Multiple sequence alignment - TraesCS1D01G121200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G121200 chr1D 100.000 4131 0 0 1 4131 121135443 121139573 0.000000e+00 7629.0
1 TraesCS1D01G121200 chr1D 100.000 3865 0 0 4612 8476 121140054 121143918 0.000000e+00 7138.0
2 TraesCS1D01G121200 chr1D 88.602 1202 135 2 995 2195 120534193 120535393 0.000000e+00 1459.0
3 TraesCS1D01G121200 chr1D 83.058 484 61 16 5257 5727 120537131 120537606 3.660000e-113 420.0
4 TraesCS1D01G121200 chr1D 85.924 341 34 4 8148 8474 373078345 373078685 1.350000e-92 351.0
5 TraesCS1D01G121200 chr1D 88.306 248 27 2 4612 4857 100462090 100461843 6.430000e-76 296.0
6 TraesCS1D01G121200 chr1D 87.952 249 28 2 4612 4858 199421316 199421564 8.320000e-75 292.0
7 TraesCS1D01G121200 chr1D 78.678 469 65 17 3659 4123 120536361 120536798 6.480000e-71 279.0
8 TraesCS1D01G121200 chr1B 96.537 3841 106 16 304 4131 183870104 183873930 0.000000e+00 6331.0
9 TraesCS1D01G121200 chr1B 94.753 1944 48 12 4612 6551 183873956 183875849 0.000000e+00 2976.0
10 TraesCS1D01G121200 chr1B 95.554 1192 38 6 6756 7939 183877362 183878546 0.000000e+00 1893.0
11 TraesCS1D01G121200 chr1B 88.602 1202 135 2 995 2195 183479636 183480836 0.000000e+00 1459.0
12 TraesCS1D01G121200 chr1B 80.247 729 105 30 5257 5964 183482966 183483676 5.870000e-141 512.0
13 TraesCS1D01G121200 chr1B 83.969 393 45 7 8090 8476 183878673 183879053 2.250000e-95 361.0
14 TraesCS1D01G121200 chr1B 95.909 220 5 3 6538 6754 183876982 183877200 3.760000e-93 353.0
15 TraesCS1D01G121200 chr1B 77.848 474 63 21 3659 4123 183482158 183482598 1.090000e-63 255.0
16 TraesCS1D01G121200 chr1B 76.627 338 55 15 8146 8469 301365085 301364758 1.890000e-36 165.0
17 TraesCS1D01G121200 chr1B 100.000 52 0 0 215 266 183870052 183870103 7.000000e-16 97.1
18 TraesCS1D01G121200 chr1B 95.455 44 2 0 7935 7978 183878528 183878571 4.240000e-08 71.3
19 TraesCS1D01G121200 chr1A 95.693 2136 64 16 138 2260 132783582 132785702 0.000000e+00 3410.0
20 TraesCS1D01G121200 chr1A 93.886 1423 63 13 4913 6325 132787953 132789361 0.000000e+00 2124.0
21 TraesCS1D01G121200 chr1A 91.052 1531 79 31 6491 7990 132789825 132791328 0.000000e+00 2015.0
22 TraesCS1D01G121200 chr1A 87.812 1280 152 4 918 2195 132480987 132482264 0.000000e+00 1496.0
23 TraesCS1D01G121200 chr1A 95.244 778 24 7 3366 4131 132787077 132787853 0.000000e+00 1219.0
24 TraesCS1D01G121200 chr1A 89.708 719 58 8 2580 3294 132786012 132786718 0.000000e+00 904.0
25 TraesCS1D01G121200 chr1A 80.560 679 107 20 5302 5965 132484362 132485030 4.570000e-137 499.0
26 TraesCS1D01G121200 chr1A 87.826 345 27 4 8146 8476 499925625 499925282 2.870000e-104 390.0
27 TraesCS1D01G121200 chr1A 78.298 470 65 20 3659 4123 132483513 132483950 1.400000e-67 268.0
28 TraesCS1D01G121200 chr1A 90.132 152 12 3 6315 6465 132789682 132789831 2.410000e-45 195.0
29 TraesCS1D01G121200 chr1A 97.895 95 2 0 4854 4948 132787864 132787958 1.890000e-36 165.0
30 TraesCS1D01G121200 chr1A 89.216 102 7 2 2292 2389 132785703 132785804 3.210000e-24 124.0
31 TraesCS1D01G121200 chr2A 88.372 344 26 4 8147 8476 721476721 721477064 1.330000e-107 401.0
32 TraesCS1D01G121200 chrUn 87.861 346 28 5 8145 8476 69195697 69196042 2.220000e-105 394.0
33 TraesCS1D01G121200 chr2D 87.572 346 29 4 8145 8476 586480521 586480866 1.030000e-103 388.0
34 TraesCS1D01G121200 chr2D 88.485 330 25 3 8160 8476 586597716 586598045 3.710000e-103 387.0
35 TraesCS1D01G121200 chr2D 88.571 245 24 4 4612 4853 74146866 74147109 2.310000e-75 294.0
36 TraesCS1D01G121200 chr2D 88.843 242 24 3 4618 4857 627516684 627516444 2.310000e-75 294.0
37 TraesCS1D01G121200 chr5B 86.819 349 32 5 8141 8476 22088675 22089022 2.230000e-100 377.0
38 TraesCS1D01G121200 chr5A 86.297 343 33 6 8146 8474 597720024 597720366 2.250000e-95 361.0
39 TraesCS1D01G121200 chr5A 88.710 248 26 2 4612 4857 535518749 535518502 1.380000e-77 302.0
40 TraesCS1D01G121200 chr7A 85.549 346 35 4 8146 8476 200602212 200602557 1.750000e-91 348.0
41 TraesCS1D01G121200 chr7B 85.507 345 35 4 8145 8476 604664628 604664970 6.300000e-91 346.0
42 TraesCS1D01G121200 chr4D 85.303 347 34 9 8145 8476 475967244 475966900 8.150000e-90 342.0
43 TraesCS1D01G121200 chr3B 85.088 342 37 5 8146 8474 59090534 59090194 3.790000e-88 337.0
44 TraesCS1D01G121200 chr4A 87.952 249 27 3 4612 4857 211380233 211380481 2.990000e-74 291.0
45 TraesCS1D01G121200 chr4A 87.903 248 27 3 4612 4857 286747830 286747584 1.080000e-73 289.0
46 TraesCS1D01G121200 chr3A 88.750 240 24 3 4621 4858 419388670 419388432 2.990000e-74 291.0
47 TraesCS1D01G121200 chr3A 84.921 126 15 3 1 124 623063443 623063566 3.210000e-24 124.0
48 TraesCS1D01G121200 chr7D 83.453 139 15 5 1 138 558165142 558165011 1.160000e-23 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G121200 chr1D 121135443 121143918 8475 False 7383.500000 7629 100.000000 1 8476 2 chr1D.!!$F4 8475
1 TraesCS1D01G121200 chr1D 120534193 120537606 3413 False 719.333333 1459 83.446000 995 5727 3 chr1D.!!$F3 4732
2 TraesCS1D01G121200 chr1B 183870052 183879053 9001 False 1726.057143 6331 94.596714 215 8476 7 chr1B.!!$F2 8261
3 TraesCS1D01G121200 chr1B 183479636 183483676 4040 False 742.000000 1459 82.232333 995 5964 3 chr1B.!!$F1 4969
4 TraesCS1D01G121200 chr1A 132783582 132791328 7746 False 1269.500000 3410 92.853250 138 7990 8 chr1A.!!$F2 7852
5 TraesCS1D01G121200 chr1A 132480987 132485030 4043 False 754.333333 1496 82.223333 918 5965 3 chr1A.!!$F1 5047

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.032130 ACATGAGCGAACAGTCACGT 59.968 50.000 0.00 0.0 0.00 4.49 F
63 64 0.388649 ATGAGCGAACAGTCACGTCC 60.389 55.000 0.00 0.0 0.00 4.79 F
275 276 0.392461 TTCGAGCATTAGGCCCACAC 60.392 55.000 0.00 0.0 46.50 3.82 F
1275 1288 0.613260 CCTTCCCATTCCGTGTCTCA 59.387 55.000 0.00 0.0 0.00 3.27 F
1950 1963 0.834687 TAGAACGTGTGAAGGGGCCT 60.835 55.000 0.84 0.0 0.00 5.19 F
2877 3017 1.059913 ACTTGCCTAGTGTGCTTCCT 58.940 50.000 0.00 0.0 35.19 3.36 F
3057 3198 0.107654 GGCCTTGTCGGAATGTAGCT 60.108 55.000 0.00 0.0 33.16 3.32 F
3343 4389 1.976915 ACCCCTTTACCCCCTAGTTC 58.023 55.000 0.00 0.0 0.00 3.01 F
3716 5014 3.031736 ACCTAACTACATGCAGATCGGT 58.968 45.455 0.00 0.0 0.00 4.69 F
3835 5147 3.880490 TGCAATACCGTGTTCAGTTTTCT 59.120 39.130 0.00 0.0 0.00 2.52 F
5166 6596 5.221843 TGGTGGTAATAAAGCAGTTCTCTGT 60.222 40.000 0.00 0.0 43.05 3.41 F
6692 9633 1.890876 TGACATTGGGGTGAAGAACG 58.109 50.000 0.00 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1107 1120 0.247814 CGCCAAAGCAGACAATAGCG 60.248 55.000 0.00 0.0 39.83 4.26 R
1128 1141 0.672091 TGCCGATGAAACGCTGCTTA 60.672 50.000 0.00 0.0 0.00 3.09 R
1950 1963 3.507162 TCTGACAATGCCTTTTCCAGA 57.493 42.857 0.00 0.0 0.00 3.86 R
2696 2835 0.746659 AAGAGGGCACACAAAGTTGC 59.253 50.000 0.00 0.0 0.00 4.17 R
3024 3165 0.890996 AAGGCCACTGTAGCAAGCAC 60.891 55.000 5.01 0.0 0.00 4.40 R
4618 5930 2.864343 GCACAAATCTAATACGCGGAGT 59.136 45.455 12.47 2.6 0.00 3.85 R
4839 6153 3.013648 TCCTATACACCCTCCAGTCCTTT 59.986 47.826 0.00 0.0 0.00 3.11 R
5096 6515 3.838565 TGGGGAAAATCAAGTGCTTACA 58.161 40.909 0.00 0.0 0.00 2.41 R
5730 7171 5.437946 TGTAAACCATATAATGCACCGGAA 58.562 37.500 9.46 0.0 0.00 4.30 R
5786 7227 5.072741 TGCAGAGGAGCAAAGTTAAAGAAT 58.927 37.500 0.00 0.0 42.46 2.40 R
6713 9654 1.036707 TTTCCAAGGCAAAGAACCCG 58.963 50.000 0.00 0.0 0.00 5.28 R
7999 11148 0.036577 CCAGTGCTTCTGCTGTAGCT 60.037 55.000 19.95 0.0 42.38 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.984194 CCGAGGGGATGCATCAAA 57.016 55.556 27.25 0.00 34.06 2.69
21 22 2.408333 CCGAGGGGATGCATCAAAC 58.592 57.895 27.25 16.28 34.06 2.93
22 23 0.394216 CCGAGGGGATGCATCAAACA 60.394 55.000 27.25 0.00 34.06 2.83
23 24 1.019673 CGAGGGGATGCATCAAACAG 58.980 55.000 27.25 11.90 0.00 3.16
24 25 1.407299 CGAGGGGATGCATCAAACAGA 60.407 52.381 27.25 0.00 0.00 3.41
25 26 2.019984 GAGGGGATGCATCAAACAGAC 58.980 52.381 27.25 8.54 0.00 3.51
26 27 0.734889 GGGGATGCATCAAACAGACG 59.265 55.000 27.25 0.00 0.00 4.18
27 28 0.099436 GGGATGCATCAAACAGACGC 59.901 55.000 27.25 7.11 35.63 5.19
28 29 0.247814 GGATGCATCAAACAGACGCG 60.248 55.000 27.25 3.53 38.54 6.01
29 30 0.721154 GATGCATCAAACAGACGCGA 59.279 50.000 21.92 0.00 38.54 5.87
30 31 1.328680 GATGCATCAAACAGACGCGAT 59.671 47.619 21.92 0.00 38.54 4.58
31 32 0.443478 TGCATCAAACAGACGCGATG 59.557 50.000 15.93 14.20 38.54 3.84
32 33 0.721154 GCATCAAACAGACGCGATGA 59.279 50.000 15.93 7.50 37.97 2.92
33 34 1.328680 GCATCAAACAGACGCGATGAT 59.671 47.619 15.93 9.55 37.97 2.45
34 35 2.223112 GCATCAAACAGACGCGATGATT 60.223 45.455 15.93 9.49 37.97 2.57
35 36 3.728864 GCATCAAACAGACGCGATGATTT 60.729 43.478 15.93 11.09 37.97 2.17
36 37 3.722555 TCAAACAGACGCGATGATTTC 57.277 42.857 15.93 0.00 0.00 2.17
49 50 4.970472 GATGATTTCGAGAGACATGAGC 57.030 45.455 0.00 0.00 41.84 4.26
50 51 2.802256 TGATTTCGAGAGACATGAGCG 58.198 47.619 0.00 0.00 41.84 5.03
51 52 2.423538 TGATTTCGAGAGACATGAGCGA 59.576 45.455 0.00 0.00 41.84 4.93
52 53 3.119495 TGATTTCGAGAGACATGAGCGAA 60.119 43.478 0.00 4.37 41.84 4.70
53 54 2.264109 TTCGAGAGACATGAGCGAAC 57.736 50.000 0.00 0.00 41.84 3.95
54 55 1.165270 TCGAGAGACATGAGCGAACA 58.835 50.000 0.00 0.00 33.31 3.18
55 56 1.131315 TCGAGAGACATGAGCGAACAG 59.869 52.381 0.00 0.00 33.31 3.16
56 57 1.135546 CGAGAGACATGAGCGAACAGT 60.136 52.381 0.00 0.00 0.00 3.55
57 58 2.525055 GAGAGACATGAGCGAACAGTC 58.475 52.381 0.00 0.00 0.00 3.51
58 59 1.889170 AGAGACATGAGCGAACAGTCA 59.111 47.619 0.00 0.00 0.00 3.41
59 60 1.989165 GAGACATGAGCGAACAGTCAC 59.011 52.381 0.00 0.00 0.00 3.67
60 61 0.710567 GACATGAGCGAACAGTCACG 59.289 55.000 0.00 0.00 0.00 4.35
61 62 0.032130 ACATGAGCGAACAGTCACGT 59.968 50.000 0.00 0.00 0.00 4.49
62 63 0.710567 CATGAGCGAACAGTCACGTC 59.289 55.000 0.00 0.00 0.00 4.34
63 64 0.388649 ATGAGCGAACAGTCACGTCC 60.389 55.000 0.00 0.00 0.00 4.79
64 65 1.733399 GAGCGAACAGTCACGTCCC 60.733 63.158 0.00 0.00 0.00 4.46
65 66 2.143594 GAGCGAACAGTCACGTCCCT 62.144 60.000 0.00 0.00 0.00 4.20
66 67 1.733399 GCGAACAGTCACGTCCCTC 60.733 63.158 0.00 0.00 0.00 4.30
67 68 1.442184 CGAACAGTCACGTCCCTCG 60.442 63.158 0.00 0.00 46.00 4.63
80 81 2.125310 CCTCGTGCATGGCGGTTA 60.125 61.111 5.98 0.00 0.00 2.85
81 82 2.173669 CCTCGTGCATGGCGGTTAG 61.174 63.158 5.98 0.00 0.00 2.34
82 83 2.125310 TCGTGCATGGCGGTTAGG 60.125 61.111 5.98 0.00 0.00 2.69
83 84 2.125310 CGTGCATGGCGGTTAGGA 60.125 61.111 0.00 0.00 0.00 2.94
84 85 1.743623 CGTGCATGGCGGTTAGGAA 60.744 57.895 0.00 0.00 0.00 3.36
85 86 1.095228 CGTGCATGGCGGTTAGGAAT 61.095 55.000 0.00 0.00 0.00 3.01
86 87 1.808512 CGTGCATGGCGGTTAGGAATA 60.809 52.381 0.00 0.00 0.00 1.75
87 88 1.873591 GTGCATGGCGGTTAGGAATAG 59.126 52.381 0.00 0.00 0.00 1.73
88 89 1.488812 TGCATGGCGGTTAGGAATAGT 59.511 47.619 0.00 0.00 0.00 2.12
89 90 1.873591 GCATGGCGGTTAGGAATAGTG 59.126 52.381 0.00 0.00 0.00 2.74
90 91 2.484770 GCATGGCGGTTAGGAATAGTGA 60.485 50.000 0.00 0.00 0.00 3.41
91 92 3.804036 CATGGCGGTTAGGAATAGTGAA 58.196 45.455 0.00 0.00 0.00 3.18
92 93 3.536956 TGGCGGTTAGGAATAGTGAAG 57.463 47.619 0.00 0.00 0.00 3.02
93 94 3.101437 TGGCGGTTAGGAATAGTGAAGA 58.899 45.455 0.00 0.00 0.00 2.87
94 95 3.709653 TGGCGGTTAGGAATAGTGAAGAT 59.290 43.478 0.00 0.00 0.00 2.40
95 96 4.163458 TGGCGGTTAGGAATAGTGAAGATT 59.837 41.667 0.00 0.00 0.00 2.40
96 97 4.750598 GGCGGTTAGGAATAGTGAAGATTC 59.249 45.833 0.00 0.00 33.34 2.52
97 98 5.453480 GGCGGTTAGGAATAGTGAAGATTCT 60.453 44.000 0.00 0.00 34.36 2.40
98 99 6.049790 GCGGTTAGGAATAGTGAAGATTCTT 58.950 40.000 0.00 0.00 34.36 2.52
99 100 6.201234 GCGGTTAGGAATAGTGAAGATTCTTC 59.799 42.308 17.76 17.76 34.36 2.87
100 101 6.418226 CGGTTAGGAATAGTGAAGATTCTTCG 59.582 42.308 18.95 1.89 34.36 3.79
101 102 7.266400 GGTTAGGAATAGTGAAGATTCTTCGT 58.734 38.462 18.95 12.43 34.36 3.85
102 103 8.411683 GGTTAGGAATAGTGAAGATTCTTCGTA 58.588 37.037 18.95 13.92 34.36 3.43
103 104 9.798994 GTTAGGAATAGTGAAGATTCTTCGTAA 57.201 33.333 18.95 8.80 34.36 3.18
109 110 9.817809 AATAGTGAAGATTCTTCGTAATTAGCA 57.182 29.630 18.95 0.00 0.00 3.49
110 111 7.527084 AGTGAAGATTCTTCGTAATTAGCAC 57.473 36.000 18.95 10.31 0.00 4.40
111 112 7.097192 AGTGAAGATTCTTCGTAATTAGCACA 58.903 34.615 18.95 0.00 0.00 4.57
112 113 7.766278 AGTGAAGATTCTTCGTAATTAGCACAT 59.234 33.333 18.95 0.81 0.00 3.21
113 114 7.848051 GTGAAGATTCTTCGTAATTAGCACATG 59.152 37.037 18.95 0.00 0.00 3.21
114 115 6.851222 AGATTCTTCGTAATTAGCACATGG 57.149 37.500 0.00 0.00 0.00 3.66
115 116 5.760253 AGATTCTTCGTAATTAGCACATGGG 59.240 40.000 0.00 0.00 0.00 4.00
116 117 4.481368 TCTTCGTAATTAGCACATGGGT 57.519 40.909 0.00 0.00 0.00 4.51
117 118 4.839121 TCTTCGTAATTAGCACATGGGTT 58.161 39.130 0.00 0.00 0.00 4.11
118 119 5.979993 TCTTCGTAATTAGCACATGGGTTA 58.020 37.500 0.00 0.00 0.00 2.85
119 120 6.408035 TCTTCGTAATTAGCACATGGGTTAA 58.592 36.000 6.73 6.73 0.00 2.01
120 121 7.051623 TCTTCGTAATTAGCACATGGGTTAAT 58.948 34.615 10.95 10.95 0.00 1.40
121 122 7.554835 TCTTCGTAATTAGCACATGGGTTAATT 59.445 33.333 26.51 26.51 37.71 1.40
122 123 8.734218 TTCGTAATTAGCACATGGGTTAATTA 57.266 30.769 24.82 24.82 36.19 1.40
123 124 8.734218 TCGTAATTAGCACATGGGTTAATTAA 57.266 30.769 28.18 16.96 37.81 1.40
124 125 9.344772 TCGTAATTAGCACATGGGTTAATTAAT 57.655 29.630 28.18 13.24 37.81 1.40
125 126 9.959749 CGTAATTAGCACATGGGTTAATTAATT 57.040 29.630 28.18 14.34 37.81 1.40
168 169 0.593773 AAAACGCGCGCTCAAACAAT 60.594 45.000 32.58 3.21 0.00 2.71
208 209 9.627123 TTTTTCTTAGATGGAAGAAGAAACTGA 57.373 29.630 8.19 0.00 44.64 3.41
209 210 8.608844 TTTCTTAGATGGAAGAAGAAACTGAC 57.391 34.615 5.21 0.00 44.22 3.51
210 211 7.546250 TCTTAGATGGAAGAAGAAACTGACT 57.454 36.000 0.00 0.00 32.46 3.41
275 276 0.392461 TTCGAGCATTAGGCCCACAC 60.392 55.000 0.00 0.00 46.50 3.82
277 278 1.369091 CGAGCATTAGGCCCACACAC 61.369 60.000 0.00 0.00 46.50 3.82
279 280 1.674322 GCATTAGGCCCACACACGT 60.674 57.895 0.00 0.00 36.11 4.49
291 292 4.191544 CCCACACACGTCAATTATCTCAT 58.808 43.478 0.00 0.00 0.00 2.90
299 300 4.572389 ACGTCAATTATCTCATTGGTCTGC 59.428 41.667 0.00 0.00 35.22 4.26
361 366 1.228769 TAGGTGCACAGACCGACCT 60.229 57.895 20.43 6.31 41.35 3.85
362 367 1.532604 TAGGTGCACAGACCGACCTG 61.533 60.000 20.43 1.02 41.35 4.00
363 368 2.357517 GTGCACAGACCGACCTGG 60.358 66.667 13.17 0.00 46.41 4.45
364 369 4.314440 TGCACAGACCGACCTGGC 62.314 66.667 8.49 8.79 43.94 4.85
451 456 3.827898 CACCCGACCTCCTCTCGC 61.828 72.222 0.00 0.00 0.00 5.03
452 457 4.049817 ACCCGACCTCCTCTCGCT 62.050 66.667 0.00 0.00 0.00 4.93
525 535 0.807496 GGCTACCAGAAGCAAAGCTG 59.193 55.000 0.00 0.00 44.64 4.24
585 595 2.595238 GGGTACGACTCAGTCCCATAT 58.405 52.381 0.00 0.00 38.15 1.78
587 597 3.488363 GGTACGACTCAGTCCCATATCT 58.512 50.000 0.00 0.00 0.00 1.98
642 652 0.891373 ATATCGATCTCCCCGTGCTG 59.109 55.000 0.00 0.00 0.00 4.41
685 695 9.770097 TTCACCATTAGATCATGTTTCTAGATC 57.230 33.333 0.00 0.00 38.70 2.75
692 702 3.785486 TCATGTTTCTAGATCAGGCGTG 58.215 45.455 0.00 0.00 0.00 5.34
695 705 4.371855 TGTTTCTAGATCAGGCGTGTAG 57.628 45.455 6.26 1.48 0.00 2.74
698 708 4.371855 TTCTAGATCAGGCGTGTAGTTG 57.628 45.455 6.26 0.00 0.00 3.16
709 720 2.157085 GCGTGTAGTTGCCTGTTACTTC 59.843 50.000 0.00 0.00 0.00 3.01
715 726 3.537580 AGTTGCCTGTTACTTCGTTGAA 58.462 40.909 0.00 0.00 0.00 2.69
993 1006 4.041198 TGACCGGAAGATAAAAAGGACAGT 59.959 41.667 9.46 0.00 0.00 3.55
1128 1141 1.672881 GCTATTGTCTGCTTTGGCGAT 59.327 47.619 0.00 0.00 42.25 4.58
1275 1288 0.613260 CCTTCCCATTCCGTGTCTCA 59.387 55.000 0.00 0.00 0.00 3.27
1545 1558 1.596603 CGACAGCATTGGCATATGGA 58.403 50.000 4.56 0.00 44.61 3.41
1950 1963 0.834687 TAGAACGTGTGAAGGGGCCT 60.835 55.000 0.84 0.00 0.00 5.19
1982 1995 2.574006 TTGTCAGAAGCTGGCTTGAT 57.426 45.000 12.79 0.00 36.97 2.57
2263 2276 9.932699 TCTTAAATGTGTTGAAATTTTGCATTG 57.067 25.926 0.00 0.00 0.00 2.82
2283 2296 5.848286 TTGTCCCCTATATGCATGAGAAT 57.152 39.130 10.16 0.00 0.00 2.40
2415 2432 9.146984 CATTTTGTCTTTCTATGCATTCATTGT 57.853 29.630 3.54 0.00 34.22 2.71
2479 2496 2.365237 GTACCTCCGCCCCTTCCT 60.365 66.667 0.00 0.00 0.00 3.36
2496 2513 3.587797 TCCTGACTTTAAGTAGGCGTG 57.412 47.619 0.00 0.00 0.00 5.34
2508 2525 4.796038 AGTAGGCGTGTTAGTAATGTGT 57.204 40.909 0.00 0.00 0.00 3.72
2649 2788 3.810373 CCTAGTTGCGTGTTCATTTGAC 58.190 45.455 0.00 0.00 0.00 3.18
2650 2789 2.774439 AGTTGCGTGTTCATTTGACC 57.226 45.000 0.00 0.00 0.00 4.02
2671 2810 4.216902 ACCTGTAAATTTAAGCCAACGACC 59.783 41.667 0.00 0.00 0.00 4.79
2696 2835 4.678509 TTAAGCTCTTACAATTGCACGG 57.321 40.909 5.05 0.00 0.00 4.94
2806 2945 2.594592 GCACGTGGCCCTGTTTCT 60.595 61.111 18.88 0.00 36.11 2.52
2876 3016 3.633361 ACTTGCCTAGTGTGCTTCC 57.367 52.632 0.00 0.00 35.19 3.46
2877 3017 1.059913 ACTTGCCTAGTGTGCTTCCT 58.940 50.000 0.00 0.00 35.19 3.36
2987 3128 4.652822 AGTAGGTTAGGTGGAAAAAGCAG 58.347 43.478 0.00 0.00 0.00 4.24
3018 3159 3.896317 GACCACTCAGTCCACAGTC 57.104 57.895 0.00 0.00 0.00 3.51
3023 3164 1.338337 CACTCAGTCCACAGTCGACTT 59.662 52.381 17.26 4.83 38.54 3.01
3024 3165 1.338337 ACTCAGTCCACAGTCGACTTG 59.662 52.381 17.26 16.58 38.54 3.16
3035 3176 1.068588 AGTCGACTTGTGCTTGCTACA 59.931 47.619 13.58 0.00 0.00 2.74
3057 3198 0.107654 GGCCTTGTCGGAATGTAGCT 60.108 55.000 0.00 0.00 33.16 3.32
3065 3206 5.339008 TGTCGGAATGTAGCTTCAGTTAT 57.661 39.130 0.00 0.00 0.00 1.89
3247 3812 9.775854 ATCTGTGATCTTAATCTCTTGTATTGG 57.224 33.333 0.00 0.00 32.75 3.16
3343 4389 1.976915 ACCCCTTTACCCCCTAGTTC 58.023 55.000 0.00 0.00 0.00 3.01
3597 4643 7.231115 ACTTACACGGTGGGTATTGTTATTTTT 59.769 33.333 13.48 0.00 0.00 1.94
3716 5014 3.031736 ACCTAACTACATGCAGATCGGT 58.968 45.455 0.00 0.00 0.00 4.69
3835 5147 3.880490 TGCAATACCGTGTTCAGTTTTCT 59.120 39.130 0.00 0.00 0.00 2.52
4846 6160 9.740710 AAACTTATATGCAGACTAAAAAGGACT 57.259 29.630 0.00 0.00 0.00 3.85
4960 6303 5.928839 CCCAGATTTGAATGTACCTATCTCG 59.071 44.000 0.00 0.00 0.00 4.04
5163 6593 7.012421 CCTTATGGTGGTAATAAAGCAGTTCTC 59.988 40.741 0.00 0.00 35.94 2.87
5165 6595 5.245531 TGGTGGTAATAAAGCAGTTCTCTG 58.754 41.667 0.00 0.00 43.87 3.35
5166 6596 5.221843 TGGTGGTAATAAAGCAGTTCTCTGT 60.222 40.000 0.00 0.00 43.05 3.41
5168 6598 6.877322 GGTGGTAATAAAGCAGTTCTCTGTTA 59.123 38.462 0.00 0.00 43.05 2.41
5169 6599 7.553044 GGTGGTAATAAAGCAGTTCTCTGTTAT 59.447 37.037 0.00 0.00 43.05 1.89
5170 6600 8.391106 GTGGTAATAAAGCAGTTCTCTGTTATG 58.609 37.037 0.00 0.00 43.05 1.90
5171 6601 8.100791 TGGTAATAAAGCAGTTCTCTGTTATGT 58.899 33.333 0.00 0.00 43.05 2.29
5172 6602 8.947115 GGTAATAAAGCAGTTCTCTGTTATGTT 58.053 33.333 0.00 0.00 43.05 2.71
5276 6706 7.728847 AATTTTTCTTGGGCAAGACAATTAC 57.271 32.000 2.38 0.00 46.13 1.89
5730 7171 8.011844 AGAAGAACTGAAAAAGGTATGCTTTT 57.988 30.769 0.00 0.00 35.77 2.27
5772 7213 7.547722 GGTTTACAGTTTGGTTTTGTTCTCATT 59.452 33.333 0.00 0.00 0.00 2.57
5773 7214 8.931775 GTTTACAGTTTGGTTTTGTTCTCATTT 58.068 29.630 0.00 0.00 0.00 2.32
5775 7216 9.796120 TTACAGTTTGGTTTTGTTCTCATTTAG 57.204 29.630 0.00 0.00 0.00 1.85
5776 7217 7.264947 ACAGTTTGGTTTTGTTCTCATTTAGG 58.735 34.615 0.00 0.00 0.00 2.69
5778 7219 7.763985 CAGTTTGGTTTTGTTCTCATTTAGGTT 59.236 33.333 0.00 0.00 0.00 3.50
5779 7220 7.979537 AGTTTGGTTTTGTTCTCATTTAGGTTC 59.020 33.333 0.00 0.00 0.00 3.62
5780 7221 7.654022 TTGGTTTTGTTCTCATTTAGGTTCT 57.346 32.000 0.00 0.00 0.00 3.01
5781 7222 8.754991 TTGGTTTTGTTCTCATTTAGGTTCTA 57.245 30.769 0.00 0.00 0.00 2.10
5782 7223 8.391075 TGGTTTTGTTCTCATTTAGGTTCTAG 57.609 34.615 0.00 0.00 0.00 2.43
5783 7224 8.215050 TGGTTTTGTTCTCATTTAGGTTCTAGA 58.785 33.333 0.00 0.00 0.00 2.43
5784 7225 9.232473 GGTTTTGTTCTCATTTAGGTTCTAGAT 57.768 33.333 0.00 0.00 0.00 1.98
6035 7492 7.170658 CCACTCTTTGCTTTATCTGCTATAGAC 59.829 40.741 3.21 0.00 38.49 2.59
6152 7610 4.882842 TGCATCTTTGTCAGTAGGTGTA 57.117 40.909 0.00 0.00 0.00 2.90
6387 8176 3.817084 CTGAAGACCATGAAAAGTCTGCA 59.183 43.478 9.41 9.41 44.72 4.41
6440 8229 9.649167 GTCAGTGTATAACTAAGTTATGGTTGT 57.351 33.333 0.00 0.00 38.86 3.32
6557 9494 2.034812 GGTTTCGGTGTGGTTGCAAATA 59.965 45.455 0.00 0.00 0.00 1.40
6692 9633 1.890876 TGACATTGGGGTGAAGAACG 58.109 50.000 0.00 0.00 0.00 3.95
6702 9643 5.081032 TGGGGTGAAGAACGGAATTTTTAT 58.919 37.500 0.00 0.00 0.00 1.40
6713 9654 8.616076 AGAACGGAATTTTTATGAGATGACATC 58.384 33.333 7.39 7.39 0.00 3.06
6754 9695 7.040892 GGAAAAACTACCTACTTTTGGGTACTG 60.041 40.741 0.00 0.00 37.07 2.74
6999 10112 4.022935 TGTTGGAATAGCAGCAACTTTCTG 60.023 41.667 0.00 0.00 34.79 3.02
7383 10500 3.244976 GAACAACAATCAAATGGAGCCG 58.755 45.455 0.00 0.00 0.00 5.52
7384 10501 2.513753 ACAACAATCAAATGGAGCCGA 58.486 42.857 0.00 0.00 0.00 5.54
7385 10502 3.091545 ACAACAATCAAATGGAGCCGAT 58.908 40.909 0.00 0.00 0.00 4.18
7483 10603 2.859165 TCCCAGGCTTAAGAACTGTG 57.141 50.000 19.77 12.64 0.00 3.66
7512 10632 7.071572 TCAGAGGAGATTTTATGTCCATGATCA 59.928 37.037 0.00 0.00 44.73 2.92
7517 10637 7.500227 GGAGATTTTATGTCCATGATCAGTTGA 59.500 37.037 0.09 0.00 42.05 3.18
7642 10762 2.821991 AGACGTCTTTGTCCCTTCAG 57.178 50.000 13.58 0.00 39.77 3.02
7865 10985 6.560253 TTTCTTGAATTCCTGTAAGCTGAC 57.440 37.500 2.27 0.00 0.00 3.51
7892 11041 6.030228 GTCTTATTGCTAATTGTGTGCTTCC 58.970 40.000 0.00 0.00 0.00 3.46
7931 11080 0.107017 AGCCTCCCCATCACGATTTG 60.107 55.000 0.00 0.00 0.00 2.32
7932 11081 0.107214 GCCTCCCCATCACGATTTGA 60.107 55.000 0.00 0.00 39.11 2.69
7933 11082 1.959042 CCTCCCCATCACGATTTGAG 58.041 55.000 0.00 0.00 37.77 3.02
7934 11083 1.303309 CTCCCCATCACGATTTGAGC 58.697 55.000 0.00 0.00 37.77 4.26
7935 11084 0.107214 TCCCCATCACGATTTGAGCC 60.107 55.000 0.00 0.00 37.77 4.70
7936 11085 0.394216 CCCCATCACGATTTGAGCCA 60.394 55.000 0.00 0.00 37.77 4.75
7937 11086 1.683943 CCCATCACGATTTGAGCCAT 58.316 50.000 0.00 0.00 37.77 4.40
7938 11087 1.605710 CCCATCACGATTTGAGCCATC 59.394 52.381 0.00 0.00 37.77 3.51
7939 11088 2.291365 CCATCACGATTTGAGCCATCA 58.709 47.619 0.00 0.00 37.77 3.07
7940 11089 2.032550 CCATCACGATTTGAGCCATCAC 59.967 50.000 0.00 0.00 37.77 3.06
7941 11090 1.358877 TCACGATTTGAGCCATCACG 58.641 50.000 0.00 0.00 34.35 4.35
7942 11091 1.067213 TCACGATTTGAGCCATCACGA 60.067 47.619 0.00 0.00 34.35 4.35
7943 11092 1.935873 CACGATTTGAGCCATCACGAT 59.064 47.619 0.00 0.00 34.35 3.73
7944 11093 2.352651 CACGATTTGAGCCATCACGATT 59.647 45.455 0.00 0.00 34.35 3.34
7997 11146 5.269505 TGTGTCCAACAATTGTTTTAGGG 57.730 39.130 21.10 18.09 35.24 3.53
7998 11147 4.055360 GTGTCCAACAATTGTTTTAGGGC 58.945 43.478 21.10 19.86 35.83 5.19
7999 11148 3.706594 TGTCCAACAATTGTTTTAGGGCA 59.293 39.130 22.70 22.70 35.83 5.36
8000 11149 4.202202 TGTCCAACAATTGTTTTAGGGCAG 60.202 41.667 22.70 10.50 35.83 4.85
8001 11150 3.066380 CCAACAATTGTTTTAGGGCAGC 58.934 45.455 21.10 0.00 35.83 5.25
8002 11151 3.244181 CCAACAATTGTTTTAGGGCAGCT 60.244 43.478 21.10 0.00 35.83 4.24
8003 11152 4.021544 CCAACAATTGTTTTAGGGCAGCTA 60.022 41.667 21.10 0.00 35.83 3.32
8004 11153 4.783764 ACAATTGTTTTAGGGCAGCTAC 57.216 40.909 4.92 0.00 0.00 3.58
8005 11154 4.148838 ACAATTGTTTTAGGGCAGCTACA 58.851 39.130 4.92 0.00 0.00 2.74
8006 11155 4.218417 ACAATTGTTTTAGGGCAGCTACAG 59.782 41.667 4.92 0.00 0.00 2.74
8007 11156 1.821216 TGTTTTAGGGCAGCTACAGC 58.179 50.000 0.00 0.00 42.49 4.40
8008 11157 1.073125 TGTTTTAGGGCAGCTACAGCA 59.927 47.619 3.70 0.00 45.16 4.41
8009 11158 1.740025 GTTTTAGGGCAGCTACAGCAG 59.260 52.381 3.70 0.00 45.16 4.24
8010 11159 1.275666 TTTAGGGCAGCTACAGCAGA 58.724 50.000 3.70 0.00 45.16 4.26
8011 11160 1.275666 TTAGGGCAGCTACAGCAGAA 58.724 50.000 3.70 0.00 45.16 3.02
8012 11161 0.826715 TAGGGCAGCTACAGCAGAAG 59.173 55.000 3.70 0.00 45.16 2.85
8013 11162 2.111582 GGGCAGCTACAGCAGAAGC 61.112 63.158 3.70 2.15 45.16 3.86
8014 11163 1.376424 GGCAGCTACAGCAGAAGCA 60.376 57.895 3.70 0.00 45.49 3.91
8015 11164 1.642952 GGCAGCTACAGCAGAAGCAC 61.643 60.000 3.70 0.00 45.49 4.40
8016 11165 0.673022 GCAGCTACAGCAGAAGCACT 60.673 55.000 3.70 0.00 45.49 4.40
8018 11167 0.036577 AGCTACAGCAGAAGCACTGG 60.037 55.000 3.70 0.89 45.82 4.00
8019 11168 1.642952 GCTACAGCAGAAGCACTGGC 61.643 60.000 11.72 4.01 45.82 4.85
8021 11170 4.619021 GCTACAGCAGAAGCACTGGCTA 62.619 54.545 11.72 0.00 45.54 3.93
8022 11171 5.855596 GCTACAGCAGAAGCACTGGCTAT 62.856 52.174 11.72 3.40 45.54 2.97
8034 11183 3.624777 CACTGGCTATGTTGAAAGGGAT 58.375 45.455 0.00 0.00 0.00 3.85
8049 11198 5.426509 TGAAAGGGATTTGAGCATCTCTAGA 59.573 40.000 0.00 0.00 32.29 2.43
8051 11200 5.549742 AGGGATTTGAGCATCTCTAGAAG 57.450 43.478 0.00 0.00 31.64 2.85
8052 11201 5.215069 AGGGATTTGAGCATCTCTAGAAGA 58.785 41.667 0.00 0.00 31.64 2.87
8053 11202 5.845614 AGGGATTTGAGCATCTCTAGAAGAT 59.154 40.000 0.00 0.00 46.04 2.40
8054 11203 6.014327 AGGGATTTGAGCATCTCTAGAAGATC 60.014 42.308 0.00 0.00 43.13 2.75
8055 11204 6.014327 GGGATTTGAGCATCTCTAGAAGATCT 60.014 42.308 0.00 0.00 43.13 2.75
8056 11205 6.869913 GGATTTGAGCATCTCTAGAAGATCTG 59.130 42.308 0.00 0.00 43.13 2.90
8057 11206 4.852134 TGAGCATCTCTAGAAGATCTGC 57.148 45.455 0.00 0.00 43.13 4.26
8058 11207 4.472496 TGAGCATCTCTAGAAGATCTGCT 58.528 43.478 8.68 8.68 43.13 4.24
8059 11208 5.629125 TGAGCATCTCTAGAAGATCTGCTA 58.371 41.667 10.20 10.20 43.13 3.49
8060 11209 6.247676 TGAGCATCTCTAGAAGATCTGCTAT 58.752 40.000 11.07 0.00 43.13 2.97
8061 11210 7.401246 TGAGCATCTCTAGAAGATCTGCTATA 58.599 38.462 11.07 3.32 43.13 1.31
8062 11211 7.887495 TGAGCATCTCTAGAAGATCTGCTATAA 59.113 37.037 11.07 2.26 43.13 0.98
8063 11212 8.827832 AGCATCTCTAGAAGATCTGCTATAAT 57.172 34.615 11.07 2.88 43.13 1.28
8064 11213 8.689061 AGCATCTCTAGAAGATCTGCTATAATG 58.311 37.037 11.07 14.31 43.13 1.90
8065 11214 7.436080 GCATCTCTAGAAGATCTGCTATAATGC 59.564 40.741 23.23 23.23 43.13 3.56
8066 11215 7.403312 TCTCTAGAAGATCTGCTATAATGCC 57.597 40.000 11.07 0.00 0.00 4.40
8110 11312 3.699894 CTGTGGCCGAGCAGACCT 61.700 66.667 14.35 0.00 34.87 3.85
8111 11313 3.655810 CTGTGGCCGAGCAGACCTC 62.656 68.421 14.35 0.00 34.87 3.85
8118 11320 3.188965 GAGCAGACCTCGCGTAGT 58.811 61.111 5.77 4.45 0.00 2.73
8119 11321 1.226435 GAGCAGACCTCGCGTAGTG 60.226 63.158 5.77 0.00 40.84 2.74
8121 11323 1.514443 GCAGACCTCGCGTAGTGAC 60.514 63.158 5.77 0.00 44.70 3.67
8122 11324 1.136984 CAGACCTCGCGTAGTGACC 59.863 63.158 5.77 0.00 44.70 4.02
8124 11326 3.392595 GACCTCGCGTAGTGACCCG 62.393 68.421 5.77 0.00 44.70 5.28
8125 11327 3.437795 CCTCGCGTAGTGACCCGT 61.438 66.667 5.77 0.00 44.70 5.28
8126 11328 2.108514 CCTCGCGTAGTGACCCGTA 61.109 63.158 5.77 0.00 44.70 4.02
8127 11329 1.647545 CCTCGCGTAGTGACCCGTAA 61.648 60.000 5.77 0.00 44.70 3.18
8128 11330 0.168788 CTCGCGTAGTGACCCGTAAA 59.831 55.000 5.77 0.00 44.70 2.01
8129 11331 0.595588 TCGCGTAGTGACCCGTAAAA 59.404 50.000 5.77 0.00 44.70 1.52
8131 11333 1.994779 CGCGTAGTGACCCGTAAAAAT 59.005 47.619 0.00 0.00 43.07 1.82
8135 11338 3.423907 CGTAGTGACCCGTAAAAATGCAC 60.424 47.826 0.00 0.00 0.00 4.57
8140 11343 3.570125 TGACCCGTAAAAATGCACATTCA 59.430 39.130 0.00 0.00 0.00 2.57
8143 11346 4.038642 ACCCGTAAAAATGCACATTCACTT 59.961 37.500 0.00 0.00 0.00 3.16
8150 11353 6.956299 AAAATGCACATTCACTTGATAAGC 57.044 33.333 0.00 0.00 0.00 3.09
8161 11364 7.667043 TTCACTTGATAAGCGAATTTACAGT 57.333 32.000 0.00 0.00 0.00 3.55
8166 11369 8.391106 ACTTGATAAGCGAATTTACAGTGATTC 58.609 33.333 0.00 0.00 0.00 2.52
8167 11370 7.246674 TGATAAGCGAATTTACAGTGATTCC 57.753 36.000 0.00 0.00 0.00 3.01
8170 11373 3.617263 AGCGAATTTACAGTGATTCCGAC 59.383 43.478 0.00 0.00 0.00 4.79
8177 11380 6.869315 TTTACAGTGATTCCGACAATTGAA 57.131 33.333 13.59 0.00 0.00 2.69
8209 11412 3.734776 ACAATAAAACCTAGTTCGCGC 57.265 42.857 0.00 0.00 0.00 6.86
8211 11414 2.000429 ATAAAACCTAGTTCGCGCGT 58.000 45.000 30.98 13.76 0.00 6.01
8215 11418 1.063031 AACCTAGTTCGCGCGTAAAC 58.937 50.000 30.98 26.11 0.00 2.01
8220 11423 2.013286 AGTTCGCGCGTAAACAAAAG 57.987 45.000 30.98 0.00 0.00 2.27
8221 11424 0.424553 GTTCGCGCGTAAACAAAAGC 59.575 50.000 30.98 5.76 0.00 3.51
8222 11425 0.027716 TTCGCGCGTAAACAAAAGCA 59.972 45.000 30.98 1.78 0.00 3.91
8223 11426 0.236187 TCGCGCGTAAACAAAAGCAT 59.764 45.000 30.98 0.00 0.00 3.79
8224 11427 1.459975 TCGCGCGTAAACAAAAGCATA 59.540 42.857 30.98 1.00 0.00 3.14
8225 11428 1.831812 CGCGCGTAAACAAAAGCATAG 59.168 47.619 24.19 0.00 0.00 2.23
8253 11456 6.815089 TGTATGACAAATGCAAAAGGACTTT 58.185 32.000 0.00 0.00 0.00 2.66
8263 11466 5.669477 TGCAAAAGGACTTTATGCAAAAGT 58.331 33.333 19.96 19.96 40.24 2.66
8264 11467 5.523188 TGCAAAAGGACTTTATGCAAAAGTG 59.477 36.000 22.97 13.24 40.24 3.16
8269 11472 4.213482 AGGACTTTATGCAAAAGTGACGAC 59.787 41.667 22.97 12.86 40.27 4.34
8294 11497 3.733337 GTCCATCATTATCTTGGTCGCT 58.267 45.455 0.00 0.00 0.00 4.93
8301 11504 4.394920 TCATTATCTTGGTCGCTTTTCACC 59.605 41.667 0.00 0.00 0.00 4.02
8302 11505 1.534729 ATCTTGGTCGCTTTTCACCC 58.465 50.000 0.00 0.00 0.00 4.61
8303 11506 0.882927 TCTTGGTCGCTTTTCACCCG 60.883 55.000 0.00 0.00 0.00 5.28
8304 11507 1.153127 TTGGTCGCTTTTCACCCGT 60.153 52.632 0.00 0.00 0.00 5.28
8305 11508 1.161563 TTGGTCGCTTTTCACCCGTC 61.162 55.000 0.00 0.00 0.00 4.79
8306 11509 1.595929 GGTCGCTTTTCACCCGTCA 60.596 57.895 0.00 0.00 0.00 4.35
8307 11510 0.953960 GGTCGCTTTTCACCCGTCAT 60.954 55.000 0.00 0.00 0.00 3.06
8308 11511 0.442699 GTCGCTTTTCACCCGTCATC 59.557 55.000 0.00 0.00 0.00 2.92
8309 11512 0.034198 TCGCTTTTCACCCGTCATCA 59.966 50.000 0.00 0.00 0.00 3.07
8310 11513 0.165944 CGCTTTTCACCCGTCATCAC 59.834 55.000 0.00 0.00 0.00 3.06
8322 11525 1.913262 TCATCACTCCGCACCACCT 60.913 57.895 0.00 0.00 0.00 4.00
8334 11537 0.323633 CACCACCTCCATCAATGCCA 60.324 55.000 0.00 0.00 0.00 4.92
8338 11541 0.548031 ACCTCCATCAATGCCATCGT 59.452 50.000 0.00 0.00 0.00 3.73
8339 11542 1.064463 ACCTCCATCAATGCCATCGTT 60.064 47.619 0.00 0.00 0.00 3.85
8340 11543 1.335810 CCTCCATCAATGCCATCGTTG 59.664 52.381 0.00 0.00 39.87 4.10
8359 11562 2.281070 CCCTGAATCCATCGCCGG 60.281 66.667 0.00 0.00 0.00 6.13
8365 11568 1.776034 GAATCCATCGCCGGCACTTC 61.776 60.000 28.98 14.51 0.00 3.01
8366 11569 2.535485 AATCCATCGCCGGCACTTCA 62.535 55.000 28.98 7.09 0.00 3.02
8367 11570 2.535485 ATCCATCGCCGGCACTTCAA 62.535 55.000 28.98 7.09 0.00 2.69
8369 11572 2.034879 CATCGCCGGCACTTCAACT 61.035 57.895 28.98 0.00 0.00 3.16
8370 11573 1.302511 ATCGCCGGCACTTCAACTT 60.303 52.632 28.98 0.00 0.00 2.66
8371 11574 1.298859 ATCGCCGGCACTTCAACTTC 61.299 55.000 28.98 0.00 0.00 3.01
8372 11575 2.556287 GCCGGCACTTCAACTTCG 59.444 61.111 24.80 0.00 0.00 3.79
8373 11576 2.966309 GCCGGCACTTCAACTTCGG 61.966 63.158 24.80 0.00 40.33 4.30
8416 11623 1.377594 TGAATGCATCAGCGGCACT 60.378 52.632 0.00 0.00 45.23 4.40
8460 11667 4.368808 CGCCGGCACTGAAACACG 62.369 66.667 28.98 0.98 0.00 4.49
8464 11671 2.331451 GGCACTGAAACACGCACC 59.669 61.111 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.103398 GTTTGATGCATCCCCTCGGG 61.103 60.000 23.67 0.00 46.11 5.14
3 4 0.394216 TGTTTGATGCATCCCCTCGG 60.394 55.000 23.67 0.00 0.00 4.63
4 5 1.019673 CTGTTTGATGCATCCCCTCG 58.980 55.000 23.67 6.16 0.00 4.63
5 6 2.019984 GTCTGTTTGATGCATCCCCTC 58.980 52.381 23.67 11.77 0.00 4.30
6 7 1.679944 CGTCTGTTTGATGCATCCCCT 60.680 52.381 23.67 0.00 0.00 4.79
7 8 0.734889 CGTCTGTTTGATGCATCCCC 59.265 55.000 23.67 11.66 0.00 4.81
14 15 3.663464 AATCATCGCGTCTGTTTGATG 57.337 42.857 5.77 0.00 39.59 3.07
15 16 3.242091 CGAAATCATCGCGTCTGTTTGAT 60.242 43.478 5.77 4.01 45.89 2.57
16 17 2.092055 CGAAATCATCGCGTCTGTTTGA 59.908 45.455 5.77 1.66 45.89 2.69
17 18 2.421523 CGAAATCATCGCGTCTGTTTG 58.578 47.619 5.77 0.00 45.89 2.93
18 19 2.787723 CGAAATCATCGCGTCTGTTT 57.212 45.000 5.77 3.98 45.89 2.83
28 29 3.424861 CGCTCATGTCTCTCGAAATCATC 59.575 47.826 0.00 0.00 0.00 2.92
29 30 3.067320 TCGCTCATGTCTCTCGAAATCAT 59.933 43.478 0.00 0.00 0.00 2.45
30 31 2.423538 TCGCTCATGTCTCTCGAAATCA 59.576 45.455 0.00 0.00 0.00 2.57
31 32 3.071786 TCGCTCATGTCTCTCGAAATC 57.928 47.619 0.00 0.00 0.00 2.17
32 33 3.182967 GTTCGCTCATGTCTCTCGAAAT 58.817 45.455 10.05 0.00 40.20 2.17
33 34 2.030274 TGTTCGCTCATGTCTCTCGAAA 60.030 45.455 10.05 0.00 40.20 3.46
34 35 1.539827 TGTTCGCTCATGTCTCTCGAA 59.460 47.619 0.00 0.00 36.91 3.71
35 36 1.131315 CTGTTCGCTCATGTCTCTCGA 59.869 52.381 0.00 0.00 0.00 4.04
36 37 1.135546 ACTGTTCGCTCATGTCTCTCG 60.136 52.381 0.00 0.00 0.00 4.04
37 38 2.095008 TGACTGTTCGCTCATGTCTCTC 60.095 50.000 0.00 0.00 0.00 3.20
38 39 1.889170 TGACTGTTCGCTCATGTCTCT 59.111 47.619 0.00 0.00 0.00 3.10
39 40 1.989165 GTGACTGTTCGCTCATGTCTC 59.011 52.381 0.00 0.00 0.00 3.36
40 41 1.667177 CGTGACTGTTCGCTCATGTCT 60.667 52.381 0.00 0.00 0.00 3.41
41 42 0.710567 CGTGACTGTTCGCTCATGTC 59.289 55.000 0.00 0.00 0.00 3.06
42 43 0.032130 ACGTGACTGTTCGCTCATGT 59.968 50.000 0.00 0.00 32.77 3.21
43 44 0.710567 GACGTGACTGTTCGCTCATG 59.289 55.000 0.00 0.00 0.00 3.07
44 45 0.388649 GGACGTGACTGTTCGCTCAT 60.389 55.000 0.00 0.00 0.00 2.90
45 46 1.007734 GGACGTGACTGTTCGCTCA 60.008 57.895 0.00 0.00 0.00 4.26
46 47 1.733399 GGGACGTGACTGTTCGCTC 60.733 63.158 0.00 4.37 0.00 5.03
47 48 2.143594 GAGGGACGTGACTGTTCGCT 62.144 60.000 0.00 0.00 0.00 4.93
48 49 1.733399 GAGGGACGTGACTGTTCGC 60.733 63.158 0.00 0.00 0.00 4.70
49 50 1.442184 CGAGGGACGTGACTGTTCG 60.442 63.158 0.00 5.16 37.22 3.95
50 51 4.554163 CGAGGGACGTGACTGTTC 57.446 61.111 0.00 0.00 37.22 3.18
62 63 3.673956 TAACCGCCATGCACGAGGG 62.674 63.158 9.73 2.73 0.00 4.30
63 64 2.125310 TAACCGCCATGCACGAGG 60.125 61.111 7.82 4.11 0.00 4.63
64 65 2.173669 CCTAACCGCCATGCACGAG 61.174 63.158 7.82 1.76 0.00 4.18
65 66 2.125310 CCTAACCGCCATGCACGA 60.125 61.111 7.82 0.00 0.00 4.35
66 67 1.095228 ATTCCTAACCGCCATGCACG 61.095 55.000 0.00 0.00 0.00 5.34
67 68 1.873591 CTATTCCTAACCGCCATGCAC 59.126 52.381 0.00 0.00 0.00 4.57
68 69 1.488812 ACTATTCCTAACCGCCATGCA 59.511 47.619 0.00 0.00 0.00 3.96
69 70 1.873591 CACTATTCCTAACCGCCATGC 59.126 52.381 0.00 0.00 0.00 4.06
70 71 3.469008 TCACTATTCCTAACCGCCATG 57.531 47.619 0.00 0.00 0.00 3.66
71 72 3.709653 TCTTCACTATTCCTAACCGCCAT 59.290 43.478 0.00 0.00 0.00 4.40
72 73 3.101437 TCTTCACTATTCCTAACCGCCA 58.899 45.455 0.00 0.00 0.00 5.69
73 74 3.814005 TCTTCACTATTCCTAACCGCC 57.186 47.619 0.00 0.00 0.00 6.13
74 75 5.602628 AGAATCTTCACTATTCCTAACCGC 58.397 41.667 0.00 0.00 34.50 5.68
75 76 6.418226 CGAAGAATCTTCACTATTCCTAACCG 59.582 42.308 21.29 0.82 34.50 4.44
76 77 7.266400 ACGAAGAATCTTCACTATTCCTAACC 58.734 38.462 21.29 0.00 34.50 2.85
77 78 9.798994 TTACGAAGAATCTTCACTATTCCTAAC 57.201 33.333 21.29 0.00 34.50 2.34
83 84 9.817809 TGCTAATTACGAAGAATCTTCACTATT 57.182 29.630 21.29 16.93 0.00 1.73
84 85 9.250624 GTGCTAATTACGAAGAATCTTCACTAT 57.749 33.333 21.29 8.83 0.00 2.12
85 86 8.248253 TGTGCTAATTACGAAGAATCTTCACTA 58.752 33.333 21.29 8.24 0.00 2.74
86 87 7.097192 TGTGCTAATTACGAAGAATCTTCACT 58.903 34.615 21.29 9.14 0.00 3.41
87 88 7.290857 TGTGCTAATTACGAAGAATCTTCAC 57.709 36.000 21.29 10.37 0.00 3.18
88 89 7.011389 CCATGTGCTAATTACGAAGAATCTTCA 59.989 37.037 21.29 4.07 0.00 3.02
89 90 7.348201 CCATGTGCTAATTACGAAGAATCTTC 58.652 38.462 12.74 12.74 0.00 2.87
90 91 6.260936 CCCATGTGCTAATTACGAAGAATCTT 59.739 38.462 0.00 0.00 0.00 2.40
91 92 5.760253 CCCATGTGCTAATTACGAAGAATCT 59.240 40.000 0.00 0.00 0.00 2.40
92 93 5.527582 ACCCATGTGCTAATTACGAAGAATC 59.472 40.000 0.00 0.00 0.00 2.52
93 94 5.437060 ACCCATGTGCTAATTACGAAGAAT 58.563 37.500 0.00 0.00 0.00 2.40
94 95 4.839121 ACCCATGTGCTAATTACGAAGAA 58.161 39.130 0.00 0.00 0.00 2.52
95 96 4.481368 ACCCATGTGCTAATTACGAAGA 57.519 40.909 0.00 0.00 0.00 2.87
96 97 6.671614 TTAACCCATGTGCTAATTACGAAG 57.328 37.500 0.00 0.00 0.00 3.79
97 98 7.633193 AATTAACCCATGTGCTAATTACGAA 57.367 32.000 0.00 0.00 0.00 3.85
98 99 8.734218 TTAATTAACCCATGTGCTAATTACGA 57.266 30.769 4.03 0.00 30.01 3.43
99 100 9.959749 AATTAATTAACCCATGTGCTAATTACG 57.040 29.630 0.00 0.00 30.01 3.18
121 122 9.871238 GAGGACACTAGTGTTGAGATTTAATTA 57.129 33.333 28.49 0.00 45.05 1.40
122 123 7.824779 GGAGGACACTAGTGTTGAGATTTAATT 59.175 37.037 28.49 1.58 45.05 1.40
123 124 7.038302 TGGAGGACACTAGTGTTGAGATTTAAT 60.038 37.037 28.49 1.79 45.05 1.40
124 125 6.269077 TGGAGGACACTAGTGTTGAGATTTAA 59.731 38.462 28.49 7.15 45.05 1.52
125 126 5.778241 TGGAGGACACTAGTGTTGAGATTTA 59.222 40.000 28.49 9.01 45.05 1.40
126 127 4.593206 TGGAGGACACTAGTGTTGAGATTT 59.407 41.667 28.49 10.05 45.05 2.17
127 128 4.160329 TGGAGGACACTAGTGTTGAGATT 58.840 43.478 28.49 11.34 45.05 2.40
128 129 3.779444 TGGAGGACACTAGTGTTGAGAT 58.221 45.455 28.49 13.33 45.05 2.75
129 130 3.238788 TGGAGGACACTAGTGTTGAGA 57.761 47.619 28.49 10.23 45.05 3.27
130 131 4.336889 TTTGGAGGACACTAGTGTTGAG 57.663 45.455 28.49 2.59 45.05 3.02
131 132 4.448210 GTTTTGGAGGACACTAGTGTTGA 58.552 43.478 28.49 9.22 45.05 3.18
132 133 3.247648 CGTTTTGGAGGACACTAGTGTTG 59.752 47.826 28.49 3.46 45.05 3.33
133 134 3.463944 CGTTTTGGAGGACACTAGTGTT 58.536 45.455 28.49 14.80 45.05 3.32
135 136 1.798813 GCGTTTTGGAGGACACTAGTG 59.201 52.381 21.44 21.44 0.00 2.74
136 137 1.604693 CGCGTTTTGGAGGACACTAGT 60.605 52.381 0.00 0.00 0.00 2.57
275 276 5.503031 GCAGACCAATGAGATAATTGACGTG 60.503 44.000 0.00 0.00 39.46 4.49
277 278 4.024556 GGCAGACCAATGAGATAATTGACG 60.025 45.833 0.00 0.00 39.46 4.35
279 280 4.464008 GGGCAGACCAATGAGATAATTGA 58.536 43.478 0.00 0.00 39.46 2.57
363 368 4.660938 AACCCTGGGTTCGCCAGC 62.661 66.667 25.42 0.00 43.05 4.85
364 369 2.115266 AAACCCTGGGTTCGCCAG 59.885 61.111 30.33 0.00 46.20 4.85
451 456 1.999071 CTTGGCGAGGAGGAGACGAG 61.999 65.000 0.00 0.00 0.00 4.18
452 457 2.035155 TTGGCGAGGAGGAGACGA 59.965 61.111 0.00 0.00 0.00 4.20
525 535 1.447945 GAGGCCAGAGAAACTTCTGC 58.552 55.000 5.01 0.00 42.58 4.26
532 542 1.302511 GTTGCCGAGGCCAGAGAAA 60.303 57.895 12.05 0.00 41.09 2.52
574 584 1.150135 GGGAGGGAGATATGGGACTGA 59.850 57.143 0.00 0.00 0.00 3.41
585 595 2.203938 AACCAAGCGGGAGGGAGA 60.204 61.111 4.35 0.00 41.15 3.71
587 597 3.702048 CGAACCAAGCGGGAGGGA 61.702 66.667 4.35 0.00 41.15 4.20
620 630 0.452184 CACGGGGAGATCGATATCGG 59.548 60.000 24.12 8.54 40.29 4.18
642 652 0.173481 GAAAAGCCAAAGCGGATCCC 59.827 55.000 6.06 0.00 46.67 3.85
695 705 3.558418 TCTTCAACGAAGTAACAGGCAAC 59.442 43.478 3.81 0.00 45.00 4.17
698 708 6.478588 CATAATCTTCAACGAAGTAACAGGC 58.521 40.000 3.81 0.00 45.00 4.85
709 720 1.665679 ACCGCAGCATAATCTTCAACG 59.334 47.619 0.00 0.00 0.00 4.10
715 726 4.122776 CTCTACAAACCGCAGCATAATCT 58.877 43.478 0.00 0.00 0.00 2.40
993 1006 0.608130 CCACCACACTCATCTCCGAA 59.392 55.000 0.00 0.00 0.00 4.30
1107 1120 0.247814 CGCCAAAGCAGACAATAGCG 60.248 55.000 0.00 0.00 39.83 4.26
1128 1141 0.672091 TGCCGATGAAACGCTGCTTA 60.672 50.000 0.00 0.00 0.00 3.09
1545 1558 5.523588 TCAGGGAGATCAGTCTTGTAGATT 58.476 41.667 0.00 0.00 33.97 2.40
1950 1963 3.507162 TCTGACAATGCCTTTTCCAGA 57.493 42.857 0.00 0.00 0.00 3.86
2262 2275 5.848286 AATTCTCATGCATATAGGGGACA 57.152 39.130 0.00 0.00 0.00 4.02
2310 2323 5.236047 GCTCATGTCCAACAGCTTTCTATAG 59.764 44.000 0.00 0.00 0.00 1.31
2394 2411 5.416639 AGCACAATGAATGCATAGAAAGACA 59.583 36.000 0.00 0.00 45.92 3.41
2415 2432 6.269315 ACAAATGAACAAAACGATGTTAGCA 58.731 32.000 6.11 2.99 43.31 3.49
2479 2496 5.458041 ACTAACACGCCTACTTAAAGTCA 57.542 39.130 0.00 0.00 0.00 3.41
2649 2788 4.670735 CGGTCGTTGGCTTAAATTTACAGG 60.671 45.833 0.00 0.00 0.00 4.00
2650 2789 4.399978 CGGTCGTTGGCTTAAATTTACAG 58.600 43.478 0.00 0.91 0.00 2.74
2696 2835 0.746659 AAGAGGGCACACAAAGTTGC 59.253 50.000 0.00 0.00 0.00 4.17
2963 3104 5.801380 TGCTTTTTCCACCTAACCTACTAG 58.199 41.667 0.00 0.00 0.00 2.57
2979 3120 3.397955 TCCCCTAGGAACTTCTGCTTTTT 59.602 43.478 11.48 0.00 40.08 1.94
3006 3147 1.067060 CACAAGTCGACTGTGGACTGA 59.933 52.381 26.83 0.00 43.66 3.41
3018 3159 1.193203 CACTGTAGCAAGCACAAGTCG 59.807 52.381 0.00 0.00 0.00 4.18
3023 3164 1.600636 GGCCACTGTAGCAAGCACA 60.601 57.895 0.00 0.00 0.00 4.57
3024 3165 0.890996 AAGGCCACTGTAGCAAGCAC 60.891 55.000 5.01 0.00 0.00 4.40
3035 3176 0.981183 TACATTCCGACAAGGCCACT 59.019 50.000 5.01 0.00 40.77 4.00
3065 3206 4.419875 ATCAAACAGATTATGGGGATCCCA 59.580 41.667 32.07 18.30 46.66 4.37
3126 3306 8.811378 GCAAATTTGAGGAACTATATTTCTTGC 58.189 33.333 22.31 5.67 41.55 4.01
3315 3902 3.187942 GGGGTAAAGGGGTAAGAAGAGT 58.812 50.000 0.00 0.00 0.00 3.24
3321 4174 3.141091 ACTAGGGGGTAAAGGGGTAAG 57.859 52.381 0.00 0.00 0.00 2.34
3343 4389 5.807011 GCATAAGGTTTAAAGCCAATGTCAG 59.193 40.000 21.28 6.32 0.00 3.51
3597 4643 5.188555 TGCATTGCATAAGATTGGGGTAAAA 59.811 36.000 7.38 0.00 31.71 1.52
4611 5923 4.825546 TCTAATACGCGGAGTAGAAAGG 57.174 45.455 25.10 0.56 38.94 3.11
4612 5924 6.696148 ACAAATCTAATACGCGGAGTAGAAAG 59.304 38.462 29.91 23.03 38.94 2.62
4613 5925 6.474427 CACAAATCTAATACGCGGAGTAGAAA 59.526 38.462 29.91 11.01 38.94 2.52
4614 5926 5.975344 CACAAATCTAATACGCGGAGTAGAA 59.025 40.000 29.91 15.10 38.94 2.10
4615 5927 5.516996 CACAAATCTAATACGCGGAGTAGA 58.483 41.667 28.63 28.63 38.94 2.59
4616 5928 4.148348 GCACAAATCTAATACGCGGAGTAG 59.852 45.833 19.49 19.49 38.94 2.57
4617 5929 4.046462 GCACAAATCTAATACGCGGAGTA 58.954 43.478 12.47 4.11 40.03 2.59
4618 5930 2.864343 GCACAAATCTAATACGCGGAGT 59.136 45.455 12.47 2.60 0.00 3.85
4619 5931 3.123804 AGCACAAATCTAATACGCGGAG 58.876 45.455 12.47 1.75 0.00 4.63
4620 5932 3.173668 AGCACAAATCTAATACGCGGA 57.826 42.857 12.47 0.00 0.00 5.54
4621 5933 4.506654 ACTTAGCACAAATCTAATACGCGG 59.493 41.667 12.47 0.00 0.00 6.46
4622 5934 5.231357 TGACTTAGCACAAATCTAATACGCG 59.769 40.000 3.53 3.53 0.00 6.01
4828 6142 4.566488 CCTCCAGTCCTTTTTAGTCTGCAT 60.566 45.833 0.00 0.00 0.00 3.96
4832 6146 3.328050 CACCCTCCAGTCCTTTTTAGTCT 59.672 47.826 0.00 0.00 0.00 3.24
4839 6153 3.013648 TCCTATACACCCTCCAGTCCTTT 59.986 47.826 0.00 0.00 0.00 3.11
4846 6160 5.720041 GCATACTAATCCTATACACCCTCCA 59.280 44.000 0.00 0.00 0.00 3.86
4960 6303 8.385858 CGAAGTACTAACTAAGCCAAATAAACC 58.614 37.037 0.00 0.00 33.75 3.27
5096 6515 3.838565 TGGGGAAAATCAAGTGCTTACA 58.161 40.909 0.00 0.00 0.00 2.41
5730 7171 5.437946 TGTAAACCATATAATGCACCGGAA 58.562 37.500 9.46 0.00 0.00 4.30
5774 7215 8.951243 GCAAAGTTAAAGAATCATCTAGAACCT 58.049 33.333 0.00 0.00 33.77 3.50
5775 7216 8.951243 AGCAAAGTTAAAGAATCATCTAGAACC 58.049 33.333 0.00 0.00 33.77 3.62
5776 7217 9.980780 GAGCAAAGTTAAAGAATCATCTAGAAC 57.019 33.333 0.00 0.00 33.77 3.01
5778 7219 8.543774 AGGAGCAAAGTTAAAGAATCATCTAGA 58.456 33.333 0.00 0.00 33.77 2.43
5779 7220 8.729805 AGGAGCAAAGTTAAAGAATCATCTAG 57.270 34.615 0.00 0.00 33.77 2.43
5780 7221 8.543774 AGAGGAGCAAAGTTAAAGAATCATCTA 58.456 33.333 0.00 0.00 33.77 1.98
5781 7222 7.336427 CAGAGGAGCAAAGTTAAAGAATCATCT 59.664 37.037 0.00 0.00 37.57 2.90
5782 7223 7.470900 CAGAGGAGCAAAGTTAAAGAATCATC 58.529 38.462 0.00 0.00 0.00 2.92
5783 7224 6.127786 GCAGAGGAGCAAAGTTAAAGAATCAT 60.128 38.462 0.00 0.00 0.00 2.45
5784 7225 5.182001 GCAGAGGAGCAAAGTTAAAGAATCA 59.818 40.000 0.00 0.00 0.00 2.57
5786 7227 5.072741 TGCAGAGGAGCAAAGTTAAAGAAT 58.927 37.500 0.00 0.00 42.46 2.40
6035 7492 3.718815 GCTAGAATGGGAGGACTTTACG 58.281 50.000 0.00 0.00 0.00 3.18
6333 8122 5.743026 TTGACTGCGTTTTTCACTTATGA 57.257 34.783 0.00 0.00 0.00 2.15
6428 8217 7.514721 TCTTCTACTCCAAACAACCATAACTT 58.485 34.615 0.00 0.00 0.00 2.66
6557 9494 7.280356 ACGCCAATAGGAGTTATCTAACATTT 58.720 34.615 3.15 0.00 46.59 2.32
6692 9633 6.263168 ACCCGATGTCATCTCATAAAAATTCC 59.737 38.462 11.04 0.00 0.00 3.01
6702 9643 3.599343 CAAAGAACCCGATGTCATCTCA 58.401 45.455 11.04 0.00 0.00 3.27
6713 9654 1.036707 TTTCCAAGGCAAAGAACCCG 58.963 50.000 0.00 0.00 0.00 5.28
7383 10500 1.227205 CTGGCTCAGCGGACTCATC 60.227 63.158 0.00 0.00 0.00 2.92
7384 10501 2.898738 CTGGCTCAGCGGACTCAT 59.101 61.111 0.00 0.00 0.00 2.90
7483 10603 6.179906 TGGACATAAAATCTCCTCTGATCC 57.820 41.667 0.00 0.00 0.00 3.36
7512 10632 5.644644 CAAAAAGCACAAGAGAACTCAACT 58.355 37.500 4.64 0.00 0.00 3.16
7642 10762 3.054878 TCGTCAAAGAAAAGACCGCTAC 58.945 45.455 0.00 0.00 0.00 3.58
7865 10985 6.615088 AGCACACAATTAGCAATAAGACAAG 58.385 36.000 0.00 0.00 0.00 3.16
7931 11080 1.372582 TGCTCAAATCGTGATGGCTC 58.627 50.000 0.00 0.00 35.07 4.70
7932 11081 1.945394 GATGCTCAAATCGTGATGGCT 59.055 47.619 0.00 0.00 35.07 4.75
7933 11082 1.945394 AGATGCTCAAATCGTGATGGC 59.055 47.619 0.00 0.00 35.07 4.40
7934 11083 2.547211 GGAGATGCTCAAATCGTGATGG 59.453 50.000 0.00 0.00 35.07 3.51
7935 11084 3.200483 TGGAGATGCTCAAATCGTGATG 58.800 45.455 0.00 0.00 35.07 3.07
7936 11085 3.548745 TGGAGATGCTCAAATCGTGAT 57.451 42.857 0.00 0.00 35.07 3.06
7937 11086 3.002791 GTTGGAGATGCTCAAATCGTGA 58.997 45.455 0.00 0.00 31.08 4.35
7938 11087 2.743664 TGTTGGAGATGCTCAAATCGTG 59.256 45.455 0.00 0.00 31.08 4.35
7939 11088 3.005554 CTGTTGGAGATGCTCAAATCGT 58.994 45.455 0.00 0.00 31.08 3.73
7940 11089 3.264947 TCTGTTGGAGATGCTCAAATCG 58.735 45.455 0.00 0.00 31.08 3.34
7990 11139 1.628340 TCTGCTGTAGCTGCCCTAAAA 59.372 47.619 5.38 0.00 42.66 1.52
7991 11140 1.275666 TCTGCTGTAGCTGCCCTAAA 58.724 50.000 5.38 0.00 42.66 1.85
7992 11141 1.208052 CTTCTGCTGTAGCTGCCCTAA 59.792 52.381 5.38 0.00 42.66 2.69
7993 11142 0.826715 CTTCTGCTGTAGCTGCCCTA 59.173 55.000 5.38 0.00 42.66 3.53
7994 11143 1.601171 CTTCTGCTGTAGCTGCCCT 59.399 57.895 5.38 0.00 42.66 5.19
7995 11144 2.111582 GCTTCTGCTGTAGCTGCCC 61.112 63.158 13.75 0.00 42.66 5.36
7996 11145 1.376424 TGCTTCTGCTGTAGCTGCC 60.376 57.895 19.95 0.00 42.66 4.85
7997 11146 0.673022 AGTGCTTCTGCTGTAGCTGC 60.673 55.000 19.95 13.69 42.66 5.25
7998 11147 1.077123 CAGTGCTTCTGCTGTAGCTG 58.923 55.000 19.95 9.59 42.66 4.24
7999 11148 0.036577 CCAGTGCTTCTGCTGTAGCT 60.037 55.000 19.95 0.00 42.38 3.32
8000 11149 1.642952 GCCAGTGCTTCTGCTGTAGC 61.643 60.000 14.07 14.07 42.38 3.58
8001 11150 2.464682 GCCAGTGCTTCTGCTGTAG 58.535 57.895 4.40 0.00 42.38 2.74
8002 11151 4.701663 GCCAGTGCTTCTGCTGTA 57.298 55.556 4.40 0.00 42.38 2.74
8012 11161 1.474077 CCCTTTCAACATAGCCAGTGC 59.526 52.381 0.00 0.00 37.95 4.40
8013 11162 3.071874 TCCCTTTCAACATAGCCAGTG 57.928 47.619 0.00 0.00 0.00 3.66
8014 11163 4.322057 AATCCCTTTCAACATAGCCAGT 57.678 40.909 0.00 0.00 0.00 4.00
8015 11164 4.706476 TCAAATCCCTTTCAACATAGCCAG 59.294 41.667 0.00 0.00 0.00 4.85
8016 11165 4.671831 TCAAATCCCTTTCAACATAGCCA 58.328 39.130 0.00 0.00 0.00 4.75
8017 11166 4.440663 GCTCAAATCCCTTTCAACATAGCC 60.441 45.833 0.00 0.00 0.00 3.93
8018 11167 4.158394 TGCTCAAATCCCTTTCAACATAGC 59.842 41.667 0.00 0.00 0.00 2.97
8019 11168 5.902613 TGCTCAAATCCCTTTCAACATAG 57.097 39.130 0.00 0.00 0.00 2.23
8020 11169 6.189859 AGATGCTCAAATCCCTTTCAACATA 58.810 36.000 0.00 0.00 0.00 2.29
8021 11170 5.021458 AGATGCTCAAATCCCTTTCAACAT 58.979 37.500 0.00 0.00 0.00 2.71
8022 11171 4.410099 AGATGCTCAAATCCCTTTCAACA 58.590 39.130 0.00 0.00 0.00 3.33
8023 11172 4.704057 AGAGATGCTCAAATCCCTTTCAAC 59.296 41.667 0.00 0.00 32.06 3.18
8024 11173 4.927049 AGAGATGCTCAAATCCCTTTCAA 58.073 39.130 0.00 0.00 32.06 2.69
8034 11183 5.363292 AGCAGATCTTCTAGAGATGCTCAAA 59.637 40.000 10.79 0.00 42.66 2.69
8049 11198 3.307059 GGGTCGGCATTATAGCAGATCTT 60.307 47.826 0.00 0.00 40.64 2.40
8051 11200 2.622436 GGGTCGGCATTATAGCAGATC 58.378 52.381 0.00 0.00 40.64 2.75
8052 11201 1.066858 CGGGTCGGCATTATAGCAGAT 60.067 52.381 0.00 0.00 40.64 2.90
8053 11202 0.317160 CGGGTCGGCATTATAGCAGA 59.683 55.000 0.00 0.00 36.38 4.26
8054 11203 1.291877 GCGGGTCGGCATTATAGCAG 61.292 60.000 0.00 0.00 35.83 4.24
8055 11204 1.301401 GCGGGTCGGCATTATAGCA 60.301 57.895 0.00 0.00 35.83 3.49
8056 11205 0.882927 TTGCGGGTCGGCATTATAGC 60.883 55.000 4.13 0.00 43.52 2.97
8057 11206 1.588674 TTTGCGGGTCGGCATTATAG 58.411 50.000 4.13 0.00 43.52 1.31
8058 11207 2.039818 TTTTGCGGGTCGGCATTATA 57.960 45.000 4.13 0.00 43.52 0.98
8059 11208 1.066908 CATTTTGCGGGTCGGCATTAT 59.933 47.619 4.13 0.00 43.52 1.28
8060 11209 0.453793 CATTTTGCGGGTCGGCATTA 59.546 50.000 4.13 0.00 43.52 1.90
8061 11210 1.215117 CATTTTGCGGGTCGGCATT 59.785 52.632 4.13 0.00 43.52 3.56
8062 11211 2.884367 CATTTTGCGGGTCGGCAT 59.116 55.556 4.13 0.00 43.52 4.40
8063 11212 4.049640 GCATTTTGCGGGTCGGCA 62.050 61.111 0.00 0.00 42.12 5.69
8100 11302 2.023461 CTACGCGAGGTCTGCTCG 59.977 66.667 15.93 0.00 45.93 5.03
8113 11315 2.737783 TGCATTTTTACGGGTCACTACG 59.262 45.455 0.00 0.00 0.00 3.51
8118 11320 3.570125 TGAATGTGCATTTTTACGGGTCA 59.430 39.130 0.00 0.00 0.00 4.02
8119 11321 3.917985 GTGAATGTGCATTTTTACGGGTC 59.082 43.478 0.00 0.00 0.00 4.46
8120 11322 3.572255 AGTGAATGTGCATTTTTACGGGT 59.428 39.130 0.00 0.00 0.00 5.28
8121 11323 4.173036 AGTGAATGTGCATTTTTACGGG 57.827 40.909 0.00 0.00 0.00 5.28
8122 11324 5.218885 TCAAGTGAATGTGCATTTTTACGG 58.781 37.500 0.00 0.00 0.00 4.02
8124 11326 8.375465 GCTTATCAAGTGAATGTGCATTTTTAC 58.625 33.333 0.00 0.00 0.00 2.01
8125 11327 7.273164 CGCTTATCAAGTGAATGTGCATTTTTA 59.727 33.333 0.00 0.00 41.49 1.52
8126 11328 6.089820 CGCTTATCAAGTGAATGTGCATTTTT 59.910 34.615 0.00 0.00 41.49 1.94
8127 11329 5.574055 CGCTTATCAAGTGAATGTGCATTTT 59.426 36.000 0.00 0.00 41.49 1.82
8128 11330 5.097529 CGCTTATCAAGTGAATGTGCATTT 58.902 37.500 0.00 0.00 41.49 2.32
8129 11331 4.395854 TCGCTTATCAAGTGAATGTGCATT 59.604 37.500 0.00 0.00 44.43 3.56
8131 11333 3.333804 TCGCTTATCAAGTGAATGTGCA 58.666 40.909 0.00 0.00 44.43 4.57
8140 11343 7.849804 ATCACTGTAAATTCGCTTATCAAGT 57.150 32.000 0.00 0.00 0.00 3.16
8143 11346 6.019075 CGGAATCACTGTAAATTCGCTTATCA 60.019 38.462 8.24 0.00 33.57 2.15
8150 11353 5.524511 TTGTCGGAATCACTGTAAATTCG 57.475 39.130 8.24 0.00 33.57 3.34
8199 11402 2.841070 TTTGTTTACGCGCGAACTAG 57.159 45.000 39.36 6.47 0.00 2.57
8207 11410 5.585837 CAAAACTATGCTTTTGTTTACGCG 58.414 37.500 3.53 3.53 36.68 6.01
8230 11433 8.863049 CATAAAGTCCTTTTGCATTTGTCATAC 58.137 33.333 0.00 0.00 34.23 2.39
8240 11443 5.523188 CACTTTTGCATAAAGTCCTTTTGCA 59.477 36.000 18.20 17.61 40.79 4.08
8253 11456 1.795872 CGTGGTCGTCACTTTTGCATA 59.204 47.619 9.22 0.00 43.94 3.14
8269 11472 3.808728 ACCAAGATAATGATGGACGTGG 58.191 45.455 0.00 0.00 37.66 4.94
8294 11497 1.606994 CGGAGTGATGACGGGTGAAAA 60.607 52.381 0.00 0.00 0.00 2.29
8301 11504 2.509336 GGTGCGGAGTGATGACGG 60.509 66.667 0.00 0.00 0.00 4.79
8302 11505 2.094659 GTGGTGCGGAGTGATGACG 61.095 63.158 0.00 0.00 0.00 4.35
8303 11506 1.741770 GGTGGTGCGGAGTGATGAC 60.742 63.158 0.00 0.00 0.00 3.06
8304 11507 1.888436 GAGGTGGTGCGGAGTGATGA 61.888 60.000 0.00 0.00 0.00 2.92
8305 11508 1.448540 GAGGTGGTGCGGAGTGATG 60.449 63.158 0.00 0.00 0.00 3.07
8306 11509 2.660064 GGAGGTGGTGCGGAGTGAT 61.660 63.158 0.00 0.00 0.00 3.06
8307 11510 3.311110 GGAGGTGGTGCGGAGTGA 61.311 66.667 0.00 0.00 0.00 3.41
8308 11511 2.859273 GATGGAGGTGGTGCGGAGTG 62.859 65.000 0.00 0.00 0.00 3.51
8309 11512 2.607750 ATGGAGGTGGTGCGGAGT 60.608 61.111 0.00 0.00 0.00 3.85
8310 11513 2.184020 TTGATGGAGGTGGTGCGGAG 62.184 60.000 0.00 0.00 0.00 4.63
8322 11525 0.740149 GCAACGATGGCATTGATGGA 59.260 50.000 21.46 0.00 0.00 3.41
8334 11537 0.552848 ATGGATTCAGGGGCAACGAT 59.447 50.000 0.00 0.00 37.60 3.73
8338 11541 1.453745 GCGATGGATTCAGGGGCAA 60.454 57.895 0.00 0.00 0.00 4.52
8339 11542 2.192979 GCGATGGATTCAGGGGCA 59.807 61.111 0.00 0.00 0.00 5.36
8340 11543 2.595754 GGCGATGGATTCAGGGGC 60.596 66.667 0.00 0.00 0.00 5.80
8359 11562 1.282875 GGTGCCGAAGTTGAAGTGC 59.717 57.895 0.00 0.00 0.00 4.40
8416 11623 1.912731 TCTCATCGGGATTTGGAACCA 59.087 47.619 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.