Multiple sequence alignment - TraesCS1D01G119600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G119600 chr1D 100.000 4540 0 0 1 4540 116452819 116457358 0 8384
1 TraesCS1D01G119600 chr1A 96.288 2775 74 11 883 3645 127352873 127355630 0 4527
2 TraesCS1D01G119600 chr1A 92.014 864 36 17 1 850 127352032 127352876 0 1182
3 TraesCS1D01G119600 chr1B 95.695 1928 42 16 3 1907 178095132 178097041 0 3062
4 TraesCS1D01G119600 chr1B 95.921 1716 48 11 1935 3645 178097036 178098734 0 2761
5 TraesCS1D01G119600 chr1B 95.681 903 37 2 3638 4540 507360465 507361365 0 1450
6 TraesCS1D01G119600 chr2D 98.228 903 16 0 3638 4540 592585632 592584730 0 1580
7 TraesCS1D01G119600 chr4D 97.672 902 21 0 3639 4540 216326611 216325710 0 1550
8 TraesCS1D01G119600 chr7D 96.799 906 26 3 3635 4540 2579189 2580091 0 1509
9 TraesCS1D01G119600 chr4B 96.009 902 33 3 3638 4537 668983543 668984443 0 1463
10 TraesCS1D01G119600 chr4B 95.801 905 35 3 3638 4540 669150528 669149625 0 1458
11 TraesCS1D01G119600 chr4B 95.580 905 37 3 3638 4540 669320509 669319606 0 1447
12 TraesCS1D01G119600 chrUn 95.903 903 36 1 3638 4540 243658008 243658909 0 1461
13 TraesCS1D01G119600 chrUn 95.903 903 36 1 3638 4540 245881693 245882594 0 1461


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G119600 chr1D 116452819 116457358 4539 False 8384.0 8384 100.000 1 4540 1 chr1D.!!$F1 4539
1 TraesCS1D01G119600 chr1A 127352032 127355630 3598 False 2854.5 4527 94.151 1 3645 2 chr1A.!!$F1 3644
2 TraesCS1D01G119600 chr1B 178095132 178098734 3602 False 2911.5 3062 95.808 3 3645 2 chr1B.!!$F2 3642
3 TraesCS1D01G119600 chr1B 507360465 507361365 900 False 1450.0 1450 95.681 3638 4540 1 chr1B.!!$F1 902
4 TraesCS1D01G119600 chr2D 592584730 592585632 902 True 1580.0 1580 98.228 3638 4540 1 chr2D.!!$R1 902
5 TraesCS1D01G119600 chr4D 216325710 216326611 901 True 1550.0 1550 97.672 3639 4540 1 chr4D.!!$R1 901
6 TraesCS1D01G119600 chr7D 2579189 2580091 902 False 1509.0 1509 96.799 3635 4540 1 chr7D.!!$F1 905
7 TraesCS1D01G119600 chr4B 668983543 668984443 900 False 1463.0 1463 96.009 3638 4537 1 chr4B.!!$F1 899
8 TraesCS1D01G119600 chr4B 669149625 669150528 903 True 1458.0 1458 95.801 3638 4540 1 chr4B.!!$R1 902
9 TraesCS1D01G119600 chr4B 669319606 669320509 903 True 1447.0 1447 95.580 3638 4540 1 chr4B.!!$R2 902
10 TraesCS1D01G119600 chrUn 243658008 243658909 901 False 1461.0 1461 95.903 3638 4540 1 chrUn.!!$F1 902
11 TraesCS1D01G119600 chrUn 245881693 245882594 901 False 1461.0 1461 95.903 3638 4540 1 chrUn.!!$F2 902

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 54 0.321564 CTCCACAAATCCACAGCCGA 60.322 55.000 0.00 0.0 0.00 5.54 F
198 203 0.394352 CATCCCGTCTTCTTTGGGGG 60.394 60.000 0.00 0.0 43.50 5.40 F
831 862 2.028839 TGCATTTTTCTCAGGTGGCATG 60.029 45.455 0.00 0.0 0.00 4.06 F
1975 2021 2.034558 GCCTGCAACTAGCTTGTTCAAA 59.965 45.455 10.73 0.0 45.94 2.69 F
3007 3056 0.688749 GTAAGTCGGGAGGGGCCTTA 60.689 60.000 0.84 0.0 36.66 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1325 1362 0.039256 ACACAACAACCATGATGCGC 60.039 50.000 0.00 0.0 32.93 6.09 R
1943 1989 1.770658 AGTTGCAGGCCATATAGCTCA 59.229 47.619 5.01 0.0 0.00 4.26 R
2114 2160 2.357569 GGGGAGAATTCCTGCATCAAGT 60.358 50.000 0.65 0.0 43.49 3.16 R
3010 3059 0.109086 CGTGCTTCTCTGTCGGTCAT 60.109 55.000 0.00 0.0 0.00 3.06 R
3890 3969 3.996363 TGAACCAGACTGACAAATCATCG 59.004 43.478 3.32 0.0 33.22 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 53 1.308069 CCTCCACAAATCCACAGCCG 61.308 60.000 0.00 0.00 0.00 5.52
51 54 0.321564 CTCCACAAATCCACAGCCGA 60.322 55.000 0.00 0.00 0.00 5.54
163 168 2.434185 GCCGCCACGAGTTCATCA 60.434 61.111 0.00 0.00 0.00 3.07
189 194 2.181021 GCGTCGTCATCCCGTCTT 59.819 61.111 0.00 0.00 0.00 3.01
198 203 0.394352 CATCCCGTCTTCTTTGGGGG 60.394 60.000 0.00 0.00 43.50 5.40
271 277 2.447443 TCCTGCGTGTGAGTATCTCTT 58.553 47.619 0.00 0.00 34.92 2.85
318 324 6.978659 TCATCTCGCCAGTTATTAGTTAAGTG 59.021 38.462 0.00 0.00 39.84 3.16
343 349 6.183360 GGAGGCAAATTACTATTTTGAGACCC 60.183 42.308 7.36 1.04 36.40 4.46
414 425 4.621034 CGTGTACGTTAACGATAGGGTTTT 59.379 41.667 33.06 10.81 42.32 2.43
460 473 6.484977 GGCCATGGAAAATTCTTTGTGTAAAA 59.515 34.615 18.40 0.00 0.00 1.52
554 567 5.998363 AGCGATTTGGAGGGATTAAGTTATC 59.002 40.000 0.00 0.00 0.00 1.75
811 839 5.065731 GCCATTTGAGGTAAAGACTGATCTG 59.934 44.000 0.00 0.00 34.48 2.90
831 862 2.028839 TGCATTTTTCTCAGGTGGCATG 60.029 45.455 0.00 0.00 0.00 4.06
947 981 2.162408 GTGTGACATAAGCTTTGAGGCC 59.838 50.000 3.20 0.00 0.00 5.19
1096 1133 5.361285 TCTGATTACTTCAAGGAGCTCTACC 59.639 44.000 14.64 0.00 32.78 3.18
1097 1134 5.023452 TGATTACTTCAAGGAGCTCTACCA 58.977 41.667 14.64 0.00 0.00 3.25
1409 1446 7.858879 GGTTGTATGTCAAAGTTGTACGAAAAT 59.141 33.333 0.00 0.00 37.81 1.82
1410 1447 8.678510 GTTGTATGTCAAAGTTGTACGAAAATG 58.321 33.333 0.00 0.00 37.81 2.32
1459 1496 7.037873 ACAAACTGGTGTTATCAACCTATCCTA 60.038 37.037 0.00 0.00 34.96 2.94
1460 1497 7.504926 AACTGGTGTTATCAACCTATCCTAA 57.495 36.000 0.00 0.00 34.15 2.69
1461 1498 7.125792 ACTGGTGTTATCAACCTATCCTAAG 57.874 40.000 0.00 0.00 0.00 2.18
1462 1499 5.925509 TGGTGTTATCAACCTATCCTAAGC 58.074 41.667 0.00 0.00 0.00 3.09
1463 1500 5.427157 TGGTGTTATCAACCTATCCTAAGCA 59.573 40.000 0.00 0.00 0.00 3.91
1464 1501 6.069905 TGGTGTTATCAACCTATCCTAAGCAA 60.070 38.462 0.00 0.00 0.00 3.91
1465 1502 6.998673 GGTGTTATCAACCTATCCTAAGCAAT 59.001 38.462 0.00 0.00 0.00 3.56
1466 1503 7.173390 GGTGTTATCAACCTATCCTAAGCAATC 59.827 40.741 0.00 0.00 0.00 2.67
1680 1725 2.802816 CGTGTTAGATAATCAGCTGGCC 59.197 50.000 15.13 0.00 0.00 5.36
1736 1782 6.483307 TGCAGATAGGATTTTTGTATCTTCGG 59.517 38.462 0.00 0.00 32.29 4.30
1804 1850 4.090761 TGAAGGATGATGAGGTATTGCC 57.909 45.455 0.00 0.00 37.58 4.52
1975 2021 2.034558 GCCTGCAACTAGCTTGTTCAAA 59.965 45.455 10.73 0.00 45.94 2.69
2319 2366 4.289672 TCCTTTCTCTATTGGCTCACCTTT 59.710 41.667 0.00 0.00 36.63 3.11
2325 2372 5.663106 TCTCTATTGGCTCACCTTTCTGTAT 59.337 40.000 0.00 0.00 36.63 2.29
2326 2373 5.674525 TCTATTGGCTCACCTTTCTGTATG 58.325 41.667 0.00 0.00 36.63 2.39
2505 2552 4.890158 TTCTTAGTCAGGCAAGTCATGA 57.110 40.909 0.00 0.00 32.41 3.07
2513 2560 3.754850 TCAGGCAAGTCATGATTCAACAG 59.245 43.478 0.00 0.00 29.45 3.16
2537 2584 7.332678 CAGCATAGCTTGTTCATAGTATATGCA 59.667 37.037 14.21 0.00 39.82 3.96
3007 3056 0.688749 GTAAGTCGGGAGGGGCCTTA 60.689 60.000 0.84 0.00 36.66 2.69
3008 3057 0.688749 TAAGTCGGGAGGGGCCTTAC 60.689 60.000 0.84 0.00 36.66 2.34
3009 3058 2.686106 GTCGGGAGGGGCCTTACA 60.686 66.667 0.84 0.00 36.66 2.41
3010 3059 2.123180 TCGGGAGGGGCCTTACAA 59.877 61.111 0.84 0.00 36.66 2.41
3011 3060 1.307517 TCGGGAGGGGCCTTACAAT 60.308 57.895 0.84 0.00 36.66 2.71
3012 3061 1.152963 CGGGAGGGGCCTTACAATG 60.153 63.158 0.84 0.00 36.66 2.82
3013 3062 1.632018 CGGGAGGGGCCTTACAATGA 61.632 60.000 0.84 0.00 36.66 2.57
3014 3063 0.106669 GGGAGGGGCCTTACAATGAC 60.107 60.000 0.84 0.00 36.66 3.06
3015 3064 0.106669 GGAGGGGCCTTACAATGACC 60.107 60.000 0.84 0.00 0.00 4.02
3016 3065 0.463833 GAGGGGCCTTACAATGACCG 60.464 60.000 0.84 0.00 0.00 4.79
3017 3066 0.912487 AGGGGCCTTACAATGACCGA 60.912 55.000 0.84 0.00 0.00 4.69
3018 3067 0.746923 GGGGCCTTACAATGACCGAC 60.747 60.000 0.84 0.00 0.00 4.79
3019 3068 0.035820 GGGCCTTACAATGACCGACA 60.036 55.000 0.84 0.00 0.00 4.35
3020 3069 1.369625 GGCCTTACAATGACCGACAG 58.630 55.000 0.00 0.00 0.00 3.51
3021 3070 1.066430 GGCCTTACAATGACCGACAGA 60.066 52.381 0.00 0.00 0.00 3.41
3022 3071 2.271800 GCCTTACAATGACCGACAGAG 58.728 52.381 0.00 0.00 0.00 3.35
3023 3072 2.094182 GCCTTACAATGACCGACAGAGA 60.094 50.000 0.00 0.00 0.00 3.10
3024 3073 3.616560 GCCTTACAATGACCGACAGAGAA 60.617 47.826 0.00 0.00 0.00 2.87
3025 3074 4.177026 CCTTACAATGACCGACAGAGAAG 58.823 47.826 0.00 0.00 0.00 2.85
3026 3075 2.086054 ACAATGACCGACAGAGAAGC 57.914 50.000 0.00 0.00 0.00 3.86
3027 3076 1.344438 ACAATGACCGACAGAGAAGCA 59.656 47.619 0.00 0.00 0.00 3.91
3028 3077 1.728971 CAATGACCGACAGAGAAGCAC 59.271 52.381 0.00 0.00 0.00 4.40
3029 3078 0.109086 ATGACCGACAGAGAAGCACG 60.109 55.000 0.00 0.00 0.00 5.34
3031 3080 2.651361 CCGACAGAGAAGCACGGT 59.349 61.111 0.00 0.00 38.97 4.83
3032 3081 1.734477 CCGACAGAGAAGCACGGTG 60.734 63.158 3.15 3.15 38.97 4.94
3033 3082 1.007271 CGACAGAGAAGCACGGTGT 60.007 57.895 10.24 0.00 0.00 4.16
3034 3083 1.278172 CGACAGAGAAGCACGGTGTG 61.278 60.000 10.24 1.37 36.51 3.82
3035 3084 0.946221 GACAGAGAAGCACGGTGTGG 60.946 60.000 10.24 0.00 33.64 4.17
3036 3085 2.031163 AGAGAAGCACGGTGTGGC 59.969 61.111 10.24 0.00 33.64 5.01
3037 3086 3.050275 GAGAAGCACGGTGTGGCC 61.050 66.667 10.24 0.00 33.64 5.36
3038 3087 3.537206 GAGAAGCACGGTGTGGCCT 62.537 63.158 10.24 2.44 33.64 5.19
3039 3088 2.594592 GAAGCACGGTGTGGCCTT 60.595 61.111 10.24 4.29 33.64 4.35
3104 3180 2.027751 GACCGAGATACTGGCCGC 59.972 66.667 0.00 0.00 0.00 6.53
3258 3334 1.136500 GAAGGGATTACCGAAGCGAGT 59.864 52.381 0.00 0.00 46.96 4.18
3266 3342 0.874607 ACCGAAGCGAGTGTGACAAC 60.875 55.000 0.00 0.00 0.00 3.32
3410 3486 4.756458 GCTGCTGCTGCCTCGAGT 62.756 66.667 19.30 0.00 38.71 4.18
3649 3725 9.042008 CAGTCTTTGTAAACACTAGTACAATGT 57.958 33.333 15.97 0.00 39.34 2.71
3890 3969 6.808704 GCATCTCTTCTGATTGTTTAAAACCC 59.191 38.462 0.00 0.00 0.00 4.11
3899 3978 7.812191 TCTGATTGTTTAAAACCCGATGATTTG 59.188 33.333 0.00 0.00 0.00 2.32
3913 3992 4.633126 CGATGATTTGTCAGTCTGGTTCAT 59.367 41.667 0.00 2.48 0.00 2.57
4208 4288 7.595875 TGTGATGTTGCTTATGTTTCATTCTTG 59.404 33.333 0.00 0.00 0.00 3.02
4283 4363 3.181469 GGATGCTTGCATTTCCATCATGT 60.181 43.478 9.59 0.00 36.64 3.21
4472 4552 4.870991 GTCCTTATGTTCACTTCCTAGCAC 59.129 45.833 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 53 4.500826 GGAGGGGAGGGGAGGGTC 62.501 77.778 0.00 0.00 0.00 4.46
150 155 2.357952 TCGGTAGATGATGAACTCGTGG 59.642 50.000 0.00 0.00 0.00 4.94
151 156 3.622828 CTCGGTAGATGATGAACTCGTG 58.377 50.000 0.00 0.00 0.00 4.35
163 168 0.587285 GATGACGACGCTCGGTAGAT 59.413 55.000 11.13 0.00 45.59 1.98
189 194 3.702048 CGCGGAGACCCCCAAAGA 61.702 66.667 0.00 0.00 0.00 2.52
271 277 5.357032 TGAATCTATGTACGCAGAGACAGAA 59.643 40.000 3.05 0.00 44.50 3.02
318 324 6.183360 GGGTCTCAAAATAGTAATTTGCCTCC 60.183 42.308 5.90 7.29 37.62 4.30
324 330 9.489084 GCAAAAAGGGTCTCAAAATAGTAATTT 57.511 29.630 0.00 0.00 36.87 1.82
333 339 6.780522 ACCTAATAGCAAAAAGGGTCTCAAAA 59.219 34.615 0.00 0.00 33.16 2.44
343 349 4.695217 TTCCGCACCTAATAGCAAAAAG 57.305 40.909 0.00 0.00 0.00 2.27
414 425 4.751600 GCCATTAATCACACAGATCATCGA 59.248 41.667 0.00 0.00 35.39 3.59
460 473 7.503230 GGCCAAGTAGAACTAGACTAGAACTAT 59.497 40.741 16.55 0.77 0.00 2.12
811 839 2.028748 ACATGCCACCTGAGAAAAATGC 60.029 45.455 0.00 0.00 0.00 3.56
872 903 7.709182 CCTTTTCCCAAAATACGAAGAAAACTT 59.291 33.333 0.00 0.00 31.82 2.66
1325 1362 0.039256 ACACAACAACCATGATGCGC 60.039 50.000 0.00 0.00 32.93 6.09
1409 1446 6.018262 GTCACTGCAAACATACTAACACTTCA 60.018 38.462 0.00 0.00 0.00 3.02
1410 1447 6.018262 TGTCACTGCAAACATACTAACACTTC 60.018 38.462 0.00 0.00 0.00 3.01
1736 1782 5.128919 AGGATCTTTGGATCTGCAACATAC 58.871 41.667 6.06 0.00 45.53 2.39
1932 1978 6.389278 AGGCCATATAGCTCATCTAATGGATT 59.611 38.462 5.01 0.00 37.71 3.01
1933 1979 5.910003 AGGCCATATAGCTCATCTAATGGAT 59.090 40.000 5.01 0.00 37.71 3.41
1943 1989 1.770658 AGTTGCAGGCCATATAGCTCA 59.229 47.619 5.01 0.00 0.00 4.26
2114 2160 2.357569 GGGGAGAATTCCTGCATCAAGT 60.358 50.000 0.65 0.00 43.49 3.16
2505 2552 5.909621 ATGAACAAGCTATGCTGTTGAAT 57.090 34.783 6.24 0.00 39.62 2.57
2513 2560 7.332926 AGTGCATATACTATGAACAAGCTATGC 59.667 37.037 7.77 0.00 38.32 3.14
2537 2584 4.578105 CACAGCTTCTTGGAAAAGAGAAGT 59.422 41.667 12.93 0.65 46.67 3.01
2850 2899 5.223382 CGACAGAGAAGCTTTAACAGAAGA 58.777 41.667 0.00 0.00 0.00 2.87
2926 2975 1.372499 GTGACTGTTCGCCGCACTA 60.372 57.895 0.00 0.00 0.00 2.74
3007 3056 1.344438 TGCTTCTCTGTCGGTCATTGT 59.656 47.619 0.00 0.00 0.00 2.71
3008 3057 1.728971 GTGCTTCTCTGTCGGTCATTG 59.271 52.381 0.00 0.00 0.00 2.82
3009 3058 1.670087 CGTGCTTCTCTGTCGGTCATT 60.670 52.381 0.00 0.00 0.00 2.57
3010 3059 0.109086 CGTGCTTCTCTGTCGGTCAT 60.109 55.000 0.00 0.00 0.00 3.06
3011 3060 1.285950 CGTGCTTCTCTGTCGGTCA 59.714 57.895 0.00 0.00 0.00 4.02
3012 3061 1.444553 CCGTGCTTCTCTGTCGGTC 60.445 63.158 0.00 0.00 36.99 4.79
3013 3062 2.651361 CCGTGCTTCTCTGTCGGT 59.349 61.111 0.00 0.00 36.99 4.69
3014 3063 1.734477 CACCGTGCTTCTCTGTCGG 60.734 63.158 0.00 0.00 45.53 4.79
3015 3064 1.007271 ACACCGTGCTTCTCTGTCG 60.007 57.895 0.00 0.00 0.00 4.35
3016 3065 0.946221 CCACACCGTGCTTCTCTGTC 60.946 60.000 0.00 0.00 31.34 3.51
3017 3066 1.069765 CCACACCGTGCTTCTCTGT 59.930 57.895 0.00 0.00 31.34 3.41
3018 3067 2.320587 GCCACACCGTGCTTCTCTG 61.321 63.158 0.00 0.00 31.34 3.35
3019 3068 2.031163 GCCACACCGTGCTTCTCT 59.969 61.111 0.00 0.00 31.34 3.10
3020 3069 3.050275 GGCCACACCGTGCTTCTC 61.050 66.667 0.00 0.00 31.34 2.87
3021 3070 1.764571 TAAGGCCACACCGTGCTTCT 61.765 55.000 5.01 0.00 46.52 2.85
3022 3071 1.302192 TAAGGCCACACCGTGCTTC 60.302 57.895 5.01 0.00 46.52 3.86
3023 3072 1.599797 GTAAGGCCACACCGTGCTT 60.600 57.895 5.01 0.00 46.52 3.91
3024 3073 2.032071 GTAAGGCCACACCGTGCT 59.968 61.111 5.01 0.00 46.52 4.40
3025 3074 1.241315 ATTGTAAGGCCACACCGTGC 61.241 55.000 5.01 0.00 46.52 5.34
3026 3075 0.521291 CATTGTAAGGCCACACCGTG 59.479 55.000 5.01 0.00 46.52 4.94
3027 3076 0.398696 TCATTGTAAGGCCACACCGT 59.601 50.000 5.01 0.00 46.52 4.83
3028 3077 0.802494 GTCATTGTAAGGCCACACCG 59.198 55.000 5.01 0.00 46.52 4.94
3029 3078 1.173913 GGTCATTGTAAGGCCACACC 58.826 55.000 5.01 0.00 39.61 4.16
3030 3079 0.802494 CGGTCATTGTAAGGCCACAC 59.198 55.000 5.01 1.95 0.00 3.82
3031 3080 0.398696 ACGGTCATTGTAAGGCCACA 59.601 50.000 5.01 0.00 0.00 4.17
3032 3081 1.467342 GAACGGTCATTGTAAGGCCAC 59.533 52.381 5.01 0.00 0.00 5.01
3033 3082 1.072489 TGAACGGTCATTGTAAGGCCA 59.928 47.619 5.01 0.00 0.00 5.36
3034 3083 1.816074 TGAACGGTCATTGTAAGGCC 58.184 50.000 0.00 0.00 0.00 5.19
3035 3084 2.812011 ACTTGAACGGTCATTGTAAGGC 59.188 45.455 2.76 0.00 32.48 4.35
3036 3085 4.062293 TGACTTGAACGGTCATTGTAAGG 58.938 43.478 2.76 0.00 38.57 2.69
3037 3086 4.376008 CGTGACTTGAACGGTCATTGTAAG 60.376 45.833 2.76 0.00 44.04 2.34
3038 3087 3.491639 CGTGACTTGAACGGTCATTGTAA 59.508 43.478 2.76 0.00 44.04 2.41
3039 3088 3.054166 CGTGACTTGAACGGTCATTGTA 58.946 45.455 2.76 0.00 44.04 2.41
3079 3128 1.674441 CAGTATCTCGGTCACGGCTTA 59.326 52.381 0.00 0.00 41.39 3.09
3104 3180 2.363680 AGTATCTCGGTCATGGCTTGAG 59.636 50.000 12.15 12.15 34.17 3.02
3258 3334 3.488553 CGTCTGTGTCTACTGTTGTCACA 60.489 47.826 17.30 17.30 37.44 3.58
3266 3342 0.881796 TGGAGCGTCTGTGTCTACTG 59.118 55.000 0.00 0.00 0.00 2.74
3410 3486 5.024118 AGGTCTTTCAGCTTAGCTAGGTTA 58.976 41.667 6.35 0.00 36.40 2.85
3701 3779 0.394352 GGCGATGTCATTGGAAGGGT 60.394 55.000 2.16 0.00 0.00 4.34
3749 3827 6.228616 TGGAGATGGATTATGTCAACGTTA 57.771 37.500 0.00 0.00 30.90 3.18
3890 3969 3.996363 TGAACCAGACTGACAAATCATCG 59.004 43.478 3.32 0.00 33.22 3.84
3899 3978 5.181748 AGCTTTATGATGAACCAGACTGAC 58.818 41.667 3.32 0.00 0.00 3.51
4181 4261 7.660112 AGAATGAAACATAAGCAACATCACAA 58.340 30.769 0.00 0.00 0.00 3.33
4208 4288 5.574443 GGAAACAAGCTTGCAATCTTGATAC 59.426 40.000 36.74 25.35 41.50 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.