Multiple sequence alignment - TraesCS1D01G119400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G119400 chr1D 100.000 3071 0 0 1 3071 115579172 115576102 0.000000e+00 5672.0
1 TraesCS1D01G119400 chr1D 100.000 564 0 0 3435 3998 115575738 115575175 0.000000e+00 1042.0
2 TraesCS1D01G119400 chr1A 96.084 2707 65 12 362 3059 126859141 126856467 0.000000e+00 4373.0
3 TraesCS1D01G119400 chr1A 96.263 562 19 1 3437 3998 126856220 126855661 0.000000e+00 920.0
4 TraesCS1D01G119400 chr1B 96.489 1823 51 10 362 2177 177002817 177001001 0.000000e+00 3000.0
5 TraesCS1D01G119400 chr1B 95.991 873 33 1 2176 3046 177000922 177000050 0.000000e+00 1417.0
6 TraesCS1D01G119400 chr1B 95.697 488 21 0 3511 3998 176999709 176999222 0.000000e+00 785.0
7 TraesCS1D01G119400 chr1B 100.000 45 0 0 3444 3488 176999750 176999706 2.560000e-12 84.2
8 TraesCS1D01G119400 chr3D 82.322 939 158 5 1156 2093 81364229 81365160 0.000000e+00 808.0
9 TraesCS1D01G119400 chr3B 81.427 953 168 6 1156 2107 127290014 127290958 0.000000e+00 771.0
10 TraesCS1D01G119400 chr3A 81.576 939 165 6 1156 2093 95527724 95528655 0.000000e+00 769.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G119400 chr1D 115575175 115579172 3997 True 3357.00 5672 100.00000 1 3998 2 chr1D.!!$R1 3997
1 TraesCS1D01G119400 chr1A 126855661 126859141 3480 True 2646.50 4373 96.17350 362 3998 2 chr1A.!!$R1 3636
2 TraesCS1D01G119400 chr1B 176999222 177002817 3595 True 1321.55 3000 97.04425 362 3998 4 chr1B.!!$R1 3636
3 TraesCS1D01G119400 chr3D 81364229 81365160 931 False 808.00 808 82.32200 1156 2093 1 chr3D.!!$F1 937
4 TraesCS1D01G119400 chr3B 127290014 127290958 944 False 771.00 771 81.42700 1156 2107 1 chr3B.!!$F1 951
5 TraesCS1D01G119400 chr3A 95527724 95528655 931 False 769.00 769 81.57600 1156 2093 1 chr3A.!!$F1 937

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.035458 CCCCTTCACGAAGCTCAAGT 59.965 55.000 1.04 0.00 37.11 3.16 F
346 347 0.037326 TTGATGGTCGTCTCACTGGC 60.037 55.000 0.00 0.00 0.00 4.85 F
394 395 0.240145 CGTGCGTAGACCACTTCTCA 59.760 55.000 0.00 0.00 35.55 3.27 F
1494 1503 0.392060 TCGTGTACGAGCTGCTCCTA 60.392 55.000 22.97 13.48 44.22 2.94 F
2123 2132 3.459227 TGTCCCAGGATATCAATCTGCAA 59.541 43.478 4.83 0.00 32.29 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1428 1437 1.297451 GAACGGATCGTCCTCGTCG 60.297 63.158 0.00 0.0 39.99 5.12 R
2239 2328 1.331214 ACCACCCACAAGAATGCAAG 58.669 50.000 0.00 0.0 0.00 4.01 R
2265 2354 3.837213 AATGTGATGCTGGTTCGAAAG 57.163 42.857 0.00 0.0 0.00 2.62 R
2505 2596 2.549754 GCATGGCGCATATAAGTGTTCT 59.450 45.455 10.83 0.0 41.79 3.01 R
3681 3772 4.072131 GGACTTACCTCATTGTTTGCTCA 58.928 43.478 0.00 0.0 35.41 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.515404 GTGACATACACCCCGCTC 57.485 61.111 0.00 0.00 43.05 5.03
23 24 1.898154 GTGACATACACCCCGCTCT 59.102 57.895 0.00 0.00 43.05 4.09
24 25 0.249398 GTGACATACACCCCGCTCTT 59.751 55.000 0.00 0.00 43.05 2.85
25 26 0.981183 TGACATACACCCCGCTCTTT 59.019 50.000 0.00 0.00 0.00 2.52
26 27 1.338674 TGACATACACCCCGCTCTTTG 60.339 52.381 0.00 0.00 0.00 2.77
27 28 0.690762 ACATACACCCCGCTCTTTGT 59.309 50.000 0.00 0.00 0.00 2.83
28 29 1.338769 ACATACACCCCGCTCTTTGTC 60.339 52.381 0.00 0.00 0.00 3.18
29 30 0.981183 ATACACCCCGCTCTTTGTCA 59.019 50.000 0.00 0.00 0.00 3.58
30 31 0.759959 TACACCCCGCTCTTTGTCAA 59.240 50.000 0.00 0.00 0.00 3.18
31 32 0.106918 ACACCCCGCTCTTTGTCAAA 60.107 50.000 0.00 0.00 0.00 2.69
32 33 1.028905 CACCCCGCTCTTTGTCAAAA 58.971 50.000 0.00 0.00 0.00 2.44
33 34 1.613437 CACCCCGCTCTTTGTCAAAAT 59.387 47.619 0.00 0.00 0.00 1.82
34 35 2.035832 CACCCCGCTCTTTGTCAAAATT 59.964 45.455 0.00 0.00 0.00 1.82
35 36 2.035832 ACCCCGCTCTTTGTCAAAATTG 59.964 45.455 0.00 0.00 0.00 2.32
36 37 2.295909 CCCCGCTCTTTGTCAAAATTGA 59.704 45.455 0.00 0.00 34.20 2.57
37 38 3.056607 CCCCGCTCTTTGTCAAAATTGAT 60.057 43.478 0.00 0.00 39.73 2.57
38 39 4.559153 CCCGCTCTTTGTCAAAATTGATT 58.441 39.130 0.00 0.00 39.73 2.57
39 40 4.622740 CCCGCTCTTTGTCAAAATTGATTC 59.377 41.667 0.00 0.00 39.73 2.52
40 41 5.464168 CCGCTCTTTGTCAAAATTGATTCT 58.536 37.500 0.00 0.00 39.73 2.40
41 42 6.349280 CCCGCTCTTTGTCAAAATTGATTCTA 60.349 38.462 0.00 0.00 39.73 2.10
42 43 7.083858 CCGCTCTTTGTCAAAATTGATTCTAA 58.916 34.615 0.00 0.00 39.73 2.10
43 44 7.272084 CCGCTCTTTGTCAAAATTGATTCTAAG 59.728 37.037 0.00 1.48 39.73 2.18
44 45 8.017373 CGCTCTTTGTCAAAATTGATTCTAAGA 58.983 33.333 0.00 5.21 39.73 2.10
45 46 9.122613 GCTCTTTGTCAAAATTGATTCTAAGAC 57.877 33.333 0.00 0.00 39.73 3.01
46 47 9.617975 CTCTTTGTCAAAATTGATTCTAAGACC 57.382 33.333 0.00 0.00 39.73 3.85
47 48 9.130661 TCTTTGTCAAAATTGATTCTAAGACCA 57.869 29.630 0.00 0.00 39.73 4.02
48 49 9.403110 CTTTGTCAAAATTGATTCTAAGACCAG 57.597 33.333 0.00 0.00 39.73 4.00
49 50 8.690203 TTGTCAAAATTGATTCTAAGACCAGA 57.310 30.769 0.00 0.00 39.73 3.86
50 51 8.868522 TGTCAAAATTGATTCTAAGACCAGAT 57.131 30.769 0.00 0.00 39.73 2.90
51 52 9.958180 TGTCAAAATTGATTCTAAGACCAGATA 57.042 29.630 0.00 0.00 39.73 1.98
58 59 9.956640 ATTGATTCTAAGACCAGATATGGATTC 57.043 33.333 14.70 0.52 0.00 2.52
59 60 8.496534 TGATTCTAAGACCAGATATGGATTCA 57.503 34.615 14.70 0.00 0.00 2.57
60 61 8.937835 TGATTCTAAGACCAGATATGGATTCAA 58.062 33.333 14.70 4.94 0.00 2.69
61 62 9.784531 GATTCTAAGACCAGATATGGATTCAAA 57.215 33.333 14.70 6.07 0.00 2.69
63 64 8.964476 TCTAAGACCAGATATGGATTCAAAAC 57.036 34.615 14.70 0.00 0.00 2.43
64 65 8.548025 TCTAAGACCAGATATGGATTCAAAACA 58.452 33.333 14.70 0.00 0.00 2.83
65 66 7.396540 AAGACCAGATATGGATTCAAAACAC 57.603 36.000 14.70 0.00 0.00 3.32
66 67 6.484288 AGACCAGATATGGATTCAAAACACA 58.516 36.000 14.70 0.00 0.00 3.72
67 68 7.121382 AGACCAGATATGGATTCAAAACACAT 58.879 34.615 14.70 0.00 0.00 3.21
68 69 7.284034 AGACCAGATATGGATTCAAAACACATC 59.716 37.037 14.70 0.00 0.00 3.06
69 70 6.891361 ACCAGATATGGATTCAAAACACATCA 59.109 34.615 14.70 0.00 0.00 3.07
70 71 7.067859 ACCAGATATGGATTCAAAACACATCAG 59.932 37.037 14.70 0.00 0.00 2.90
71 72 6.916387 CAGATATGGATTCAAAACACATCAGC 59.084 38.462 0.00 0.00 0.00 4.26
72 73 6.604396 AGATATGGATTCAAAACACATCAGCA 59.396 34.615 0.00 0.00 0.00 4.41
73 74 4.508461 TGGATTCAAAACACATCAGCAG 57.492 40.909 0.00 0.00 0.00 4.24
74 75 3.256383 TGGATTCAAAACACATCAGCAGG 59.744 43.478 0.00 0.00 0.00 4.85
75 76 3.507233 GGATTCAAAACACATCAGCAGGA 59.493 43.478 0.00 0.00 0.00 3.86
76 77 4.022068 GGATTCAAAACACATCAGCAGGAA 60.022 41.667 0.00 0.00 0.00 3.36
77 78 3.988379 TCAAAACACATCAGCAGGAAC 57.012 42.857 0.00 0.00 0.00 3.62
78 79 3.554934 TCAAAACACATCAGCAGGAACT 58.445 40.909 0.00 0.00 43.88 3.01
79 80 3.953612 TCAAAACACATCAGCAGGAACTT 59.046 39.130 0.00 0.00 34.60 2.66
80 81 4.036734 TCAAAACACATCAGCAGGAACTTC 59.963 41.667 0.00 0.00 34.60 3.01
81 82 2.936919 ACACATCAGCAGGAACTTCA 57.063 45.000 0.00 0.00 34.60 3.02
82 83 2.775890 ACACATCAGCAGGAACTTCAG 58.224 47.619 0.00 0.00 34.60 3.02
83 84 2.082231 CACATCAGCAGGAACTTCAGG 58.918 52.381 0.00 0.00 34.60 3.86
84 85 1.701847 ACATCAGCAGGAACTTCAGGT 59.298 47.619 0.00 0.00 34.60 4.00
85 86 2.107204 ACATCAGCAGGAACTTCAGGTT 59.893 45.455 0.00 0.00 41.40 3.50
86 87 3.152341 CATCAGCAGGAACTTCAGGTTT 58.848 45.455 0.00 0.00 38.41 3.27
87 88 4.202461 ACATCAGCAGGAACTTCAGGTTTA 60.202 41.667 0.00 0.00 38.41 2.01
88 89 4.640771 TCAGCAGGAACTTCAGGTTTAT 57.359 40.909 0.00 0.00 38.41 1.40
89 90 4.579869 TCAGCAGGAACTTCAGGTTTATC 58.420 43.478 0.00 0.00 38.41 1.75
90 91 4.041567 TCAGCAGGAACTTCAGGTTTATCA 59.958 41.667 0.00 0.00 38.41 2.15
91 92 4.761739 CAGCAGGAACTTCAGGTTTATCAA 59.238 41.667 0.00 0.00 38.41 2.57
92 93 5.241506 CAGCAGGAACTTCAGGTTTATCAAA 59.758 40.000 0.00 0.00 38.41 2.69
93 94 5.241728 AGCAGGAACTTCAGGTTTATCAAAC 59.758 40.000 0.00 0.00 38.41 2.93
94 95 5.241728 GCAGGAACTTCAGGTTTATCAAACT 59.758 40.000 2.15 0.00 37.95 2.66
95 96 6.430000 GCAGGAACTTCAGGTTTATCAAACTA 59.570 38.462 2.15 0.00 37.95 2.24
96 97 7.040686 GCAGGAACTTCAGGTTTATCAAACTAA 60.041 37.037 2.15 0.00 37.95 2.24
97 98 9.014297 CAGGAACTTCAGGTTTATCAAACTAAT 57.986 33.333 2.15 0.00 37.95 1.73
98 99 9.232473 AGGAACTTCAGGTTTATCAAACTAATC 57.768 33.333 2.15 0.00 37.08 1.75
99 100 9.232473 GGAACTTCAGGTTTATCAAACTAATCT 57.768 33.333 2.15 0.00 41.14 2.40
140 141 9.973450 ATAATAAGCATATCATCGACATACTCC 57.027 33.333 0.00 0.00 0.00 3.85
141 142 5.728637 AAGCATATCATCGACATACTCCA 57.271 39.130 0.00 0.00 0.00 3.86
142 143 5.728637 AGCATATCATCGACATACTCCAA 57.271 39.130 0.00 0.00 0.00 3.53
143 144 5.718146 AGCATATCATCGACATACTCCAAG 58.282 41.667 0.00 0.00 0.00 3.61
144 145 5.244851 AGCATATCATCGACATACTCCAAGT 59.755 40.000 0.00 0.00 0.00 3.16
145 146 5.347093 GCATATCATCGACATACTCCAAGTG 59.653 44.000 0.00 0.00 0.00 3.16
146 147 6.681777 CATATCATCGACATACTCCAAGTGA 58.318 40.000 0.00 0.00 0.00 3.41
157 158 3.840124 CTCCAAGTGAGTAATACCCCC 57.160 52.381 0.00 0.00 36.27 5.40
158 159 3.385115 CTCCAAGTGAGTAATACCCCCT 58.615 50.000 0.00 0.00 36.27 4.79
159 160 3.780850 CTCCAAGTGAGTAATACCCCCTT 59.219 47.826 0.00 0.00 36.27 3.95
160 161 3.778629 TCCAAGTGAGTAATACCCCCTTC 59.221 47.826 0.00 0.00 0.00 3.46
161 162 3.521937 CCAAGTGAGTAATACCCCCTTCA 59.478 47.826 0.00 0.00 0.00 3.02
162 163 4.514401 CAAGTGAGTAATACCCCCTTCAC 58.486 47.826 2.65 2.65 36.17 3.18
163 164 2.764572 AGTGAGTAATACCCCCTTCACG 59.235 50.000 4.74 0.00 39.76 4.35
164 165 2.762327 GTGAGTAATACCCCCTTCACGA 59.238 50.000 0.00 0.00 0.00 4.35
165 166 3.196254 GTGAGTAATACCCCCTTCACGAA 59.804 47.826 0.00 0.00 0.00 3.85
166 167 3.449737 TGAGTAATACCCCCTTCACGAAG 59.550 47.826 0.00 0.00 38.14 3.79
167 168 2.169978 AGTAATACCCCCTTCACGAAGC 59.830 50.000 1.04 0.00 37.11 3.86
168 169 1.286248 AATACCCCCTTCACGAAGCT 58.714 50.000 1.04 0.00 37.11 3.74
169 170 0.831307 ATACCCCCTTCACGAAGCTC 59.169 55.000 1.04 0.00 37.11 4.09
170 171 0.543410 TACCCCCTTCACGAAGCTCA 60.543 55.000 1.04 0.00 37.11 4.26
171 172 1.374947 CCCCCTTCACGAAGCTCAA 59.625 57.895 1.04 0.00 37.11 3.02
172 173 0.674895 CCCCCTTCACGAAGCTCAAG 60.675 60.000 1.04 0.00 37.11 3.02
173 174 0.035458 CCCCTTCACGAAGCTCAAGT 59.965 55.000 1.04 0.00 37.11 3.16
174 175 1.151668 CCCTTCACGAAGCTCAAGTG 58.848 55.000 9.15 9.15 37.11 3.16
175 176 1.270305 CCCTTCACGAAGCTCAAGTGA 60.270 52.381 12.84 12.84 42.36 3.41
176 177 2.064762 CCTTCACGAAGCTCAAGTGAG 58.935 52.381 15.28 3.84 44.37 3.51
177 178 2.546795 CCTTCACGAAGCTCAAGTGAGT 60.547 50.000 15.28 0.00 44.37 3.41
178 179 3.305403 CCTTCACGAAGCTCAAGTGAGTA 60.305 47.826 15.28 5.23 44.37 2.59
179 180 4.299155 CTTCACGAAGCTCAAGTGAGTAA 58.701 43.478 15.28 4.70 44.37 2.24
180 181 4.521130 TCACGAAGCTCAAGTGAGTAAT 57.479 40.909 12.84 0.00 43.85 1.89
181 182 5.638596 TCACGAAGCTCAAGTGAGTAATA 57.361 39.130 12.84 0.00 43.85 0.98
182 183 6.020971 TCACGAAGCTCAAGTGAGTAATAA 57.979 37.500 12.84 0.00 43.85 1.40
183 184 5.862323 TCACGAAGCTCAAGTGAGTAATAAC 59.138 40.000 12.84 0.00 43.85 1.89
184 185 5.062308 CACGAAGCTCAAGTGAGTAATAACC 59.938 44.000 9.94 0.00 43.85 2.85
185 186 4.567159 CGAAGCTCAAGTGAGTAATAACCC 59.433 45.833 9.94 0.00 43.85 4.11
186 187 4.489306 AGCTCAAGTGAGTAATAACCCC 57.511 45.455 9.94 0.00 43.85 4.95
187 188 4.104831 AGCTCAAGTGAGTAATAACCCCT 58.895 43.478 9.94 0.00 43.85 4.79
188 189 4.536489 AGCTCAAGTGAGTAATAACCCCTT 59.464 41.667 9.94 0.00 43.85 3.95
189 190 5.014228 AGCTCAAGTGAGTAATAACCCCTTT 59.986 40.000 9.94 0.00 43.85 3.11
190 191 5.123979 GCTCAAGTGAGTAATAACCCCTTTG 59.876 44.000 9.94 0.00 43.85 2.77
191 192 6.442541 TCAAGTGAGTAATAACCCCTTTGA 57.557 37.500 0.00 0.00 0.00 2.69
192 193 7.027874 TCAAGTGAGTAATAACCCCTTTGAT 57.972 36.000 0.00 0.00 0.00 2.57
193 194 6.884295 TCAAGTGAGTAATAACCCCTTTGATG 59.116 38.462 0.00 0.00 0.00 3.07
194 195 6.388619 AGTGAGTAATAACCCCTTTGATGT 57.611 37.500 0.00 0.00 0.00 3.06
195 196 6.180472 AGTGAGTAATAACCCCTTTGATGTG 58.820 40.000 0.00 0.00 0.00 3.21
196 197 6.012858 AGTGAGTAATAACCCCTTTGATGTGA 60.013 38.462 0.00 0.00 0.00 3.58
197 198 6.093633 GTGAGTAATAACCCCTTTGATGTGAC 59.906 42.308 0.00 0.00 0.00 3.67
198 199 5.183228 AGTAATAACCCCTTTGATGTGACG 58.817 41.667 0.00 0.00 0.00 4.35
199 200 3.992943 ATAACCCCTTTGATGTGACGA 57.007 42.857 0.00 0.00 0.00 4.20
200 201 2.185004 AACCCCTTTGATGTGACGAG 57.815 50.000 0.00 0.00 0.00 4.18
201 202 0.321653 ACCCCTTTGATGTGACGAGC 60.322 55.000 0.00 0.00 0.00 5.03
202 203 1.026718 CCCCTTTGATGTGACGAGCC 61.027 60.000 0.00 0.00 0.00 4.70
203 204 0.321564 CCCTTTGATGTGACGAGCCA 60.322 55.000 0.00 0.00 0.00 4.75
204 205 1.679944 CCCTTTGATGTGACGAGCCAT 60.680 52.381 0.00 0.00 0.00 4.40
205 206 1.667724 CCTTTGATGTGACGAGCCATC 59.332 52.381 0.00 0.00 38.34 3.51
206 207 2.625737 CTTTGATGTGACGAGCCATCT 58.374 47.619 11.90 0.00 38.59 2.90
207 208 2.768253 TTGATGTGACGAGCCATCTT 57.232 45.000 11.90 0.00 38.59 2.40
208 209 3.885724 TTGATGTGACGAGCCATCTTA 57.114 42.857 11.90 1.79 38.59 2.10
209 210 3.443099 TGATGTGACGAGCCATCTTAG 57.557 47.619 11.90 0.00 38.59 2.18
210 211 2.131183 GATGTGACGAGCCATCTTAGC 58.869 52.381 0.00 0.00 35.63 3.09
211 212 0.894835 TGTGACGAGCCATCTTAGCA 59.105 50.000 0.00 0.00 0.00 3.49
212 213 1.281899 GTGACGAGCCATCTTAGCAC 58.718 55.000 0.00 0.00 0.00 4.40
213 214 0.175760 TGACGAGCCATCTTAGCACC 59.824 55.000 0.00 0.00 0.00 5.01
214 215 0.461961 GACGAGCCATCTTAGCACCT 59.538 55.000 0.00 0.00 0.00 4.00
215 216 0.905357 ACGAGCCATCTTAGCACCTT 59.095 50.000 0.00 0.00 0.00 3.50
216 217 1.134670 ACGAGCCATCTTAGCACCTTC 60.135 52.381 0.00 0.00 0.00 3.46
217 218 1.137872 CGAGCCATCTTAGCACCTTCT 59.862 52.381 0.00 0.00 0.00 2.85
218 219 2.362397 CGAGCCATCTTAGCACCTTCTA 59.638 50.000 0.00 0.00 0.00 2.10
219 220 3.181475 CGAGCCATCTTAGCACCTTCTAA 60.181 47.826 0.00 0.00 0.00 2.10
220 221 4.376146 GAGCCATCTTAGCACCTTCTAAG 58.624 47.826 4.62 4.62 44.19 2.18
226 227 5.860941 TCTTAGCACCTTCTAAGATGAGG 57.139 43.478 8.64 0.00 45.58 3.86
227 228 4.651503 TCTTAGCACCTTCTAAGATGAGGG 59.348 45.833 8.64 0.00 45.58 4.30
228 229 1.488393 AGCACCTTCTAAGATGAGGGC 59.512 52.381 0.00 0.00 36.77 5.19
229 230 1.475930 GCACCTTCTAAGATGAGGGCC 60.476 57.143 0.00 0.00 36.77 5.80
230 231 1.839994 CACCTTCTAAGATGAGGGCCA 59.160 52.381 6.18 0.00 36.77 5.36
231 232 2.239654 CACCTTCTAAGATGAGGGCCAA 59.760 50.000 6.18 0.00 36.77 4.52
232 233 3.117738 CACCTTCTAAGATGAGGGCCAAT 60.118 47.826 6.18 0.00 36.77 3.16
233 234 3.117738 ACCTTCTAAGATGAGGGCCAATG 60.118 47.826 6.18 0.00 36.77 2.82
234 235 2.645838 TCTAAGATGAGGGCCAATGC 57.354 50.000 6.18 0.00 0.00 3.56
235 236 1.202687 TCTAAGATGAGGGCCAATGCG 60.203 52.381 6.18 0.00 38.85 4.73
236 237 0.546122 TAAGATGAGGGCCAATGCGT 59.454 50.000 6.18 0.00 38.85 5.24
237 238 0.749454 AAGATGAGGGCCAATGCGTC 60.749 55.000 6.18 3.02 38.85 5.19
238 239 2.124151 ATGAGGGCCAATGCGTCC 60.124 61.111 6.18 0.00 38.85 4.79
239 240 2.891941 GATGAGGGCCAATGCGTCCA 62.892 60.000 6.18 0.00 38.85 4.02
240 241 3.134127 GAGGGCCAATGCGTCCAC 61.134 66.667 6.18 0.00 38.85 4.02
243 244 3.799755 GGCCAATGCGTCCACGAC 61.800 66.667 2.58 0.00 43.02 4.34
244 245 2.742372 GCCAATGCGTCCACGACT 60.742 61.111 2.58 0.00 43.02 4.18
245 246 1.447140 GCCAATGCGTCCACGACTA 60.447 57.895 2.58 0.00 43.02 2.59
246 247 0.810031 GCCAATGCGTCCACGACTAT 60.810 55.000 2.58 0.00 43.02 2.12
247 248 0.930310 CCAATGCGTCCACGACTATG 59.070 55.000 2.58 0.00 43.02 2.23
248 249 1.640428 CAATGCGTCCACGACTATGT 58.360 50.000 2.58 0.00 43.02 2.29
249 250 1.999735 CAATGCGTCCACGACTATGTT 59.000 47.619 2.58 0.00 43.02 2.71
250 251 3.183754 CAATGCGTCCACGACTATGTTA 58.816 45.455 2.58 0.00 43.02 2.41
251 252 3.513680 ATGCGTCCACGACTATGTTAA 57.486 42.857 2.58 0.00 43.02 2.01
252 253 3.300852 TGCGTCCACGACTATGTTAAA 57.699 42.857 2.58 0.00 43.02 1.52
253 254 2.988493 TGCGTCCACGACTATGTTAAAC 59.012 45.455 2.58 0.00 43.02 2.01
254 255 2.988493 GCGTCCACGACTATGTTAAACA 59.012 45.455 2.58 0.00 43.02 2.83
255 256 3.429543 GCGTCCACGACTATGTTAAACAA 59.570 43.478 2.58 0.00 43.02 2.83
256 257 4.084433 GCGTCCACGACTATGTTAAACAAA 60.084 41.667 2.58 0.00 43.02 2.83
257 258 5.558653 GCGTCCACGACTATGTTAAACAAAA 60.559 40.000 2.58 0.00 43.02 2.44
258 259 6.068931 CGTCCACGACTATGTTAAACAAAAG 58.931 40.000 0.00 0.00 43.02 2.27
259 260 5.849604 GTCCACGACTATGTTAAACAAAAGC 59.150 40.000 0.00 0.00 0.00 3.51
260 261 5.527951 TCCACGACTATGTTAAACAAAAGCA 59.472 36.000 0.00 0.00 0.00 3.91
261 262 5.851177 CCACGACTATGTTAAACAAAAGCAG 59.149 40.000 0.00 0.00 0.00 4.24
262 263 5.851177 CACGACTATGTTAAACAAAAGCAGG 59.149 40.000 0.00 0.00 0.00 4.85
263 264 5.048991 ACGACTATGTTAAACAAAAGCAGGG 60.049 40.000 0.00 0.00 0.00 4.45
264 265 5.134202 ACTATGTTAAACAAAAGCAGGGC 57.866 39.130 0.00 0.00 0.00 5.19
265 266 2.500509 TGTTAAACAAAAGCAGGGCG 57.499 45.000 0.00 0.00 0.00 6.13
266 267 2.025155 TGTTAAACAAAAGCAGGGCGA 58.975 42.857 0.00 0.00 0.00 5.54
267 268 2.625790 TGTTAAACAAAAGCAGGGCGAT 59.374 40.909 0.00 0.00 0.00 4.58
268 269 3.821600 TGTTAAACAAAAGCAGGGCGATA 59.178 39.130 0.00 0.00 0.00 2.92
269 270 4.083003 TGTTAAACAAAAGCAGGGCGATAG 60.083 41.667 0.00 0.00 0.00 2.08
270 271 1.463674 AACAAAAGCAGGGCGATAGG 58.536 50.000 0.00 0.00 0.00 2.57
271 272 0.394352 ACAAAAGCAGGGCGATAGGG 60.394 55.000 0.00 0.00 0.00 3.53
272 273 0.394352 CAAAAGCAGGGCGATAGGGT 60.394 55.000 0.00 0.00 0.00 4.34
273 274 0.107165 AAAAGCAGGGCGATAGGGTC 60.107 55.000 0.00 0.00 0.00 4.46
281 282 4.732106 CGATAGGGTCGTCTTGCC 57.268 61.111 0.00 0.00 45.19 4.52
282 283 2.116383 CGATAGGGTCGTCTTGCCT 58.884 57.895 0.00 0.00 45.19 4.75
283 284 0.249073 CGATAGGGTCGTCTTGCCTG 60.249 60.000 0.00 0.00 45.19 4.85
284 285 1.112113 GATAGGGTCGTCTTGCCTGA 58.888 55.000 0.00 0.00 0.00 3.86
285 286 0.824759 ATAGGGTCGTCTTGCCTGAC 59.175 55.000 0.00 0.00 0.00 3.51
287 288 2.047179 GGTCGTCTTGCCTGACCC 60.047 66.667 0.00 0.00 45.14 4.46
288 289 2.047179 GTCGTCTTGCCTGACCCC 60.047 66.667 1.40 0.00 33.70 4.95
289 290 2.203788 TCGTCTTGCCTGACCCCT 60.204 61.111 1.40 0.00 33.70 4.79
290 291 2.046892 CGTCTTGCCTGACCCCTG 60.047 66.667 1.40 0.00 33.70 4.45
291 292 2.583441 CGTCTTGCCTGACCCCTGA 61.583 63.158 1.40 0.00 33.70 3.86
292 293 1.761174 GTCTTGCCTGACCCCTGAA 59.239 57.895 0.00 0.00 0.00 3.02
293 294 0.110486 GTCTTGCCTGACCCCTGAAA 59.890 55.000 0.00 0.00 0.00 2.69
294 295 1.075601 TCTTGCCTGACCCCTGAAAT 58.924 50.000 0.00 0.00 0.00 2.17
295 296 1.428912 TCTTGCCTGACCCCTGAAATT 59.571 47.619 0.00 0.00 0.00 1.82
296 297 2.158325 TCTTGCCTGACCCCTGAAATTT 60.158 45.455 0.00 0.00 0.00 1.82
297 298 1.923356 TGCCTGACCCCTGAAATTTC 58.077 50.000 11.41 11.41 0.00 2.17
298 299 1.428912 TGCCTGACCCCTGAAATTTCT 59.571 47.619 18.64 0.00 0.00 2.52
299 300 2.647299 TGCCTGACCCCTGAAATTTCTA 59.353 45.455 18.64 5.16 0.00 2.10
300 301 3.075283 TGCCTGACCCCTGAAATTTCTAA 59.925 43.478 18.64 0.00 0.00 2.10
301 302 4.086457 GCCTGACCCCTGAAATTTCTAAA 58.914 43.478 18.64 0.00 0.00 1.85
302 303 4.158579 GCCTGACCCCTGAAATTTCTAAAG 59.841 45.833 18.64 8.18 0.00 1.85
303 304 5.570320 CCTGACCCCTGAAATTTCTAAAGA 58.430 41.667 18.64 0.00 0.00 2.52
304 305 6.010219 CCTGACCCCTGAAATTTCTAAAGAA 58.990 40.000 18.64 0.00 0.00 2.52
305 306 6.071896 CCTGACCCCTGAAATTTCTAAAGAAC 60.072 42.308 18.64 6.34 33.13 3.01
306 307 5.472137 TGACCCCTGAAATTTCTAAAGAACG 59.528 40.000 18.64 2.71 33.13 3.95
307 308 4.765339 ACCCCTGAAATTTCTAAAGAACGG 59.235 41.667 18.64 10.14 33.13 4.44
308 309 5.007682 CCCCTGAAATTTCTAAAGAACGGA 58.992 41.667 18.64 0.00 33.13 4.69
309 310 5.475564 CCCCTGAAATTTCTAAAGAACGGAA 59.524 40.000 18.64 0.00 33.13 4.30
310 311 6.349363 CCCCTGAAATTTCTAAAGAACGGAAG 60.349 42.308 18.64 3.69 33.13 3.46
311 312 6.349363 CCCTGAAATTTCTAAAGAACGGAAGG 60.349 42.308 18.64 11.60 33.13 3.46
312 313 6.349363 CCTGAAATTTCTAAAGAACGGAAGGG 60.349 42.308 18.64 0.00 33.13 3.95
313 314 6.300703 TGAAATTTCTAAAGAACGGAAGGGA 58.699 36.000 18.64 0.00 33.13 4.20
314 315 6.206048 TGAAATTTCTAAAGAACGGAAGGGAC 59.794 38.462 18.64 0.00 33.13 4.46
315 316 4.968971 TTTCTAAAGAACGGAAGGGACT 57.031 40.909 0.00 0.00 34.52 3.85
316 317 4.532314 TTCTAAAGAACGGAAGGGACTC 57.468 45.455 0.00 0.00 38.49 3.36
317 318 2.830321 TCTAAAGAACGGAAGGGACTCC 59.170 50.000 0.00 0.00 38.49 3.85
318 319 0.691332 AAAGAACGGAAGGGACTCCC 59.309 55.000 5.90 5.90 45.90 4.30
334 335 5.892348 GGACTCCCCATTAATATTGATGGT 58.108 41.667 28.21 15.82 41.36 3.55
335 336 5.946377 GGACTCCCCATTAATATTGATGGTC 59.054 44.000 28.21 21.12 41.36 4.02
336 337 5.560724 ACTCCCCATTAATATTGATGGTCG 58.439 41.667 28.21 20.61 41.36 4.79
337 338 5.073144 ACTCCCCATTAATATTGATGGTCGT 59.927 40.000 28.21 20.82 41.36 4.34
338 339 5.556915 TCCCCATTAATATTGATGGTCGTC 58.443 41.667 28.21 0.00 41.36 4.20
339 340 5.309543 TCCCCATTAATATTGATGGTCGTCT 59.690 40.000 28.21 0.00 41.36 4.18
340 341 5.643777 CCCCATTAATATTGATGGTCGTCTC 59.356 44.000 28.21 0.00 41.36 3.36
341 342 6.230472 CCCATTAATATTGATGGTCGTCTCA 58.770 40.000 28.21 0.00 41.36 3.27
342 343 6.147821 CCCATTAATATTGATGGTCGTCTCAC 59.852 42.308 28.21 0.00 41.36 3.51
343 344 6.931281 CCATTAATATTGATGGTCGTCTCACT 59.069 38.462 24.48 0.00 38.95 3.41
344 345 7.095481 CCATTAATATTGATGGTCGTCTCACTG 60.095 40.741 24.48 2.02 38.95 3.66
345 346 2.680312 ATTGATGGTCGTCTCACTGG 57.320 50.000 0.00 0.00 0.00 4.00
346 347 0.037326 TTGATGGTCGTCTCACTGGC 60.037 55.000 0.00 0.00 0.00 4.85
347 348 1.184970 TGATGGTCGTCTCACTGGCA 61.185 55.000 0.00 0.00 0.00 4.92
348 349 0.737715 GATGGTCGTCTCACTGGCAC 60.738 60.000 0.00 0.00 0.00 5.01
349 350 1.471829 ATGGTCGTCTCACTGGCACA 61.472 55.000 0.00 0.00 0.00 4.57
350 351 1.069090 GGTCGTCTCACTGGCACAA 59.931 57.895 0.00 0.00 38.70 3.33
351 352 0.531974 GGTCGTCTCACTGGCACAAA 60.532 55.000 0.00 0.00 38.70 2.83
352 353 0.582005 GTCGTCTCACTGGCACAAAC 59.418 55.000 0.00 0.00 38.70 2.93
353 354 0.531974 TCGTCTCACTGGCACAAACC 60.532 55.000 0.00 0.00 38.70 3.27
354 355 0.813610 CGTCTCACTGGCACAAACCA 60.814 55.000 0.00 0.00 38.70 3.67
355 356 1.388547 GTCTCACTGGCACAAACCAA 58.611 50.000 0.00 0.00 39.86 3.67
356 357 1.748493 GTCTCACTGGCACAAACCAAA 59.252 47.619 0.00 0.00 39.86 3.28
357 358 1.748493 TCTCACTGGCACAAACCAAAC 59.252 47.619 0.00 0.00 39.86 2.93
358 359 1.750778 CTCACTGGCACAAACCAAACT 59.249 47.619 0.00 0.00 39.86 2.66
359 360 1.748493 TCACTGGCACAAACCAAACTC 59.252 47.619 0.00 0.00 39.86 3.01
360 361 1.476085 CACTGGCACAAACCAAACTCA 59.524 47.619 0.00 0.00 39.86 3.41
365 366 5.772672 ACTGGCACAAACCAAACTCATATAA 59.227 36.000 0.00 0.00 39.86 0.98
367 368 5.092781 GGCACAAACCAAACTCATATAACG 58.907 41.667 0.00 0.00 0.00 3.18
392 393 0.956633 TTCGTGCGTAGACCACTTCT 59.043 50.000 0.00 0.00 38.51 2.85
393 394 0.520404 TCGTGCGTAGACCACTTCTC 59.480 55.000 0.00 0.00 35.55 2.87
394 395 0.240145 CGTGCGTAGACCACTTCTCA 59.760 55.000 0.00 0.00 35.55 3.27
395 396 1.135373 CGTGCGTAGACCACTTCTCAT 60.135 52.381 0.00 0.00 35.55 2.90
400 401 3.427243 CGTAGACCACTTCTCATCGAAC 58.573 50.000 0.00 0.00 35.55 3.95
403 404 2.755655 AGACCACTTCTCATCGAACGAT 59.244 45.455 3.80 3.80 34.81 3.73
445 446 0.668535 AACTTTGCTCCAAGGTTCGC 59.331 50.000 0.37 0.00 38.90 4.70
483 484 8.939201 TGTTTTCTATTTCTGTGATTTTGCAA 57.061 26.923 0.00 0.00 0.00 4.08
484 485 9.545105 TGTTTTCTATTTCTGTGATTTTGCAAT 57.455 25.926 0.00 0.00 0.00 3.56
505 508 6.515531 GCAATCTTGTGAATCAAAGAAGGACA 60.516 38.462 10.31 0.00 35.48 4.02
551 554 2.200373 ACCTCAAAACCTTCCATCGG 57.800 50.000 0.00 0.00 0.00 4.18
663 666 3.518634 CTGTAAACTCCAGCTCCTCTC 57.481 52.381 0.00 0.00 0.00 3.20
812 819 1.746615 CCATTGCGGGGTCTGTGAG 60.747 63.158 0.00 0.00 0.00 3.51
960 967 3.396276 TGGTTCCTTGAAATGGGTGTCTA 59.604 43.478 0.00 0.00 0.00 2.59
1026 1035 3.939066 GAAGCAGTTCCTTGGTAAGCTA 58.061 45.455 0.00 0.00 0.00 3.32
1032 1041 0.756903 TCCTTGGTAAGCTATCGGGC 59.243 55.000 0.00 0.00 0.00 6.13
1494 1503 0.392060 TCGTGTACGAGCTGCTCCTA 60.392 55.000 22.97 13.48 44.22 2.94
2123 2132 3.459227 TGTCCCAGGATATCAATCTGCAA 59.541 43.478 4.83 0.00 32.29 4.08
2124 2133 4.105217 TGTCCCAGGATATCAATCTGCAAT 59.895 41.667 4.83 0.00 32.29 3.56
2152 2161 4.744631 CCTATTGCCAGTGTTTGTTGTTTC 59.255 41.667 0.00 0.00 0.00 2.78
2239 2328 8.619546 CAGGGAGTTATTTCAATTGAGAATCTC 58.380 37.037 8.41 12.25 34.92 2.75
2265 2354 4.618227 GCATTCTTGTGGGTGGTATTTGTC 60.618 45.833 0.00 0.00 0.00 3.18
2289 2378 3.937814 TCGAACCAGCATCACATTTACT 58.062 40.909 0.00 0.00 0.00 2.24
2312 2401 6.540189 ACTGCCAAGATATGTTCTGTTGTATC 59.460 38.462 0.00 0.00 33.93 2.24
2364 2453 4.543590 TCCCTTCAGAGATTCTTCACAC 57.456 45.455 0.00 0.00 0.00 3.82
2399 2488 3.704061 GCTATTTAATTGGCCACAAGGGA 59.296 43.478 3.88 0.00 40.49 4.20
2859 2950 5.850046 ATTTCCAAGAGGAGGAAGAGAAA 57.150 39.130 0.00 0.00 46.74 2.52
2861 2952 2.563179 TCCAAGAGGAGGAAGAGAAACG 59.437 50.000 0.00 0.00 39.61 3.60
3059 3150 1.028330 CACTATGGGTGCTGTGCAGG 61.028 60.000 1.11 0.00 40.08 4.85
3060 3151 1.452651 CTATGGGTGCTGTGCAGGG 60.453 63.158 1.11 0.00 40.08 4.45
3061 3152 3.643595 TATGGGTGCTGTGCAGGGC 62.644 63.158 4.11 4.11 40.08 5.19
3064 3155 2.993264 GGTGCTGTGCAGGGCATT 60.993 61.111 15.15 0.00 41.91 3.56
3065 3156 2.576832 GGTGCTGTGCAGGGCATTT 61.577 57.895 15.15 0.00 41.91 2.32
3066 3157 1.368579 GTGCTGTGCAGGGCATTTT 59.631 52.632 15.15 0.00 41.91 1.82
3067 3158 0.947180 GTGCTGTGCAGGGCATTTTG 60.947 55.000 15.15 0.00 41.91 2.44
3068 3159 1.368579 GCTGTGCAGGGCATTTTGT 59.631 52.632 6.02 0.00 41.91 2.83
3069 3160 0.668401 GCTGTGCAGGGCATTTTGTC 60.668 55.000 6.02 0.00 41.91 3.18
3070 3161 0.675083 CTGTGCAGGGCATTTTGTCA 59.325 50.000 0.00 0.00 41.91 3.58
3555 3646 6.662755 ACAAGATAATGCCCAATTCTAGTCA 58.337 36.000 0.00 0.00 0.00 3.41
3622 3713 0.324614 TACAGCTGGTGTCATGTGGG 59.675 55.000 19.93 0.00 40.94 4.61
3681 3772 5.183530 TCTGTTCACCAGATTTGATGGAT 57.816 39.130 0.00 0.00 45.34 3.41
3744 3835 7.095229 GCTTGATAACTCAACTACATTGTGTCA 60.095 37.037 0.00 0.00 42.74 3.58
3755 3846 7.989085 CAACTACATTGTGTCACTTGCTTAGTG 60.989 40.741 11.80 11.80 43.14 2.74
3806 3897 3.941483 AGCATTGCTACATGTTCTGGTAC 59.059 43.478 10.00 0.00 36.99 3.34
3839 3930 5.856156 TGCCAATTCATGACAAGAACATTT 58.144 33.333 0.00 0.00 0.00 2.32
3899 3990 1.967319 TCAAAGTCTTGGCTCCACAC 58.033 50.000 0.00 0.00 33.01 3.82
3920 4011 9.573133 CCACACTGAAAAATGTCCTTATATTTC 57.427 33.333 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.249398 AAGAGCGGGGTGTATGTCAC 59.751 55.000 0.00 0.00 45.47 3.67
6 7 0.981183 AAAGAGCGGGGTGTATGTCA 59.019 50.000 0.00 0.00 0.00 3.58
7 8 1.338769 ACAAAGAGCGGGGTGTATGTC 60.339 52.381 0.00 0.00 0.00 3.06
8 9 0.690762 ACAAAGAGCGGGGTGTATGT 59.309 50.000 0.00 0.00 0.00 2.29
9 10 1.338674 TGACAAAGAGCGGGGTGTATG 60.339 52.381 0.00 0.00 0.00 2.39
10 11 0.981183 TGACAAAGAGCGGGGTGTAT 59.019 50.000 0.00 0.00 0.00 2.29
11 12 0.759959 TTGACAAAGAGCGGGGTGTA 59.240 50.000 0.00 0.00 0.00 2.90
12 13 0.106918 TTTGACAAAGAGCGGGGTGT 60.107 50.000 0.00 0.00 0.00 4.16
13 14 1.028905 TTTTGACAAAGAGCGGGGTG 58.971 50.000 0.10 0.00 0.00 4.61
14 15 1.995376 ATTTTGACAAAGAGCGGGGT 58.005 45.000 0.10 0.00 0.00 4.95
15 16 2.295909 TCAATTTTGACAAAGAGCGGGG 59.704 45.455 0.10 0.00 31.01 5.73
16 17 3.641437 TCAATTTTGACAAAGAGCGGG 57.359 42.857 0.10 0.00 31.01 6.13
17 18 5.464168 AGAATCAATTTTGACAAAGAGCGG 58.536 37.500 0.10 0.00 40.49 5.52
18 19 8.017373 TCTTAGAATCAATTTTGACAAAGAGCG 58.983 33.333 0.10 0.00 40.49 5.03
19 20 9.122613 GTCTTAGAATCAATTTTGACAAAGAGC 57.877 33.333 0.10 0.00 40.49 4.09
20 21 9.617975 GGTCTTAGAATCAATTTTGACAAAGAG 57.382 33.333 0.10 0.00 40.49 2.85
21 22 9.130661 TGGTCTTAGAATCAATTTTGACAAAGA 57.869 29.630 0.10 0.00 40.49 2.52
22 23 9.403110 CTGGTCTTAGAATCAATTTTGACAAAG 57.597 33.333 0.10 0.00 40.49 2.77
23 24 9.130661 TCTGGTCTTAGAATCAATTTTGACAAA 57.869 29.630 0.00 0.00 40.49 2.83
24 25 8.690203 TCTGGTCTTAGAATCAATTTTGACAA 57.310 30.769 0.00 0.00 40.49 3.18
25 26 8.868522 ATCTGGTCTTAGAATCAATTTTGACA 57.131 30.769 0.00 0.00 40.49 3.58
32 33 9.956640 GAATCCATATCTGGTCTTAGAATCAAT 57.043 33.333 0.00 0.00 43.61 2.57
33 34 8.937835 TGAATCCATATCTGGTCTTAGAATCAA 58.062 33.333 0.00 0.00 43.61 2.57
34 35 8.496534 TGAATCCATATCTGGTCTTAGAATCA 57.503 34.615 0.00 0.00 43.61 2.57
35 36 9.784531 TTTGAATCCATATCTGGTCTTAGAATC 57.215 33.333 0.00 0.00 43.61 2.52
37 38 9.396022 GTTTTGAATCCATATCTGGTCTTAGAA 57.604 33.333 0.00 0.00 43.61 2.10
38 39 8.548025 TGTTTTGAATCCATATCTGGTCTTAGA 58.452 33.333 0.00 0.00 43.61 2.10
39 40 8.616076 GTGTTTTGAATCCATATCTGGTCTTAG 58.384 37.037 0.00 0.00 43.61 2.18
40 41 8.106462 TGTGTTTTGAATCCATATCTGGTCTTA 58.894 33.333 0.00 0.00 43.61 2.10
41 42 6.947733 TGTGTTTTGAATCCATATCTGGTCTT 59.052 34.615 0.00 0.00 43.61 3.01
42 43 6.484288 TGTGTTTTGAATCCATATCTGGTCT 58.516 36.000 0.00 0.00 43.61 3.85
43 44 6.757897 TGTGTTTTGAATCCATATCTGGTC 57.242 37.500 0.00 0.00 43.61 4.02
44 45 6.891361 TGATGTGTTTTGAATCCATATCTGGT 59.109 34.615 0.00 0.00 43.61 4.00
45 46 7.337480 TGATGTGTTTTGAATCCATATCTGG 57.663 36.000 0.00 0.00 44.64 3.86
46 47 6.916387 GCTGATGTGTTTTGAATCCATATCTG 59.084 38.462 0.00 0.00 32.62 2.90
47 48 6.604396 TGCTGATGTGTTTTGAATCCATATCT 59.396 34.615 0.00 0.00 30.70 1.98
48 49 6.798482 TGCTGATGTGTTTTGAATCCATATC 58.202 36.000 0.00 0.00 0.00 1.63
49 50 6.183360 CCTGCTGATGTGTTTTGAATCCATAT 60.183 38.462 0.00 0.00 0.00 1.78
50 51 5.125900 CCTGCTGATGTGTTTTGAATCCATA 59.874 40.000 0.00 0.00 0.00 2.74
51 52 4.081862 CCTGCTGATGTGTTTTGAATCCAT 60.082 41.667 0.00 0.00 0.00 3.41
52 53 3.256383 CCTGCTGATGTGTTTTGAATCCA 59.744 43.478 0.00 0.00 0.00 3.41
53 54 3.507233 TCCTGCTGATGTGTTTTGAATCC 59.493 43.478 0.00 0.00 0.00 3.01
54 55 4.771590 TCCTGCTGATGTGTTTTGAATC 57.228 40.909 0.00 0.00 0.00 2.52
55 56 4.586001 AGTTCCTGCTGATGTGTTTTGAAT 59.414 37.500 0.00 0.00 0.00 2.57
56 57 3.953612 AGTTCCTGCTGATGTGTTTTGAA 59.046 39.130 0.00 0.00 0.00 2.69
57 58 3.554934 AGTTCCTGCTGATGTGTTTTGA 58.445 40.909 0.00 0.00 0.00 2.69
58 59 3.996150 AGTTCCTGCTGATGTGTTTTG 57.004 42.857 0.00 0.00 0.00 2.44
59 60 3.953612 TGAAGTTCCTGCTGATGTGTTTT 59.046 39.130 0.00 0.00 0.00 2.43
60 61 3.554934 TGAAGTTCCTGCTGATGTGTTT 58.445 40.909 0.00 0.00 0.00 2.83
61 62 3.144506 CTGAAGTTCCTGCTGATGTGTT 58.855 45.455 0.00 0.00 0.00 3.32
62 63 2.551721 CCTGAAGTTCCTGCTGATGTGT 60.552 50.000 0.00 0.00 0.00 3.72
63 64 2.082231 CCTGAAGTTCCTGCTGATGTG 58.918 52.381 0.00 0.00 0.00 3.21
64 65 1.701847 ACCTGAAGTTCCTGCTGATGT 59.298 47.619 0.00 0.00 0.00 3.06
65 66 2.486472 ACCTGAAGTTCCTGCTGATG 57.514 50.000 0.00 0.00 0.00 3.07
66 67 3.515602 AAACCTGAAGTTCCTGCTGAT 57.484 42.857 0.00 0.00 37.88 2.90
67 68 4.041567 TGATAAACCTGAAGTTCCTGCTGA 59.958 41.667 0.00 0.00 37.88 4.26
68 69 4.326826 TGATAAACCTGAAGTTCCTGCTG 58.673 43.478 0.00 0.00 37.88 4.41
69 70 4.640771 TGATAAACCTGAAGTTCCTGCT 57.359 40.909 0.00 0.00 37.88 4.24
70 71 5.241728 AGTTTGATAAACCTGAAGTTCCTGC 59.758 40.000 0.00 0.00 42.34 4.85
71 72 6.884280 AGTTTGATAAACCTGAAGTTCCTG 57.116 37.500 0.00 0.00 42.34 3.86
72 73 9.232473 GATTAGTTTGATAAACCTGAAGTTCCT 57.768 33.333 0.00 0.00 42.34 3.36
73 74 9.232473 AGATTAGTTTGATAAACCTGAAGTTCC 57.768 33.333 0.00 0.00 42.34 3.62
114 115 9.973450 GGAGTATGTCGATGATATGCTTATTAT 57.027 33.333 0.00 0.00 28.17 1.28
115 116 8.966868 TGGAGTATGTCGATGATATGCTTATTA 58.033 33.333 0.00 0.00 28.17 0.98
116 117 7.840931 TGGAGTATGTCGATGATATGCTTATT 58.159 34.615 0.00 0.00 28.17 1.40
117 118 7.410120 TGGAGTATGTCGATGATATGCTTAT 57.590 36.000 0.00 0.00 28.17 1.73
118 119 6.834168 TGGAGTATGTCGATGATATGCTTA 57.166 37.500 0.00 0.00 28.17 3.09
119 120 5.728637 TGGAGTATGTCGATGATATGCTT 57.271 39.130 0.00 0.00 28.17 3.91
120 121 5.244851 ACTTGGAGTATGTCGATGATATGCT 59.755 40.000 0.00 0.00 30.25 3.79
121 122 5.347093 CACTTGGAGTATGTCGATGATATGC 59.653 44.000 0.00 0.00 0.00 3.14
122 123 6.681777 TCACTTGGAGTATGTCGATGATATG 58.318 40.000 0.00 0.00 0.00 1.78
123 124 6.901081 TCACTTGGAGTATGTCGATGATAT 57.099 37.500 0.00 0.00 0.00 1.63
124 125 6.319141 CTCACTTGGAGTATGTCGATGATA 57.681 41.667 0.00 0.00 38.90 2.15
125 126 5.193663 CTCACTTGGAGTATGTCGATGAT 57.806 43.478 0.00 0.00 38.90 2.45
126 127 4.639135 CTCACTTGGAGTATGTCGATGA 57.361 45.455 0.00 0.00 38.90 2.92
136 137 6.577712 GAAGGGGGTATTACTCACTTGGAGT 61.578 48.000 15.94 2.27 43.66 3.85
137 138 3.780850 AAGGGGGTATTACTCACTTGGAG 59.219 47.826 10.46 0.00 41.65 3.86
138 139 3.502051 AGGGGGTATTACTCACTTGGA 57.498 47.619 0.00 0.00 15.03 3.53
139 140 3.521937 TGAAGGGGGTATTACTCACTTGG 59.478 47.826 15.94 0.00 43.66 3.61
140 141 4.514401 GTGAAGGGGGTATTACTCACTTG 58.486 47.826 15.94 0.00 43.66 3.16
141 142 3.197116 CGTGAAGGGGGTATTACTCACTT 59.803 47.826 11.05 11.05 46.95 3.16
142 143 2.764572 CGTGAAGGGGGTATTACTCACT 59.235 50.000 0.00 0.00 29.99 3.41
143 144 2.762327 TCGTGAAGGGGGTATTACTCAC 59.238 50.000 0.00 0.00 0.00 3.51
144 145 3.104519 TCGTGAAGGGGGTATTACTCA 57.895 47.619 0.00 0.00 0.00 3.41
145 146 3.740452 GCTTCGTGAAGGGGGTATTACTC 60.740 52.174 11.32 0.00 38.80 2.59
146 147 2.169978 GCTTCGTGAAGGGGGTATTACT 59.830 50.000 11.32 0.00 38.80 2.24
147 148 2.169978 AGCTTCGTGAAGGGGGTATTAC 59.830 50.000 11.32 0.00 38.80 1.89
148 149 2.433239 GAGCTTCGTGAAGGGGGTATTA 59.567 50.000 11.32 0.00 38.80 0.98
149 150 1.209747 GAGCTTCGTGAAGGGGGTATT 59.790 52.381 11.32 0.00 38.80 1.89
150 151 0.831307 GAGCTTCGTGAAGGGGGTAT 59.169 55.000 11.32 0.00 38.80 2.73
151 152 0.543410 TGAGCTTCGTGAAGGGGGTA 60.543 55.000 11.32 0.00 38.80 3.69
152 153 1.415672 TTGAGCTTCGTGAAGGGGGT 61.416 55.000 11.32 0.00 38.80 4.95
153 154 0.674895 CTTGAGCTTCGTGAAGGGGG 60.675 60.000 11.32 0.00 38.80 5.40
154 155 0.035458 ACTTGAGCTTCGTGAAGGGG 59.965 55.000 11.32 0.00 38.80 4.79
155 156 1.151668 CACTTGAGCTTCGTGAAGGG 58.848 55.000 11.32 0.00 38.80 3.95
156 157 2.064762 CTCACTTGAGCTTCGTGAAGG 58.935 52.381 11.32 0.00 37.24 3.46
157 158 2.748605 ACTCACTTGAGCTTCGTGAAG 58.251 47.619 6.14 5.24 45.79 3.02
158 159 2.890808 ACTCACTTGAGCTTCGTGAA 57.109 45.000 6.14 1.43 45.79 3.18
159 160 4.521130 ATTACTCACTTGAGCTTCGTGA 57.479 40.909 6.14 11.53 45.79 4.35
160 161 5.062308 GGTTATTACTCACTTGAGCTTCGTG 59.938 44.000 6.14 0.00 45.79 4.35
161 162 5.169295 GGTTATTACTCACTTGAGCTTCGT 58.831 41.667 6.14 0.00 45.79 3.85
162 163 4.567159 GGGTTATTACTCACTTGAGCTTCG 59.433 45.833 6.14 0.00 45.79 3.79
163 164 4.876679 GGGGTTATTACTCACTTGAGCTTC 59.123 45.833 6.14 0.00 45.79 3.86
164 165 4.536489 AGGGGTTATTACTCACTTGAGCTT 59.464 41.667 6.14 0.00 45.79 3.74
165 166 4.104831 AGGGGTTATTACTCACTTGAGCT 58.895 43.478 6.14 0.00 45.79 4.09
166 167 4.489306 AGGGGTTATTACTCACTTGAGC 57.511 45.455 6.14 0.00 45.79 4.26
168 169 6.442541 TCAAAGGGGTTATTACTCACTTGA 57.557 37.500 0.00 0.00 0.00 3.02
169 170 6.659242 ACATCAAAGGGGTTATTACTCACTTG 59.341 38.462 0.00 0.00 0.00 3.16
170 171 6.659242 CACATCAAAGGGGTTATTACTCACTT 59.341 38.462 0.00 0.00 0.00 3.16
171 172 6.012858 TCACATCAAAGGGGTTATTACTCACT 60.013 38.462 0.00 0.00 0.00 3.41
172 173 6.093633 GTCACATCAAAGGGGTTATTACTCAC 59.906 42.308 0.00 0.00 0.00 3.51
173 174 6.177610 GTCACATCAAAGGGGTTATTACTCA 58.822 40.000 0.00 0.00 0.00 3.41
174 175 5.293569 CGTCACATCAAAGGGGTTATTACTC 59.706 44.000 0.00 0.00 0.00 2.59
175 176 5.046159 TCGTCACATCAAAGGGGTTATTACT 60.046 40.000 0.00 0.00 0.00 2.24
176 177 5.180271 TCGTCACATCAAAGGGGTTATTAC 58.820 41.667 0.00 0.00 0.00 1.89
177 178 5.423704 TCGTCACATCAAAGGGGTTATTA 57.576 39.130 0.00 0.00 0.00 0.98
178 179 4.261801 CTCGTCACATCAAAGGGGTTATT 58.738 43.478 0.00 0.00 0.00 1.40
179 180 3.873910 CTCGTCACATCAAAGGGGTTAT 58.126 45.455 0.00 0.00 0.00 1.89
180 181 2.614481 GCTCGTCACATCAAAGGGGTTA 60.614 50.000 0.00 0.00 0.00 2.85
181 182 1.882352 GCTCGTCACATCAAAGGGGTT 60.882 52.381 0.00 0.00 0.00 4.11
182 183 0.321653 GCTCGTCACATCAAAGGGGT 60.322 55.000 0.00 0.00 0.00 4.95
183 184 1.026718 GGCTCGTCACATCAAAGGGG 61.027 60.000 0.00 0.00 0.00 4.79
184 185 0.321564 TGGCTCGTCACATCAAAGGG 60.322 55.000 0.00 0.00 0.00 3.95
185 186 1.667724 GATGGCTCGTCACATCAAAGG 59.332 52.381 9.80 0.00 42.28 3.11
186 187 2.625737 AGATGGCTCGTCACATCAAAG 58.374 47.619 14.74 0.00 44.50 2.77
187 188 2.768253 AGATGGCTCGTCACATCAAA 57.232 45.000 14.74 0.00 44.50 2.69
188 189 2.768253 AAGATGGCTCGTCACATCAA 57.232 45.000 14.74 0.00 44.50 2.57
189 190 2.481969 GCTAAGATGGCTCGTCACATCA 60.482 50.000 14.74 0.00 44.50 3.07
190 191 2.131183 GCTAAGATGGCTCGTCACATC 58.869 52.381 0.00 0.00 42.87 3.06
191 192 1.482182 TGCTAAGATGGCTCGTCACAT 59.518 47.619 0.00 0.00 0.00 3.21
192 193 0.894835 TGCTAAGATGGCTCGTCACA 59.105 50.000 0.00 0.00 0.00 3.58
193 194 1.281899 GTGCTAAGATGGCTCGTCAC 58.718 55.000 0.00 0.00 0.00 3.67
194 195 0.175760 GGTGCTAAGATGGCTCGTCA 59.824 55.000 0.00 0.00 0.00 4.35
195 196 0.461961 AGGTGCTAAGATGGCTCGTC 59.538 55.000 0.00 0.00 0.00 4.20
196 197 0.905357 AAGGTGCTAAGATGGCTCGT 59.095 50.000 0.00 0.00 0.00 4.18
197 198 1.137872 AGAAGGTGCTAAGATGGCTCG 59.862 52.381 0.00 0.00 0.00 5.03
198 199 2.998316 AGAAGGTGCTAAGATGGCTC 57.002 50.000 0.00 0.00 0.00 4.70
199 200 4.033709 TCTTAGAAGGTGCTAAGATGGCT 58.966 43.478 9.17 0.00 46.87 4.75
200 201 4.408182 TCTTAGAAGGTGCTAAGATGGC 57.592 45.455 9.17 0.00 46.87 4.40
205 206 4.742138 GCCCTCATCTTAGAAGGTGCTAAG 60.742 50.000 0.00 0.00 45.51 2.18
206 207 3.134804 GCCCTCATCTTAGAAGGTGCTAA 59.865 47.826 0.00 0.00 37.07 3.09
207 208 2.700897 GCCCTCATCTTAGAAGGTGCTA 59.299 50.000 0.00 0.00 37.07 3.49
208 209 1.488393 GCCCTCATCTTAGAAGGTGCT 59.512 52.381 0.00 0.00 37.07 4.40
209 210 1.475930 GGCCCTCATCTTAGAAGGTGC 60.476 57.143 0.00 3.10 37.07 5.01
210 211 1.839994 TGGCCCTCATCTTAGAAGGTG 59.160 52.381 0.00 0.00 38.51 4.00
211 212 2.270434 TGGCCCTCATCTTAGAAGGT 57.730 50.000 0.00 0.00 0.00 3.50
212 213 3.484407 CATTGGCCCTCATCTTAGAAGG 58.516 50.000 0.00 0.00 0.00 3.46
213 214 2.883386 GCATTGGCCCTCATCTTAGAAG 59.117 50.000 0.00 0.00 0.00 2.85
214 215 2.746142 CGCATTGGCCCTCATCTTAGAA 60.746 50.000 0.00 0.00 36.38 2.10
215 216 1.202687 CGCATTGGCCCTCATCTTAGA 60.203 52.381 0.00 0.00 36.38 2.10
216 217 1.233019 CGCATTGGCCCTCATCTTAG 58.767 55.000 0.00 0.00 36.38 2.18
217 218 0.546122 ACGCATTGGCCCTCATCTTA 59.454 50.000 0.00 0.00 36.38 2.10
218 219 0.749454 GACGCATTGGCCCTCATCTT 60.749 55.000 0.00 0.00 36.38 2.40
219 220 1.153086 GACGCATTGGCCCTCATCT 60.153 57.895 0.00 0.00 36.38 2.90
220 221 2.189499 GGACGCATTGGCCCTCATC 61.189 63.158 0.00 0.00 36.38 2.92
221 222 2.124151 GGACGCATTGGCCCTCAT 60.124 61.111 0.00 0.00 36.38 2.90
222 223 3.645660 TGGACGCATTGGCCCTCA 61.646 61.111 0.00 0.00 36.38 3.86
223 224 3.134127 GTGGACGCATTGGCCCTC 61.134 66.667 0.00 0.00 36.38 4.30
226 227 2.845752 TAGTCGTGGACGCATTGGCC 62.846 60.000 0.00 0.00 37.67 5.36
227 228 0.810031 ATAGTCGTGGACGCATTGGC 60.810 55.000 0.00 0.00 37.67 4.52
228 229 0.930310 CATAGTCGTGGACGCATTGG 59.070 55.000 0.00 0.00 37.67 3.16
229 230 1.640428 ACATAGTCGTGGACGCATTG 58.360 50.000 0.00 0.00 37.67 2.82
230 231 2.380084 AACATAGTCGTGGACGCATT 57.620 45.000 0.00 0.00 37.67 3.56
231 232 3.513680 TTAACATAGTCGTGGACGCAT 57.486 42.857 0.00 0.00 37.67 4.73
232 233 2.988493 GTTTAACATAGTCGTGGACGCA 59.012 45.455 0.00 0.00 37.67 5.24
233 234 2.988493 TGTTTAACATAGTCGTGGACGC 59.012 45.455 0.00 0.00 37.67 5.19
234 235 5.579384 TTTGTTTAACATAGTCGTGGACG 57.421 39.130 0.00 0.00 37.67 4.79
235 236 5.849604 GCTTTTGTTTAACATAGTCGTGGAC 59.150 40.000 0.00 0.00 0.00 4.02
236 237 5.527951 TGCTTTTGTTTAACATAGTCGTGGA 59.472 36.000 0.00 0.00 0.00 4.02
237 238 5.753744 TGCTTTTGTTTAACATAGTCGTGG 58.246 37.500 0.00 0.00 0.00 4.94
238 239 5.851177 CCTGCTTTTGTTTAACATAGTCGTG 59.149 40.000 0.00 0.00 0.00 4.35
239 240 5.048991 CCCTGCTTTTGTTTAACATAGTCGT 60.049 40.000 0.00 0.00 0.00 4.34
240 241 5.390613 CCCTGCTTTTGTTTAACATAGTCG 58.609 41.667 0.00 0.00 0.00 4.18
241 242 5.161358 GCCCTGCTTTTGTTTAACATAGTC 58.839 41.667 0.00 0.00 0.00 2.59
242 243 4.320935 CGCCCTGCTTTTGTTTAACATAGT 60.321 41.667 0.00 0.00 0.00 2.12
243 244 4.083003 TCGCCCTGCTTTTGTTTAACATAG 60.083 41.667 0.00 1.24 0.00 2.23
244 245 3.821600 TCGCCCTGCTTTTGTTTAACATA 59.178 39.130 0.00 0.00 0.00 2.29
245 246 2.625790 TCGCCCTGCTTTTGTTTAACAT 59.374 40.909 0.00 0.00 0.00 2.71
246 247 2.025155 TCGCCCTGCTTTTGTTTAACA 58.975 42.857 0.00 0.00 0.00 2.41
247 248 2.785713 TCGCCCTGCTTTTGTTTAAC 57.214 45.000 0.00 0.00 0.00 2.01
248 249 3.442273 CCTATCGCCCTGCTTTTGTTTAA 59.558 43.478 0.00 0.00 0.00 1.52
249 250 3.013921 CCTATCGCCCTGCTTTTGTTTA 58.986 45.455 0.00 0.00 0.00 2.01
250 251 1.818674 CCTATCGCCCTGCTTTTGTTT 59.181 47.619 0.00 0.00 0.00 2.83
251 252 1.463674 CCTATCGCCCTGCTTTTGTT 58.536 50.000 0.00 0.00 0.00 2.83
252 253 0.394352 CCCTATCGCCCTGCTTTTGT 60.394 55.000 0.00 0.00 0.00 2.83
253 254 0.394352 ACCCTATCGCCCTGCTTTTG 60.394 55.000 0.00 0.00 0.00 2.44
254 255 0.107165 GACCCTATCGCCCTGCTTTT 60.107 55.000 0.00 0.00 0.00 2.27
255 256 1.527370 GACCCTATCGCCCTGCTTT 59.473 57.895 0.00 0.00 0.00 3.51
256 257 2.797278 CGACCCTATCGCCCTGCTT 61.797 63.158 0.00 0.00 45.52 3.91
257 258 3.227276 CGACCCTATCGCCCTGCT 61.227 66.667 0.00 0.00 45.52 4.24
265 266 1.112113 TCAGGCAAGACGACCCTATC 58.888 55.000 0.00 0.00 0.00 2.08
266 267 0.824759 GTCAGGCAAGACGACCCTAT 59.175 55.000 0.00 0.00 0.00 2.57
267 268 1.255667 GGTCAGGCAAGACGACCCTA 61.256 60.000 5.88 0.00 42.87 3.53
268 269 2.584391 GGTCAGGCAAGACGACCCT 61.584 63.158 5.88 0.00 42.87 4.34
269 270 2.047179 GGTCAGGCAAGACGACCC 60.047 66.667 5.88 0.00 42.87 4.46
271 272 2.047179 GGGGTCAGGCAAGACGAC 60.047 66.667 0.00 0.00 39.42 4.34
272 273 2.203788 AGGGGTCAGGCAAGACGA 60.204 61.111 0.00 0.00 39.42 4.20
273 274 2.046892 CAGGGGTCAGGCAAGACG 60.047 66.667 4.39 0.00 39.42 4.18
274 275 0.110486 TTTCAGGGGTCAGGCAAGAC 59.890 55.000 1.92 1.92 37.80 3.01
275 276 1.075601 ATTTCAGGGGTCAGGCAAGA 58.924 50.000 0.00 0.00 0.00 3.02
276 277 1.928868 AATTTCAGGGGTCAGGCAAG 58.071 50.000 0.00 0.00 0.00 4.01
277 278 2.158325 AGAAATTTCAGGGGTCAGGCAA 60.158 45.455 19.99 0.00 0.00 4.52
278 279 1.428912 AGAAATTTCAGGGGTCAGGCA 59.571 47.619 19.99 0.00 0.00 4.75
279 280 2.222227 AGAAATTTCAGGGGTCAGGC 57.778 50.000 19.99 0.00 0.00 4.85
280 281 5.570320 TCTTTAGAAATTTCAGGGGTCAGG 58.430 41.667 19.99 1.39 0.00 3.86
281 282 6.348540 CGTTCTTTAGAAATTTCAGGGGTCAG 60.349 42.308 19.99 6.18 35.58 3.51
282 283 5.472137 CGTTCTTTAGAAATTTCAGGGGTCA 59.528 40.000 19.99 0.00 35.58 4.02
283 284 5.106277 CCGTTCTTTAGAAATTTCAGGGGTC 60.106 44.000 19.99 4.51 35.58 4.46
284 285 4.765339 CCGTTCTTTAGAAATTTCAGGGGT 59.235 41.667 19.99 1.71 35.58 4.95
285 286 5.007682 TCCGTTCTTTAGAAATTTCAGGGG 58.992 41.667 19.99 10.66 35.58 4.79
286 287 6.349363 CCTTCCGTTCTTTAGAAATTTCAGGG 60.349 42.308 19.99 12.37 35.58 4.45
287 288 6.349363 CCCTTCCGTTCTTTAGAAATTTCAGG 60.349 42.308 19.99 12.13 35.58 3.86
288 289 6.430000 TCCCTTCCGTTCTTTAGAAATTTCAG 59.570 38.462 19.99 9.04 35.58 3.02
289 290 6.206048 GTCCCTTCCGTTCTTTAGAAATTTCA 59.794 38.462 19.99 3.83 35.58 2.69
290 291 6.430308 AGTCCCTTCCGTTCTTTAGAAATTTC 59.570 38.462 10.33 10.33 35.58 2.17
291 292 6.304624 AGTCCCTTCCGTTCTTTAGAAATTT 58.695 36.000 0.00 0.00 35.58 1.82
292 293 5.877491 AGTCCCTTCCGTTCTTTAGAAATT 58.123 37.500 0.00 0.00 35.58 1.82
293 294 5.489249 GAGTCCCTTCCGTTCTTTAGAAAT 58.511 41.667 0.00 0.00 35.58 2.17
294 295 4.262765 GGAGTCCCTTCCGTTCTTTAGAAA 60.263 45.833 0.00 0.00 35.58 2.52
295 296 3.260128 GGAGTCCCTTCCGTTCTTTAGAA 59.740 47.826 0.00 0.00 0.00 2.10
296 297 2.830321 GGAGTCCCTTCCGTTCTTTAGA 59.170 50.000 0.00 0.00 0.00 2.10
297 298 2.093606 GGGAGTCCCTTCCGTTCTTTAG 60.094 54.545 22.04 0.00 41.34 1.85
298 299 1.904537 GGGAGTCCCTTCCGTTCTTTA 59.095 52.381 22.04 0.00 41.34 1.85
299 300 0.691332 GGGAGTCCCTTCCGTTCTTT 59.309 55.000 22.04 0.00 41.34 2.52
300 301 2.373921 GGGAGTCCCTTCCGTTCTT 58.626 57.895 22.04 0.00 41.34 2.52
301 302 4.131932 GGGAGTCCCTTCCGTTCT 57.868 61.111 22.04 0.00 41.34 3.01
311 312 5.892348 ACCATCAATATTAATGGGGAGTCC 58.108 41.667 19.91 0.00 45.59 3.85
312 313 5.643777 CGACCATCAATATTAATGGGGAGTC 59.356 44.000 19.91 8.72 45.59 3.36
313 314 5.073144 ACGACCATCAATATTAATGGGGAGT 59.927 40.000 19.91 13.57 45.59 3.85
314 315 5.560724 ACGACCATCAATATTAATGGGGAG 58.439 41.667 19.91 13.03 45.59 4.30
315 316 5.309543 AGACGACCATCAATATTAATGGGGA 59.690 40.000 19.91 0.00 45.59 4.81
316 317 5.560724 AGACGACCATCAATATTAATGGGG 58.439 41.667 19.91 13.87 45.59 4.96
317 318 6.147821 GTGAGACGACCATCAATATTAATGGG 59.852 42.308 19.91 7.32 45.59 4.00
318 319 6.931281 AGTGAGACGACCATCAATATTAATGG 59.069 38.462 15.18 15.18 46.53 3.16
319 320 7.095481 CCAGTGAGACGACCATCAATATTAATG 60.095 40.741 0.00 0.00 0.00 1.90
320 321 6.931281 CCAGTGAGACGACCATCAATATTAAT 59.069 38.462 0.00 0.00 0.00 1.40
321 322 6.280643 CCAGTGAGACGACCATCAATATTAA 58.719 40.000 0.00 0.00 0.00 1.40
322 323 5.739070 GCCAGTGAGACGACCATCAATATTA 60.739 44.000 0.00 0.00 0.00 0.98
323 324 4.697514 CCAGTGAGACGACCATCAATATT 58.302 43.478 0.00 0.00 0.00 1.28
324 325 3.493350 GCCAGTGAGACGACCATCAATAT 60.493 47.826 0.00 0.00 0.00 1.28
325 326 2.159099 GCCAGTGAGACGACCATCAATA 60.159 50.000 0.00 0.00 0.00 1.90
326 327 1.406069 GCCAGTGAGACGACCATCAAT 60.406 52.381 0.00 0.00 0.00 2.57
327 328 0.037326 GCCAGTGAGACGACCATCAA 60.037 55.000 0.00 0.00 0.00 2.57
328 329 1.184970 TGCCAGTGAGACGACCATCA 61.185 55.000 0.00 0.00 0.00 3.07
329 330 0.737715 GTGCCAGTGAGACGACCATC 60.738 60.000 0.00 0.00 0.00 3.51
330 331 1.293498 GTGCCAGTGAGACGACCAT 59.707 57.895 0.00 0.00 0.00 3.55
331 332 1.681486 TTGTGCCAGTGAGACGACCA 61.681 55.000 0.00 0.00 0.00 4.02
332 333 0.531974 TTTGTGCCAGTGAGACGACC 60.532 55.000 0.00 0.00 0.00 4.79
333 334 0.582005 GTTTGTGCCAGTGAGACGAC 59.418 55.000 0.00 0.00 0.00 4.34
334 335 0.531974 GGTTTGTGCCAGTGAGACGA 60.532 55.000 0.00 0.00 0.00 4.20
335 336 0.813610 TGGTTTGTGCCAGTGAGACG 60.814 55.000 0.00 0.00 33.97 4.18
336 337 1.388547 TTGGTTTGTGCCAGTGAGAC 58.611 50.000 0.00 0.00 40.01 3.36
337 338 1.748493 GTTTGGTTTGTGCCAGTGAGA 59.252 47.619 0.00 0.00 40.01 3.27
338 339 1.750778 AGTTTGGTTTGTGCCAGTGAG 59.249 47.619 0.00 0.00 40.01 3.51
339 340 1.748493 GAGTTTGGTTTGTGCCAGTGA 59.252 47.619 0.00 0.00 40.01 3.41
340 341 1.476085 TGAGTTTGGTTTGTGCCAGTG 59.524 47.619 0.00 0.00 40.01 3.66
341 342 1.846007 TGAGTTTGGTTTGTGCCAGT 58.154 45.000 0.00 0.00 40.01 4.00
342 343 4.789012 ATATGAGTTTGGTTTGTGCCAG 57.211 40.909 0.00 0.00 40.01 4.85
343 344 5.335269 CGTTATATGAGTTTGGTTTGTGCCA 60.335 40.000 0.00 0.00 36.62 4.92
344 345 5.092781 CGTTATATGAGTTTGGTTTGTGCC 58.907 41.667 0.00 0.00 0.00 5.01
345 346 4.557301 GCGTTATATGAGTTTGGTTTGTGC 59.443 41.667 0.00 0.00 0.00 4.57
346 347 5.694816 TGCGTTATATGAGTTTGGTTTGTG 58.305 37.500 0.00 0.00 0.00 3.33
347 348 5.950758 TGCGTTATATGAGTTTGGTTTGT 57.049 34.783 0.00 0.00 0.00 2.83
348 349 6.806249 ACAATGCGTTATATGAGTTTGGTTTG 59.194 34.615 0.00 0.00 0.00 2.93
349 350 6.919721 ACAATGCGTTATATGAGTTTGGTTT 58.080 32.000 0.00 0.00 0.00 3.27
350 351 6.509418 ACAATGCGTTATATGAGTTTGGTT 57.491 33.333 0.00 0.00 0.00 3.67
351 352 6.509418 AACAATGCGTTATATGAGTTTGGT 57.491 33.333 0.00 0.00 35.52 3.67
352 353 5.676744 CGAACAATGCGTTATATGAGTTTGG 59.323 40.000 0.00 0.00 38.19 3.28
353 354 6.192682 CACGAACAATGCGTTATATGAGTTTG 59.807 38.462 0.00 0.00 40.44 2.93
354 355 6.247903 CACGAACAATGCGTTATATGAGTTT 58.752 36.000 0.00 0.00 40.44 2.66
355 356 5.726688 GCACGAACAATGCGTTATATGAGTT 60.727 40.000 0.00 0.00 40.44 3.01
356 357 4.260212 GCACGAACAATGCGTTATATGAGT 60.260 41.667 0.00 0.00 40.44 3.41
357 358 4.203828 GCACGAACAATGCGTTATATGAG 58.796 43.478 0.00 0.00 40.44 2.90
358 359 4.190304 GCACGAACAATGCGTTATATGA 57.810 40.909 0.00 0.00 40.44 2.15
367 368 0.094730 GGTCTACGCACGAACAATGC 59.905 55.000 0.00 0.00 39.81 3.56
410 411 1.774110 AGTTGGTTGCCATGTCACAA 58.226 45.000 0.00 0.00 31.53 3.33
445 446 8.230486 AGAAATAGAAAACAGAAATGTAGTGCG 58.770 33.333 0.00 0.00 0.00 5.34
483 484 6.429385 GTCTGTCCTTCTTTGATTCACAAGAT 59.571 38.462 10.20 0.00 39.77 2.40
484 485 5.760253 GTCTGTCCTTCTTTGATTCACAAGA 59.240 40.000 7.00 7.00 39.77 3.02
505 508 4.576463 GTGTGGTCTGAACAGAAAATGTCT 59.424 41.667 6.08 0.00 43.00 3.41
516 519 1.865340 GAGGTTTCGTGTGGTCTGAAC 59.135 52.381 0.00 0.00 0.00 3.18
551 554 2.859165 TTGGATTCCCATCTATCGCC 57.141 50.000 0.00 0.00 43.12 5.54
1428 1437 1.297451 GAACGGATCGTCCTCGTCG 60.297 63.158 0.00 0.00 39.99 5.12
2123 2132 7.779798 ACAACAAACACTGGCAATAGGATATAT 59.220 33.333 0.00 0.00 0.00 0.86
2124 2133 7.116075 ACAACAAACACTGGCAATAGGATATA 58.884 34.615 0.00 0.00 0.00 0.86
2181 2190 6.822442 TGAGTGTTCTGACAACCAACTATAA 58.178 36.000 0.00 0.00 37.57 0.98
2239 2328 1.331214 ACCACCCACAAGAATGCAAG 58.669 50.000 0.00 0.00 0.00 4.01
2265 2354 3.837213 AATGTGATGCTGGTTCGAAAG 57.163 42.857 0.00 0.00 0.00 2.62
2289 2378 5.822519 GGATACAACAGAACATATCTTGGCA 59.177 40.000 0.00 0.00 35.73 4.92
2364 2453 7.383300 GCCAATTAAATAGCAGCTAAATCCAAG 59.617 37.037 6.13 0.00 0.00 3.61
2399 2488 6.238842 GCATTGGTGTGATTACTCAGCATTAT 60.239 38.462 0.00 0.00 43.78 1.28
2497 2588 4.610007 CGCATATAAGTGTTCTGCATCTGC 60.610 45.833 0.00 0.00 42.50 4.26
2505 2596 2.549754 GCATGGCGCATATAAGTGTTCT 59.450 45.455 10.83 0.00 41.79 3.01
2859 2950 3.288308 CTCCTCAGTTGCGGCTCGT 62.288 63.158 0.00 0.00 0.00 4.18
2861 2952 2.817396 GCTCCTCAGTTGCGGCTC 60.817 66.667 0.00 0.00 0.00 4.70
3434 3525 5.941948 AATTACAGACTTTGAAACGAGGG 57.058 39.130 0.00 0.00 0.00 4.30
3502 3593 7.000472 AGAAAGAAATGTCCATCACTTGAGAA 59.000 34.615 0.00 0.00 0.00 2.87
3622 3713 4.857037 GGAAAATTCGAAATACACTGGCAC 59.143 41.667 0.00 0.00 0.00 5.01
3681 3772 4.072131 GGACTTACCTCATTGTTTGCTCA 58.928 43.478 0.00 0.00 35.41 4.26
3744 3835 6.825721 CAGATTTCCTATTCCACTAAGCAAGT 59.174 38.462 0.00 0.00 39.81 3.16
3755 3846 6.655003 TGTGTGAAGTTCAGATTTCCTATTCC 59.345 38.462 5.62 0.00 0.00 3.01
3839 3930 7.636579 AGGCATATCATCCTTAATTATGCAGA 58.363 34.615 13.36 0.00 40.16 4.26
3859 3950 9.976511 CTTTGATATTTATCATGTCAAAGGCAT 57.023 29.630 18.96 5.84 45.36 4.40
3968 4059 6.795590 TGACAATGAAGGGGAATAAAGGTAA 58.204 36.000 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.