Multiple sequence alignment - TraesCS1D01G121600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G121600 chr1D 100.000 8998 0 0 1 8998 121405481 121396484 0.000000e+00 16617.0
1 TraesCS1D01G121600 chr1D 93.023 301 20 1 8699 8998 431627468 431627168 1.070000e-118 438.0
2 TraesCS1D01G121600 chr1D 100.000 74 0 0 1814 1887 121403595 121403522 4.380000e-28 137.0
3 TraesCS1D01G121600 chr1D 100.000 74 0 0 1887 1960 121403668 121403595 4.380000e-28 137.0
4 TraesCS1D01G121600 chr7A 95.228 4904 162 25 2699 7599 556331487 556326653 0.000000e+00 7694.0
5 TraesCS1D01G121600 chr5A 95.146 4903 168 22 2699 7599 480337422 480342256 0.000000e+00 7672.0
6 TraesCS1D01G121600 chr5A 94.574 4902 179 29 2699 7598 36385142 36389958 0.000000e+00 7498.0
7 TraesCS1D01G121600 chr6D 98.004 4059 62 6 2699 6754 432854497 432858539 0.000000e+00 7029.0
8 TraesCS1D01G121600 chr6D 98.012 855 17 0 6744 7598 432870216 432871070 0.000000e+00 1485.0
9 TraesCS1D01G121600 chr6D 92.977 299 19 2 8700 8997 7515238 7514941 1.390000e-117 435.0
10 TraesCS1D01G121600 chr1B 92.247 3689 221 21 2701 6386 46976430 46972804 0.000000e+00 5168.0
11 TraesCS1D01G121600 chr1B 92.954 2881 182 13 4724 7598 582120516 582117651 0.000000e+00 4176.0
12 TraesCS1D01G121600 chr1B 94.038 2650 144 7 4724 7370 637931064 637928426 0.000000e+00 4006.0
13 TraesCS1D01G121600 chr1B 92.559 1962 113 11 2699 4653 637933010 637931075 0.000000e+00 2784.0
14 TraesCS1D01G121600 chr1B 92.699 1712 55 27 218 1887 185225206 185223523 0.000000e+00 2405.0
15 TraesCS1D01G121600 chr1B 94.581 1218 65 1 6383 7599 46966362 46965145 0.000000e+00 1882.0
16 TraesCS1D01G121600 chr1B 93.333 810 41 8 1899 2701 185223588 185222785 0.000000e+00 1184.0
17 TraesCS1D01G121600 chr1B 92.287 739 55 2 3842 4578 582128936 582128198 0.000000e+00 1048.0
18 TraesCS1D01G121600 chr1B 95.669 508 21 1 7602 8108 185222791 185222284 0.000000e+00 815.0
19 TraesCS1D01G121600 chr1B 93.667 300 18 1 8700 8998 94551055 94551354 1.780000e-121 448.0
20 TraesCS1D01G121600 chr1B 93.667 300 18 1 8700 8998 95306491 95306790 1.780000e-121 448.0
21 TraesCS1D01G121600 chr1B 100.000 49 0 0 10 58 185225251 185225203 3.460000e-14 91.6
22 TraesCS1D01G121600 chr1B 100.000 32 0 0 4670 4701 637931091 637931060 9.760000e-05 60.2
23 TraesCS1D01G121600 chr2D 92.520 2393 138 11 2699 5089 232813023 232810670 0.000000e+00 3389.0
24 TraesCS1D01G121600 chr2D 94.310 1898 95 3 5086 6983 232809125 232807241 0.000000e+00 2894.0
25 TraesCS1D01G121600 chr2D 92.739 303 21 1 8697 8998 72485571 72485873 3.860000e-118 436.0
26 TraesCS1D01G121600 chr2D 95.294 170 8 0 54 223 637588075 637587906 4.140000e-68 270.0
27 TraesCS1D01G121600 chr2D 100.000 28 0 0 4689 4716 232811163 232811136 1.600000e-02 52.8
28 TraesCS1D01G121600 chr3D 97.761 1697 37 1 5107 6803 464101853 464103548 0.000000e+00 2922.0
29 TraesCS1D01G121600 chr3D 97.034 1551 33 2 3556 5105 464091794 464093332 0.000000e+00 2597.0
30 TraesCS1D01G121600 chr3D 97.267 805 19 2 6796 7599 464108056 464108858 0.000000e+00 1362.0
31 TraesCS1D01G121600 chr3D 96.407 167 5 1 55 221 450884459 450884624 3.200000e-69 274.0
32 TraesCS1D01G121600 chr3D 94.798 173 9 0 55 227 324359660 324359832 4.140000e-68 270.0
33 TraesCS1D01G121600 chr3D 95.294 170 8 0 55 224 556140978 556141147 4.140000e-68 270.0
34 TraesCS1D01G121600 chr3D 100.000 28 0 0 4689 4716 464092796 464092823 1.600000e-02 52.8
35 TraesCS1D01G121600 chr2B 93.965 1657 90 10 2698 4347 15621866 15620213 0.000000e+00 2497.0
36 TraesCS1D01G121600 chr2B 87.193 773 46 16 4343 5114 15611555 15610835 0.000000e+00 830.0
37 TraesCS1D01G121600 chr3A 87.711 2132 215 13 5472 7598 136447175 136449264 0.000000e+00 2442.0
38 TraesCS1D01G121600 chr3A 90.790 1759 155 7 2733 4487 136431879 136433634 0.000000e+00 2344.0
39 TraesCS1D01G121600 chr1A 94.624 1116 39 10 783 1887 133166741 133165636 0.000000e+00 1709.0
40 TraesCS1D01G121600 chr1A 92.576 1145 60 11 7602 8727 133164874 133163736 0.000000e+00 1620.0
41 TraesCS1D01G121600 chr1A 96.970 660 16 2 1 657 133171515 133170857 0.000000e+00 1105.0
42 TraesCS1D01G121600 chr1A 87.521 601 50 6 2103 2701 133165445 133164868 0.000000e+00 671.0
43 TraesCS1D01G121600 chr1A 83.333 210 22 9 1899 2104 133165701 133165501 2.000000e-41 182.0
44 TraesCS1D01G121600 chr1A 90.361 83 4 3 696 774 133170860 133170778 1.240000e-18 106.0
45 TraesCS1D01G121600 chr5B 90.773 1138 90 7 6465 7599 124588554 124589679 0.000000e+00 1506.0
46 TraesCS1D01G121600 chr4D 93.645 299 17 2 8700 8997 245467049 245467346 6.410000e-121 446.0
47 TraesCS1D01G121600 chr4D 92.977 299 20 1 8700 8997 282093112 282092814 1.390000e-117 435.0
48 TraesCS1D01G121600 chr5D 93.333 300 19 1 8700 8998 16150263 16149964 8.290000e-120 442.0
49 TraesCS1D01G121600 chr5D 97.059 170 5 0 55 224 5112186 5112355 4.110000e-73 287.0
50 TraesCS1D01G121600 chr5D 96.386 166 6 0 55 220 42949560 42949725 3.200000e-69 274.0
51 TraesCS1D01G121600 chr7B 91.857 307 24 1 8693 8998 747893976 747893670 2.320000e-115 427.0
52 TraesCS1D01G121600 chr2A 96.386 166 6 0 54 219 469790035 469790200 3.200000e-69 274.0
53 TraesCS1D01G121600 chr2A 94.382 178 9 1 54 230 389221006 389221183 1.150000e-68 272.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G121600 chr1D 121396484 121405481 8997 True 5630.333333 16617 100.000000 1 8998 3 chr1D.!!$R2 8997
1 TraesCS1D01G121600 chr7A 556326653 556331487 4834 True 7694.000000 7694 95.228000 2699 7599 1 chr7A.!!$R1 4900
2 TraesCS1D01G121600 chr5A 480337422 480342256 4834 False 7672.000000 7672 95.146000 2699 7599 1 chr5A.!!$F2 4900
3 TraesCS1D01G121600 chr5A 36385142 36389958 4816 False 7498.000000 7498 94.574000 2699 7598 1 chr5A.!!$F1 4899
4 TraesCS1D01G121600 chr6D 432854497 432858539 4042 False 7029.000000 7029 98.004000 2699 6754 1 chr6D.!!$F1 4055
5 TraesCS1D01G121600 chr6D 432870216 432871070 854 False 1485.000000 1485 98.012000 6744 7598 1 chr6D.!!$F2 854
6 TraesCS1D01G121600 chr1B 46972804 46976430 3626 True 5168.000000 5168 92.247000 2701 6386 1 chr1B.!!$R2 3685
7 TraesCS1D01G121600 chr1B 582117651 582120516 2865 True 4176.000000 4176 92.954000 4724 7598 1 chr1B.!!$R3 2874
8 TraesCS1D01G121600 chr1B 637928426 637933010 4584 True 2283.400000 4006 95.532333 2699 7370 3 chr1B.!!$R6 4671
9 TraesCS1D01G121600 chr1B 46965145 46966362 1217 True 1882.000000 1882 94.581000 6383 7599 1 chr1B.!!$R1 1216
10 TraesCS1D01G121600 chr1B 185222284 185225251 2967 True 1123.900000 2405 95.425250 10 8108 4 chr1B.!!$R5 8098
11 TraesCS1D01G121600 chr1B 582128198 582128936 738 True 1048.000000 1048 92.287000 3842 4578 1 chr1B.!!$R4 736
12 TraesCS1D01G121600 chr2D 232807241 232813023 5782 True 2111.933333 3389 95.610000 2699 6983 3 chr2D.!!$R2 4284
13 TraesCS1D01G121600 chr3D 464101853 464103548 1695 False 2922.000000 2922 97.761000 5107 6803 1 chr3D.!!$F3 1696
14 TraesCS1D01G121600 chr3D 464108056 464108858 802 False 1362.000000 1362 97.267000 6796 7599 1 chr3D.!!$F4 803
15 TraesCS1D01G121600 chr3D 464091794 464093332 1538 False 1324.900000 2597 98.517000 3556 5105 2 chr3D.!!$F6 1549
16 TraesCS1D01G121600 chr2B 15620213 15621866 1653 True 2497.000000 2497 93.965000 2698 4347 1 chr2B.!!$R2 1649
17 TraesCS1D01G121600 chr2B 15610835 15611555 720 True 830.000000 830 87.193000 4343 5114 1 chr2B.!!$R1 771
18 TraesCS1D01G121600 chr3A 136447175 136449264 2089 False 2442.000000 2442 87.711000 5472 7598 1 chr3A.!!$F2 2126
19 TraesCS1D01G121600 chr3A 136431879 136433634 1755 False 2344.000000 2344 90.790000 2733 4487 1 chr3A.!!$F1 1754
20 TraesCS1D01G121600 chr1A 133163736 133166741 3005 True 1045.500000 1709 89.513500 783 8727 4 chr1A.!!$R1 7944
21 TraesCS1D01G121600 chr1A 133170778 133171515 737 True 605.500000 1105 93.665500 1 774 2 chr1A.!!$R2 773
22 TraesCS1D01G121600 chr5B 124588554 124589679 1125 False 1506.000000 1506 90.773000 6465 7599 1 chr5B.!!$F1 1134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 954 0.602905 GGTTGAAGTGTCCCACTCGG 60.603 60.0 0.0 0.0 44.62 4.63 F
1755 1788 0.654472 CACACACGCACGCTTTCTTC 60.654 55.0 0.0 0.0 0.00 2.87 F
2459 2561 0.836606 TGCAGTCTTTCCTGGTGTGA 59.163 50.0 0.0 0.0 32.92 3.58 F
3819 3925 0.960861 AGATCGTGGAGCAGTGTCGA 60.961 55.0 0.0 0.0 35.14 4.20 F
3877 3983 0.172803 GGAGATACGCCACGTCAGTT 59.827 55.0 0.0 0.0 41.54 3.16 F
4874 4981 0.248907 ACATGATCGTCGTAAGCCGG 60.249 55.0 0.0 0.0 37.11 6.13 F
5488 5596 1.438651 TGCATAGAACGCCACAAGAC 58.561 50.0 0.0 0.0 0.00 3.01 F
7148 13600 0.474660 AGCCTGAACTTGGAGAGGGT 60.475 55.0 0.0 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2503 2605 0.169672 CAATGCGAGTCCCTGCAAAG 59.830 55.000 0.00 0.0 45.45 2.77 R
3699 3805 0.456995 GTCTCGTGGCTTCTTCCTCG 60.457 60.000 0.00 0.0 42.53 4.63 R
3877 3983 0.106569 TCTTCATACTACGGCGGGGA 60.107 55.000 13.24 0.0 0.00 4.81 R
5062 5169 1.227823 CTCACAAACTCGCACCCCA 60.228 57.895 0.00 0.0 0.00 4.96 R
5191 5299 4.557605 CAATCGCCGCCCATGCAC 62.558 66.667 0.00 0.0 37.32 4.57 R
6764 6874 1.819208 AACGAGCAGTTGCAGCACA 60.819 52.632 2.55 0.0 42.39 4.57 R
7434 13886 0.036294 CCCAAACCGAGTTCTCCTCC 60.036 60.000 0.00 0.0 36.82 4.30 R
8786 15257 0.035458 GCGCCTATGTATCCTGCCTT 59.965 55.000 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 88 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
162 166 5.584649 TGTAGATTCACTTATTTTGCTCCGG 59.415 40.000 0.00 0.00 0.00 5.14
227 231 4.590222 AGAACGGAGGGAGTACTTTGTAAA 59.410 41.667 0.00 0.00 0.00 2.01
459 463 1.053424 AACTGACAACTAGGCCGGAA 58.947 50.000 5.05 0.00 0.00 4.30
477 481 2.287248 GGAAGCAGACAAGACTTGCAAC 60.287 50.000 15.24 7.23 32.62 4.17
580 586 3.953612 TGCACAAGACATGTTCCTTTCTT 59.046 39.130 0.00 0.00 41.46 2.52
592 598 3.524095 TCCTTTCTTCATTTGGGCTGA 57.476 42.857 0.00 0.00 0.00 4.26
593 599 3.424703 TCCTTTCTTCATTTGGGCTGAG 58.575 45.455 0.00 0.00 0.00 3.35
594 600 2.494870 CCTTTCTTCATTTGGGCTGAGG 59.505 50.000 0.00 0.00 0.00 3.86
595 601 2.220653 TTCTTCATTTGGGCTGAGGG 57.779 50.000 0.00 0.00 0.00 4.30
596 602 1.371467 TCTTCATTTGGGCTGAGGGA 58.629 50.000 0.00 0.00 0.00 4.20
597 603 1.710244 TCTTCATTTGGGCTGAGGGAA 59.290 47.619 0.00 0.00 0.00 3.97
598 604 2.312741 TCTTCATTTGGGCTGAGGGAAT 59.687 45.455 0.00 0.00 0.00 3.01
599 605 2.925966 TCATTTGGGCTGAGGGAATT 57.074 45.000 0.00 0.00 0.00 2.17
600 606 4.017591 TCTTCATTTGGGCTGAGGGAATTA 60.018 41.667 0.00 0.00 0.00 1.40
601 607 4.541250 TCATTTGGGCTGAGGGAATTAT 57.459 40.909 0.00 0.00 0.00 1.28
602 608 4.882559 TCATTTGGGCTGAGGGAATTATT 58.117 39.130 0.00 0.00 0.00 1.40
603 609 4.895297 TCATTTGGGCTGAGGGAATTATTC 59.105 41.667 0.00 0.00 0.00 1.75
604 610 4.608170 TTTGGGCTGAGGGAATTATTCT 57.392 40.909 4.87 0.00 0.00 2.40
605 611 3.582998 TGGGCTGAGGGAATTATTCTG 57.417 47.619 4.87 0.00 0.00 3.02
627 633 8.718102 TCTGTTCCTCTAAATAAGCATAACAC 57.282 34.615 0.00 0.00 0.00 3.32
670 677 5.975939 GCTGCAACCATGAAGAAAATCTATC 59.024 40.000 0.00 0.00 33.54 2.08
693 700 2.347452 GGTTGTATGACATGTTCCGTCG 59.653 50.000 0.00 0.00 36.11 5.12
694 701 2.991190 GTTGTATGACATGTTCCGTCGT 59.009 45.455 0.00 0.00 36.11 4.34
707 714 1.134367 TCCGTCGTCCATTCACAGATC 59.866 52.381 0.00 0.00 0.00 2.75
746 761 9.171701 CTTGTAAGCTATATACTCGTCAAGTTC 57.828 37.037 0.00 0.00 39.55 3.01
931 954 0.602905 GGTTGAAGTGTCCCACTCGG 60.603 60.000 0.00 0.00 44.62 4.63
958 981 3.267233 TGCCACTGCAATCCCCCT 61.267 61.111 0.00 0.00 46.66 4.79
959 982 2.757099 GCCACTGCAATCCCCCTG 60.757 66.667 0.00 0.00 37.47 4.45
960 983 2.765969 CCACTGCAATCCCCCTGT 59.234 61.111 0.00 0.00 0.00 4.00
1030 1053 1.068474 CTTCTTGTCCACCGCTAACG 58.932 55.000 0.00 0.00 39.67 3.18
1145 1168 2.285668 CCTTCTCCCTCCCCAGCA 60.286 66.667 0.00 0.00 0.00 4.41
1342 1368 0.886563 CAAGGGGCAGCAAGAAGAAG 59.113 55.000 0.00 0.00 0.00 2.85
1343 1369 0.773644 AAGGGGCAGCAAGAAGAAGA 59.226 50.000 0.00 0.00 0.00 2.87
1344 1370 0.773644 AGGGGCAGCAAGAAGAAGAA 59.226 50.000 0.00 0.00 0.00 2.52
1461 1487 0.930726 AGGAGGAGGAAGAGGACGAT 59.069 55.000 0.00 0.00 0.00 3.73
1755 1788 0.654472 CACACACGCACGCTTTCTTC 60.654 55.000 0.00 0.00 0.00 2.87
1761 1794 1.270147 ACGCACGCTTTCTTCCTTACT 60.270 47.619 0.00 0.00 0.00 2.24
1763 1796 2.689646 GCACGCTTTCTTCCTTACTCT 58.310 47.619 0.00 0.00 0.00 3.24
1784 1817 6.366332 ACTCTCAGTTTGCTCTTGTTAATACG 59.634 38.462 0.00 0.00 0.00 3.06
1810 1853 5.952347 TGATTAGACTGGTCACACTCTATGT 59.048 40.000 3.51 0.00 44.81 2.29
1824 1867 5.848406 CACTCTATGTGTTAGGAAGATCCC 58.152 45.833 0.00 0.00 41.53 3.85
1854 1897 8.064389 TGGGAAATGAAATCATTATTGGTAGGA 58.936 33.333 8.94 0.00 45.06 2.94
1855 1898 8.579863 GGGAAATGAAATCATTATTGGTAGGAG 58.420 37.037 8.94 0.00 45.06 3.69
1856 1899 8.084684 GGAAATGAAATCATTATTGGTAGGAGC 58.915 37.037 8.94 0.00 45.06 4.70
1857 1900 8.773033 AAATGAAATCATTATTGGTAGGAGCT 57.227 30.769 8.94 0.00 45.06 4.09
1858 1901 7.992754 ATGAAATCATTATTGGTAGGAGCTC 57.007 36.000 4.71 4.71 31.37 4.09
1859 1902 6.899089 TGAAATCATTATTGGTAGGAGCTCA 58.101 36.000 17.19 0.00 0.00 4.26
1860 1903 7.345691 TGAAATCATTATTGGTAGGAGCTCAA 58.654 34.615 17.19 1.09 0.00 3.02
1861 1904 7.500227 TGAAATCATTATTGGTAGGAGCTCAAG 59.500 37.037 17.19 0.00 0.00 3.02
1862 1905 6.753913 ATCATTATTGGTAGGAGCTCAAGA 57.246 37.500 17.19 0.00 0.00 3.02
1863 1906 6.166984 TCATTATTGGTAGGAGCTCAAGAG 57.833 41.667 17.19 0.00 0.00 2.85
1864 1907 5.899547 TCATTATTGGTAGGAGCTCAAGAGA 59.100 40.000 17.19 0.00 0.00 3.10
1865 1908 6.384015 TCATTATTGGTAGGAGCTCAAGAGAA 59.616 38.462 17.19 2.61 0.00 2.87
1866 1909 4.751767 ATTGGTAGGAGCTCAAGAGAAG 57.248 45.455 17.19 0.00 0.00 2.85
1867 1910 3.458044 TGGTAGGAGCTCAAGAGAAGA 57.542 47.619 17.19 0.00 0.00 2.87
1868 1911 3.360867 TGGTAGGAGCTCAAGAGAAGAG 58.639 50.000 17.19 0.00 36.21 2.85
1869 1912 3.245443 TGGTAGGAGCTCAAGAGAAGAGT 60.245 47.826 17.19 0.00 35.55 3.24
1870 1913 4.018324 TGGTAGGAGCTCAAGAGAAGAGTA 60.018 45.833 17.19 0.00 35.55 2.59
1871 1914 4.951094 GGTAGGAGCTCAAGAGAAGAGTAA 59.049 45.833 17.19 0.00 35.55 2.24
1872 1915 5.596772 GGTAGGAGCTCAAGAGAAGAGTAAT 59.403 44.000 17.19 0.00 35.55 1.89
1873 1916 6.097696 GGTAGGAGCTCAAGAGAAGAGTAATT 59.902 42.308 17.19 0.00 35.55 1.40
1874 1917 5.976458 AGGAGCTCAAGAGAAGAGTAATTG 58.024 41.667 17.19 0.00 35.55 2.32
1875 1918 5.483583 AGGAGCTCAAGAGAAGAGTAATTGT 59.516 40.000 17.19 0.00 35.55 2.71
1876 1919 6.665680 AGGAGCTCAAGAGAAGAGTAATTGTA 59.334 38.462 17.19 0.00 35.55 2.41
1877 1920 6.754675 GGAGCTCAAGAGAAGAGTAATTGTAC 59.245 42.308 17.19 0.00 35.55 2.90
1878 1921 6.635755 AGCTCAAGAGAAGAGTAATTGTACC 58.364 40.000 0.32 0.00 35.55 3.34
1879 1922 6.211584 AGCTCAAGAGAAGAGTAATTGTACCA 59.788 38.462 0.32 0.00 35.55 3.25
1880 1923 7.044798 GCTCAAGAGAAGAGTAATTGTACCAT 58.955 38.462 0.32 0.00 35.55 3.55
1881 1924 7.010923 GCTCAAGAGAAGAGTAATTGTACCATG 59.989 40.741 0.32 0.00 35.55 3.66
1882 1925 8.134202 TCAAGAGAAGAGTAATTGTACCATGA 57.866 34.615 0.00 0.00 0.00 3.07
1883 1926 8.253810 TCAAGAGAAGAGTAATTGTACCATGAG 58.746 37.037 0.00 0.00 0.00 2.90
1884 1927 6.578023 AGAGAAGAGTAATTGTACCATGAGC 58.422 40.000 0.00 0.00 0.00 4.26
1885 1928 6.155221 AGAGAAGAGTAATTGTACCATGAGCA 59.845 38.462 0.00 0.00 0.00 4.26
1886 1929 6.893583 AGAAGAGTAATTGTACCATGAGCAT 58.106 36.000 0.00 0.00 0.00 3.79
1887 1930 8.023021 AGAAGAGTAATTGTACCATGAGCATA 57.977 34.615 0.00 0.00 0.00 3.14
1888 1931 8.147058 AGAAGAGTAATTGTACCATGAGCATAG 58.853 37.037 0.00 0.00 0.00 2.23
1889 1932 6.763355 AGAGTAATTGTACCATGAGCATAGG 58.237 40.000 0.00 0.00 0.00 2.57
1890 1933 6.554982 AGAGTAATTGTACCATGAGCATAGGA 59.445 38.462 0.00 0.00 0.00 2.94
1891 1934 7.071196 AGAGTAATTGTACCATGAGCATAGGAA 59.929 37.037 0.00 0.00 0.00 3.36
1892 1935 7.220030 AGTAATTGTACCATGAGCATAGGAAG 58.780 38.462 0.00 0.00 0.00 3.46
1893 1936 5.894298 ATTGTACCATGAGCATAGGAAGA 57.106 39.130 0.00 0.00 0.00 2.87
1894 1937 5.894298 TTGTACCATGAGCATAGGAAGAT 57.106 39.130 0.00 0.00 0.00 2.40
1895 1938 5.474578 TGTACCATGAGCATAGGAAGATC 57.525 43.478 0.00 0.00 0.00 2.75
1896 1939 4.284490 TGTACCATGAGCATAGGAAGATCC 59.716 45.833 0.00 0.00 36.58 3.36
1897 1940 2.641815 ACCATGAGCATAGGAAGATCCC 59.358 50.000 0.00 0.00 37.19 3.85
1898 1941 2.911636 CCATGAGCATAGGAAGATCCCT 59.088 50.000 0.00 0.00 37.19 4.20
1899 1942 3.330110 CCATGAGCATAGGAAGATCCCTT 59.670 47.826 0.00 0.00 37.19 3.95
1900 1943 4.202545 CCATGAGCATAGGAAGATCCCTTT 60.203 45.833 0.00 0.00 37.19 3.11
1901 1944 5.383476 CATGAGCATAGGAAGATCCCTTTT 58.617 41.667 0.00 0.00 37.19 2.27
1902 1945 4.785301 TGAGCATAGGAAGATCCCTTTTG 58.215 43.478 0.00 0.00 37.19 2.44
1903 1946 4.140536 GAGCATAGGAAGATCCCTTTTGG 58.859 47.826 0.00 0.00 37.19 3.28
1922 1965 8.895737 CCTTTTGGGAAATGAAATCATTATTGG 58.104 33.333 8.94 1.47 40.03 3.16
1929 1972 8.084684 GGAAATGAAATCATTATTGGTAGGAGC 58.915 37.037 8.94 0.00 45.06 4.70
1979 2022 2.535934 TGTTGCAAATCGCCGTAATC 57.464 45.000 0.00 0.00 41.33 1.75
2018 2061 6.620678 GCAACTTCTAGATGCCAATTTTGTA 58.379 36.000 5.63 0.00 37.96 2.41
2019 2062 7.090173 GCAACTTCTAGATGCCAATTTTGTAA 58.910 34.615 5.63 0.00 37.96 2.41
2020 2063 7.062255 GCAACTTCTAGATGCCAATTTTGTAAC 59.938 37.037 5.63 0.00 37.96 2.50
2021 2064 7.759489 ACTTCTAGATGCCAATTTTGTAACA 57.241 32.000 5.57 0.00 0.00 2.41
2022 2065 7.820648 ACTTCTAGATGCCAATTTTGTAACAG 58.179 34.615 5.57 0.00 0.00 3.16
2047 2090 8.734386 AGTACAATGCTAAAATTTCTCAAGGAG 58.266 33.333 0.00 0.00 0.00 3.69
2089 2133 7.625828 TCTCATACTGTCTAATCTTTGACGA 57.374 36.000 0.00 0.00 36.03 4.20
2109 2153 4.402793 ACGACTGGTGCTAATCAGTAGATT 59.597 41.667 6.29 0.00 43.41 2.40
2129 2230 7.344095 AGATTTGCATTTGATTAAGAGGGAG 57.656 36.000 0.00 0.00 0.00 4.30
2164 2266 5.232838 GTCTTGCATTTTGTGAAGGTCAAAG 59.767 40.000 0.00 0.00 36.40 2.77
2177 2279 6.035975 GTGAAGGTCAAAGGATTTTGTTTGTG 59.964 38.462 0.56 0.00 43.33 3.33
2459 2561 0.836606 TGCAGTCTTTCCTGGTGTGA 59.163 50.000 0.00 0.00 32.92 3.58
2460 2562 1.230324 GCAGTCTTTCCTGGTGTGAC 58.770 55.000 0.00 0.89 32.92 3.67
2489 2591 5.598417 ACAAACCTAGCTGATGTTTTCCTTT 59.402 36.000 0.00 0.00 30.19 3.11
2503 2605 2.826674 TCCTTTCCACATTCCCCATC 57.173 50.000 0.00 0.00 0.00 3.51
2558 2660 2.031944 GCTCGAAGGTCCAACTGTTTTC 60.032 50.000 0.00 0.00 0.00 2.29
2851 2956 4.097286 GGCCGAGATCTGTTAGAGATATCC 59.903 50.000 0.00 0.00 43.79 2.59
3451 3556 4.346129 ACGTATCGGAGAATACGTTTGAC 58.654 43.478 14.37 0.00 46.41 3.18
3541 3647 1.470979 GGACGCGTCATGGTCAAGTAT 60.471 52.381 37.26 0.00 34.87 2.12
3597 3703 4.265056 GGCAACCGGGTCACCAGT 62.265 66.667 6.32 0.00 36.13 4.00
3660 3766 2.154462 GGTCTTACACTGCAACATGCT 58.846 47.619 3.78 0.00 45.31 3.79
3699 3805 2.184579 GGCGTACTGCTCCTGACC 59.815 66.667 9.06 0.00 45.43 4.02
3739 3845 4.429212 CGACGCACACGGATCCCA 62.429 66.667 6.06 0.00 46.04 4.37
3762 3868 2.677875 GAAGTGCAAGGGCCCCAG 60.678 66.667 21.43 13.17 40.13 4.45
3819 3925 0.960861 AGATCGTGGAGCAGTGTCGA 60.961 55.000 0.00 0.00 35.14 4.20
3877 3983 0.172803 GGAGATACGCCACGTCAGTT 59.827 55.000 0.00 0.00 41.54 3.16
4074 4180 2.230750 GGTAGCAGTAGACCTGTTCGTT 59.769 50.000 0.00 0.00 43.55 3.85
4576 4683 4.873129 CGTCGGGCGTCAGGGATG 62.873 72.222 0.00 0.00 35.54 3.51
4581 4688 4.899239 GGCGTCAGGGATGCGGAG 62.899 72.222 4.52 0.00 44.61 4.63
4632 4739 3.470567 GCAGAACCGCGTGTCGAG 61.471 66.667 4.92 1.63 41.67 4.04
4659 4766 2.584608 CCACGGGCCGAAGAATCT 59.415 61.111 35.78 4.66 0.00 2.40
4665 4772 1.884926 GGCCGAAGAATCTGAGCCG 60.885 63.158 3.22 0.00 0.00 5.52
4872 4979 1.209128 CCACATGATCGTCGTAAGCC 58.791 55.000 0.00 0.00 37.18 4.35
4873 4980 0.846401 CACATGATCGTCGTAAGCCG 59.154 55.000 0.00 0.00 38.13 5.52
4874 4981 0.248907 ACATGATCGTCGTAAGCCGG 60.249 55.000 0.00 0.00 37.11 6.13
5062 5169 5.701290 CCGAGAAAAACACAAGGAGTAGAAT 59.299 40.000 0.00 0.00 0.00 2.40
5105 5212 2.683742 CGGTGGCAGTAAGATTGGGATT 60.684 50.000 0.00 0.00 0.00 3.01
5191 5299 2.684881 GGAGTGGTAATGATGTTGGCTG 59.315 50.000 0.00 0.00 0.00 4.85
5382 5490 1.564348 AGAGTTCCATGGGCGGTAAAT 59.436 47.619 13.02 0.00 0.00 1.40
5488 5596 1.438651 TGCATAGAACGCCACAAGAC 58.561 50.000 0.00 0.00 0.00 3.01
5880 5990 5.416947 GTGGAGTTACATCGGTGAATAACT 58.583 41.667 10.54 10.54 39.88 2.24
6258 6368 1.544825 CCGACTGATCCCACTGTGGT 61.545 60.000 24.32 7.89 35.17 4.16
6918 13370 2.288152 GCCTTGATTGAAGCCGTGAAAA 60.288 45.455 0.00 0.00 0.00 2.29
7089 13541 1.069090 GTCGTTGAGCACCCAGTCA 59.931 57.895 0.00 0.00 0.00 3.41
7133 13585 0.911769 TCAATGTGATCCCGAAGCCT 59.088 50.000 0.00 0.00 0.00 4.58
7148 13600 0.474660 AGCCTGAACTTGGAGAGGGT 60.475 55.000 0.00 0.00 0.00 4.34
7211 13663 3.383505 TCATAATCCAACGTGACGAGGAT 59.616 43.478 23.34 23.34 42.86 3.24
7286 13738 1.674322 CGGGGATGCCGAACTGTTT 60.674 57.895 0.00 0.00 0.00 2.83
7344 13796 2.437180 CCGAGCAAGCTCATGGCA 60.437 61.111 20.75 0.00 42.86 4.92
7434 13886 0.997196 GCCTAAACTACGAACGGCAG 59.003 55.000 0.00 0.00 37.48 4.85
7438 13890 0.037605 AAACTACGAACGGCAGGAGG 60.038 55.000 0.00 0.00 0.00 4.30
7440 13892 1.313812 ACTACGAACGGCAGGAGGAG 61.314 60.000 0.00 0.00 0.00 3.69
7441 13893 1.001764 TACGAACGGCAGGAGGAGA 60.002 57.895 0.00 0.00 0.00 3.71
7442 13894 0.609957 TACGAACGGCAGGAGGAGAA 60.610 55.000 0.00 0.00 0.00 2.87
7468 13920 3.588955 GTTTGGGGCAACTGATTTCATC 58.411 45.455 0.00 0.00 0.00 2.92
7561 14013 4.097286 GGCCGAGATCTGTTAGAGATATCC 59.903 50.000 0.00 0.00 43.79 2.59
7599 14051 9.042008 ACAATAATTAGGCTATCTGTTAACACG 57.958 33.333 3.59 1.56 0.00 4.49
7600 14052 9.042008 CAATAATTAGGCTATCTGTTAACACGT 57.958 33.333 3.59 0.00 0.00 4.49
7674 14126 2.873472 CTGGATCTTGCATCAGAGAAGC 59.127 50.000 0.00 0.00 0.00 3.86
7762 14214 5.111293 CCATTTGCAGGTTTGATATGTTCC 58.889 41.667 0.00 0.00 0.00 3.62
7772 14224 1.385347 ATATGTTCCCGGGCTCCCA 60.385 57.895 18.49 9.76 35.37 4.37
7788 14240 3.373830 CTCCCATTCTGAGGTCTCTCTT 58.626 50.000 0.00 0.00 40.58 2.85
7865 14317 2.481952 AGAAGCAGACGAGCAATTTGAC 59.518 45.455 0.00 0.00 36.85 3.18
7998 14450 9.959749 GATCAGAGTACCTATCTAAAAAGTGAG 57.040 37.037 0.00 0.00 0.00 3.51
8001 14453 8.192110 CAGAGTACCTATCTAAAAAGTGAGACC 58.808 40.741 0.00 0.00 0.00 3.85
8003 14455 8.068892 AGTACCTATCTAAAAAGTGAGACCTG 57.931 38.462 0.00 0.00 0.00 4.00
8095 14548 4.454231 CATACAGTTACACAAGTGCAACG 58.546 43.478 9.86 8.05 45.86 4.10
8171 14641 6.431234 CAGGTTCCTACAACTTTTAGCTCATT 59.569 38.462 0.00 0.00 0.00 2.57
8188 14658 4.558860 GCTCATTTGTTAATCCTCAAACGC 59.441 41.667 0.00 0.00 36.58 4.84
8215 14685 5.451659 GCCACACAACCATGAATTGCATATA 60.452 40.000 8.98 0.00 34.82 0.86
8216 14686 5.978919 CCACACAACCATGAATTGCATATAC 59.021 40.000 8.98 0.00 34.82 1.47
8269 14739 2.146342 CTGACAGAGATGCACCGTTTT 58.854 47.619 0.00 0.00 0.00 2.43
8273 14743 3.472652 ACAGAGATGCACCGTTTTGTTA 58.527 40.909 0.00 0.00 0.00 2.41
8291 14761 7.704789 TTTGTTAACCTCTCTTCGTCTTAAC 57.295 36.000 2.48 0.00 0.00 2.01
8301 14771 3.695060 TCTTCGTCTTAACTGGAGGCTAG 59.305 47.826 0.00 0.00 0.00 3.42
8305 14775 3.429135 CGTCTTAACTGGAGGCTAGTTCC 60.429 52.174 5.96 8.10 39.06 3.62
8382 14852 1.571460 GAGAACCGTGCTGCTTGTG 59.429 57.895 0.00 0.00 0.00 3.33
8398 14868 4.402155 TGCTTGTGAATGTCTTCCTTTTGT 59.598 37.500 0.00 0.00 0.00 2.83
8410 14880 2.706890 TCCTTTTGTGCGGGAATACTC 58.293 47.619 0.00 0.00 0.00 2.59
8432 14902 3.306166 CGTTAAAGTCATTCGGCTGGTAG 59.694 47.826 0.00 0.00 0.00 3.18
8444 14914 2.659428 GGCTGGTAGATTTGGCTCAAT 58.341 47.619 0.00 0.00 0.00 2.57
8464 14934 7.761249 GCTCAATTTTGTGCTATATGGAACTTT 59.239 33.333 9.45 0.00 42.56 2.66
8493 14963 4.502105 TTGCTGTAAGAATAGGCATGGA 57.498 40.909 0.00 0.00 34.07 3.41
8517 14987 7.278203 GGAAACAAAAAGGGAAATCGTGTTTAA 59.722 33.333 0.00 0.00 37.72 1.52
8563 15033 8.014322 TCGAACAGTAAATTAGCAACAACTAG 57.986 34.615 0.00 0.00 0.00 2.57
8727 15198 4.186159 GCTTCGCCCCGCTTTATATATAA 58.814 43.478 0.81 0.81 0.00 0.98
8728 15199 4.632688 GCTTCGCCCCGCTTTATATATAAA 59.367 41.667 15.47 15.47 0.00 1.40
8729 15200 8.101589 GGCTTCGCCCCGCTTTATATATAAAG 62.102 46.154 29.34 29.34 45.20 1.85
8730 15201 5.410355 TCGCCCCGCTTTATATATAAAGT 57.590 39.130 31.63 0.00 46.78 2.66
8731 15202 6.528537 TCGCCCCGCTTTATATATAAAGTA 57.471 37.500 31.63 15.18 46.78 2.24
8732 15203 6.934056 TCGCCCCGCTTTATATATAAAGTAA 58.066 36.000 31.63 15.65 46.78 2.24
8733 15204 7.385267 TCGCCCCGCTTTATATATAAAGTAAA 58.615 34.615 31.63 16.37 46.78 2.01
8734 15205 7.546667 TCGCCCCGCTTTATATATAAAGTAAAG 59.453 37.037 31.63 23.13 46.78 1.85
8735 15206 7.546667 CGCCCCGCTTTATATATAAAGTAAAGA 59.453 37.037 31.63 8.29 46.78 2.52
8736 15207 9.392259 GCCCCGCTTTATATATAAAGTAAAGAT 57.608 33.333 31.63 0.00 46.78 2.40
8750 15221 7.568199 AAAGTAAAGATCATCAATAACCCGG 57.432 36.000 0.00 0.00 0.00 5.73
8751 15222 6.248569 AGTAAAGATCATCAATAACCCGGT 57.751 37.500 0.00 0.00 0.00 5.28
8752 15223 7.369551 AGTAAAGATCATCAATAACCCGGTA 57.630 36.000 0.00 0.00 0.00 4.02
8753 15224 7.215085 AGTAAAGATCATCAATAACCCGGTAC 58.785 38.462 0.00 0.00 0.00 3.34
8754 15225 5.623956 AAGATCATCAATAACCCGGTACA 57.376 39.130 0.00 0.00 0.00 2.90
8755 15226 5.623956 AGATCATCAATAACCCGGTACAA 57.376 39.130 0.00 0.00 0.00 2.41
8756 15227 5.365619 AGATCATCAATAACCCGGTACAAC 58.634 41.667 0.00 0.00 0.00 3.32
8757 15228 3.523547 TCATCAATAACCCGGTACAACG 58.476 45.455 0.00 0.00 0.00 4.10
8758 15229 1.724429 TCAATAACCCGGTACAACGC 58.276 50.000 0.00 0.00 0.00 4.84
8759 15230 1.001746 TCAATAACCCGGTACAACGCA 59.998 47.619 0.00 0.00 0.00 5.24
8760 15231 2.011222 CAATAACCCGGTACAACGCAT 58.989 47.619 0.00 0.00 0.00 4.73
8761 15232 1.658994 ATAACCCGGTACAACGCATG 58.341 50.000 0.00 0.00 0.00 4.06
8762 15233 0.321021 TAACCCGGTACAACGCATGT 59.679 50.000 0.00 0.00 46.36 3.21
8763 15234 0.952010 AACCCGGTACAACGCATGTC 60.952 55.000 0.00 0.00 42.70 3.06
8764 15235 1.374885 CCCGGTACAACGCATGTCA 60.375 57.895 0.00 0.00 42.70 3.58
8765 15236 1.632046 CCCGGTACAACGCATGTCAC 61.632 60.000 0.00 0.00 42.70 3.67
8766 15237 1.632046 CCGGTACAACGCATGTCACC 61.632 60.000 0.00 4.68 42.70 4.02
8767 15238 0.946700 CGGTACAACGCATGTCACCA 60.947 55.000 14.72 0.00 42.70 4.17
8768 15239 0.796312 GGTACAACGCATGTCACCAG 59.204 55.000 0.00 0.00 42.70 4.00
8769 15240 1.606994 GGTACAACGCATGTCACCAGA 60.607 52.381 0.00 0.00 42.70 3.86
8770 15241 2.139917 GTACAACGCATGTCACCAGAA 58.860 47.619 0.00 0.00 42.70 3.02
8771 15242 0.944386 ACAACGCATGTCACCAGAAC 59.056 50.000 0.00 0.00 37.96 3.01
8772 15243 0.943673 CAACGCATGTCACCAGAACA 59.056 50.000 0.00 0.00 0.00 3.18
8773 15244 1.536766 CAACGCATGTCACCAGAACAT 59.463 47.619 0.00 0.00 0.00 2.71
8774 15245 2.741517 CAACGCATGTCACCAGAACATA 59.258 45.455 0.00 0.00 0.00 2.29
8775 15246 2.346803 ACGCATGTCACCAGAACATAC 58.653 47.619 0.00 0.00 0.00 2.39
8776 15247 1.324435 CGCATGTCACCAGAACATACG 59.676 52.381 0.00 0.00 0.00 3.06
8777 15248 1.062587 GCATGTCACCAGAACATACGC 59.937 52.381 0.00 0.00 0.00 4.42
8778 15249 2.345876 CATGTCACCAGAACATACGCA 58.654 47.619 0.00 0.00 0.00 5.24
8779 15250 1.790755 TGTCACCAGAACATACGCAC 58.209 50.000 0.00 0.00 0.00 5.34
8780 15251 1.069358 TGTCACCAGAACATACGCACA 59.931 47.619 0.00 0.00 0.00 4.57
8781 15252 1.459592 GTCACCAGAACATACGCACAC 59.540 52.381 0.00 0.00 0.00 3.82
8782 15253 1.069358 TCACCAGAACATACGCACACA 59.931 47.619 0.00 0.00 0.00 3.72
8783 15254 1.194547 CACCAGAACATACGCACACAC 59.805 52.381 0.00 0.00 0.00 3.82
8784 15255 0.796312 CCAGAACATACGCACACACC 59.204 55.000 0.00 0.00 0.00 4.16
8785 15256 0.796312 CAGAACATACGCACACACCC 59.204 55.000 0.00 0.00 0.00 4.61
8786 15257 0.394938 AGAACATACGCACACACCCA 59.605 50.000 0.00 0.00 0.00 4.51
8787 15258 1.202710 AGAACATACGCACACACCCAA 60.203 47.619 0.00 0.00 0.00 4.12
8788 15259 1.196808 GAACATACGCACACACCCAAG 59.803 52.381 0.00 0.00 0.00 3.61
8789 15260 0.605319 ACATACGCACACACCCAAGG 60.605 55.000 0.00 0.00 0.00 3.61
8790 15261 1.674322 ATACGCACACACCCAAGGC 60.674 57.895 0.00 0.00 0.00 4.35
8791 15262 2.404566 ATACGCACACACCCAAGGCA 62.405 55.000 0.00 0.00 0.00 4.75
8792 15263 3.663176 CGCACACACCCAAGGCAG 61.663 66.667 0.00 0.00 0.00 4.85
8793 15264 3.297620 GCACACACCCAAGGCAGG 61.298 66.667 0.00 0.00 0.00 4.85
8794 15265 2.515398 CACACACCCAAGGCAGGA 59.485 61.111 0.00 0.00 0.00 3.86
8795 15266 1.075482 CACACACCCAAGGCAGGAT 59.925 57.895 0.00 0.00 0.00 3.24
8796 15267 0.327924 CACACACCCAAGGCAGGATA 59.672 55.000 0.00 0.00 0.00 2.59
8797 15268 0.328258 ACACACCCAAGGCAGGATAC 59.672 55.000 0.00 0.00 0.00 2.24
8798 15269 0.327924 CACACCCAAGGCAGGATACA 59.672 55.000 0.00 0.00 41.41 2.29
8799 15270 1.064463 CACACCCAAGGCAGGATACAT 60.064 52.381 0.00 0.00 41.41 2.29
8800 15271 2.172505 CACACCCAAGGCAGGATACATA 59.827 50.000 0.00 0.00 41.41 2.29
8801 15272 2.439507 ACACCCAAGGCAGGATACATAG 59.560 50.000 0.00 0.00 41.41 2.23
8802 15273 2.057922 ACCCAAGGCAGGATACATAGG 58.942 52.381 0.00 0.00 41.41 2.57
8803 15274 1.271597 CCCAAGGCAGGATACATAGGC 60.272 57.143 0.00 0.00 41.41 3.93
8804 15275 1.609061 CCAAGGCAGGATACATAGGCG 60.609 57.143 0.00 0.00 41.41 5.52
8805 15276 0.035458 AAGGCAGGATACATAGGCGC 59.965 55.000 0.00 0.00 41.41 6.53
8806 15277 0.833834 AGGCAGGATACATAGGCGCT 60.834 55.000 7.64 0.00 41.41 5.92
8807 15278 0.671781 GGCAGGATACATAGGCGCTG 60.672 60.000 7.64 0.00 41.41 5.18
8808 15279 0.318441 GCAGGATACATAGGCGCTGA 59.682 55.000 7.64 0.00 41.41 4.26
8809 15280 1.671261 GCAGGATACATAGGCGCTGAG 60.671 57.143 7.64 0.00 41.41 3.35
8810 15281 0.605589 AGGATACATAGGCGCTGAGC 59.394 55.000 7.64 0.00 43.13 4.26
8827 15298 2.901840 CGCAGCAACACCACACCT 60.902 61.111 0.00 0.00 0.00 4.00
8828 15299 1.596752 CGCAGCAACACCACACCTA 60.597 57.895 0.00 0.00 0.00 3.08
8829 15300 1.568612 CGCAGCAACACCACACCTAG 61.569 60.000 0.00 0.00 0.00 3.02
8830 15301 1.856265 GCAGCAACACCACACCTAGC 61.856 60.000 0.00 0.00 0.00 3.42
8831 15302 0.534877 CAGCAACACCACACCTAGCA 60.535 55.000 0.00 0.00 0.00 3.49
8832 15303 0.535102 AGCAACACCACACCTAGCAC 60.535 55.000 0.00 0.00 0.00 4.40
8833 15304 0.535102 GCAACACCACACCTAGCACT 60.535 55.000 0.00 0.00 0.00 4.40
8834 15305 1.270625 GCAACACCACACCTAGCACTA 60.271 52.381 0.00 0.00 0.00 2.74
8835 15306 2.413837 CAACACCACACCTAGCACTAC 58.586 52.381 0.00 0.00 0.00 2.73
8836 15307 1.712056 ACACCACACCTAGCACTACA 58.288 50.000 0.00 0.00 0.00 2.74
8837 15308 2.257207 ACACCACACCTAGCACTACAT 58.743 47.619 0.00 0.00 0.00 2.29
8838 15309 2.028112 ACACCACACCTAGCACTACATG 60.028 50.000 0.00 0.00 0.00 3.21
8839 15310 2.233676 CACCACACCTAGCACTACATGA 59.766 50.000 0.00 0.00 0.00 3.07
8840 15311 2.497675 ACCACACCTAGCACTACATGAG 59.502 50.000 0.00 0.00 0.00 2.90
8841 15312 2.544685 CACACCTAGCACTACATGAGC 58.455 52.381 0.00 0.00 0.00 4.26
8842 15313 1.482593 ACACCTAGCACTACATGAGCC 59.517 52.381 0.00 0.00 32.56 4.70
8843 15314 1.482182 CACCTAGCACTACATGAGCCA 59.518 52.381 0.00 0.00 32.56 4.75
8844 15315 1.482593 ACCTAGCACTACATGAGCCAC 59.517 52.381 0.00 0.00 32.56 5.01
8845 15316 1.202580 CCTAGCACTACATGAGCCACC 60.203 57.143 0.00 0.00 32.56 4.61
8846 15317 0.459899 TAGCACTACATGAGCCACCG 59.540 55.000 0.00 0.00 32.56 4.94
8847 15318 1.815421 GCACTACATGAGCCACCGG 60.815 63.158 0.00 0.00 0.00 5.28
8848 15319 1.153369 CACTACATGAGCCACCGGG 60.153 63.158 6.32 0.00 37.18 5.73
8849 15320 2.367202 ACTACATGAGCCACCGGGG 61.367 63.158 6.32 0.00 40.85 5.73
8850 15321 3.087253 TACATGAGCCACCGGGGG 61.087 66.667 22.08 22.08 37.04 5.40
8863 15334 3.961414 GGGGGCCTCAACCGTGAA 61.961 66.667 4.16 0.00 31.88 3.18
8864 15335 2.671963 GGGGCCTCAACCGTGAAC 60.672 66.667 0.84 0.00 31.88 3.18
8865 15336 2.112297 GGGCCTCAACCGTGAACA 59.888 61.111 0.84 0.00 31.88 3.18
8866 15337 2.258726 GGGCCTCAACCGTGAACAC 61.259 63.158 0.84 0.00 31.88 3.32
8884 15355 2.261671 GCCACCGCGAAGAGAAGA 59.738 61.111 8.23 0.00 0.00 2.87
8885 15356 1.374252 GCCACCGCGAAGAGAAGAA 60.374 57.895 8.23 0.00 0.00 2.52
8886 15357 1.355066 GCCACCGCGAAGAGAAGAAG 61.355 60.000 8.23 0.00 0.00 2.85
8887 15358 1.355066 CCACCGCGAAGAGAAGAAGC 61.355 60.000 8.23 0.00 0.00 3.86
8888 15359 0.389166 CACCGCGAAGAGAAGAAGCT 60.389 55.000 8.23 0.00 0.00 3.74
8889 15360 1.135373 CACCGCGAAGAGAAGAAGCTA 60.135 52.381 8.23 0.00 0.00 3.32
8890 15361 1.135344 ACCGCGAAGAGAAGAAGCTAC 60.135 52.381 8.23 0.00 0.00 3.58
8891 15362 1.135373 CCGCGAAGAGAAGAAGCTACA 60.135 52.381 8.23 0.00 0.00 2.74
8892 15363 2.480416 CCGCGAAGAGAAGAAGCTACAT 60.480 50.000 8.23 0.00 0.00 2.29
8893 15364 3.243101 CCGCGAAGAGAAGAAGCTACATA 60.243 47.826 8.23 0.00 0.00 2.29
8894 15365 4.541779 CGCGAAGAGAAGAAGCTACATAT 58.458 43.478 0.00 0.00 0.00 1.78
8895 15366 4.381270 CGCGAAGAGAAGAAGCTACATATG 59.619 45.833 0.00 0.00 0.00 1.78
8896 15367 5.524284 GCGAAGAGAAGAAGCTACATATGA 58.476 41.667 10.38 0.00 0.00 2.15
8897 15368 5.401079 GCGAAGAGAAGAAGCTACATATGAC 59.599 44.000 10.38 0.00 0.00 3.06
8898 15369 5.623264 CGAAGAGAAGAAGCTACATATGACG 59.377 44.000 10.38 0.60 0.00 4.35
8899 15370 4.865776 AGAGAAGAAGCTACATATGACGC 58.134 43.478 10.38 10.97 0.00 5.19
8900 15371 4.339530 AGAGAAGAAGCTACATATGACGCA 59.660 41.667 10.38 0.00 0.00 5.24
8901 15372 4.363999 AGAAGAAGCTACATATGACGCAC 58.636 43.478 10.38 9.21 0.00 5.34
8902 15373 3.099267 AGAAGCTACATATGACGCACC 57.901 47.619 10.38 7.03 0.00 5.01
8903 15374 1.787155 GAAGCTACATATGACGCACCG 59.213 52.381 10.38 0.00 0.00 4.94
8904 15375 0.744874 AGCTACATATGACGCACCGT 59.255 50.000 10.38 0.00 45.10 4.83
8905 15376 0.852777 GCTACATATGACGCACCGTG 59.147 55.000 10.38 0.00 41.37 4.94
8906 15377 1.487482 CTACATATGACGCACCGTGG 58.513 55.000 10.38 0.00 41.37 4.94
8907 15378 0.103390 TACATATGACGCACCGTGGG 59.897 55.000 10.38 13.69 41.37 4.61
8908 15379 2.203015 ATATGACGCACCGTGGGC 60.203 61.111 15.08 8.84 41.37 5.36
8909 15380 2.731571 ATATGACGCACCGTGGGCT 61.732 57.895 15.08 3.29 41.37 5.19
8910 15381 2.644555 ATATGACGCACCGTGGGCTC 62.645 60.000 15.08 11.86 41.37 4.70
8931 15402 2.125106 GGCGGTGCCTACAGGAAG 60.125 66.667 0.00 0.00 46.69 3.46
8932 15403 2.125106 GCGGTGCCTACAGGAAGG 60.125 66.667 0.00 0.00 39.87 3.46
8933 15404 2.955881 GCGGTGCCTACAGGAAGGT 61.956 63.158 0.00 0.00 39.02 3.50
8934 15405 1.677552 CGGTGCCTACAGGAAGGTT 59.322 57.895 0.00 0.00 39.02 3.50
8935 15406 0.899720 CGGTGCCTACAGGAAGGTTA 59.100 55.000 0.00 0.00 39.02 2.85
8936 15407 1.405121 CGGTGCCTACAGGAAGGTTAC 60.405 57.143 0.00 0.00 39.02 2.50
8937 15408 1.405121 GGTGCCTACAGGAAGGTTACG 60.405 57.143 0.00 0.00 39.02 3.18
8938 15409 1.547372 GTGCCTACAGGAAGGTTACGA 59.453 52.381 0.00 0.00 39.02 3.43
8939 15410 1.547372 TGCCTACAGGAAGGTTACGAC 59.453 52.381 0.00 0.00 39.02 4.34
8940 15411 1.547372 GCCTACAGGAAGGTTACGACA 59.453 52.381 0.00 0.00 39.02 4.35
8941 15412 2.673326 GCCTACAGGAAGGTTACGACAC 60.673 54.545 0.00 0.00 39.02 3.67
8942 15413 2.094338 CCTACAGGAAGGTTACGACACC 60.094 54.545 0.00 0.00 37.39 4.16
8943 15414 0.316204 ACAGGAAGGTTACGACACCG 59.684 55.000 0.00 0.00 42.33 4.94
8944 15415 0.599558 CAGGAAGGTTACGACACCGA 59.400 55.000 0.00 0.00 42.33 4.69
8945 15416 1.000060 CAGGAAGGTTACGACACCGAA 60.000 52.381 0.00 0.00 42.33 4.30
8946 15417 1.271656 AGGAAGGTTACGACACCGAAG 59.728 52.381 0.00 0.00 42.33 3.79
8947 15418 1.066136 GAAGGTTACGACACCGAAGC 58.934 55.000 0.00 0.00 42.33 3.86
8948 15419 0.665369 AAGGTTACGACACCGAAGCG 60.665 55.000 0.00 0.00 42.33 4.68
8949 15420 1.372128 GGTTACGACACCGAAGCGT 60.372 57.895 0.00 0.00 41.58 5.07
8950 15421 1.339946 GGTTACGACACCGAAGCGTC 61.340 60.000 0.00 0.00 39.24 5.19
8976 15447 3.543537 CCGACCCAGGGATCAGAG 58.456 66.667 14.54 0.00 0.00 3.35
8977 15448 1.381872 CCGACCCAGGGATCAGAGT 60.382 63.158 14.54 0.00 0.00 3.24
8978 15449 0.978146 CCGACCCAGGGATCAGAGTT 60.978 60.000 14.54 0.00 0.00 3.01
8979 15450 0.905357 CGACCCAGGGATCAGAGTTT 59.095 55.000 14.54 0.00 0.00 2.66
8980 15451 1.134670 CGACCCAGGGATCAGAGTTTC 60.135 57.143 14.54 0.00 0.00 2.78
8981 15452 1.210722 GACCCAGGGATCAGAGTTTCC 59.789 57.143 14.54 0.00 0.00 3.13
8985 15456 1.527370 GGGATCAGAGTTTCCCCCG 59.473 63.158 0.00 0.00 45.08 5.73
8986 15457 1.527370 GGATCAGAGTTTCCCCCGG 59.473 63.158 0.00 0.00 0.00 5.73
8987 15458 0.981277 GGATCAGAGTTTCCCCCGGA 60.981 60.000 0.73 0.00 0.00 5.14
8988 15459 0.466124 GATCAGAGTTTCCCCCGGAG 59.534 60.000 0.73 0.00 31.21 4.63
8989 15460 1.627297 ATCAGAGTTTCCCCCGGAGC 61.627 60.000 0.73 0.00 31.21 4.70
8990 15461 2.203938 AGAGTTTCCCCCGGAGCA 60.204 61.111 0.73 0.00 31.21 4.26
8991 15462 1.846124 AGAGTTTCCCCCGGAGCAA 60.846 57.895 0.73 0.00 31.21 3.91
8992 15463 1.674651 GAGTTTCCCCCGGAGCAAC 60.675 63.158 0.73 0.23 31.21 4.17
8993 15464 2.114411 GTTTCCCCCGGAGCAACA 59.886 61.111 0.73 0.00 31.21 3.33
8994 15465 2.114411 TTTCCCCCGGAGCAACAC 59.886 61.111 0.73 0.00 31.21 3.32
8995 15466 3.835790 TTTCCCCCGGAGCAACACG 62.836 63.158 0.73 0.00 31.21 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 88 8.684386 TGTTGTAGTCCATTTGAAATGTCTAA 57.316 30.769 15.93 4.89 0.00 2.10
162 166 6.402222 AGAGATTCCAACAAGTGACTACATC 58.598 40.000 0.00 0.00 0.00 3.06
204 208 2.606378 ACAAAGTACTCCCTCCGTTCT 58.394 47.619 0.00 0.00 0.00 3.01
459 463 1.312815 GGTTGCAAGTCTTGTCTGCT 58.687 50.000 14.03 0.00 0.00 4.24
487 491 9.034544 GTGTTTCTTCAAAATTTATGTGCTCTT 57.965 29.630 0.00 0.00 0.00 2.85
569 575 3.321682 CAGCCCAAATGAAGAAAGGAACA 59.678 43.478 0.00 0.00 0.00 3.18
580 586 2.925966 AATTCCCTCAGCCCAAATGA 57.074 45.000 0.00 0.00 0.00 2.57
600 606 9.905713 TGTTATGCTTATTTAGAGGAACAGAAT 57.094 29.630 0.00 0.00 0.00 2.40
601 607 9.162764 GTGTTATGCTTATTTAGAGGAACAGAA 57.837 33.333 0.00 0.00 0.00 3.02
602 608 7.491372 CGTGTTATGCTTATTTAGAGGAACAGA 59.509 37.037 0.00 0.00 0.00 3.41
603 609 7.491372 TCGTGTTATGCTTATTTAGAGGAACAG 59.509 37.037 0.00 0.00 0.00 3.16
604 610 7.324935 TCGTGTTATGCTTATTTAGAGGAACA 58.675 34.615 0.00 0.00 0.00 3.18
605 611 7.766219 TCGTGTTATGCTTATTTAGAGGAAC 57.234 36.000 0.00 0.00 0.00 3.62
618 624 3.244976 GCAAAATGCTTCGTGTTATGCT 58.755 40.909 0.00 0.00 40.96 3.79
627 633 2.129607 GCATATGGGCAAAATGCTTCG 58.870 47.619 4.56 0.00 44.28 3.79
670 677 3.334691 ACGGAACATGTCATACAACCAG 58.665 45.455 0.00 0.00 0.00 4.00
693 700 3.438087 CCAGTTGTGATCTGTGAATGGAC 59.562 47.826 0.00 0.00 0.00 4.02
694 701 3.072915 ACCAGTTGTGATCTGTGAATGGA 59.927 43.478 10.71 0.00 0.00 3.41
707 714 3.885484 CTTACAAGCAGACCAGTTGTG 57.115 47.619 0.00 0.00 35.95 3.33
720 727 9.171701 GAACTTGACGAGTATATAGCTTACAAG 57.828 37.037 0.00 0.00 37.72 3.16
772 787 9.958180 TTGTTCTCATCACAATAAATAAGGAGA 57.042 29.630 0.00 0.00 0.00 3.71
779 794 8.193953 ACCCTTTTGTTCTCATCACAATAAAT 57.806 30.769 0.00 0.00 34.13 1.40
883 906 8.055279 TGTTCCACAGAAGAAAAATATCCATC 57.945 34.615 0.00 0.00 30.91 3.51
956 979 2.373502 AGGAAAAAGAGGACAGGACAGG 59.626 50.000 0.00 0.00 0.00 4.00
957 980 3.669536 GAGGAAAAAGAGGACAGGACAG 58.330 50.000 0.00 0.00 0.00 3.51
958 981 2.037251 CGAGGAAAAAGAGGACAGGACA 59.963 50.000 0.00 0.00 0.00 4.02
959 982 2.037381 ACGAGGAAAAAGAGGACAGGAC 59.963 50.000 0.00 0.00 0.00 3.85
960 983 2.326428 ACGAGGAAAAAGAGGACAGGA 58.674 47.619 0.00 0.00 0.00 3.86
1030 1053 2.750888 GGAAGGGCACGAACGATGC 61.751 63.158 0.14 7.14 42.62 3.91
1215 1238 1.589113 GACGAGCAGGAAGAGCAGT 59.411 57.895 0.00 0.00 0.00 4.40
1342 1368 1.223763 GATCCCCTTGGTCGGGTTC 59.776 63.158 0.00 0.00 43.06 3.62
1343 1369 1.540367 TGATCCCCTTGGTCGGGTT 60.540 57.895 0.00 0.00 43.06 4.11
1344 1370 1.995626 CTGATCCCCTTGGTCGGGT 60.996 63.158 0.00 0.00 43.06 5.28
1461 1487 1.005569 AGGTACATCTGGACCTCGTCA 59.994 52.381 8.37 0.00 42.69 4.35
1755 1788 4.636249 ACAAGAGCAAACTGAGAGTAAGG 58.364 43.478 0.00 0.00 0.00 2.69
1761 1794 6.452242 TCGTATTAACAAGAGCAAACTGAGA 58.548 36.000 0.00 0.00 0.00 3.27
1763 1796 6.871492 TCATCGTATTAACAAGAGCAAACTGA 59.129 34.615 0.00 0.00 0.00 3.41
1810 1853 3.920197 TCCCAAAAGGGATCTTCCTAACA 59.080 43.478 0.00 0.00 40.01 2.41
1811 1854 4.586306 TCCCAAAAGGGATCTTCCTAAC 57.414 45.455 0.00 0.00 40.01 2.34
1813 1856 5.255207 TCATTTCCCAAAAGGGATCTTCCTA 59.745 40.000 3.72 0.00 40.01 2.94
1814 1857 4.045846 TCATTTCCCAAAAGGGATCTTCCT 59.954 41.667 3.72 0.00 40.01 3.36
1815 1858 4.352893 TCATTTCCCAAAAGGGATCTTCC 58.647 43.478 3.72 0.00 40.01 3.46
1817 1860 6.501453 TGATTTCATTTCCCAAAAGGGATCTT 59.499 34.615 3.72 0.00 40.01 2.40
1818 1861 6.024893 TGATTTCATTTCCCAAAAGGGATCT 58.975 36.000 3.72 0.00 40.01 2.75
1819 1862 6.298441 TGATTTCATTTCCCAAAAGGGATC 57.702 37.500 3.72 0.00 40.01 3.36
1821 1864 6.700845 AATGATTTCATTTCCCAAAAGGGA 57.299 33.333 0.00 0.00 43.48 4.20
1822 1865 8.895737 CAATAATGATTTCATTTCCCAAAAGGG 58.104 33.333 10.81 0.00 43.48 3.95
1823 1866 8.895737 CCAATAATGATTTCATTTCCCAAAAGG 58.104 33.333 10.81 0.82 43.48 3.11
1824 1867 9.452287 ACCAATAATGATTTCATTTCCCAAAAG 57.548 29.630 10.81 0.00 43.48 2.27
1843 1886 5.958380 TCTTCTCTTGAGCTCCTACCAATAA 59.042 40.000 12.15 0.00 0.00 1.40
1846 1889 3.766591 CTCTTCTCTTGAGCTCCTACCAA 59.233 47.826 12.15 0.00 0.00 3.67
1854 1897 6.211584 TGGTACAATTACTCTTCTCTTGAGCT 59.788 38.462 0.00 0.00 32.45 4.09
1855 1898 6.398918 TGGTACAATTACTCTTCTCTTGAGC 58.601 40.000 0.00 0.00 32.45 4.26
1870 1913 7.961457 GGATCTTCCTATGCTCATGGTACAATT 60.961 40.741 0.00 0.00 35.87 2.32
1871 1914 6.521427 GGATCTTCCTATGCTCATGGTACAAT 60.521 42.308 0.00 0.00 35.87 2.71
1872 1915 5.221722 GGATCTTCCTATGCTCATGGTACAA 60.222 44.000 0.00 0.00 35.87 2.41
1873 1916 4.284490 GGATCTTCCTATGCTCATGGTACA 59.716 45.833 0.00 0.00 36.56 2.90
1874 1917 4.323104 GGGATCTTCCTATGCTCATGGTAC 60.323 50.000 0.00 0.00 36.57 3.34
1875 1918 3.840666 GGGATCTTCCTATGCTCATGGTA 59.159 47.826 0.00 0.00 36.57 3.25
1876 1919 2.641815 GGGATCTTCCTATGCTCATGGT 59.358 50.000 0.00 0.00 36.57 3.55
1877 1920 2.911636 AGGGATCTTCCTATGCTCATGG 59.088 50.000 0.00 0.00 36.57 3.66
1878 1921 4.637387 AAGGGATCTTCCTATGCTCATG 57.363 45.455 0.00 0.00 36.57 3.07
1879 1922 5.383476 CAAAAGGGATCTTCCTATGCTCAT 58.617 41.667 0.00 0.00 36.57 2.90
1880 1923 4.385643 CCAAAAGGGATCTTCCTATGCTCA 60.386 45.833 0.00 0.00 40.01 4.26
1881 1924 4.140536 CCAAAAGGGATCTTCCTATGCTC 58.859 47.826 0.00 0.00 40.01 4.26
1882 1925 3.117360 CCCAAAAGGGATCTTCCTATGCT 60.117 47.826 0.00 0.00 40.01 3.79
1883 1926 3.117512 TCCCAAAAGGGATCTTCCTATGC 60.118 47.826 0.00 0.00 40.01 3.14
1884 1927 4.796110 TCCCAAAAGGGATCTTCCTATG 57.204 45.455 0.00 0.00 40.01 2.23
1885 1928 5.813965 TTTCCCAAAAGGGATCTTCCTAT 57.186 39.130 3.72 0.00 40.01 2.57
1886 1929 5.255207 TCATTTCCCAAAAGGGATCTTCCTA 59.745 40.000 3.72 0.00 40.01 2.94
1887 1930 4.045846 TCATTTCCCAAAAGGGATCTTCCT 59.954 41.667 3.72 0.00 40.01 3.36
1888 1931 4.352893 TCATTTCCCAAAAGGGATCTTCC 58.647 43.478 3.72 0.00 40.01 3.46
1889 1932 6.358974 TTTCATTTCCCAAAAGGGATCTTC 57.641 37.500 3.72 0.00 40.01 2.87
1890 1933 6.501453 TGATTTCATTTCCCAAAAGGGATCTT 59.499 34.615 3.72 0.00 40.01 2.40
1891 1934 6.024893 TGATTTCATTTCCCAAAAGGGATCT 58.975 36.000 3.72 0.00 40.01 2.75
1892 1935 6.298441 TGATTTCATTTCCCAAAAGGGATC 57.702 37.500 3.72 0.00 40.01 3.36
1893 1936 6.896452 ATGATTTCATTTCCCAAAAGGGAT 57.104 33.333 3.72 0.00 37.93 3.85
1894 1937 6.700845 AATGATTTCATTTCCCAAAAGGGA 57.299 33.333 0.00 0.00 43.48 4.20
1895 1938 8.895737 CAATAATGATTTCATTTCCCAAAAGGG 58.104 33.333 10.81 0.00 43.48 3.95
1896 1939 8.895737 CCAATAATGATTTCATTTCCCAAAAGG 58.104 33.333 10.81 0.82 43.48 3.11
1897 1940 9.452287 ACCAATAATGATTTCATTTCCCAAAAG 57.548 29.630 10.81 0.00 43.48 2.27
1900 1943 8.703743 CCTACCAATAATGATTTCATTTCCCAA 58.296 33.333 10.81 0.00 43.48 4.12
1901 1944 8.064389 TCCTACCAATAATGATTTCATTTCCCA 58.936 33.333 10.81 0.00 43.48 4.37
1902 1945 8.477419 TCCTACCAATAATGATTTCATTTCCC 57.523 34.615 10.81 0.00 43.48 3.97
1903 1946 8.084684 GCTCCTACCAATAATGATTTCATTTCC 58.915 37.037 10.81 0.00 43.48 3.13
1904 1947 8.854117 AGCTCCTACCAATAATGATTTCATTTC 58.146 33.333 10.81 0.00 43.48 2.17
1905 1948 8.773033 AGCTCCTACCAATAATGATTTCATTT 57.227 30.769 10.81 0.00 43.48 2.32
1907 1950 7.520798 TGAGCTCCTACCAATAATGATTTCAT 58.479 34.615 12.15 0.00 38.41 2.57
1908 1951 6.899089 TGAGCTCCTACCAATAATGATTTCA 58.101 36.000 12.15 0.00 0.00 2.69
1909 1952 7.716998 TCTTGAGCTCCTACCAATAATGATTTC 59.283 37.037 12.15 0.00 0.00 2.17
1910 1953 7.577303 TCTTGAGCTCCTACCAATAATGATTT 58.423 34.615 12.15 0.00 0.00 2.17
1911 1954 7.071698 TCTCTTGAGCTCCTACCAATAATGATT 59.928 37.037 12.15 0.00 0.00 2.57
1912 1955 6.556495 TCTCTTGAGCTCCTACCAATAATGAT 59.444 38.462 12.15 0.00 0.00 2.45
1913 1956 5.899547 TCTCTTGAGCTCCTACCAATAATGA 59.100 40.000 12.15 0.00 0.00 2.57
1914 1957 6.166984 TCTCTTGAGCTCCTACCAATAATG 57.833 41.667 12.15 0.00 0.00 1.90
1915 1958 6.613271 TCTTCTCTTGAGCTCCTACCAATAAT 59.387 38.462 12.15 0.00 0.00 1.28
1916 1959 5.958380 TCTTCTCTTGAGCTCCTACCAATAA 59.042 40.000 12.15 0.00 0.00 1.40
1917 1960 5.519808 TCTTCTCTTGAGCTCCTACCAATA 58.480 41.667 12.15 0.00 0.00 1.90
1918 1961 4.357325 TCTTCTCTTGAGCTCCTACCAAT 58.643 43.478 12.15 0.00 0.00 3.16
1919 1962 3.766591 CTCTTCTCTTGAGCTCCTACCAA 59.233 47.826 12.15 0.00 0.00 3.67
1920 1963 3.245443 ACTCTTCTCTTGAGCTCCTACCA 60.245 47.826 12.15 0.00 35.12 3.25
1921 1964 3.361786 ACTCTTCTCTTGAGCTCCTACC 58.638 50.000 12.15 0.00 35.12 3.18
1922 1965 6.709018 ATTACTCTTCTCTTGAGCTCCTAC 57.291 41.667 12.15 0.00 35.12 3.18
1973 2016 7.707035 AGTTGCCATACTCTAGAAAAGATTACG 59.293 37.037 0.00 0.00 32.41 3.18
1979 2022 8.470805 TCTAGAAGTTGCCATACTCTAGAAAAG 58.529 37.037 4.96 0.00 35.02 2.27
1994 2037 5.473039 ACAAAATTGGCATCTAGAAGTTGC 58.527 37.500 8.08 8.08 39.54 4.17
2018 2061 9.683069 CTTGAGAAATTTTAGCATTGTACTGTT 57.317 29.630 0.00 0.00 0.00 3.16
2019 2062 8.299570 CCTTGAGAAATTTTAGCATTGTACTGT 58.700 33.333 0.00 0.00 0.00 3.55
2020 2063 8.514594 TCCTTGAGAAATTTTAGCATTGTACTG 58.485 33.333 0.00 0.00 0.00 2.74
2021 2064 8.635765 TCCTTGAGAAATTTTAGCATTGTACT 57.364 30.769 0.00 0.00 0.00 2.73
2022 2065 8.730680 TCTCCTTGAGAAATTTTAGCATTGTAC 58.269 33.333 0.00 0.00 35.59 2.90
2089 2133 4.878397 GCAAATCTACTGATTAGCACCAGT 59.122 41.667 0.00 0.00 41.62 4.00
2109 2153 3.701040 GGCTCCCTCTTAATCAAATGCAA 59.299 43.478 0.00 0.00 0.00 4.08
2129 2230 3.942130 AATGCAAGACCTAGTTTTGGC 57.058 42.857 0.00 0.00 29.93 4.52
2177 2279 9.804758 AGAAGAGCTTTGTTGTAGTGTATATAC 57.195 33.333 5.89 5.89 0.00 1.47
2189 2291 9.683069 AATACATAAACAAGAAGAGCTTTGTTG 57.317 29.630 13.53 13.38 33.60 3.33
2459 2561 7.524717 AAACATCAGCTAGGTTTGTAAATGT 57.475 32.000 7.50 2.28 40.41 2.71
2460 2562 7.542130 GGAAAACATCAGCTAGGTTTGTAAATG 59.458 37.037 9.48 1.78 41.02 2.32
2489 2591 1.076841 TGCAAAGATGGGGAATGTGGA 59.923 47.619 0.00 0.00 0.00 4.02
2503 2605 0.169672 CAATGCGAGTCCCTGCAAAG 59.830 55.000 0.00 0.00 45.45 2.77
2558 2660 2.021355 AAGCTTTCTCCAGCATCTCG 57.979 50.000 0.00 0.00 42.84 4.04
2693 2795 4.143179 CGTAGTTTAGGCTCCTTCAAAACG 60.143 45.833 0.00 0.00 35.67 3.60
2695 2797 5.217978 TCGTAGTTTAGGCTCCTTCAAAA 57.782 39.130 0.00 0.00 0.00 2.44
2696 2798 4.877378 TCGTAGTTTAGGCTCCTTCAAA 57.123 40.909 0.00 0.00 0.00 2.69
2963 3068 4.754114 GCTGATATCATGACCAAAGGACTC 59.246 45.833 5.72 0.00 0.00 3.36
3188 3293 2.223112 CGTTGCTGATTGTGTATGGCTC 60.223 50.000 0.00 0.00 0.00 4.70
3425 3530 1.724018 CGTATTCTCCGATACGTCCGC 60.724 57.143 0.00 0.00 45.92 5.54
3451 3556 1.658717 GACGGTCATCTCGCCATCG 60.659 63.158 2.62 0.00 0.00 3.84
3541 3647 4.697756 CTCGCCGGTGCCCTTCAA 62.698 66.667 11.05 0.00 0.00 2.69
3563 3669 1.152819 CCGATCCCTCCGAGTACCA 60.153 63.158 0.00 0.00 0.00 3.25
3699 3805 0.456995 GTCTCGTGGCTTCTTCCTCG 60.457 60.000 0.00 0.00 42.53 4.63
3739 3845 0.540597 GGCCCTTGCACTTCTTCCTT 60.541 55.000 0.00 0.00 40.13 3.36
3762 3868 0.721718 CGAGTTCGCAATGAAGGACC 59.278 55.000 0.00 0.00 37.23 4.46
3819 3925 1.878656 CGTCTTGACGGCTTCCTCCT 61.879 60.000 14.53 0.00 0.00 3.69
3877 3983 0.106569 TCTTCATACTACGGCGGGGA 60.107 55.000 13.24 0.00 0.00 4.81
4074 4180 1.213678 CCTTCCTCAATGGCATCCTCA 59.786 52.381 0.00 0.00 35.26 3.86
4146 4253 0.235665 CAACGATTCGCACTGTGCTT 59.764 50.000 28.04 13.23 42.25 3.91
4400 4507 4.516195 GGGAAGCTCTCCGCGACC 62.516 72.222 8.23 0.00 46.51 4.79
4404 4511 4.516195 GTCCGGGAAGCTCTCCGC 62.516 72.222 18.74 6.03 46.51 5.54
4413 4520 2.762459 CCATCCTCCGTCCGGGAA 60.762 66.667 0.00 0.00 46.61 3.97
4461 4568 3.136123 CCGAACCCTCGCTACGGA 61.136 66.667 0.00 0.00 45.31 4.69
4628 4735 2.654877 GTGGCTCGGTTTCCTCGA 59.345 61.111 0.00 0.00 35.24 4.04
4647 4754 1.884926 CGGCTCAGATTCTTCGGCC 60.885 63.158 0.00 0.00 35.26 6.13
4872 4979 4.180946 CACGACGCTCCTCCTCCG 62.181 72.222 0.00 0.00 0.00 4.63
4873 4980 3.827898 CCACGACGCTCCTCCTCC 61.828 72.222 0.00 0.00 0.00 4.30
4874 4981 4.500116 GCCACGACGCTCCTCCTC 62.500 72.222 0.00 0.00 0.00 3.71
5062 5169 1.227823 CTCACAAACTCGCACCCCA 60.228 57.895 0.00 0.00 0.00 4.96
5191 5299 4.557605 CAATCGCCGCCCATGCAC 62.558 66.667 0.00 0.00 37.32 4.57
5488 5596 6.291322 CGTAATAAGTCTGAAGTTCATGCTCG 60.291 42.308 5.91 3.85 0.00 5.03
6764 6874 1.819208 AACGAGCAGTTGCAGCACA 60.819 52.632 2.55 0.00 42.39 4.57
6918 13370 1.516365 CCATCTACCTCCGCGACGAT 61.516 60.000 8.23 0.00 0.00 3.73
7116 13568 0.911769 TCAGGCTTCGGGATCACATT 59.088 50.000 0.00 0.00 0.00 2.71
7133 13585 0.764890 CACCACCCTCTCCAAGTTCA 59.235 55.000 0.00 0.00 0.00 3.18
7148 13600 2.361104 GCCGCCAATTCCTCACCA 60.361 61.111 0.00 0.00 0.00 4.17
7211 13663 3.295304 CTCCGCATCCGTGACCACA 62.295 63.158 0.85 0.00 0.00 4.17
7243 13695 0.701310 ACTCAAACCCTTCCCACCCT 60.701 55.000 0.00 0.00 0.00 4.34
7286 13738 0.446616 CTCCGACGACGATGTCTTCA 59.553 55.000 9.28 0.00 42.66 3.02
7331 13783 4.189188 CCGCTGCCATGAGCTTGC 62.189 66.667 5.02 8.87 44.23 4.01
7333 13785 3.694058 CTCCCGCTGCCATGAGCTT 62.694 63.158 5.02 0.00 44.23 3.74
7381 13833 3.676093 TCAGATACCTAGATCGCATCGT 58.324 45.455 0.00 0.00 0.00 3.73
7434 13886 0.036294 CCCAAACCGAGTTCTCCTCC 60.036 60.000 0.00 0.00 36.82 4.30
7438 13890 0.536460 TTGCCCCAAACCGAGTTCTC 60.536 55.000 0.00 0.00 0.00 2.87
7440 13892 0.822121 AGTTGCCCCAAACCGAGTTC 60.822 55.000 0.00 0.00 0.00 3.01
7441 13893 1.106944 CAGTTGCCCCAAACCGAGTT 61.107 55.000 0.00 0.00 0.00 3.01
7442 13894 1.528309 CAGTTGCCCCAAACCGAGT 60.528 57.895 0.00 0.00 0.00 4.18
7599 14051 8.753133 AGGGAATTCCATTAGAAATCAGAAAAC 58.247 33.333 25.67 1.97 36.29 2.43
7600 14052 8.899887 AGGGAATTCCATTAGAAATCAGAAAA 57.100 30.769 25.67 0.00 36.29 2.29
7674 14126 7.142680 GGATCCTCGTTAATAAGAGTTCTCAG 58.857 42.308 3.84 0.00 32.88 3.35
7762 14214 2.507944 CTCAGAATGGGAGCCCGG 59.492 66.667 0.00 0.00 41.11 5.73
7772 14224 2.167487 GCGGAAAGAGAGACCTCAGAAT 59.833 50.000 0.00 0.00 41.87 2.40
7788 14240 1.329292 CAACGAAGAAACACAGCGGAA 59.671 47.619 0.00 0.00 0.00 4.30
7830 14282 3.885297 TCTGCTTCTTCCTTTTTGTCCAG 59.115 43.478 0.00 0.00 0.00 3.86
7865 14317 0.512952 GCACAAGGCTTCTGTACACG 59.487 55.000 0.00 0.00 40.25 4.49
7998 14450 4.715297 TCAGGTATAGGAAAACCTCAGGTC 59.285 45.833 0.00 0.00 44.43 3.85
8001 14453 5.109903 CGTTCAGGTATAGGAAAACCTCAG 58.890 45.833 0.00 0.00 44.43 3.35
8003 14455 4.439968 CCGTTCAGGTATAGGAAAACCTC 58.560 47.826 0.00 0.00 44.43 3.85
8095 14548 9.547753 TCCTTCACTTATCTTCATTATAGCAAC 57.452 33.333 0.00 0.00 0.00 4.17
8171 14641 3.305064 GGCAAGCGTTTGAGGATTAACAA 60.305 43.478 16.78 0.00 36.36 2.83
8188 14658 3.061322 CAATTCATGGTTGTGTGGCAAG 58.939 45.455 0.00 0.00 37.83 4.01
8224 14694 9.520515 AGAAATTAGAAGGTCTTAAGCATTTCA 57.479 29.630 0.00 0.00 32.77 2.69
8269 14739 6.444633 CAGTTAAGACGAAGAGAGGTTAACA 58.555 40.000 8.10 0.00 34.33 2.41
8273 14743 4.150359 TCCAGTTAAGACGAAGAGAGGTT 58.850 43.478 0.00 0.00 0.00 3.50
8291 14761 0.175989 GTTCCGGAACTAGCCTCCAG 59.824 60.000 34.98 1.24 38.25 3.86
8328 14798 2.929641 TCAGCTCTCATCATCGAGACT 58.070 47.619 0.00 0.00 37.12 3.24
8373 14843 2.157738 AGGAAGACATTCACAAGCAGC 58.842 47.619 0.00 0.00 37.15 5.25
8374 14844 4.843220 AAAGGAAGACATTCACAAGCAG 57.157 40.909 0.00 0.00 37.15 4.24
8382 14852 2.351738 CCCGCACAAAAGGAAGACATTC 60.352 50.000 0.00 0.00 34.46 2.67
8398 14868 3.056678 TGACTTTAACGAGTATTCCCGCA 60.057 43.478 0.00 0.00 0.00 5.69
8410 14880 2.073816 ACCAGCCGAATGACTTTAACG 58.926 47.619 0.00 0.00 0.00 3.18
8432 14902 7.170320 CCATATAGCACAAAATTGAGCCAAATC 59.830 37.037 11.17 0.00 44.29 2.17
8444 14914 6.753180 TGCAAAAGTTCCATATAGCACAAAA 58.247 32.000 0.00 0.00 0.00 2.44
8464 14934 5.868801 GCCTATTCTTACAGCAAAAATGCAA 59.131 36.000 3.41 0.00 37.25 4.08
8493 14963 8.549338 TTTAAACACGATTTCCCTTTTTGTTT 57.451 26.923 0.00 0.00 38.75 2.83
8523 14993 4.821805 ACTGTTCGATCAACTGTTTCCAAT 59.178 37.500 11.80 0.00 42.80 3.16
8524 14994 4.196193 ACTGTTCGATCAACTGTTTCCAA 58.804 39.130 11.80 0.00 42.80 3.53
8563 15033 7.139392 TGTATGACGTATCTCATCTGCTTAAC 58.861 38.462 0.00 0.00 32.86 2.01
8619 15089 2.093306 GCACTGTGTGGCATACTGTA 57.907 50.000 22.49 0.11 33.64 2.74
8727 15198 6.659824 ACCGGGTTATTGATGATCTTTACTT 58.340 36.000 6.32 0.00 0.00 2.24
8728 15199 6.248569 ACCGGGTTATTGATGATCTTTACT 57.751 37.500 6.32 0.00 0.00 2.24
8729 15200 6.987992 TGTACCGGGTTATTGATGATCTTTAC 59.012 38.462 4.31 0.00 0.00 2.01
8730 15201 7.127012 TGTACCGGGTTATTGATGATCTTTA 57.873 36.000 4.31 0.00 0.00 1.85
8731 15202 5.996644 TGTACCGGGTTATTGATGATCTTT 58.003 37.500 4.31 0.00 0.00 2.52
8732 15203 5.623956 TGTACCGGGTTATTGATGATCTT 57.376 39.130 4.31 0.00 0.00 2.40
8733 15204 5.365619 GTTGTACCGGGTTATTGATGATCT 58.634 41.667 4.31 0.00 0.00 2.75
8734 15205 4.210537 CGTTGTACCGGGTTATTGATGATC 59.789 45.833 4.31 0.00 0.00 2.92
8735 15206 4.124238 CGTTGTACCGGGTTATTGATGAT 58.876 43.478 4.31 0.00 0.00 2.45
8736 15207 3.523547 CGTTGTACCGGGTTATTGATGA 58.476 45.455 4.31 0.00 0.00 2.92
8737 15208 2.031191 GCGTTGTACCGGGTTATTGATG 59.969 50.000 4.31 0.00 0.00 3.07
8738 15209 2.282407 GCGTTGTACCGGGTTATTGAT 58.718 47.619 4.31 0.00 0.00 2.57
8739 15210 1.001746 TGCGTTGTACCGGGTTATTGA 59.998 47.619 4.31 0.00 0.00 2.57
8740 15211 1.440708 TGCGTTGTACCGGGTTATTG 58.559 50.000 4.31 0.00 0.00 1.90
8741 15212 2.011222 CATGCGTTGTACCGGGTTATT 58.989 47.619 4.31 0.00 0.00 1.40
8742 15213 1.065998 ACATGCGTTGTACCGGGTTAT 60.066 47.619 4.31 0.00 36.57 1.89
8743 15214 0.321021 ACATGCGTTGTACCGGGTTA 59.679 50.000 4.31 0.00 36.57 2.85
8744 15215 0.952010 GACATGCGTTGTACCGGGTT 60.952 55.000 4.31 0.00 39.18 4.11
8745 15216 1.375013 GACATGCGTTGTACCGGGT 60.375 57.895 6.32 4.46 39.18 5.28
8746 15217 1.374885 TGACATGCGTTGTACCGGG 60.375 57.895 6.32 0.00 39.18 5.73
8747 15218 1.632046 GGTGACATGCGTTGTACCGG 61.632 60.000 0.00 0.00 39.18 5.28
8748 15219 0.946700 TGGTGACATGCGTTGTACCG 60.947 55.000 0.00 0.00 39.18 4.02
8749 15220 0.796312 CTGGTGACATGCGTTGTACC 59.204 55.000 0.00 0.00 39.18 3.34
8750 15221 1.790755 TCTGGTGACATGCGTTGTAC 58.209 50.000 0.00 0.00 39.18 2.90
8751 15222 2.139917 GTTCTGGTGACATGCGTTGTA 58.860 47.619 0.00 0.00 39.18 2.41
8752 15223 0.944386 GTTCTGGTGACATGCGTTGT 59.056 50.000 0.00 0.00 42.79 3.32
8753 15224 0.943673 TGTTCTGGTGACATGCGTTG 59.056 50.000 0.00 0.00 41.51 4.10
8754 15225 1.896220 ATGTTCTGGTGACATGCGTT 58.104 45.000 0.00 0.00 41.51 4.84
8755 15226 2.346803 GTATGTTCTGGTGACATGCGT 58.653 47.619 0.00 0.00 41.51 5.24
8756 15227 1.324435 CGTATGTTCTGGTGACATGCG 59.676 52.381 11.90 11.90 41.66 4.73
8757 15228 1.062587 GCGTATGTTCTGGTGACATGC 59.937 52.381 0.00 0.00 41.51 4.06
8758 15229 2.094258 GTGCGTATGTTCTGGTGACATG 59.906 50.000 0.00 0.00 41.51 3.21
8759 15230 2.289382 TGTGCGTATGTTCTGGTGACAT 60.289 45.455 0.00 0.00 41.51 3.06
8760 15231 1.069358 TGTGCGTATGTTCTGGTGACA 59.931 47.619 0.00 0.00 39.59 3.58
8761 15232 1.459592 GTGTGCGTATGTTCTGGTGAC 59.540 52.381 0.00 0.00 0.00 3.67
8762 15233 1.069358 TGTGTGCGTATGTTCTGGTGA 59.931 47.619 0.00 0.00 0.00 4.02
8763 15234 1.194547 GTGTGTGCGTATGTTCTGGTG 59.805 52.381 0.00 0.00 0.00 4.17
8764 15235 1.508632 GTGTGTGCGTATGTTCTGGT 58.491 50.000 0.00 0.00 0.00 4.00
8765 15236 0.796312 GGTGTGTGCGTATGTTCTGG 59.204 55.000 0.00 0.00 0.00 3.86
8766 15237 0.796312 GGGTGTGTGCGTATGTTCTG 59.204 55.000 0.00 0.00 0.00 3.02
8767 15238 0.394938 TGGGTGTGTGCGTATGTTCT 59.605 50.000 0.00 0.00 0.00 3.01
8768 15239 1.196808 CTTGGGTGTGTGCGTATGTTC 59.803 52.381 0.00 0.00 0.00 3.18
8769 15240 1.234821 CTTGGGTGTGTGCGTATGTT 58.765 50.000 0.00 0.00 0.00 2.71
8770 15241 0.605319 CCTTGGGTGTGTGCGTATGT 60.605 55.000 0.00 0.00 0.00 2.29
8771 15242 1.922135 GCCTTGGGTGTGTGCGTATG 61.922 60.000 0.00 0.00 0.00 2.39
8772 15243 1.674322 GCCTTGGGTGTGTGCGTAT 60.674 57.895 0.00 0.00 0.00 3.06
8773 15244 2.281208 GCCTTGGGTGTGTGCGTA 60.281 61.111 0.00 0.00 0.00 4.42
8774 15245 4.497984 TGCCTTGGGTGTGTGCGT 62.498 61.111 0.00 0.00 0.00 5.24
8775 15246 3.663176 CTGCCTTGGGTGTGTGCG 61.663 66.667 0.00 0.00 0.00 5.34
8776 15247 3.297620 CCTGCCTTGGGTGTGTGC 61.298 66.667 0.00 0.00 0.00 4.57
8777 15248 0.327924 TATCCTGCCTTGGGTGTGTG 59.672 55.000 0.00 0.00 0.00 3.82
8778 15249 0.328258 GTATCCTGCCTTGGGTGTGT 59.672 55.000 0.00 0.00 0.00 3.72
8779 15250 0.327924 TGTATCCTGCCTTGGGTGTG 59.672 55.000 0.00 0.00 0.00 3.82
8780 15251 1.298953 ATGTATCCTGCCTTGGGTGT 58.701 50.000 0.00 0.00 0.00 4.16
8781 15252 2.224621 CCTATGTATCCTGCCTTGGGTG 60.225 54.545 0.00 0.00 0.00 4.61
8782 15253 2.057922 CCTATGTATCCTGCCTTGGGT 58.942 52.381 0.00 0.00 0.00 4.51
8783 15254 1.271597 GCCTATGTATCCTGCCTTGGG 60.272 57.143 0.00 0.00 0.00 4.12
8784 15255 1.609061 CGCCTATGTATCCTGCCTTGG 60.609 57.143 0.00 0.00 0.00 3.61
8785 15256 1.800805 CGCCTATGTATCCTGCCTTG 58.199 55.000 0.00 0.00 0.00 3.61
8786 15257 0.035458 GCGCCTATGTATCCTGCCTT 59.965 55.000 0.00 0.00 0.00 4.35
8787 15258 0.833834 AGCGCCTATGTATCCTGCCT 60.834 55.000 2.29 0.00 0.00 4.75
8788 15259 0.671781 CAGCGCCTATGTATCCTGCC 60.672 60.000 2.29 0.00 0.00 4.85
8789 15260 0.318441 TCAGCGCCTATGTATCCTGC 59.682 55.000 2.29 0.00 0.00 4.85
8790 15261 1.671261 GCTCAGCGCCTATGTATCCTG 60.671 57.143 2.29 0.00 0.00 3.86
8791 15262 0.605589 GCTCAGCGCCTATGTATCCT 59.394 55.000 2.29 0.00 0.00 3.24
8792 15263 3.129792 GCTCAGCGCCTATGTATCC 57.870 57.895 2.29 0.00 0.00 2.59
8805 15276 2.974148 TGGTGTTGCTGCGCTCAG 60.974 61.111 9.73 0.00 43.16 3.35
8806 15277 3.279116 GTGGTGTTGCTGCGCTCA 61.279 61.111 9.73 3.52 0.00 4.26
8807 15278 3.279116 TGTGGTGTTGCTGCGCTC 61.279 61.111 9.73 0.28 0.00 5.03
8808 15279 3.585990 GTGTGGTGTTGCTGCGCT 61.586 61.111 9.73 0.00 0.00 5.92
8809 15280 4.629115 GGTGTGGTGTTGCTGCGC 62.629 66.667 0.00 0.00 0.00 6.09
8810 15281 1.568612 CTAGGTGTGGTGTTGCTGCG 61.569 60.000 0.00 0.00 0.00 5.18
8811 15282 1.856265 GCTAGGTGTGGTGTTGCTGC 61.856 60.000 0.00 0.00 0.00 5.25
8812 15283 0.534877 TGCTAGGTGTGGTGTTGCTG 60.535 55.000 0.00 0.00 0.00 4.41
8813 15284 0.535102 GTGCTAGGTGTGGTGTTGCT 60.535 55.000 0.00 0.00 0.00 3.91
8814 15285 0.535102 AGTGCTAGGTGTGGTGTTGC 60.535 55.000 0.00 0.00 0.00 4.17
8815 15286 2.224185 TGTAGTGCTAGGTGTGGTGTTG 60.224 50.000 0.00 0.00 0.00 3.33
8816 15287 2.043992 TGTAGTGCTAGGTGTGGTGTT 58.956 47.619 0.00 0.00 0.00 3.32
8817 15288 1.712056 TGTAGTGCTAGGTGTGGTGT 58.288 50.000 0.00 0.00 0.00 4.16
8818 15289 2.233676 TCATGTAGTGCTAGGTGTGGTG 59.766 50.000 0.00 0.00 0.00 4.17
8819 15290 2.497675 CTCATGTAGTGCTAGGTGTGGT 59.502 50.000 0.00 0.00 0.00 4.16
8820 15291 2.739932 GCTCATGTAGTGCTAGGTGTGG 60.740 54.545 0.00 0.00 34.02 4.17
8821 15292 2.544685 GCTCATGTAGTGCTAGGTGTG 58.455 52.381 0.00 0.00 34.02 3.82
8822 15293 1.482593 GGCTCATGTAGTGCTAGGTGT 59.517 52.381 0.00 0.00 36.95 4.16
8823 15294 1.482182 TGGCTCATGTAGTGCTAGGTG 59.518 52.381 0.00 0.00 36.95 4.00
8824 15295 1.482593 GTGGCTCATGTAGTGCTAGGT 59.517 52.381 0.00 0.00 36.95 3.08
8825 15296 1.202580 GGTGGCTCATGTAGTGCTAGG 60.203 57.143 0.00 0.00 36.95 3.02
8826 15297 1.536922 CGGTGGCTCATGTAGTGCTAG 60.537 57.143 0.00 0.00 36.95 3.42
8827 15298 0.459899 CGGTGGCTCATGTAGTGCTA 59.540 55.000 0.00 0.00 36.95 3.49
8828 15299 1.219124 CGGTGGCTCATGTAGTGCT 59.781 57.895 0.00 0.00 36.95 4.40
8829 15300 1.815421 CCGGTGGCTCATGTAGTGC 60.815 63.158 0.00 0.00 36.03 4.40
8830 15301 1.153369 CCCGGTGGCTCATGTAGTG 60.153 63.158 0.00 0.00 0.00 2.74
8831 15302 2.367202 CCCCGGTGGCTCATGTAGT 61.367 63.158 0.00 0.00 0.00 2.73
8832 15303 2.505982 CCCCGGTGGCTCATGTAG 59.494 66.667 0.00 0.00 0.00 2.74
8833 15304 3.087253 CCCCCGGTGGCTCATGTA 61.087 66.667 0.00 0.00 0.00 2.29
8846 15317 3.961414 TTCACGGTTGAGGCCCCC 61.961 66.667 0.00 0.00 31.71 5.40
8847 15318 2.671963 GTTCACGGTTGAGGCCCC 60.672 66.667 0.00 0.00 31.71 5.80
8848 15319 2.112297 TGTTCACGGTTGAGGCCC 59.888 61.111 0.00 0.00 31.71 5.80
8849 15320 2.604174 CGTGTTCACGGTTGAGGCC 61.604 63.158 16.17 0.00 31.71 5.19
8850 15321 2.935955 CGTGTTCACGGTTGAGGC 59.064 61.111 16.17 0.00 31.71 4.70
8851 15322 2.604174 GGCGTGTTCACGGTTGAGG 61.604 63.158 23.27 0.00 31.71 3.86
8852 15323 1.885388 TGGCGTGTTCACGGTTGAG 60.885 57.895 23.27 0.00 31.71 3.02
8853 15324 2.174969 GTGGCGTGTTCACGGTTGA 61.175 57.895 23.27 0.00 0.00 3.18
8854 15325 2.326550 GTGGCGTGTTCACGGTTG 59.673 61.111 23.27 0.19 0.00 3.77
8855 15326 2.898343 GGTGGCGTGTTCACGGTT 60.898 61.111 23.27 0.00 36.09 4.44
8867 15338 1.355066 CTTCTTCTCTTCGCGGTGGC 61.355 60.000 6.13 0.00 0.00 5.01
8868 15339 1.355066 GCTTCTTCTCTTCGCGGTGG 61.355 60.000 6.13 0.00 0.00 4.61
8869 15340 0.389166 AGCTTCTTCTCTTCGCGGTG 60.389 55.000 6.13 0.00 0.00 4.94
8870 15341 1.135344 GTAGCTTCTTCTCTTCGCGGT 60.135 52.381 6.13 0.00 0.00 5.68
8871 15342 1.135373 TGTAGCTTCTTCTCTTCGCGG 60.135 52.381 6.13 0.00 0.00 6.46
8872 15343 2.264109 TGTAGCTTCTTCTCTTCGCG 57.736 50.000 0.00 0.00 0.00 5.87
8873 15344 5.401079 GTCATATGTAGCTTCTTCTCTTCGC 59.599 44.000 1.90 0.00 0.00 4.70
8874 15345 5.623264 CGTCATATGTAGCTTCTTCTCTTCG 59.377 44.000 1.90 0.00 0.00 3.79
8875 15346 5.401079 GCGTCATATGTAGCTTCTTCTCTTC 59.599 44.000 14.68 0.00 0.00 2.87
8876 15347 5.163509 TGCGTCATATGTAGCTTCTTCTCTT 60.164 40.000 19.86 0.00 0.00 2.85
8877 15348 4.339530 TGCGTCATATGTAGCTTCTTCTCT 59.660 41.667 19.86 0.00 0.00 3.10
8878 15349 4.442733 GTGCGTCATATGTAGCTTCTTCTC 59.557 45.833 19.86 5.09 0.00 2.87
8879 15350 4.363999 GTGCGTCATATGTAGCTTCTTCT 58.636 43.478 19.86 0.00 0.00 2.85
8880 15351 3.491267 GGTGCGTCATATGTAGCTTCTTC 59.509 47.826 19.86 9.53 0.00 2.87
8881 15352 3.458189 GGTGCGTCATATGTAGCTTCTT 58.542 45.455 19.86 0.00 0.00 2.52
8882 15353 2.543861 CGGTGCGTCATATGTAGCTTCT 60.544 50.000 19.86 0.00 0.00 2.85
8883 15354 1.787155 CGGTGCGTCATATGTAGCTTC 59.213 52.381 19.86 14.43 0.00 3.86
8884 15355 1.136305 ACGGTGCGTCATATGTAGCTT 59.864 47.619 19.86 5.57 33.69 3.74
8885 15356 0.744874 ACGGTGCGTCATATGTAGCT 59.255 50.000 19.86 0.00 33.69 3.32
8886 15357 0.852777 CACGGTGCGTCATATGTAGC 59.147 55.000 14.95 14.95 38.32 3.58
8887 15358 1.487482 CCACGGTGCGTCATATGTAG 58.513 55.000 1.68 0.00 38.32 2.74
8888 15359 0.103390 CCCACGGTGCGTCATATGTA 59.897 55.000 1.68 0.00 38.32 2.29
8889 15360 1.153449 CCCACGGTGCGTCATATGT 60.153 57.895 1.68 0.00 38.32 2.29
8890 15361 2.534019 GCCCACGGTGCGTCATATG 61.534 63.158 1.68 0.00 38.32 1.78
8891 15362 2.203015 GCCCACGGTGCGTCATAT 60.203 61.111 1.68 0.00 38.32 1.78
8892 15363 3.365291 GAGCCCACGGTGCGTCATA 62.365 63.158 1.68 0.00 38.32 2.15
8893 15364 4.760047 GAGCCCACGGTGCGTCAT 62.760 66.667 1.68 0.00 38.32 3.06
8915 15386 2.125106 CCTTCCTGTAGGCACCGC 60.125 66.667 0.00 0.00 34.44 5.68
8916 15387 0.899720 TAACCTTCCTGTAGGCACCG 59.100 55.000 0.00 0.00 38.99 4.94
8917 15388 1.405121 CGTAACCTTCCTGTAGGCACC 60.405 57.143 0.00 0.00 38.99 5.01
8918 15389 1.547372 TCGTAACCTTCCTGTAGGCAC 59.453 52.381 0.00 0.00 38.99 5.01
8919 15390 1.547372 GTCGTAACCTTCCTGTAGGCA 59.453 52.381 0.00 0.00 38.99 4.75
8920 15391 1.547372 TGTCGTAACCTTCCTGTAGGC 59.453 52.381 0.00 0.00 38.99 3.93
8921 15392 2.094338 GGTGTCGTAACCTTCCTGTAGG 60.094 54.545 2.53 0.00 41.31 3.18
8922 15393 2.415090 CGGTGTCGTAACCTTCCTGTAG 60.415 54.545 7.51 0.00 38.14 2.74
8923 15394 1.541147 CGGTGTCGTAACCTTCCTGTA 59.459 52.381 7.51 0.00 38.14 2.74
8924 15395 0.316204 CGGTGTCGTAACCTTCCTGT 59.684 55.000 7.51 0.00 38.14 4.00
8925 15396 0.599558 TCGGTGTCGTAACCTTCCTG 59.400 55.000 7.51 0.00 38.14 3.86
8926 15397 1.271656 CTTCGGTGTCGTAACCTTCCT 59.728 52.381 7.51 0.00 38.14 3.36
8927 15398 1.706443 CTTCGGTGTCGTAACCTTCC 58.294 55.000 7.51 0.00 38.14 3.46
8928 15399 1.066136 GCTTCGGTGTCGTAACCTTC 58.934 55.000 7.51 0.00 38.14 3.46
8929 15400 0.665369 CGCTTCGGTGTCGTAACCTT 60.665 55.000 7.51 0.00 38.14 3.50
8930 15401 1.080974 CGCTTCGGTGTCGTAACCT 60.081 57.895 7.51 0.00 38.14 3.50
8931 15402 1.339946 GACGCTTCGGTGTCGTAACC 61.340 60.000 0.00 0.00 44.02 2.85
8932 15403 2.057183 GACGCTTCGGTGTCGTAAC 58.943 57.895 0.00 0.00 44.02 2.50
8933 15404 4.539152 GACGCTTCGGTGTCGTAA 57.461 55.556 0.00 0.00 44.02 3.18
8957 15428 3.866582 CTGATCCCTGGGTCGGGC 61.867 72.222 13.56 0.00 44.30 6.13
8958 15429 2.041922 TCTGATCCCTGGGTCGGG 60.042 66.667 13.56 7.09 46.13 5.14
8959 15430 0.978146 AACTCTGATCCCTGGGTCGG 60.978 60.000 13.56 14.12 0.00 4.79
8960 15431 0.905357 AAACTCTGATCCCTGGGTCG 59.095 55.000 13.56 6.70 0.00 4.79
8961 15432 1.210722 GGAAACTCTGATCCCTGGGTC 59.789 57.143 13.56 10.24 0.00 4.46
8962 15433 1.290134 GGAAACTCTGATCCCTGGGT 58.710 55.000 13.56 0.00 0.00 4.51
8968 15439 0.981277 TCCGGGGGAAACTCTGATCC 60.981 60.000 0.00 0.00 40.93 3.36
8969 15440 0.466124 CTCCGGGGGAAACTCTGATC 59.534 60.000 0.00 0.00 40.93 2.92
8970 15441 1.627297 GCTCCGGGGGAAACTCTGAT 61.627 60.000 1.90 0.00 40.93 2.90
8971 15442 2.291043 GCTCCGGGGGAAACTCTGA 61.291 63.158 1.90 0.00 40.93 3.27
8972 15443 2.124507 TTGCTCCGGGGGAAACTCTG 62.125 60.000 5.47 0.00 36.73 3.35
8973 15444 1.846124 TTGCTCCGGGGGAAACTCT 60.846 57.895 5.47 0.00 0.00 3.24
8974 15445 1.674651 GTTGCTCCGGGGGAAACTC 60.675 63.158 11.00 0.00 0.00 3.01
8975 15446 2.434774 GTTGCTCCGGGGGAAACT 59.565 61.111 11.00 0.00 0.00 2.66
8976 15447 2.114411 TGTTGCTCCGGGGGAAAC 59.886 61.111 11.00 11.15 0.00 2.78
8977 15448 2.114411 GTGTTGCTCCGGGGGAAA 59.886 61.111 11.00 0.00 0.00 3.13
8978 15449 4.323477 CGTGTTGCTCCGGGGGAA 62.323 66.667 3.12 3.12 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.