS1D01G121900 chr1A 96.377 690 20 3 756 1444 133412253 133412938 0.000000e+00 1131.0
15 TraesCS1D01G121900 chr1A 87.250 549 59 7 42 587 133411685 133412225 3.720000e-172 616.0
16 TraesCS1D01G121900 chr1A 93.717 191 11 1 7066 7255 133992647 133992837 1.190000e-72 285.0
17 TraesCS1D01G121900 chr1A 80.851 188 17 6 6719 6900 133944034 133944208 5.910000e-26 130.0
18 TraesCS1D01G121900 chr1A 79.787 188 30 5 2940 3125 556114822 556115003 5.910000e-26 130.0
19 TraesCS1D01G121900 chr1A 98.246 57 1 0 2788 2844 133414491 133414547 4.630000e-17 100.0
20 TraesCS1D01G121900 chr1A 89.189 74 8 0 6902 6975 133945887 133945960 7.750000e-15 93.5
21 TraesCS1D01G121900 chr1A 95.652 46 2 0 6671 6716 133418474 133418519 2.810000e-09 75.0
22 TraesCS1D01G121900 chr1A 100.000 36 0 0 6839 6874 133945879 133945914 4.700000e-07 67.6
23 TraesCS1D01G121900 chr1A 78.899 109 12 6 6832 6929 133944068 133944176 6.080000e-06 63.9
24 TraesCS1D01G121900 chr3B 86.047 86 6 5 994 1076 114194871 114194953 3.610000e-13 87.9
25 TraesCS1D01G121900 chr3D 84.884 86 8 4 994 1077 67681590 67681508 1.680000e-11 82.4
26 TraesCS1D01G121900 chr5B 86.567 67 8 1 6913 6979 703265601 703265666 1.010000e-08 73.1
27 TraesCS1D01G121900 chr2A 88.462 52 6 0 6916 6967 514394842 514394791 6.080000e-06 63.9
28 TraesCS1D01G121900 chr5D 100.000 33 0 0 6777 6809 418480163 418480131 2.190000e-05 62.1
29 TraesCS1D01G121900 chr7D 100.000 32 0 0 6778 6809 256793355 256793386 7.860000e-05 60.2
30 TraesCS1D01G121900 chr7D 100.000 32 0 0 6778 6809 525177057 525177088 7.860000e-05 60.2
31 TraesCS1D01G121900 chr7B 100.000 32 0 0 6778 6809 46545237 46545206 7.860000e-05 60.2
32 TraesCS1D01G121900 chr7B 100.000 32 0 0 6778 6809 660478636 660478667 7.860000e-05 60.2
33 TraesCS1D01G121900 chr6B 100.000 32 0 0 6778 6809 524667399 524667430 7.860000e-05 60.2
34 TraesCS1D01G121900 chr6B 100.000 32 0 0 6778 6809 629530031 629530000 7.860000e-05 60.2
35 TraesCS1D01G121900 chr4D 100.000 32 0 0 6778 6809 93566900 93566931 7.860000e-05 60.2
36 TraesCS1D01G121900 chr7A 94.737 38 1 1 6772 6809 58006261 58006297 2.830000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G121900 chr1D 122536387 122543641 7254 False 4507.400000 13398 91.666667 1 7255 3 chr1D.!!$F1 7254
1 TraesCS1D01G121900 chr1B 186458316 186467782 9466 False 1517.214286 5570 91.499857 1 6979 7 chr1B.!!$F2 6978
2 TraesCS1D01G121900 chr1A 133411685 133418535 6850 False 1546.857143 5083 95.369429 42 6716 7 chr1A.!!$F3 6674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 699 0.388649 AACAGGTCAGATCGTGTCGC 60.389 55.000 0.00 0.00 35.78 5.19 F
1099 1111 0.788391 GAGTTCGTTCGCCGTGATTT 59.212 50.000 0.00 0.00 37.94 2.17 F
1879 1938 1.067516 ACTGATGGTTTGTGCACTTGC 59.932 47.619 19.41 7.44 42.50 4.01 F
2858 3122 1.107114 AGGCAGGAGATACACTGTCG 58.893 55.000 0.00 0.00 43.75 4.35 F
3193 3464 1.480789 TGGCTATAGCTGACGTTGGA 58.519 50.000 23.53 0.00 41.70 3.53 F
3199 3470 2.492019 TAGCTGACGTTGGATCATCG 57.508 50.000 0.00 0.00 33.50 3.84 F
4521 4820 2.180017 CCAAGCACATTCCGCAGC 59.820 61.111 0.00 0.00 0.00 5.25 F
5010 5313 1.383523 GCCAAGATAGAACTGGTGCC 58.616 55.000 0.00 0.00 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2661 2721 1.681264 ACCCAGCAACAGTAAGCAAAC 59.319 47.619 1.19 0.0 0.00 2.93 R
3098 3369 4.722361 TGCATGCATGTTGTGTCATATT 57.278 36.364 26.79 0.0 0.00 1.28 R
3193 3464 1.556911 ACAACAGCCTCTTCCGATGAT 59.443 47.619 0.00 0.0 0.00 2.45 R
4327 4600 1.144503 AGGGGGCAATCATCTGATCAC 59.855 52.381 0.00 0.0 32.75 3.06 R
4521 4820 2.804527 CACGGCATATCCATCTTGACAG 59.195 50.000 0.00 0.0 34.01 3.51 R
5010 5313 3.020026 CTGAAGAGCAGCCGCAACG 62.020 63.158 0.00 0.0 42.27 4.10 R
5959 6355 0.172578 TATCCGTGGTGCTGAGTTCG 59.827 55.000 0.00 0.0 0.00 3.95 R
6811 9653 0.032815 AAAAACGGCCGTCCATTTGG 59.967 50.000 34.29 0.0 26.81 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.876550 ACTTTTTACTCAGTCGGTTGGC 59.123 45.455 0.00 0.00 0.00 4.52
25 26 2.922740 TTTTACTCAGTCGGTTGGCT 57.077 45.000 0.00 0.00 0.00 4.75
46 47 5.415077 GGCTAGCGAGTAAATATAGGAGTCA 59.585 44.000 9.00 0.00 0.00 3.41
51 52 5.279056 GCGAGTAAATATAGGAGTCAAGGCT 60.279 44.000 0.00 0.00 0.00 4.58
53 54 6.239064 CGAGTAAATATAGGAGTCAAGGCTGT 60.239 42.308 0.00 0.00 0.00 4.40
174 175 7.396906 TTTATTAGGGGATCGATTAGGGTTT 57.603 36.000 0.00 0.00 0.00 3.27
192 194 3.059120 GGTTTCTCTTACGGTCTGTTTGC 60.059 47.826 0.00 0.00 0.00 3.68
222 224 4.264253 CACATCATCTTTTGCCTCACCTA 58.736 43.478 0.00 0.00 0.00 3.08
223 225 4.701651 CACATCATCTTTTGCCTCACCTAA 59.298 41.667 0.00 0.00 0.00 2.69
234 236 2.876079 GCCTCACCTAAAGTTGTCCCTG 60.876 54.545 0.00 0.00 0.00 4.45
271 273 6.663093 TGTTTGTTTGGTTGCTATCCTATGAT 59.337 34.615 0.00 0.00 34.87 2.45
280 282 9.866655 TGGTTGCTATCCTATGATAAAGAAAAT 57.133 29.630 0.00 0.00 33.13 1.82
285 287 8.940952 GCTATCCTATGATAAAGAAAATTCGCT 58.059 33.333 0.00 0.00 33.13 4.93
473 476 4.454504 CCGTTCTACATTTTTGCACCTACT 59.545 41.667 0.00 0.00 0.00 2.57
482 485 6.320164 ACATTTTTGCACCTACTAAACACAGA 59.680 34.615 0.00 0.00 0.00 3.41
494 497 4.812626 ACTAAACACAGAAACGAAACCGAT 59.187 37.500 0.00 0.00 0.00 4.18
497 500 1.126113 CACAGAAACGAAACCGATCCG 59.874 52.381 0.00 0.00 0.00 4.18
541 544 0.526211 TCTCGTGACATGGTTCCTCG 59.474 55.000 0.00 0.00 0.00 4.63
563 566 2.091885 ACCAAACACACCCTTCATCACT 60.092 45.455 0.00 0.00 0.00 3.41
575 579 2.113860 TCATCACTACAAAGCCTGGC 57.886 50.000 11.65 11.65 0.00 4.85
593 597 4.320456 CTGTCTGGCAGCACCGGT 62.320 66.667 10.34 0.00 46.11 5.28
611 615 1.673168 GTCATCCAAGCATGAGGGTC 58.327 55.000 0.00 0.00 33.29 4.46
690 695 2.455032 GATCGAACAGGTCAGATCGTG 58.545 52.381 0.00 0.00 35.61 4.35
694 699 0.388649 AACAGGTCAGATCGTGTCGC 60.389 55.000 0.00 0.00 35.78 5.19
696 701 2.178521 GGTCAGATCGTGTCGCGT 59.821 61.111 5.77 0.00 42.13 6.01
725 730 2.102633 GATAGAGCGAACGTTCACTCG 58.897 52.381 30.35 19.04 40.38 4.18
741 746 7.489113 ACGTTCACTCGTTATATTTTCCGTAAT 59.511 33.333 0.00 0.00 41.37 1.89
1087 1099 4.052229 CGCCCCTGTCGAGTTCGT 62.052 66.667 1.07 0.00 40.80 3.85
1099 1111 0.788391 GAGTTCGTTCGCCGTGATTT 59.212 50.000 0.00 0.00 37.94 2.17
1395 1407 8.257306 ACAAATTGGAAACTCAACTACAAACAT 58.743 29.630 0.00 0.00 0.00 2.71
1879 1938 1.067516 ACTGATGGTTTGTGCACTTGC 59.932 47.619 19.41 7.44 42.50 4.01
2075 2134 2.608090 GCTTCCGTGAACAGGTAATAGC 59.392 50.000 0.00 0.00 0.00 2.97
2180 2240 2.551459 GTTGCATCTGCTTTCTGTGTCT 59.449 45.455 3.53 0.00 42.66 3.41
2388 2448 5.820423 GCTGAGTTCTCTATAGTCTGTCTGA 59.180 44.000 0.00 0.00 0.00 3.27
2398 2458 7.451732 TCTATAGTCTGTCTGATAGTGGGTAC 58.548 42.308 0.00 0.00 0.00 3.34
2597 2657 1.383523 GGGCTAATGAGGTCTGTTGC 58.616 55.000 0.00 0.00 0.00 4.17
2650 2710 9.754382 CTCTGTAGTTTTGTAAAGTGTTACCTA 57.246 33.333 0.00 0.00 39.16 3.08
2855 3119 3.865745 CGTTTTAGGCAGGAGATACACTG 59.134 47.826 0.00 0.00 37.76 3.66
2858 3122 1.107114 AGGCAGGAGATACACTGTCG 58.893 55.000 0.00 0.00 43.75 4.35
2897 3161 6.198650 CAGAATGTAAATGCACCATTGAGA 57.801 37.500 7.28 0.00 34.04 3.27
3098 3369 6.430616 TCATGTGAGTTCATTTGATAAGCACA 59.569 34.615 0.00 0.00 38.00 4.57
3193 3464 1.480789 TGGCTATAGCTGACGTTGGA 58.519 50.000 23.53 0.00 41.70 3.53
3199 3470 2.492019 TAGCTGACGTTGGATCATCG 57.508 50.000 0.00 0.00 33.50 3.84
3626 3897 4.084433 CCAATTCGCAAAGGACAAACATTG 60.084 41.667 0.00 0.00 0.00 2.82
3918 4189 8.632679 TCAAAGTTGATCATAGCTCTTGTTTTT 58.367 29.630 0.00 0.00 31.01 1.94
4351 4624 4.851540 TGATCAGATGATTGCCCCCTTATA 59.148 41.667 0.00 0.00 34.37 0.98
4521 4820 2.180017 CCAAGCACATTCCGCAGC 59.820 61.111 0.00 0.00 0.00 5.25
5010 5313 1.383523 GCCAAGATAGAACTGGTGCC 58.616 55.000 0.00 0.00 0.00 5.01
5187 5490 9.900710 ATGCGTAATTTGTTTACTTGTAAATCA 57.099 25.926 8.87 6.77 38.44 2.57
5650 5956 6.490566 AAATTGTAATCTGAACACGTACCC 57.509 37.500 0.00 0.00 0.00 3.69
5795 6191 7.472334 AAGAGTATCCTGCATTGTTTTTGAT 57.528 32.000 0.00 0.00 33.66 2.57
5916 6312 7.327032 GTCAAATTAAGCAAACAGTGGATCTTC 59.673 37.037 0.00 0.00 0.00 2.87
5959 6355 5.473039 CAGAATTTGAAGAACATCAACCCC 58.527 41.667 0.00 0.00 38.95 4.95
6200 6627 2.352032 GGAGTCTGCTGCCTACCGT 61.352 63.158 0.00 0.00 0.00 4.83
6233 6660 1.096416 CTCCTGTAGACGTGGACTCC 58.904 60.000 0.00 0.00 0.00 3.85
6328 6756 3.766591 AGTAGGCATCCGATCTATCTTGG 59.233 47.826 0.00 0.00 0.00 3.61
6357 6785 1.349026 ACTGTTGAGGTGTGATCCCTG 59.651 52.381 0.00 0.00 30.60 4.45
6362 6791 0.535335 GAGGTGTGATCCCTGCGTTA 59.465 55.000 0.00 0.00 30.60 3.18
6424 6853 4.517453 AGGTAATGTTTGCTTTGCTACGAA 59.483 37.500 0.00 0.00 0.00 3.85
6525 7075 7.254227 TCGGAATTACAAAGCATACATTACC 57.746 36.000 0.00 0.00 0.00 2.85
6560 7110 7.254227 TGAACCATTAAATGACTAATACCGC 57.746 36.000 0.00 0.00 0.00 5.68
6579 7129 1.742761 CCACAGAATGAGCCGTTGAT 58.257 50.000 0.00 0.00 39.69 2.57
6583 7133 1.063616 CAGAATGAGCCGTTGATGCTG 59.936 52.381 0.00 0.00 39.69 4.41
6588 7138 2.124736 GCCGTTGATGCTGCCCTA 60.125 61.111 0.00 0.00 0.00 3.53
6589 7139 2.182842 GCCGTTGATGCTGCCCTAG 61.183 63.158 0.00 0.00 0.00 3.02
6590 7140 1.522092 CCGTTGATGCTGCCCTAGA 59.478 57.895 0.00 0.00 0.00 2.43
6592 7142 1.156645 CGTTGATGCTGCCCTAGAGC 61.157 60.000 0.00 0.00 36.95 4.09
6593 7143 0.179936 GTTGATGCTGCCCTAGAGCT 59.820 55.000 0.00 0.00 37.35 4.09
6594 7144 1.414181 GTTGATGCTGCCCTAGAGCTA 59.586 52.381 0.00 0.00 37.35 3.32
6595 7145 2.021262 TGATGCTGCCCTAGAGCTAT 57.979 50.000 0.00 0.00 37.35 2.97
6596 7146 3.175438 TGATGCTGCCCTAGAGCTATA 57.825 47.619 0.00 0.00 37.35 1.31
6602 9369 3.322254 GCTGCCCTAGAGCTATAAGTTCA 59.678 47.826 0.00 0.00 33.37 3.18
6613 9380 4.593634 AGCTATAAGTTCACCCTCCCATAC 59.406 45.833 0.00 0.00 0.00 2.39
6620 9387 1.046472 CACCCTCCCATACCGTAGCA 61.046 60.000 0.00 0.00 0.00 3.49
6621 9388 0.759436 ACCCTCCCATACCGTAGCAG 60.759 60.000 0.00 0.00 0.00 4.24
6622 9389 1.472662 CCCTCCCATACCGTAGCAGG 61.473 65.000 0.00 0.00 37.30 4.85
6623 9390 1.367840 CTCCCATACCGTAGCAGGC 59.632 63.158 0.00 0.00 33.69 4.85
6624 9391 2.100879 CTCCCATACCGTAGCAGGCC 62.101 65.000 0.00 0.00 33.69 5.19
6625 9392 2.140792 CCCATACCGTAGCAGGCCT 61.141 63.158 0.00 0.00 33.69 5.19
6626 9393 1.069765 CCATACCGTAGCAGGCCTG 59.930 63.158 29.34 29.34 33.69 4.85
6627 9394 1.686325 CCATACCGTAGCAGGCCTGT 61.686 60.000 32.81 21.44 33.69 4.00
6628 9395 0.249489 CATACCGTAGCAGGCCTGTC 60.249 60.000 32.81 24.09 33.69 3.51
6629 9396 0.397254 ATACCGTAGCAGGCCTGTCT 60.397 55.000 32.81 28.92 33.69 3.41
6630 9397 0.613853 TACCGTAGCAGGCCTGTCTT 60.614 55.000 32.81 20.73 33.69 3.01
6631 9398 1.296715 CCGTAGCAGGCCTGTCTTT 59.703 57.895 32.81 18.36 0.00 2.52
6632 9399 1.021390 CCGTAGCAGGCCTGTCTTTG 61.021 60.000 32.81 22.02 0.00 2.77
6633 9400 0.320771 CGTAGCAGGCCTGTCTTTGT 60.321 55.000 32.81 13.64 0.00 2.83
6634 9401 1.160137 GTAGCAGGCCTGTCTTTGTG 58.840 55.000 32.81 7.34 0.00 3.33
6635 9402 0.606401 TAGCAGGCCTGTCTTTGTGC 60.606 55.000 32.81 17.51 0.00 4.57
6636 9403 2.195567 GCAGGCCTGTCTTTGTGCA 61.196 57.895 32.81 0.00 0.00 4.57
6637 9404 1.530013 GCAGGCCTGTCTTTGTGCAT 61.530 55.000 32.81 0.00 0.00 3.96
6638 9405 0.242825 CAGGCCTGTCTTTGTGCATG 59.757 55.000 25.53 0.00 0.00 4.06
6639 9406 1.080298 GGCCTGTCTTTGTGCATGC 60.080 57.895 11.82 11.82 0.00 4.06
6640 9407 1.443194 GCCTGTCTTTGTGCATGCG 60.443 57.895 14.09 0.00 0.00 4.73
6641 9408 1.951510 CCTGTCTTTGTGCATGCGT 59.048 52.632 14.09 0.00 0.00 5.24
6642 9409 0.110056 CCTGTCTTTGTGCATGCGTC 60.110 55.000 14.09 9.43 0.00 5.19
6643 9410 0.110056 CTGTCTTTGTGCATGCGTCC 60.110 55.000 14.09 3.96 0.00 4.79
6644 9411 0.534877 TGTCTTTGTGCATGCGTCCT 60.535 50.000 14.09 0.00 0.00 3.85
6645 9412 0.166814 GTCTTTGTGCATGCGTCCTC 59.833 55.000 14.09 1.67 0.00 3.71
6646 9413 0.035317 TCTTTGTGCATGCGTCCTCT 59.965 50.000 14.09 0.00 0.00 3.69
6647 9414 0.167470 CTTTGTGCATGCGTCCTCTG 59.833 55.000 14.09 0.00 0.00 3.35
6648 9415 0.250252 TTTGTGCATGCGTCCTCTGA 60.250 50.000 14.09 0.00 0.00 3.27
6649 9416 0.036105 TTGTGCATGCGTCCTCTGAT 60.036 50.000 14.09 0.00 0.00 2.90
6650 9417 0.741927 TGTGCATGCGTCCTCTGATG 60.742 55.000 14.09 0.00 0.00 3.07
6651 9418 0.460811 GTGCATGCGTCCTCTGATGA 60.461 55.000 14.09 0.00 0.00 2.92
6652 9419 0.460811 TGCATGCGTCCTCTGATGAC 60.461 55.000 14.09 3.32 0.00 3.06
6653 9420 1.156645 GCATGCGTCCTCTGATGACC 61.157 60.000 0.00 2.26 0.00 4.02
6654 9421 0.176449 CATGCGTCCTCTGATGACCA 59.824 55.000 7.38 6.99 0.00 4.02
6655 9422 0.904649 ATGCGTCCTCTGATGACCAA 59.095 50.000 7.38 0.00 0.00 3.67
6656 9423 0.037326 TGCGTCCTCTGATGACCAAC 60.037 55.000 7.38 0.00 0.00 3.77
6657 9424 1.078759 GCGTCCTCTGATGACCAACG 61.079 60.000 7.38 0.00 0.00 4.10
6658 9425 1.078759 CGTCCTCTGATGACCAACGC 61.079 60.000 7.38 0.00 0.00 4.84
6659 9426 0.247736 GTCCTCTGATGACCAACGCT 59.752 55.000 2.07 0.00 0.00 5.07
6660 9427 1.476891 GTCCTCTGATGACCAACGCTA 59.523 52.381 2.07 0.00 0.00 4.26
6661 9428 1.476891 TCCTCTGATGACCAACGCTAC 59.523 52.381 0.00 0.00 0.00 3.58
6662 9429 1.471676 CCTCTGATGACCAACGCTACC 60.472 57.143 0.00 0.00 0.00 3.18
6663 9430 1.478510 CTCTGATGACCAACGCTACCT 59.521 52.381 0.00 0.00 0.00 3.08
6664 9431 2.688446 CTCTGATGACCAACGCTACCTA 59.312 50.000 0.00 0.00 0.00 3.08
6665 9432 2.688446 TCTGATGACCAACGCTACCTAG 59.312 50.000 0.00 0.00 0.00 3.02
6666 9433 2.688446 CTGATGACCAACGCTACCTAGA 59.312 50.000 0.00 0.00 0.00 2.43
6667 9434 2.688446 TGATGACCAACGCTACCTAGAG 59.312 50.000 0.00 0.00 0.00 2.43
6668 9435 0.815734 TGACCAACGCTACCTAGAGC 59.184 55.000 0.00 0.00 39.20 4.09
6669 9436 1.104630 GACCAACGCTACCTAGAGCT 58.895 55.000 2.31 0.00 40.51 4.09
6670 9437 0.818296 ACCAACGCTACCTAGAGCTG 59.182 55.000 0.00 0.00 40.51 4.24
6671 9438 0.818296 CCAACGCTACCTAGAGCTGT 59.182 55.000 0.00 0.00 40.51 4.40
6672 9439 2.022195 CCAACGCTACCTAGAGCTGTA 58.978 52.381 0.00 0.00 40.51 2.74
6673 9440 2.033550 CCAACGCTACCTAGAGCTGTAG 59.966 54.545 10.93 10.93 40.51 2.74
6778 9609 7.797121 TTGATGGCATAAGAGAGGTCATATA 57.203 36.000 0.00 0.00 0.00 0.86
6785 9616 7.213678 GCATAAGAGAGGTCATATATAAGGCC 58.786 42.308 0.13 0.13 0.00 5.19
6798 9640 0.887387 TAAGGCCAACTCCAACGCAC 60.887 55.000 5.01 0.00 0.00 5.34
6810 9652 3.409605 AACGCACGACCCCAAACCT 62.410 57.895 0.00 0.00 0.00 3.50
6811 9653 3.047877 CGCACGACCCCAAACCTC 61.048 66.667 0.00 0.00 0.00 3.85
6824 9666 0.898326 AAACCTCCAAATGGACGGCC 60.898 55.000 0.00 0.00 39.78 6.13
6876 9732 2.570302 GTCTAAGGCCAACTCTAACCCA 59.430 50.000 5.01 0.00 0.00 4.51
6895 9780 2.357637 CCAGACGGCTGTTTCTTTTGAA 59.642 45.455 18.99 0.00 40.63 2.69
6900 9785 2.481104 CGGCTGTTTCTTTTGAAGGCAA 60.481 45.455 0.00 0.00 39.88 4.52
6930 9882 2.895404 TGTCTAAGGCCAACTCTAACGT 59.105 45.455 5.01 0.00 0.00 3.99
6936 9888 4.323553 AGGCCAACTCTAACGTATGATC 57.676 45.455 5.01 0.00 0.00 2.92
6938 9890 3.391049 GCCAACTCTAACGTATGATCCC 58.609 50.000 0.00 0.00 0.00 3.85
6942 9894 5.293569 CCAACTCTAACGTATGATCCCAAAC 59.706 44.000 0.00 0.00 0.00 2.93
6975 9927 7.547370 TCGTTTTGTCTGAATTTTGTCCATTTT 59.453 29.630 0.00 0.00 0.00 1.82
6978 9930 5.609423 TGTCTGAATTTTGTCCATTTTGGG 58.391 37.500 0.00 0.00 38.32 4.12
6979 9931 5.365025 TGTCTGAATTTTGTCCATTTTGGGA 59.635 36.000 0.00 0.00 38.32 4.37
6990 9942 5.732331 TCCATTTTGGGACTATGAATCCT 57.268 39.130 0.00 0.00 38.32 3.24
6991 9943 5.694995 TCCATTTTGGGACTATGAATCCTC 58.305 41.667 0.00 0.00 38.32 3.71
6992 9944 5.433051 TCCATTTTGGGACTATGAATCCTCT 59.567 40.000 0.00 0.00 38.32 3.69
6993 9945 6.619437 TCCATTTTGGGACTATGAATCCTCTA 59.381 38.462 0.00 0.00 38.32 2.43
6994 9946 7.128728 TCCATTTTGGGACTATGAATCCTCTAA 59.871 37.037 0.00 0.00 38.32 2.10
6995 9947 7.779798 CCATTTTGGGACTATGAATCCTCTAAA 59.220 37.037 0.00 0.00 36.40 1.85
6996 9948 9.359653 CATTTTGGGACTATGAATCCTCTAAAT 57.640 33.333 0.00 0.00 36.40 1.40
7022 9974 7.578310 ATTGATGAACTTATCAACCTGATGG 57.422 36.000 3.57 0.00 46.44 3.51
7023 9975 4.883585 TGATGAACTTATCAACCTGATGGC 59.116 41.667 0.00 0.00 42.54 4.40
7024 9976 4.299586 TGAACTTATCAACCTGATGGCA 57.700 40.909 0.00 0.00 37.70 4.92
7025 9977 4.009675 TGAACTTATCAACCTGATGGCAC 58.990 43.478 0.00 0.00 37.70 5.01
7026 9978 4.506448 TGAACTTATCAACCTGATGGCACA 60.506 41.667 0.00 0.00 37.70 4.57
7027 9979 6.547322 TGAACTTATCAACCTGATGGCACAC 61.547 44.000 0.00 0.00 37.70 3.82
7037 9989 2.282110 TGGCACACCAACGGGATG 60.282 61.111 0.00 0.00 45.37 3.51
7038 9990 2.033448 GGCACACCAACGGGATGA 59.967 61.111 0.00 0.00 38.05 2.92
7039 9991 1.602323 GGCACACCAACGGGATGAA 60.602 57.895 0.00 0.00 38.05 2.57
7040 9992 1.586154 GGCACACCAACGGGATGAAG 61.586 60.000 0.00 0.00 38.05 3.02
7041 9993 1.875963 CACACCAACGGGATGAAGC 59.124 57.895 0.00 0.00 38.05 3.86
7042 9994 0.606401 CACACCAACGGGATGAAGCT 60.606 55.000 0.00 0.00 38.05 3.74
7043 9995 0.981183 ACACCAACGGGATGAAGCTA 59.019 50.000 0.00 0.00 38.05 3.32
7044 9996 1.559682 ACACCAACGGGATGAAGCTAT 59.440 47.619 0.00 0.00 38.05 2.97
7045 9997 2.026262 ACACCAACGGGATGAAGCTATT 60.026 45.455 0.00 0.00 38.05 1.73
7046 9998 3.199071 ACACCAACGGGATGAAGCTATTA 59.801 43.478 0.00 0.00 38.05 0.98
7047 9999 4.141482 ACACCAACGGGATGAAGCTATTAT 60.141 41.667 0.00 0.00 38.05 1.28
7048 10000 4.452455 CACCAACGGGATGAAGCTATTATC 59.548 45.833 0.00 0.00 38.05 1.75
7049 10001 4.003648 CCAACGGGATGAAGCTATTATCC 58.996 47.826 12.92 12.92 39.69 2.59
7050 10002 3.594603 ACGGGATGAAGCTATTATCCG 57.405 47.619 13.70 13.70 41.00 4.18
7051 10003 2.233922 ACGGGATGAAGCTATTATCCGG 59.766 50.000 20.36 20.36 43.18 5.14
7052 10004 2.418746 CGGGATGAAGCTATTATCCGGG 60.419 54.545 16.90 9.55 41.00 5.73
7053 10005 2.838202 GGGATGAAGCTATTATCCGGGA 59.162 50.000 0.00 0.00 41.00 5.14
7054 10006 3.369576 GGGATGAAGCTATTATCCGGGAC 60.370 52.174 0.00 0.00 41.00 4.46
7055 10007 3.260884 GGATGAAGCTATTATCCGGGACA 59.739 47.826 0.00 0.00 31.89 4.02
7056 10008 4.262894 GGATGAAGCTATTATCCGGGACAA 60.263 45.833 0.00 0.00 31.89 3.18
7057 10009 4.974645 TGAAGCTATTATCCGGGACAAT 57.025 40.909 5.76 5.76 0.00 2.71
7058 10010 5.304686 TGAAGCTATTATCCGGGACAATT 57.695 39.130 5.76 0.00 0.00 2.32
7059 10011 5.305585 TGAAGCTATTATCCGGGACAATTC 58.694 41.667 5.76 0.00 0.00 2.17
7060 10012 4.287766 AGCTATTATCCGGGACAATTCC 57.712 45.455 5.76 0.00 41.95 3.01
7061 10013 3.650942 AGCTATTATCCGGGACAATTCCA 59.349 43.478 5.76 0.00 44.98 3.53
7062 10014 4.289672 AGCTATTATCCGGGACAATTCCAT 59.710 41.667 5.76 0.00 44.98 3.41
7063 10015 5.010282 GCTATTATCCGGGACAATTCCATT 58.990 41.667 5.76 0.00 44.98 3.16
7064 10016 5.106157 GCTATTATCCGGGACAATTCCATTG 60.106 44.000 5.76 0.00 44.98 2.82
7065 10017 4.511786 TTATCCGGGACAATTCCATTGA 57.488 40.909 0.00 0.00 44.98 2.57
7066 10018 2.418368 TCCGGGACAATTCCATTGAG 57.582 50.000 0.00 0.00 44.98 3.02
7067 10019 0.740737 CCGGGACAATTCCATTGAGC 59.259 55.000 3.47 0.00 44.98 4.26
7068 10020 0.378257 CGGGACAATTCCATTGAGCG 59.622 55.000 3.47 0.00 44.98 5.03
7069 10021 0.101219 GGGACAATTCCATTGAGCGC 59.899 55.000 0.00 0.00 44.98 5.92
7070 10022 0.810648 GGACAATTCCATTGAGCGCA 59.189 50.000 11.47 0.00 42.83 6.09
7071 10023 1.406539 GGACAATTCCATTGAGCGCAT 59.593 47.619 11.47 0.00 42.83 4.73
7072 10024 2.618241 GGACAATTCCATTGAGCGCATA 59.382 45.455 11.47 0.00 42.83 3.14
7073 10025 3.304257 GGACAATTCCATTGAGCGCATAG 60.304 47.826 11.47 0.00 42.83 2.23
7074 10026 3.282021 ACAATTCCATTGAGCGCATAGT 58.718 40.909 11.47 0.00 42.83 2.12
7075 10027 3.696051 ACAATTCCATTGAGCGCATAGTT 59.304 39.130 11.47 0.00 42.83 2.24
7076 10028 3.976793 ATTCCATTGAGCGCATAGTTG 57.023 42.857 11.47 0.00 0.00 3.16
7077 10029 1.667236 TCCATTGAGCGCATAGTTGG 58.333 50.000 11.47 10.12 0.00 3.77
7078 10030 1.065491 TCCATTGAGCGCATAGTTGGT 60.065 47.619 11.47 0.00 0.00 3.67
7079 10031 1.745087 CCATTGAGCGCATAGTTGGTT 59.255 47.619 11.47 0.00 0.00 3.67
7080 10032 2.478370 CCATTGAGCGCATAGTTGGTTG 60.478 50.000 11.47 0.00 0.00 3.77
7081 10033 2.177394 TTGAGCGCATAGTTGGTTGA 57.823 45.000 11.47 0.00 0.00 3.18
7082 10034 1.725641 TGAGCGCATAGTTGGTTGAG 58.274 50.000 11.47 0.00 0.00 3.02
7083 10035 1.009829 GAGCGCATAGTTGGTTGAGG 58.990 55.000 11.47 0.00 0.00 3.86
7084 10036 0.613260 AGCGCATAGTTGGTTGAGGA 59.387 50.000 11.47 0.00 0.00 3.71
7085 10037 1.210478 AGCGCATAGTTGGTTGAGGAT 59.790 47.619 11.47 0.00 0.00 3.24
7086 10038 2.017049 GCGCATAGTTGGTTGAGGATT 58.983 47.619 0.30 0.00 0.00 3.01
7087 10039 2.423538 GCGCATAGTTGGTTGAGGATTT 59.576 45.455 0.30 0.00 0.00 2.17
7088 10040 3.119495 GCGCATAGTTGGTTGAGGATTTT 60.119 43.478 0.30 0.00 0.00 1.82
7089 10041 4.414852 CGCATAGTTGGTTGAGGATTTTG 58.585 43.478 0.00 0.00 0.00 2.44
7090 10042 4.082787 CGCATAGTTGGTTGAGGATTTTGT 60.083 41.667 0.00 0.00 0.00 2.83
7091 10043 5.123186 CGCATAGTTGGTTGAGGATTTTGTA 59.877 40.000 0.00 0.00 0.00 2.41
7092 10044 6.555315 GCATAGTTGGTTGAGGATTTTGTAG 58.445 40.000 0.00 0.00 0.00 2.74
7093 10045 6.555315 CATAGTTGGTTGAGGATTTTGTAGC 58.445 40.000 0.00 0.00 0.00 3.58
7094 10046 4.729868 AGTTGGTTGAGGATTTTGTAGCT 58.270 39.130 0.00 0.00 0.00 3.32
7095 10047 5.140454 AGTTGGTTGAGGATTTTGTAGCTT 58.860 37.500 0.00 0.00 0.00 3.74
7096 10048 5.010012 AGTTGGTTGAGGATTTTGTAGCTTG 59.990 40.000 0.00 0.00 0.00 4.01
7097 10049 3.826157 TGGTTGAGGATTTTGTAGCTTGG 59.174 43.478 0.00 0.00 0.00 3.61
7098 10050 3.826729 GGTTGAGGATTTTGTAGCTTGGT 59.173 43.478 0.00 0.00 0.00 3.67
7099 10051 5.007682 GGTTGAGGATTTTGTAGCTTGGTA 58.992 41.667 0.00 0.00 0.00 3.25
7100 10052 5.652452 GGTTGAGGATTTTGTAGCTTGGTAT 59.348 40.000 0.00 0.00 0.00 2.73
7101 10053 6.826741 GGTTGAGGATTTTGTAGCTTGGTATA 59.173 38.462 0.00 0.00 0.00 1.47
7102 10054 7.338449 GGTTGAGGATTTTGTAGCTTGGTATAA 59.662 37.037 0.00 0.00 0.00 0.98
7103 10055 8.736244 GTTGAGGATTTTGTAGCTTGGTATAAA 58.264 33.333 0.00 0.00 0.00 1.40
7104 10056 8.871629 TGAGGATTTTGTAGCTTGGTATAAAA 57.128 30.769 13.71 13.71 30.50 1.52
7105 10057 8.736244 TGAGGATTTTGTAGCTTGGTATAAAAC 58.264 33.333 13.66 9.44 29.19 2.43
7106 10058 7.758495 AGGATTTTGTAGCTTGGTATAAAACG 58.242 34.615 13.66 0.00 29.19 3.60
7107 10059 7.608761 AGGATTTTGTAGCTTGGTATAAAACGA 59.391 33.333 13.66 0.00 29.19 3.85
7108 10060 8.238631 GGATTTTGTAGCTTGGTATAAAACGAA 58.761 33.333 13.66 0.00 29.19 3.85
7109 10061 9.274065 GATTTTGTAGCTTGGTATAAAACGAAG 57.726 33.333 13.66 0.00 44.35 3.79
7111 10063 6.956299 TGTAGCTTGGTATAAAACGAAGTC 57.044 37.500 0.00 0.00 45.00 3.01
7112 10064 6.457355 TGTAGCTTGGTATAAAACGAAGTCA 58.543 36.000 0.00 0.00 45.00 3.41
7113 10065 5.857822 AGCTTGGTATAAAACGAAGTCAC 57.142 39.130 0.00 0.00 45.00 3.67
7114 10066 5.302360 AGCTTGGTATAAAACGAAGTCACA 58.698 37.500 0.00 0.00 45.00 3.58
7115 10067 5.938125 AGCTTGGTATAAAACGAAGTCACAT 59.062 36.000 0.00 0.00 45.00 3.21
7116 10068 6.430000 AGCTTGGTATAAAACGAAGTCACATT 59.570 34.615 0.00 0.00 45.00 2.71
7117 10069 6.523201 GCTTGGTATAAAACGAAGTCACATTG 59.477 38.462 0.00 0.00 45.00 2.82
7118 10070 7.499321 TTGGTATAAAACGAAGTCACATTGT 57.501 32.000 0.00 0.00 45.00 2.71
7119 10071 7.499321 TGGTATAAAACGAAGTCACATTGTT 57.501 32.000 0.00 0.00 45.00 2.83
7120 10072 7.932335 TGGTATAAAACGAAGTCACATTGTTT 58.068 30.769 0.00 0.00 45.00 2.83
7121 10073 8.071368 TGGTATAAAACGAAGTCACATTGTTTC 58.929 33.333 0.00 0.00 45.00 2.78
7122 10074 8.071368 GGTATAAAACGAAGTCACATTGTTTCA 58.929 33.333 0.00 0.00 45.00 2.69
7123 10075 9.607285 GTATAAAACGAAGTCACATTGTTTCAT 57.393 29.630 0.00 0.00 45.00 2.57
7124 10076 6.810888 AAAACGAAGTCACATTGTTTCATG 57.189 33.333 0.00 0.00 45.00 3.07
7125 10077 5.499139 AACGAAGTCACATTGTTTCATGT 57.501 34.783 0.00 0.00 45.00 3.21
7126 10078 5.499139 ACGAAGTCACATTGTTTCATGTT 57.501 34.783 0.00 0.00 29.74 2.71
7127 10079 5.273170 ACGAAGTCACATTGTTTCATGTTG 58.727 37.500 0.00 0.00 29.74 3.33
7128 10080 5.065859 ACGAAGTCACATTGTTTCATGTTGA 59.934 36.000 0.00 0.00 29.74 3.18
7129 10081 5.970612 CGAAGTCACATTGTTTCATGTTGAA 59.029 36.000 0.00 0.00 34.03 2.69
7130 10082 6.638063 CGAAGTCACATTGTTTCATGTTGAAT 59.362 34.615 0.00 0.00 36.11 2.57
7131 10083 7.357777 CGAAGTCACATTGTTTCATGTTGAATG 60.358 37.037 0.00 0.00 36.11 2.67
7132 10084 6.218019 AGTCACATTGTTTCATGTTGAATGG 58.782 36.000 0.00 0.00 36.11 3.16
7133 10085 5.406175 GTCACATTGTTTCATGTTGAATGGG 59.594 40.000 0.00 0.00 36.11 4.00
7134 10086 5.303845 TCACATTGTTTCATGTTGAATGGGA 59.696 36.000 9.08 9.08 36.11 4.37
7135 10087 5.636121 CACATTGTTTCATGTTGAATGGGAG 59.364 40.000 0.00 0.00 36.11 4.30
7136 10088 3.940209 TGTTTCATGTTGAATGGGAGC 57.060 42.857 0.00 0.00 36.11 4.70
7137 10089 3.229293 TGTTTCATGTTGAATGGGAGCA 58.771 40.909 0.00 0.00 36.11 4.26
7138 10090 3.833650 TGTTTCATGTTGAATGGGAGCAT 59.166 39.130 0.00 0.00 36.11 3.79
7139 10091 4.082081 TGTTTCATGTTGAATGGGAGCATC 60.082 41.667 0.00 0.00 36.11 3.91
7140 10092 3.369242 TCATGTTGAATGGGAGCATCA 57.631 42.857 0.00 0.00 36.25 3.07
7141 10093 3.284617 TCATGTTGAATGGGAGCATCAG 58.715 45.455 0.00 0.00 36.25 2.90
7142 10094 2.885135 TGTTGAATGGGAGCATCAGT 57.115 45.000 0.00 0.00 36.25 3.41
7143 10095 3.159213 TGTTGAATGGGAGCATCAGTT 57.841 42.857 0.00 0.00 36.25 3.16
7144 10096 3.499338 TGTTGAATGGGAGCATCAGTTT 58.501 40.909 0.00 0.00 36.25 2.66
7145 10097 3.256383 TGTTGAATGGGAGCATCAGTTTG 59.744 43.478 0.00 0.00 36.25 2.93
7146 10098 1.820519 TGAATGGGAGCATCAGTTTGC 59.179 47.619 0.00 0.00 43.09 3.68
7161 10113 9.875675 GCATCAGTTTGCTAATAGATTTAGAAG 57.124 33.333 0.00 0.00 39.57 2.85
7174 10126 9.906660 AATAGATTTAGAAGAGATGATGTCGAC 57.093 33.333 9.11 9.11 0.00 4.20
7175 10127 6.744112 AGATTTAGAAGAGATGATGTCGACC 58.256 40.000 14.12 0.00 0.00 4.79
7176 10128 4.920640 TTAGAAGAGATGATGTCGACCC 57.079 45.455 14.12 5.58 0.00 4.46
7177 10129 2.035632 AGAAGAGATGATGTCGACCCC 58.964 52.381 14.12 5.19 0.00 4.95
7178 10130 2.035632 GAAGAGATGATGTCGACCCCT 58.964 52.381 14.12 2.59 0.00 4.79
7179 10131 2.166907 AGAGATGATGTCGACCCCTT 57.833 50.000 14.12 2.79 0.00 3.95
7180 10132 1.759445 AGAGATGATGTCGACCCCTTG 59.241 52.381 14.12 0.00 0.00 3.61
7181 10133 1.757118 GAGATGATGTCGACCCCTTGA 59.243 52.381 14.12 0.00 0.00 3.02
7182 10134 1.759445 AGATGATGTCGACCCCTTGAG 59.241 52.381 14.12 0.00 0.00 3.02
7183 10135 0.179000 ATGATGTCGACCCCTTGAGC 59.821 55.000 14.12 0.00 0.00 4.26
7184 10136 1.191489 TGATGTCGACCCCTTGAGCA 61.191 55.000 14.12 0.00 0.00 4.26
7185 10137 0.460987 GATGTCGACCCCTTGAGCAG 60.461 60.000 14.12 0.00 0.00 4.24
7186 10138 1.194781 ATGTCGACCCCTTGAGCAGT 61.195 55.000 14.12 0.00 0.00 4.40
7187 10139 0.541063 TGTCGACCCCTTGAGCAGTA 60.541 55.000 14.12 0.00 0.00 2.74
7188 10140 0.606604 GTCGACCCCTTGAGCAGTAA 59.393 55.000 3.51 0.00 0.00 2.24
7189 10141 0.606604 TCGACCCCTTGAGCAGTAAC 59.393 55.000 0.00 0.00 0.00 2.50
7190 10142 0.391263 CGACCCCTTGAGCAGTAACC 60.391 60.000 0.00 0.00 0.00 2.85
7191 10143 0.984995 GACCCCTTGAGCAGTAACCT 59.015 55.000 0.00 0.00 0.00 3.50
7192 10144 0.693049 ACCCCTTGAGCAGTAACCTG 59.307 55.000 0.00 0.00 41.91 4.00
7204 10156 4.871933 CAGTAACCTGCTTGGGAAATTT 57.128 40.909 0.00 0.00 41.11 1.82
7205 10157 5.213891 CAGTAACCTGCTTGGGAAATTTT 57.786 39.130 0.00 0.00 41.11 1.82
7206 10158 4.990426 CAGTAACCTGCTTGGGAAATTTTG 59.010 41.667 0.00 0.00 41.11 2.44
7207 10159 4.653801 AGTAACCTGCTTGGGAAATTTTGT 59.346 37.500 0.00 0.00 41.11 2.83
7208 10160 3.473923 ACCTGCTTGGGAAATTTTGTG 57.526 42.857 0.00 0.00 41.11 3.33
7209 10161 2.104622 ACCTGCTTGGGAAATTTTGTGG 59.895 45.455 0.00 0.00 41.11 4.17
7210 10162 2.368221 CCTGCTTGGGAAATTTTGTGGA 59.632 45.455 0.00 0.00 0.00 4.02
7211 10163 3.181456 CCTGCTTGGGAAATTTTGTGGAA 60.181 43.478 0.00 0.00 0.00 3.53
7212 10164 4.060205 CTGCTTGGGAAATTTTGTGGAAG 58.940 43.478 0.00 0.00 0.00 3.46
7213 10165 3.454082 TGCTTGGGAAATTTTGTGGAAGT 59.546 39.130 0.00 0.00 0.00 3.01
7214 10166 4.080638 TGCTTGGGAAATTTTGTGGAAGTT 60.081 37.500 0.00 0.00 0.00 2.66
7215 10167 4.273235 GCTTGGGAAATTTTGTGGAAGTTG 59.727 41.667 0.00 0.00 0.00 3.16
7216 10168 3.802866 TGGGAAATTTTGTGGAAGTTGC 58.197 40.909 0.00 0.00 0.00 4.17
7217 10169 2.799978 GGGAAATTTTGTGGAAGTTGCG 59.200 45.455 0.00 0.00 0.00 4.85
7218 10170 3.453424 GGAAATTTTGTGGAAGTTGCGT 58.547 40.909 0.00 0.00 0.00 5.24
7219 10171 3.245048 GGAAATTTTGTGGAAGTTGCGTG 59.755 43.478 0.00 0.00 0.00 5.34
7220 10172 3.518634 AATTTTGTGGAAGTTGCGTGT 57.481 38.095 0.00 0.00 0.00 4.49
7221 10173 2.270275 TTTTGTGGAAGTTGCGTGTG 57.730 45.000 0.00 0.00 0.00 3.82
7222 10174 1.169577 TTTGTGGAAGTTGCGTGTGT 58.830 45.000 0.00 0.00 0.00 3.72
7223 10175 0.730265 TTGTGGAAGTTGCGTGTGTC 59.270 50.000 0.00 0.00 0.00 3.67
7224 10176 1.275657 GTGGAAGTTGCGTGTGTCG 59.724 57.895 0.00 0.00 43.12 4.35
7225 10177 1.153529 TGGAAGTTGCGTGTGTCGT 60.154 52.632 0.00 0.00 42.13 4.34
7226 10178 1.275657 GGAAGTTGCGTGTGTCGTG 59.724 57.895 0.00 0.00 42.13 4.35
7227 10179 1.367665 GAAGTTGCGTGTGTCGTGC 60.368 57.895 0.00 0.00 42.13 5.34
7228 10180 2.031044 GAAGTTGCGTGTGTCGTGCA 62.031 55.000 0.00 0.00 42.13 4.57
7229 10181 1.640210 AAGTTGCGTGTGTCGTGCAA 61.640 50.000 0.00 0.00 45.54 4.08
7230 10182 3.178539 TTGCGTGTGTCGTGCAAA 58.821 50.000 0.00 0.00 44.84 3.68
7231 10183 1.502190 TTGCGTGTGTCGTGCAAAA 59.498 47.368 0.00 0.00 44.84 2.44
7232 10184 0.099613 TTGCGTGTGTCGTGCAAAAT 59.900 45.000 0.00 0.00 44.84 1.82
7233 10185 0.938008 TGCGTGTGTCGTGCAAAATA 59.062 45.000 0.00 0.00 42.13 1.40
7234 10186 1.330829 TGCGTGTGTCGTGCAAAATAA 59.669 42.857 0.00 0.00 42.13 1.40
7235 10187 2.223272 TGCGTGTGTCGTGCAAAATAAA 60.223 40.909 0.00 0.00 42.13 1.40
7236 10188 2.784380 GCGTGTGTCGTGCAAAATAAAA 59.216 40.909 0.00 0.00 42.13 1.52
7237 10189 3.240861 GCGTGTGTCGTGCAAAATAAAAA 59.759 39.130 0.00 0.00 42.13 1.94
7238 10190 4.085312 GCGTGTGTCGTGCAAAATAAAAAT 60.085 37.500 0.00 0.00 42.13 1.82
7239 10191 5.585837 CGTGTGTCGTGCAAAATAAAAATC 58.414 37.500 0.00 0.00 34.52 2.17
7240 10192 5.398122 CGTGTGTCGTGCAAAATAAAAATCT 59.602 36.000 0.00 0.00 34.52 2.40
7241 10193 6.075099 CGTGTGTCGTGCAAAATAAAAATCTT 60.075 34.615 0.00 0.00 34.52 2.40
7242 10194 7.273659 GTGTGTCGTGCAAAATAAAAATCTTC 58.726 34.615 0.00 0.00 0.00 2.87
7243 10195 6.141527 TGTGTCGTGCAAAATAAAAATCTTCG 59.858 34.615 0.00 0.00 0.00 3.79
7244 10196 5.627367 TGTCGTGCAAAATAAAAATCTTCGG 59.373 36.000 0.00 0.00 0.00 4.30
7245 10197 5.854338 GTCGTGCAAAATAAAAATCTTCGGA 59.146 36.000 0.00 0.00 0.00 4.55
7246 10198 6.526674 GTCGTGCAAAATAAAAATCTTCGGAT 59.473 34.615 0.00 0.00 36.00 4.18
7247 10199 6.526325 TCGTGCAAAATAAAAATCTTCGGATG 59.474 34.615 0.00 0.00 34.49 3.51
7248 10200 6.237542 CGTGCAAAATAAAAATCTTCGGATGG 60.238 38.462 0.00 0.00 34.49 3.51
7249 10201 6.811170 GTGCAAAATAAAAATCTTCGGATGGA 59.189 34.615 0.00 0.00 34.49 3.41
7250 10202 7.330700 GTGCAAAATAAAAATCTTCGGATGGAA 59.669 33.333 0.00 0.00 34.49 3.53
7251 10203 7.875041 TGCAAAATAAAAATCTTCGGATGGAAA 59.125 29.630 0.00 0.00 34.49 3.13
7252 10204 8.382875 GCAAAATAAAAATCTTCGGATGGAAAG 58.617 33.333 0.00 0.00 34.49 2.62
7253 10205 8.382875 CAAAATAAAAATCTTCGGATGGAAAGC 58.617 33.333 0.00 0.00 34.49 3.51
7254 10206 7.410120 AATAAAAATCTTCGGATGGAAAGCT 57.590 32.000 0.00 0.00 34.49 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 0.679002 TACTCGCTAGCCAACCGACT 60.679 55.000 9.66 0.00 0.00 4.18
15 16 0.171903 TTACTCGCTAGCCAACCGAC 59.828 55.000 9.66 0.00 0.00 4.79
24 25 7.531716 CCTTGACTCCTATATTTACTCGCTAG 58.468 42.308 0.00 0.00 0.00 3.42
25 26 6.072064 GCCTTGACTCCTATATTTACTCGCTA 60.072 42.308 0.00 0.00 0.00 4.26
83 84 4.079958 GGCACCTAGGAGATCCCTTAAAAA 60.080 45.833 17.98 0.00 44.85 1.94
146 147 7.238933 ACCCTAATCGATCCCCTAATAAAATGA 59.761 37.037 0.00 0.00 0.00 2.57
174 175 3.390135 CAAGCAAACAGACCGTAAGAGA 58.610 45.455 0.00 0.00 43.02 3.10
222 224 8.119891 ACATTTATAATACCCAGGGACAACTTT 58.880 33.333 14.54 0.00 0.00 2.66
223 225 7.648770 ACATTTATAATACCCAGGGACAACTT 58.351 34.615 14.54 0.28 0.00 2.66
234 236 8.661257 GCAACCAAACAAACATTTATAATACCC 58.339 33.333 0.00 0.00 0.00 3.69
271 273 5.968528 TTAGGCCAAGCGAATTTTCTTTA 57.031 34.783 5.01 0.00 0.00 1.85
280 282 4.038642 ACAAAGAAATTTAGGCCAAGCGAA 59.961 37.500 5.01 0.00 0.00 4.70
285 287 4.828387 ACGGTACAAAGAAATTTAGGCCAA 59.172 37.500 5.01 0.00 0.00 4.52
390 393 1.137086 ACACTCCATGTAGCCTTAGCG 59.863 52.381 0.00 0.00 40.88 4.26
435 438 2.075355 AACGGGTTCATGCCTCCCAA 62.075 55.000 16.05 0.00 41.12 4.12
473 476 4.211794 GGATCGGTTTCGTTTCTGTGTTTA 59.788 41.667 0.00 0.00 37.69 2.01
482 485 1.150827 GGAACGGATCGGTTTCGTTT 58.849 50.000 18.46 0.00 45.36 3.60
494 497 2.637872 AGTTTCATTCCAGAGGAACGGA 59.362 45.455 0.00 0.00 45.07 4.69
541 544 2.293399 GTGATGAAGGGTGTGTTTGGTC 59.707 50.000 0.00 0.00 0.00 4.02
563 566 0.036732 CAGACAGGCCAGGCTTTGTA 59.963 55.000 18.44 0.00 0.00 2.41
590 594 0.816825 CCCTCATGCTTGGATGACCG 60.817 60.000 0.68 0.00 39.42 4.79
593 597 1.211212 CTGACCCTCATGCTTGGATGA 59.789 52.381 4.83 4.83 0.00 2.92
625 630 4.208686 CCGCGGTCTAGGGTCAGC 62.209 72.222 19.50 0.00 0.00 4.26
653 658 2.605823 CGATCCTAGCGTGAATCTCACC 60.606 54.545 1.34 0.00 44.20 4.02
690 695 0.041488 CTATCGTACCTCCACGCGAC 60.041 60.000 15.93 0.00 41.67 5.19
694 699 0.235144 CGCTCTATCGTACCTCCACG 59.765 60.000 0.00 0.00 43.28 4.94
696 701 1.945394 GTTCGCTCTATCGTACCTCCA 59.055 52.381 0.00 0.00 0.00 3.86
1087 1099 1.434555 ACGAATCAAATCACGGCGAA 58.565 45.000 16.62 0.42 0.00 4.70
1099 1111 3.731089 ACCCTAACGAAACAACGAATCA 58.269 40.909 0.00 0.00 37.03 2.57
1171 1183 3.609853 TGCAGAACAAATTCCGCTAGAT 58.390 40.909 0.00 0.00 38.78 1.98
1192 1204 1.523758 AGCGCCGTTCTGAAAAATCT 58.476 45.000 2.29 0.00 0.00 2.40
1326 1338 6.071728 GGATATGGACTATTCATTTTGCCTGG 60.072 42.308 0.00 0.00 0.00 4.45
1395 1407 4.470602 TCCTCGAATCCTAGATTAGTGCA 58.529 43.478 0.00 0.00 0.00 4.57
1619 1678 6.600822 AGTGTTTCAATCACATCTAGGAATGG 59.399 38.462 1.48 0.00 38.16 3.16
1623 1682 6.533730 ACAAGTGTTTCAATCACATCTAGGA 58.466 36.000 1.48 0.00 38.16 2.94
1791 1850 5.596836 ACAGTGACCAATTCAACAACAAT 57.403 34.783 0.00 0.00 35.39 2.71
1879 1938 2.876079 GCCTAAACTGACCAGGGTTCTG 60.876 54.545 1.82 0.00 40.59 3.02
2388 2448 8.238707 CCAAAAAGGAAATGGAGTACCCACTAT 61.239 40.741 5.34 0.00 44.54 2.12
2597 2657 8.627208 AACTTTGATCAATATATACAGGCAGG 57.373 34.615 9.40 0.00 0.00 4.85
2650 2710 2.364002 AGTAAGCAAACGCCAACCAAAT 59.636 40.909 0.00 0.00 0.00 2.32
2661 2721 1.681264 ACCCAGCAACAGTAAGCAAAC 59.319 47.619 1.19 0.00 0.00 2.93
2855 3119 6.408858 TTCTGTGCAATAGAAGATTTCGAC 57.591 37.500 9.85 0.00 39.26 4.20
2897 3161 4.746466 AGATCGGAATCCTCTAGATGGTT 58.254 43.478 0.00 0.00 34.56 3.67
3098 3369 4.722361 TGCATGCATGTTGTGTCATATT 57.278 36.364 26.79 0.00 0.00 1.28
3193 3464 1.556911 ACAACAGCCTCTTCCGATGAT 59.443 47.619 0.00 0.00 0.00 2.45
3199 3470 2.746362 CAATGAGACAACAGCCTCTTCC 59.254 50.000 0.00 0.00 0.00 3.46
3626 3897 5.445964 ACCTGAATAACAATGTGGGGATAC 58.554 41.667 0.00 0.00 0.00 2.24
4327 4600 1.144503 AGGGGGCAATCATCTGATCAC 59.855 52.381 0.00 0.00 32.75 3.06
4351 4624 6.498304 CAAGTGCACAAGTAGAAAACAGAAT 58.502 36.000 21.04 0.00 0.00 2.40
4521 4820 2.804527 CACGGCATATCCATCTTGACAG 59.195 50.000 0.00 0.00 34.01 3.51
5010 5313 3.020026 CTGAAGAGCAGCCGCAACG 62.020 63.158 0.00 0.00 42.27 4.10
5187 5490 8.822805 TCCTGAAGTTGGAATAAGTTACAGTAT 58.177 33.333 0.00 0.00 27.72 2.12
5319 5622 9.909644 GTTTTCTTACAGATACTGTCAAGAGTA 57.090 33.333 7.68 0.00 41.21 2.59
5650 5956 1.033746 ATGCAGTTTGGGATGGAGCG 61.034 55.000 0.00 0.00 0.00 5.03
5795 6191 7.378461 GCAACGTCAGAAATGAACTAAAATTCA 59.622 33.333 0.00 0.00 42.62 2.57
5815 6211 3.402628 AGAAACCATAGACTGCAACGT 57.597 42.857 0.00 0.00 0.00 3.99
5959 6355 0.172578 TATCCGTGGTGCTGAGTTCG 59.827 55.000 0.00 0.00 0.00 3.95
6075 6500 9.280174 TGATTAACACGAGAGTTATTTTTCCTT 57.720 29.630 0.00 0.00 46.40 3.36
6084 6509 8.786826 ATTGGAAATGATTAACACGAGAGTTA 57.213 30.769 0.00 0.00 46.40 2.24
6087 6512 7.530010 ACAATTGGAAATGATTAACACGAGAG 58.470 34.615 10.83 0.00 0.00 3.20
6088 6513 7.174080 TGACAATTGGAAATGATTAACACGAGA 59.826 33.333 10.83 0.00 0.00 4.04
6233 6660 0.319040 AATCGGACGATCCATCTGCG 60.319 55.000 7.75 0.00 35.91 5.18
6328 6756 2.224066 ACACCTCAACAGTCACTACAGC 60.224 50.000 0.00 0.00 0.00 4.40
6357 6785 6.039781 TGTTCTTTGTTAACTCAGTAACGC 57.960 37.500 7.22 0.00 36.87 4.84
6362 6791 7.562135 TCCTAACTGTTCTTTGTTAACTCAGT 58.438 34.615 7.22 8.65 36.45 3.41
6525 7075 7.809806 GTCATTTAATGGTTCAAGGACTTCAAG 59.190 37.037 5.02 0.00 0.00 3.02
6560 7110 1.399440 CATCAACGGCTCATTCTGTGG 59.601 52.381 0.00 0.00 0.00 4.17
6579 7129 2.964209 ACTTATAGCTCTAGGGCAGCA 58.036 47.619 18.89 1.14 39.56 4.41
6583 7133 3.007074 GGGTGAACTTATAGCTCTAGGGC 59.993 52.174 6.45 6.45 0.00 5.19
6588 7138 3.310193 GGGAGGGTGAACTTATAGCTCT 58.690 50.000 0.00 0.00 0.00 4.09
6589 7139 3.039011 TGGGAGGGTGAACTTATAGCTC 58.961 50.000 0.00 0.00 0.00 4.09
6590 7140 3.130734 TGGGAGGGTGAACTTATAGCT 57.869 47.619 0.00 0.00 0.00 3.32
6592 7142 4.021368 CGGTATGGGAGGGTGAACTTATAG 60.021 50.000 0.00 0.00 0.00 1.31
6593 7143 3.899360 CGGTATGGGAGGGTGAACTTATA 59.101 47.826 0.00 0.00 0.00 0.98
6594 7144 2.704065 CGGTATGGGAGGGTGAACTTAT 59.296 50.000 0.00 0.00 0.00 1.73
6595 7145 2.112998 CGGTATGGGAGGGTGAACTTA 58.887 52.381 0.00 0.00 0.00 2.24
6596 7146 0.909623 CGGTATGGGAGGGTGAACTT 59.090 55.000 0.00 0.00 0.00 2.66
6602 9369 0.759436 CTGCTACGGTATGGGAGGGT 60.759 60.000 0.00 0.00 0.00 4.34
6613 9380 1.021390 CAAAGACAGGCCTGCTACGG 61.021 60.000 33.06 15.81 0.00 4.02
6620 9387 1.530013 GCATGCACAAAGACAGGCCT 61.530 55.000 14.21 0.00 37.61 5.19
6621 9388 1.080298 GCATGCACAAAGACAGGCC 60.080 57.895 14.21 0.00 37.61 5.19
6622 9389 1.443194 CGCATGCACAAAGACAGGC 60.443 57.895 19.57 0.00 40.04 4.85
6623 9390 0.110056 GACGCATGCACAAAGACAGG 60.110 55.000 19.57 0.00 0.00 4.00
6624 9391 0.110056 GGACGCATGCACAAAGACAG 60.110 55.000 19.57 0.00 0.00 3.51
6625 9392 0.534877 AGGACGCATGCACAAAGACA 60.535 50.000 19.57 0.00 0.00 3.41
6626 9393 0.166814 GAGGACGCATGCACAAAGAC 59.833 55.000 19.57 0.84 0.00 3.01
6627 9394 0.035317 AGAGGACGCATGCACAAAGA 59.965 50.000 19.57 0.00 0.00 2.52
6628 9395 0.167470 CAGAGGACGCATGCACAAAG 59.833 55.000 19.57 2.94 0.00 2.77
6629 9396 0.250252 TCAGAGGACGCATGCACAAA 60.250 50.000 19.57 0.00 0.00 2.83
6630 9397 0.036105 ATCAGAGGACGCATGCACAA 60.036 50.000 19.57 0.00 0.00 3.33
6631 9398 0.741927 CATCAGAGGACGCATGCACA 60.742 55.000 19.57 0.00 0.00 4.57
6632 9399 0.460811 TCATCAGAGGACGCATGCAC 60.461 55.000 19.57 10.85 0.00 4.57
6633 9400 0.460811 GTCATCAGAGGACGCATGCA 60.461 55.000 19.57 0.00 0.00 3.96
6634 9401 1.156645 GGTCATCAGAGGACGCATGC 61.157 60.000 7.91 7.91 36.12 4.06
6635 9402 0.176449 TGGTCATCAGAGGACGCATG 59.824 55.000 9.07 0.00 36.12 4.06
6636 9403 0.904649 TTGGTCATCAGAGGACGCAT 59.095 50.000 9.07 0.00 36.12 4.73
6637 9404 0.037326 GTTGGTCATCAGAGGACGCA 60.037 55.000 9.07 5.83 36.12 5.24
6638 9405 1.078759 CGTTGGTCATCAGAGGACGC 61.079 60.000 9.07 3.37 36.12 5.19
6639 9406 1.078759 GCGTTGGTCATCAGAGGACG 61.079 60.000 9.07 0.00 36.12 4.79
6640 9407 0.247736 AGCGTTGGTCATCAGAGGAC 59.752 55.000 6.67 6.67 34.52 3.85
6641 9408 1.476891 GTAGCGTTGGTCATCAGAGGA 59.523 52.381 0.00 0.00 0.00 3.71
6642 9409 1.471676 GGTAGCGTTGGTCATCAGAGG 60.472 57.143 0.00 0.00 0.00 3.69
6643 9410 1.478510 AGGTAGCGTTGGTCATCAGAG 59.521 52.381 0.00 0.00 0.00 3.35
6644 9411 1.557099 AGGTAGCGTTGGTCATCAGA 58.443 50.000 0.00 0.00 0.00 3.27
6645 9412 2.688446 TCTAGGTAGCGTTGGTCATCAG 59.312 50.000 0.00 0.00 0.00 2.90
6646 9413 2.688446 CTCTAGGTAGCGTTGGTCATCA 59.312 50.000 0.00 0.00 0.00 3.07
6647 9414 2.544069 GCTCTAGGTAGCGTTGGTCATC 60.544 54.545 0.00 0.00 31.76 2.92
6648 9415 1.409427 GCTCTAGGTAGCGTTGGTCAT 59.591 52.381 0.00 0.00 31.76 3.06
6649 9416 0.815734 GCTCTAGGTAGCGTTGGTCA 59.184 55.000 0.00 0.00 31.76 4.02
6650 9417 3.644774 GCTCTAGGTAGCGTTGGTC 57.355 57.895 0.00 0.00 31.76 4.02
6658 9425 1.240256 CCGGCTACAGCTCTAGGTAG 58.760 60.000 0.54 4.90 41.70 3.18
6659 9426 0.822532 GCCGGCTACAGCTCTAGGTA 60.823 60.000 22.15 0.00 41.70 3.08
6660 9427 2.128507 GCCGGCTACAGCTCTAGGT 61.129 63.158 22.15 0.00 41.70 3.08
6661 9428 2.731374 GCCGGCTACAGCTCTAGG 59.269 66.667 22.15 1.88 41.70 3.02
6662 9429 2.731374 GGCCGGCTACAGCTCTAG 59.269 66.667 28.56 0.00 41.70 2.43
6663 9430 2.838225 GGGCCGGCTACAGCTCTA 60.838 66.667 28.56 0.00 41.70 2.43
6665 9432 4.096003 TTGGGCCGGCTACAGCTC 62.096 66.667 28.56 7.30 41.70 4.09
6666 9433 4.101448 CTTGGGCCGGCTACAGCT 62.101 66.667 28.56 0.00 41.70 4.24
6667 9434 4.410400 ACTTGGGCCGGCTACAGC 62.410 66.667 28.56 9.02 41.14 4.40
6668 9435 2.125106 GACTTGGGCCGGCTACAG 60.125 66.667 28.56 20.63 0.00 2.74
6669 9436 1.774894 AAAGACTTGGGCCGGCTACA 61.775 55.000 28.56 22.69 0.00 2.74
6670 9437 1.002502 AAAGACTTGGGCCGGCTAC 60.003 57.895 28.56 20.18 0.00 3.58
6671 9438 1.002624 CAAAGACTTGGGCCGGCTA 60.003 57.895 28.56 13.55 0.00 3.93
6672 9439 2.282462 CAAAGACTTGGGCCGGCT 60.282 61.111 28.56 5.35 0.00 5.52
6673 9440 2.597510 ACAAAGACTTGGGCCGGC 60.598 61.111 21.18 21.18 36.82 6.13
6768 9599 5.248477 TGGAGTTGGCCTTATATATGACCTC 59.752 44.000 3.32 0.00 0.00 3.85
6778 9609 0.037590 TGCGTTGGAGTTGGCCTTAT 59.962 50.000 3.32 0.00 0.00 1.73
6785 9616 2.604174 GGGTCGTGCGTTGGAGTTG 61.604 63.158 0.00 0.00 0.00 3.16
6798 9640 0.887933 CATTTGGAGGTTTGGGGTCG 59.112 55.000 0.00 0.00 0.00 4.79
6810 9652 0.824182 AAAACGGCCGTCCATTTGGA 60.824 50.000 34.29 0.00 43.08 3.53
6811 9653 0.032815 AAAAACGGCCGTCCATTTGG 59.967 50.000 34.29 0.00 26.81 3.28
6830 9672 5.569355 TGACCTCTCTTATGCCATCAAAAA 58.431 37.500 0.00 0.00 0.00 1.94
6876 9732 2.618709 CCTTCAAAAGAAACAGCCGTCT 59.381 45.455 0.00 0.00 0.00 4.18
6895 9780 3.054802 CCTTAGACATGACCTCTTTGCCT 60.055 47.826 0.00 0.00 0.00 4.75
6900 9785 2.551270 TGGCCTTAGACATGACCTCTT 58.449 47.619 3.32 0.00 0.00 2.85
6942 9894 1.202203 TCAGACAAAACGAACGTCCG 58.798 50.000 0.00 0.00 0.00 4.79
6953 9905 6.541641 CCCAAAATGGACAAAATTCAGACAAA 59.458 34.615 0.00 0.00 40.96 2.83
6996 9948 9.123902 CCATCAGGTTGATAAGTTCATCAATTA 57.876 33.333 2.19 0.00 44.47 1.40
6997 9949 7.417116 GCCATCAGGTTGATAAGTTCATCAATT 60.417 37.037 2.19 0.00 44.47 2.32
6998 9950 6.040166 GCCATCAGGTTGATAAGTTCATCAAT 59.960 38.462 2.19 0.00 44.47 2.57
6999 9951 5.357878 GCCATCAGGTTGATAAGTTCATCAA 59.642 40.000 0.00 0.00 34.28 2.57
7000 9952 4.883585 GCCATCAGGTTGATAAGTTCATCA 59.116 41.667 0.00 0.00 34.28 3.07
7001 9953 4.883585 TGCCATCAGGTTGATAAGTTCATC 59.116 41.667 0.00 0.00 34.28 2.92
7002 9954 4.641989 GTGCCATCAGGTTGATAAGTTCAT 59.358 41.667 0.00 0.00 34.28 2.57
7003 9955 4.009675 GTGCCATCAGGTTGATAAGTTCA 58.990 43.478 0.00 0.00 34.28 3.18
7004 9956 4.009675 TGTGCCATCAGGTTGATAAGTTC 58.990 43.478 0.00 0.00 34.28 3.01
7005 9957 3.758554 GTGTGCCATCAGGTTGATAAGTT 59.241 43.478 0.00 0.00 34.28 2.66
7006 9958 3.347216 GTGTGCCATCAGGTTGATAAGT 58.653 45.455 0.00 0.00 34.28 2.24
7007 9959 2.684881 GGTGTGCCATCAGGTTGATAAG 59.315 50.000 0.00 0.00 34.28 1.73
7008 9960 2.040947 TGGTGTGCCATCAGGTTGATAA 59.959 45.455 0.00 0.00 40.46 1.75
7009 9961 1.632920 TGGTGTGCCATCAGGTTGATA 59.367 47.619 0.00 0.00 40.46 2.15
7010 9962 0.405198 TGGTGTGCCATCAGGTTGAT 59.595 50.000 0.00 0.00 40.46 2.57
7011 9963 0.184692 TTGGTGTGCCATCAGGTTGA 59.815 50.000 0.00 0.00 45.56 3.18
7012 9964 0.314935 GTTGGTGTGCCATCAGGTTG 59.685 55.000 0.00 0.00 45.56 3.77
7013 9965 1.172180 CGTTGGTGTGCCATCAGGTT 61.172 55.000 0.00 0.00 45.56 3.50
7014 9966 1.600636 CGTTGGTGTGCCATCAGGT 60.601 57.895 0.00 0.00 45.56 4.00
7015 9967 2.334946 CCGTTGGTGTGCCATCAGG 61.335 63.158 0.00 0.00 45.56 3.86
7016 9968 2.334946 CCCGTTGGTGTGCCATCAG 61.335 63.158 0.00 0.00 45.56 2.90
7017 9969 2.135903 ATCCCGTTGGTGTGCCATCA 62.136 55.000 0.00 0.00 45.56 3.07
7018 9970 1.378514 ATCCCGTTGGTGTGCCATC 60.379 57.895 0.00 0.00 45.56 3.51
7019 9971 1.678635 CATCCCGTTGGTGTGCCAT 60.679 57.895 0.00 0.00 45.56 4.40
7020 9972 2.282110 CATCCCGTTGGTGTGCCA 60.282 61.111 0.00 0.00 44.38 4.92
7021 9973 1.586154 CTTCATCCCGTTGGTGTGCC 61.586 60.000 0.00 0.00 0.00 5.01
7022 9974 1.875963 CTTCATCCCGTTGGTGTGC 59.124 57.895 0.00 0.00 0.00 4.57
7023 9975 0.606401 AGCTTCATCCCGTTGGTGTG 60.606 55.000 0.00 0.00 0.00 3.82
7024 9976 0.981183 TAGCTTCATCCCGTTGGTGT 59.019 50.000 0.00 0.00 0.00 4.16
7025 9977 2.332063 ATAGCTTCATCCCGTTGGTG 57.668 50.000 0.00 0.00 0.00 4.17
7026 9978 4.505039 GGATAATAGCTTCATCCCGTTGGT 60.505 45.833 0.00 0.00 33.47 3.67
7027 9979 4.003648 GGATAATAGCTTCATCCCGTTGG 58.996 47.826 0.00 0.00 33.47 3.77
7028 9980 3.679980 CGGATAATAGCTTCATCCCGTTG 59.320 47.826 12.74 0.00 35.75 4.10
7029 9981 3.306780 CCGGATAATAGCTTCATCCCGTT 60.307 47.826 0.00 0.00 35.75 4.44
7030 9982 2.233922 CCGGATAATAGCTTCATCCCGT 59.766 50.000 0.00 0.00 35.75 5.28
7031 9983 2.418746 CCCGGATAATAGCTTCATCCCG 60.419 54.545 0.73 10.87 35.75 5.14
7032 9984 2.838202 TCCCGGATAATAGCTTCATCCC 59.162 50.000 0.73 1.09 35.75 3.85
7033 9985 3.260884 TGTCCCGGATAATAGCTTCATCC 59.739 47.826 0.73 0.77 35.80 3.51
7034 9986 4.537135 TGTCCCGGATAATAGCTTCATC 57.463 45.455 0.73 0.00 0.00 2.92
7035 9987 4.974645 TTGTCCCGGATAATAGCTTCAT 57.025 40.909 0.73 0.00 0.00 2.57
7036 9988 4.974645 ATTGTCCCGGATAATAGCTTCA 57.025 40.909 0.73 0.00 0.00 3.02
7037 9989 4.695928 GGAATTGTCCCGGATAATAGCTTC 59.304 45.833 0.73 4.97 38.08 3.86
7038 9990 4.104102 TGGAATTGTCCCGGATAATAGCTT 59.896 41.667 0.73 0.00 44.23 3.74
7039 9991 3.650942 TGGAATTGTCCCGGATAATAGCT 59.349 43.478 0.73 0.00 44.23 3.32
7040 9992 4.015872 TGGAATTGTCCCGGATAATAGC 57.984 45.455 0.73 5.70 44.23 2.97
7055 10007 3.067180 CCAACTATGCGCTCAATGGAATT 59.933 43.478 9.73 0.00 36.63 2.17
7056 10008 2.620115 CCAACTATGCGCTCAATGGAAT 59.380 45.455 9.73 0.00 0.00 3.01
7057 10009 2.016318 CCAACTATGCGCTCAATGGAA 58.984 47.619 9.73 0.00 0.00 3.53
7058 10010 1.065491 ACCAACTATGCGCTCAATGGA 60.065 47.619 20.89 0.00 0.00 3.41
7059 10011 1.382522 ACCAACTATGCGCTCAATGG 58.617 50.000 9.73 13.17 0.00 3.16
7060 10012 2.419673 TCAACCAACTATGCGCTCAATG 59.580 45.455 9.73 1.16 0.00 2.82
7061 10013 2.679837 CTCAACCAACTATGCGCTCAAT 59.320 45.455 9.73 0.00 0.00 2.57
7062 10014 2.076100 CTCAACCAACTATGCGCTCAA 58.924 47.619 9.73 0.00 0.00 3.02
7063 10015 1.675714 CCTCAACCAACTATGCGCTCA 60.676 52.381 9.73 0.00 0.00 4.26
7064 10016 1.009829 CCTCAACCAACTATGCGCTC 58.990 55.000 9.73 0.00 0.00 5.03
7065 10017 0.613260 TCCTCAACCAACTATGCGCT 59.387 50.000 9.73 0.00 0.00 5.92
7066 10018 1.668419 ATCCTCAACCAACTATGCGC 58.332 50.000 0.00 0.00 0.00 6.09
7067 10019 4.082787 ACAAAATCCTCAACCAACTATGCG 60.083 41.667 0.00 0.00 0.00 4.73
7068 10020 5.391312 ACAAAATCCTCAACCAACTATGC 57.609 39.130 0.00 0.00 0.00 3.14
7069 10021 6.375455 AGCTACAAAATCCTCAACCAACTATG 59.625 38.462 0.00 0.00 0.00 2.23
7070 10022 6.485171 AGCTACAAAATCCTCAACCAACTAT 58.515 36.000 0.00 0.00 0.00 2.12
7071 10023 5.876357 AGCTACAAAATCCTCAACCAACTA 58.124 37.500 0.00 0.00 0.00 2.24
7072 10024 4.729868 AGCTACAAAATCCTCAACCAACT 58.270 39.130 0.00 0.00 0.00 3.16
7073 10025 5.222631 CAAGCTACAAAATCCTCAACCAAC 58.777 41.667 0.00 0.00 0.00 3.77
7074 10026 4.280677 CCAAGCTACAAAATCCTCAACCAA 59.719 41.667 0.00 0.00 0.00 3.67
7075 10027 3.826157 CCAAGCTACAAAATCCTCAACCA 59.174 43.478 0.00 0.00 0.00 3.67
7076 10028 3.826729 ACCAAGCTACAAAATCCTCAACC 59.173 43.478 0.00 0.00 0.00 3.77
7077 10029 6.759497 ATACCAAGCTACAAAATCCTCAAC 57.241 37.500 0.00 0.00 0.00 3.18
7078 10030 8.871629 TTTATACCAAGCTACAAAATCCTCAA 57.128 30.769 0.00 0.00 0.00 3.02
7079 10031 8.736244 GTTTTATACCAAGCTACAAAATCCTCA 58.264 33.333 0.00 0.00 0.00 3.86
7080 10032 7.908601 CGTTTTATACCAAGCTACAAAATCCTC 59.091 37.037 0.00 0.00 0.00 3.71
7081 10033 7.608761 TCGTTTTATACCAAGCTACAAAATCCT 59.391 33.333 0.00 0.00 0.00 3.24
7082 10034 7.754625 TCGTTTTATACCAAGCTACAAAATCC 58.245 34.615 0.00 0.00 0.00 3.01
7083 10035 9.274065 CTTCGTTTTATACCAAGCTACAAAATC 57.726 33.333 0.00 0.00 0.00 2.17
7084 10036 8.789762 ACTTCGTTTTATACCAAGCTACAAAAT 58.210 29.630 0.00 0.00 29.06 1.82
7085 10037 8.156994 ACTTCGTTTTATACCAAGCTACAAAA 57.843 30.769 0.00 0.00 29.06 2.44
7086 10038 7.441760 TGACTTCGTTTTATACCAAGCTACAAA 59.558 33.333 0.00 0.00 29.06 2.83
7087 10039 6.930164 TGACTTCGTTTTATACCAAGCTACAA 59.070 34.615 0.00 0.00 29.06 2.41
7088 10040 6.366877 GTGACTTCGTTTTATACCAAGCTACA 59.633 38.462 0.00 0.00 29.06 2.74
7089 10041 6.366877 TGTGACTTCGTTTTATACCAAGCTAC 59.633 38.462 0.00 0.00 29.06 3.58
7090 10042 6.457355 TGTGACTTCGTTTTATACCAAGCTA 58.543 36.000 0.00 0.00 29.06 3.32
7091 10043 5.302360 TGTGACTTCGTTTTATACCAAGCT 58.698 37.500 0.00 0.00 29.06 3.74
7092 10044 5.600908 TGTGACTTCGTTTTATACCAAGC 57.399 39.130 0.00 0.00 29.06 4.01
7093 10045 7.581476 ACAATGTGACTTCGTTTTATACCAAG 58.419 34.615 0.00 0.00 31.99 3.61
7094 10046 7.499321 ACAATGTGACTTCGTTTTATACCAA 57.501 32.000 0.00 0.00 0.00 3.67
7095 10047 7.499321 AACAATGTGACTTCGTTTTATACCA 57.501 32.000 0.00 0.00 0.00 3.25
7096 10048 8.071368 TGAAACAATGTGACTTCGTTTTATACC 58.929 33.333 0.00 0.00 30.32 2.73
7097 10049 8.996988 TGAAACAATGTGACTTCGTTTTATAC 57.003 30.769 0.00 0.00 30.32 1.47
7098 10050 9.605955 CATGAAACAATGTGACTTCGTTTTATA 57.394 29.630 0.00 0.00 30.32 0.98
7099 10051 8.134895 ACATGAAACAATGTGACTTCGTTTTAT 58.865 29.630 0.00 0.00 39.32 1.40
7100 10052 7.476667 ACATGAAACAATGTGACTTCGTTTTA 58.523 30.769 0.00 0.00 39.32 1.52
7101 10053 6.329496 ACATGAAACAATGTGACTTCGTTTT 58.671 32.000 0.00 0.00 39.32 2.43
7102 10054 5.890334 ACATGAAACAATGTGACTTCGTTT 58.110 33.333 0.00 0.00 39.32 3.60
7103 10055 5.499139 ACATGAAACAATGTGACTTCGTT 57.501 34.783 0.00 0.00 39.32 3.85
7104 10056 5.065859 TCAACATGAAACAATGTGACTTCGT 59.934 36.000 0.00 0.00 39.89 3.85
7105 10057 5.509771 TCAACATGAAACAATGTGACTTCG 58.490 37.500 0.00 0.00 39.89 3.79
7106 10058 7.095940 CCATTCAACATGAAACAATGTGACTTC 60.096 37.037 0.00 0.00 40.12 3.01
7107 10059 6.702723 CCATTCAACATGAAACAATGTGACTT 59.297 34.615 0.00 0.00 40.12 3.01
7108 10060 6.218019 CCATTCAACATGAAACAATGTGACT 58.782 36.000 0.00 0.00 40.12 3.41
7109 10061 5.406175 CCCATTCAACATGAAACAATGTGAC 59.594 40.000 0.00 0.00 40.12 3.67
7110 10062 5.303845 TCCCATTCAACATGAAACAATGTGA 59.696 36.000 0.00 0.00 40.12 3.58
7111 10063 5.539979 TCCCATTCAACATGAAACAATGTG 58.460 37.500 0.00 0.00 40.12 3.21
7112 10064 5.786311 CTCCCATTCAACATGAAACAATGT 58.214 37.500 0.00 0.00 40.12 2.71
7113 10065 4.628333 GCTCCCATTCAACATGAAACAATG 59.372 41.667 0.00 2.35 40.12 2.82
7114 10066 4.283978 TGCTCCCATTCAACATGAAACAAT 59.716 37.500 0.00 0.00 40.12 2.71
7115 10067 3.640498 TGCTCCCATTCAACATGAAACAA 59.360 39.130 0.00 0.00 40.12 2.83
7116 10068 3.229293 TGCTCCCATTCAACATGAAACA 58.771 40.909 0.00 0.00 40.12 2.83
7117 10069 3.940209 TGCTCCCATTCAACATGAAAC 57.060 42.857 0.00 0.00 40.12 2.78
7118 10070 4.087907 TGATGCTCCCATTCAACATGAAA 58.912 39.130 0.00 0.00 40.12 2.69
7119 10071 3.697542 CTGATGCTCCCATTCAACATGAA 59.302 43.478 0.00 0.00 41.09 2.57
7120 10072 3.284617 CTGATGCTCCCATTCAACATGA 58.715 45.455 0.00 0.00 0.00 3.07
7121 10073 3.021695 ACTGATGCTCCCATTCAACATG 58.978 45.455 0.00 0.00 0.00 3.21
7122 10074 3.377253 ACTGATGCTCCCATTCAACAT 57.623 42.857 0.00 0.00 0.00 2.71
7123 10075 2.885135 ACTGATGCTCCCATTCAACA 57.115 45.000 0.00 0.00 0.00 3.33
7124 10076 3.841643 CAAACTGATGCTCCCATTCAAC 58.158 45.455 0.00 0.00 0.00 3.18
7125 10077 2.231964 GCAAACTGATGCTCCCATTCAA 59.768 45.455 3.58 0.00 43.06 2.69
7126 10078 1.820519 GCAAACTGATGCTCCCATTCA 59.179 47.619 3.58 0.00 43.06 2.57
7127 10079 2.573941 GCAAACTGATGCTCCCATTC 57.426 50.000 3.58 0.00 43.06 2.67
7135 10087 9.875675 CTTCTAAATCTATTAGCAAACTGATGC 57.124 33.333 2.74 2.74 46.78 3.91
7148 10100 9.906660 GTCGACATCATCTCTTCTAAATCTATT 57.093 33.333 11.55 0.00 0.00 1.73
7149 10101 8.519526 GGTCGACATCATCTCTTCTAAATCTAT 58.480 37.037 18.91 0.00 0.00 1.98
7150 10102 7.040340 GGGTCGACATCATCTCTTCTAAATCTA 60.040 40.741 18.91 0.00 0.00 1.98
7151 10103 6.239176 GGGTCGACATCATCTCTTCTAAATCT 60.239 42.308 18.91 0.00 0.00 2.40
7152 10104 5.923684 GGGTCGACATCATCTCTTCTAAATC 59.076 44.000 18.91 0.00 0.00 2.17
7153 10105 5.221541 GGGGTCGACATCATCTCTTCTAAAT 60.222 44.000 18.91 0.00 0.00 1.40
7154 10106 4.099573 GGGGTCGACATCATCTCTTCTAAA 59.900 45.833 18.91 0.00 0.00 1.85
7155 10107 3.637229 GGGGTCGACATCATCTCTTCTAA 59.363 47.826 18.91 0.00 0.00 2.10
7156 10108 3.117474 AGGGGTCGACATCATCTCTTCTA 60.117 47.826 18.91 0.00 0.00 2.10
7157 10109 2.035632 GGGGTCGACATCATCTCTTCT 58.964 52.381 18.91 0.00 0.00 2.85
7158 10110 2.035632 AGGGGTCGACATCATCTCTTC 58.964 52.381 18.91 0.00 0.00 2.87
7159 10111 2.166907 AGGGGTCGACATCATCTCTT 57.833 50.000 18.91 0.00 0.00 2.85
7160 10112 1.759445 CAAGGGGTCGACATCATCTCT 59.241 52.381 18.91 1.08 0.00 3.10
7161 10113 1.757118 TCAAGGGGTCGACATCATCTC 59.243 52.381 18.91 0.00 0.00 2.75
7162 10114 1.759445 CTCAAGGGGTCGACATCATCT 59.241 52.381 18.91 3.85 0.00 2.90
7163 10115 1.808133 GCTCAAGGGGTCGACATCATC 60.808 57.143 18.91 0.00 0.00 2.92
7164 10116 0.179000 GCTCAAGGGGTCGACATCAT 59.821 55.000 18.91 3.54 0.00 2.45
7165 10117 1.191489 TGCTCAAGGGGTCGACATCA 61.191 55.000 18.91 0.00 0.00 3.07
7166 10118 0.460987 CTGCTCAAGGGGTCGACATC 60.461 60.000 18.91 8.73 0.00 3.06
7167 10119 1.194781 ACTGCTCAAGGGGTCGACAT 61.195 55.000 18.91 0.00 0.00 3.06
7168 10120 0.541063 TACTGCTCAAGGGGTCGACA 60.541 55.000 18.91 0.00 0.00 4.35
7169 10121 0.606604 TTACTGCTCAAGGGGTCGAC 59.393 55.000 7.13 7.13 0.00 4.20
7170 10122 0.606604 GTTACTGCTCAAGGGGTCGA 59.393 55.000 0.00 0.00 0.00 4.20
7171 10123 0.391263 GGTTACTGCTCAAGGGGTCG 60.391 60.000 0.00 0.00 0.00 4.79
7172 10124 0.984995 AGGTTACTGCTCAAGGGGTC 59.015 55.000 0.00 0.00 0.00 4.46
7173 10125 0.693049 CAGGTTACTGCTCAAGGGGT 59.307 55.000 0.00 0.00 38.01 4.95
7174 10126 3.558674 CAGGTTACTGCTCAAGGGG 57.441 57.895 0.00 0.00 38.01 4.79
7184 10136 4.653801 ACAAAATTTCCCAAGCAGGTTACT 59.346 37.500 0.00 0.00 34.66 2.24
7185 10137 4.749598 CACAAAATTTCCCAAGCAGGTTAC 59.250 41.667 0.00 0.00 34.66 2.50
7186 10138 4.202305 CCACAAAATTTCCCAAGCAGGTTA 60.202 41.667 0.00 0.00 34.66 2.85
7187 10139 3.433456 CCACAAAATTTCCCAAGCAGGTT 60.433 43.478 0.00 0.00 34.66 3.50
7188 10140 2.104622 CCACAAAATTTCCCAAGCAGGT 59.895 45.455 0.00 0.00 34.66 4.00
7189 10141 2.368221 TCCACAAAATTTCCCAAGCAGG 59.632 45.455 0.00 0.00 37.03 4.85
7190 10142 3.749665 TCCACAAAATTTCCCAAGCAG 57.250 42.857 0.00 0.00 0.00 4.24
7191 10143 3.454082 ACTTCCACAAAATTTCCCAAGCA 59.546 39.130 0.00 0.00 0.00 3.91
7192 10144 4.071961 ACTTCCACAAAATTTCCCAAGC 57.928 40.909 0.00 0.00 0.00 4.01
7193 10145 4.273235 GCAACTTCCACAAAATTTCCCAAG 59.727 41.667 0.00 0.00 0.00 3.61
7194 10146 4.195416 GCAACTTCCACAAAATTTCCCAA 58.805 39.130 0.00 0.00 0.00 4.12
7195 10147 3.739519 CGCAACTTCCACAAAATTTCCCA 60.740 43.478 0.00 0.00 0.00 4.37
7196 10148 2.799978 CGCAACTTCCACAAAATTTCCC 59.200 45.455 0.00 0.00 0.00 3.97
7197 10149 3.245048 CACGCAACTTCCACAAAATTTCC 59.755 43.478 0.00 0.00 0.00 3.13
7198 10150 3.862845 ACACGCAACTTCCACAAAATTTC 59.137 39.130 0.00 0.00 0.00 2.17
7199 10151 3.616379 CACACGCAACTTCCACAAAATTT 59.384 39.130 0.00 0.00 0.00 1.82
7200 10152 3.186119 CACACGCAACTTCCACAAAATT 58.814 40.909 0.00 0.00 0.00 1.82
7201 10153 2.165437 ACACACGCAACTTCCACAAAAT 59.835 40.909 0.00 0.00 0.00 1.82
7202 10154 1.542030 ACACACGCAACTTCCACAAAA 59.458 42.857 0.00 0.00 0.00 2.44
7203 10155 1.131504 GACACACGCAACTTCCACAAA 59.868 47.619 0.00 0.00 0.00 2.83
7204 10156 0.730265 GACACACGCAACTTCCACAA 59.270 50.000 0.00 0.00 0.00 3.33
7205 10157 1.425267 CGACACACGCAACTTCCACA 61.425 55.000 0.00 0.00 34.51 4.17
7206 10158 1.275657 CGACACACGCAACTTCCAC 59.724 57.895 0.00 0.00 34.51 4.02
7207 10159 1.153529 ACGACACACGCAACTTCCA 60.154 52.632 0.00 0.00 46.94 3.53
7208 10160 1.275657 CACGACACACGCAACTTCC 59.724 57.895 0.00 0.00 46.94 3.46
7209 10161 1.367665 GCACGACACACGCAACTTC 60.368 57.895 0.00 0.00 46.94 3.01
7210 10162 1.640210 TTGCACGACACACGCAACTT 61.640 50.000 0.00 0.00 46.94 2.66
7211 10163 1.640210 TTTGCACGACACACGCAACT 61.640 50.000 0.00 0.00 44.78 3.16
7212 10164 0.794981 TTTTGCACGACACACGCAAC 60.795 50.000 0.00 0.00 44.78 4.17
7213 10165 0.099613 ATTTTGCACGACACACGCAA 59.900 45.000 0.00 0.00 46.94 4.85
7214 10166 0.938008 TATTTTGCACGACACACGCA 59.062 45.000 0.00 0.00 46.94 5.24
7215 10167 2.025544 TTATTTTGCACGACACACGC 57.974 45.000 0.00 0.00 46.94 5.34
7217 10169 6.747659 AGATTTTTATTTTGCACGACACAC 57.252 33.333 0.00 0.00 0.00 3.82
7218 10170 6.141527 CGAAGATTTTTATTTTGCACGACACA 59.858 34.615 0.00 0.00 0.00 3.72
7219 10171 6.398517 CCGAAGATTTTTATTTTGCACGACAC 60.399 38.462 0.00 0.00 0.00 3.67
7220 10172 5.627367 CCGAAGATTTTTATTTTGCACGACA 59.373 36.000 0.00 0.00 0.00 4.35
7221 10173 5.854338 TCCGAAGATTTTTATTTTGCACGAC 59.146 36.000 0.00 0.00 0.00 4.34
7222 10174 6.003234 TCCGAAGATTTTTATTTTGCACGA 57.997 33.333 0.00 0.00 0.00 4.35
7223 10175 6.237542 CCATCCGAAGATTTTTATTTTGCACG 60.238 38.462 0.00 0.00 0.00 5.34
7224 10176 6.811170 TCCATCCGAAGATTTTTATTTTGCAC 59.189 34.615 0.00 0.00 0.00 4.57
7225 10177 6.929625 TCCATCCGAAGATTTTTATTTTGCA 58.070 32.000 0.00 0.00 0.00 4.08
7226 10178 7.826260 TTCCATCCGAAGATTTTTATTTTGC 57.174 32.000 0.00 0.00 0.00 3.68
7227 10179 8.382875 GCTTTCCATCCGAAGATTTTTATTTTG 58.617 33.333 0.00 0.00 0.00 2.44
7228 10180 8.314021 AGCTTTCCATCCGAAGATTTTTATTTT 58.686 29.630 0.00 0.00 0.00 1.82
7229 10181 7.840931 AGCTTTCCATCCGAAGATTTTTATTT 58.159 30.769 0.00 0.00 0.00 1.40
7230 10182 7.410120 AGCTTTCCATCCGAAGATTTTTATT 57.590 32.000 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.