AutoCloner

Multiple sequence alignment - TraesCS1D01G119000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G119000	chr1D	100.000	3479	0	0	1	3479	114644754	114648232	0.000000e+00	6425.0
1	TraesCS1D01G119000	chr1D	81.219	1411	257	8	1018	2424	114391934	114390528	0.000000e+00	1131.0
2	TraesCS1D01G119000	chr1D	90.385	52	2	2	2485	2535	414276718	414276669	8.060000e-07	65.8
3	TraesCS1D01G119000	chr1A	93.899	1967	78	11	653	2581	125149903	125151865	0.000000e+00	2929.0
4	TraesCS1D01G119000	chr1A	81.356	1416	249	14	1018	2424	125110543	125109134	0.000000e+00	1138.0
5	TraesCS1D01G119000	chr1A	80.888	1397	236	27	1003	2384	569255695	569257075	0.000000e+00	1072.0
6	TraesCS1D01G119000	chr1A	94.100	339	17	3	1	337	125147831	125148168	2.390000e-141	512.0
7	TraesCS1D01G119000	chr1A	82.072	251	8	15	358	605	125148155	125148371	2.760000e-41	180.0
8	TraesCS1D01G119000	chr1B	93.120	1933	89	13	677	2569	175660795	175662723	0.000000e+00	2793.0
9	TraesCS1D01G119000	chr1B	86.710	617	34	19	1	605	175660031	175660611	2.930000e-180	641.0
10	TraesCS1D01G119000	chr1B	92.857	42	3	0	2487	2528	349838694	349838735	1.040000e-05	62.1
11	TraesCS1D01G119000	chr1B	97.222	36	0	1	650	685	175660713	175660747	3.750000e-05	60.2
12	TraesCS1D01G119000	chr4D	97.778	900	19	1	2581	3479	20524745	20523846	0.000000e+00	1550.0
13	TraesCS1D01G119000	chr5D	97.558	901	20	2	2580	3479	469267555	469266656	0.000000e+00	1541.0
14	TraesCS1D01G119000	chr5D	97.114	901	23	3	2581	3479	496973337	496972438	0.000000e+00	1517.0
15	TraesCS1D01G119000	chr5D	82.921	1253	194	15	1006	2245	545112895	545111650	0.000000e+00	1110.0
16	TraesCS1D01G119000	chr5D	80.601	1397	247	20	1006	2386	544896746	544895358	0.000000e+00	1057.0
17	TraesCS1D01G119000	chr3D	97.238	905	22	3	2577	3479	442147279	442148182	0.000000e+00	1530.0
18	TraesCS1D01G119000	chr3D	97.222	900	23	2	2581	3479	557588973	557588075	0.000000e+00	1522.0
19	TraesCS1D01G119000	chr3D	97.003	901	19	4	2581	3479	601997629	601996735	0.000000e+00	1507.0
20	TraesCS1D01G119000	chr3D	96.556	900	30	1	2581	3479	460246114	460245215	0.000000e+00	1489.0
21	TraesCS1D01G119000	chr2D	96.796	905	23	2	2580	3479	639962824	639961921	0.000000e+00	1506.0
22	TraesCS1D01G119000	chr2D	85.185	54	7	1	2465	2517	457256903	457256850	2.000000e-03	54.7
23	TraesCS1D01G119000	chr7D	96.354	905	30	3	2577	3479	486896182	486897085	0.000000e+00	1485.0
24	TraesCS1D01G119000	chr7D	84.706	85	10	3	2486	2570	575901802	575901883	8.000000e-12	82.4
25	TraesCS1D01G119000	chr7D	81.176	85	13	2	2458	2539	117242230	117242314	8.060000e-07	65.8
26	TraesCS1D01G119000	chr5A	82.145	1417	242	10	995	2404	624708260	624706848	0.000000e+00	1205.0
27	TraesCS1D01G119000	chr4A	81.062	1394	233	25	1006	2384	624834615	624833238	0.000000e+00	1083.0
28	TraesCS1D01G119000	chr2A	85.542	83	6	6	2490	2570	598157959	598157881	8.000000e-12	82.4
29	TraesCS1D01G119000	chr7A	89.091	55	4	2	2486	2540	611499825	611499877	2.240000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G119000	chr1D	114644754	114648232	3478	False	6425.000000	6425	100.000000	1	3479	1	chr1D.!!$F1	3478
1	TraesCS1D01G119000	chr1D	114390528	114391934	1406	True	1131.000000	1131	81.219000	1018	2424	1	chr1D.!!$R1	1406
2	TraesCS1D01G119000	chr1A	125147831	125151865	4034	False	1207.000000	2929	90.023667	1	2581	3	chr1A.!!$F2	2580
3	TraesCS1D01G119000	chr1A	125109134	125110543	1409	True	1138.000000	1138	81.356000	1018	2424	1	chr1A.!!$R1	1406
4	TraesCS1D01G119000	chr1A	569255695	569257075	1380	False	1072.000000	1072	80.888000	1003	2384	1	chr1A.!!$F1	1381
5	TraesCS1D01G119000	chr1B	175660031	175662723	2692	False	1164.733333	2793	92.350667	1	2569	3	chr1B.!!$F2	2568
6	TraesCS1D01G119000	chr4D	20523846	20524745	899	True	1550.000000	1550	97.778000	2581	3479	1	chr4D.!!$R1	898
7	TraesCS1D01G119000	chr5D	469266656	469267555	899	True	1541.000000	1541	97.558000	2580	3479	1	chr5D.!!$R1	899
8	TraesCS1D01G119000	chr5D	496972438	496973337	899	True	1517.000000	1517	97.114000	2581	3479	1	chr5D.!!$R2	898
9	TraesCS1D01G119000	chr5D	545111650	545112895	1245	True	1110.000000	1110	82.921000	1006	2245	1	chr5D.!!$R4	1239
10	TraesCS1D01G119000	chr5D	544895358	544896746	1388	True	1057.000000	1057	80.601000	1006	2386	1	chr5D.!!$R3	1380
11	TraesCS1D01G119000	chr3D	442147279	442148182	903	False	1530.000000	1530	97.238000	2577	3479	1	chr3D.!!$F1	902
12	TraesCS1D01G119000	chr3D	557588075	557588973	898	True	1522.000000	1522	97.222000	2581	3479	1	chr3D.!!$R2	898
13	TraesCS1D01G119000	chr3D	601996735	601997629	894	True	1507.000000	1507	97.003000	2581	3479	1	chr3D.!!$R3	898
14	TraesCS1D01G119000	chr3D	460245215	460246114	899	True	1489.000000	1489	96.556000	2581	3479	1	chr3D.!!$R1	898
15	TraesCS1D01G119000	chr2D	639961921	639962824	903	True	1506.000000	1506	96.796000	2580	3479	1	chr2D.!!$R2	899
16	TraesCS1D01G119000	chr7D	486896182	486897085	903	False	1485.000000	1485	96.354000	2577	3479	1	chr7D.!!$F2	902
17	TraesCS1D01G119000	chr5A	624706848	624708260	1412	True	1205.000000	1205	82.145000	995	2404	1	chr5A.!!$R1	1409
18	TraesCS1D01G119000	chr4A	624833238	624834615	1377	True	1083.000000	1083	81.062000	1006	2384	1	chr4A.!!$R1	1378

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
702	2281	0.65416	CGCATGCGTCATCACAGAAT	59.346	50.000	31.33	0.0	34.35	2.40	F
924	2518	1.00243	TGCACCTCGAGATGCTTCTTT	59.998	47.619	31.15	0.0	42.55	2.52	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2167	3804	0.386352	CCAAGCACGTCGACGACTAA	60.386	55.0	41.52	0.0	43.02	2.24	R
2742	4389	0.538516	CCGATTTGTCCCACCAACCA	60.539	55.0	0.00	0.0	0.00	3.67	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
165	166	2.036733	CGGAAGGTATTCATAGCGGGAA	59.963	50.000	0.00	0.00	37.15	3.97
311	312	5.887754	AGCTTATTTAGGAAGGGAACACAA	58.112	37.500	0.00	0.00	0.00	3.33
346	380	8.083462	GGTTTTCCTTCCATATTTTTGAACAC	57.917	34.615	0.00	0.00	36.94	3.32
347	381	7.713073	GGTTTTCCTTCCATATTTTTGAACACA	59.287	33.333	0.00	0.00	36.94	3.72
348	382	8.764287	GTTTTCCTTCCATATTTTTGAACACAG	58.236	33.333	0.00	0.00	0.00	3.66
349	383	7.595819	TTCCTTCCATATTTTTGAACACAGT	57.404	32.000	0.00	0.00	0.00	3.55
350	384	6.980593	TCCTTCCATATTTTTGAACACAGTG	58.019	36.000	0.00	0.00	0.00	3.66
351	385	5.634859	CCTTCCATATTTTTGAACACAGTGC	59.365	40.000	0.00	0.00	0.00	4.40
352	386	5.781210	TCCATATTTTTGAACACAGTGCA	57.219	34.783	0.00	0.00	0.00	4.57
353	387	5.771469	TCCATATTTTTGAACACAGTGCAG	58.229	37.500	0.00	0.00	0.00	4.41
354	388	5.534278	TCCATATTTTTGAACACAGTGCAGA	59.466	36.000	0.00	0.00	0.00	4.26
355	389	5.860182	CCATATTTTTGAACACAGTGCAGAG	59.140	40.000	0.00	0.00	0.00	3.35
356	390	3.781079	TTTTTGAACACAGTGCAGAGG	57.219	42.857	0.00	0.00	0.00	3.69
357	391	2.418368	TTTGAACACAGTGCAGAGGT	57.582	45.000	0.00	0.00	0.00	3.85
358	392	2.418368	TTGAACACAGTGCAGAGGTT	57.582	45.000	0.00	0.00	0.00	3.50
359	393	2.418368	TGAACACAGTGCAGAGGTTT	57.582	45.000	0.00	0.00	0.00	3.27
360	394	2.722094	TGAACACAGTGCAGAGGTTTT	58.278	42.857	0.00	0.00	0.00	2.43
421	455	3.373849	GGTAAATGGAACGCGTGTTTTT	58.626	40.909	14.98	14.41	38.78	1.94
521	561	9.244292	GTCATCCACCTGTTGAGTCTATATATA	57.756	37.037	0.00	0.00	0.00	0.86
522	562	9.997172	TCATCCACCTGTTGAGTCTATATATAT	57.003	33.333	0.00	0.00	0.00	0.86
555	595	1.743996	CCAGCAGGGAAAGTAGAAGC	58.256	55.000	0.00	0.00	40.01	3.86
581	621	4.330944	AACAACGAGGACACAAGATGTA	57.669	40.909	0.00	0.00	43.56	2.29
645	707	1.668151	GAGTGGTGCCGGTCACTTC	60.668	63.158	22.54	16.76	43.41	3.01
702	2281	0.654160	CGCATGCGTCATCACAGAAT	59.346	50.000	31.33	0.00	34.35	2.40
738	2317	1.736032	CGCTAGCTACTTCGGTGCTTT	60.736	52.381	13.93	0.00	35.30	3.51
830	2424	3.541831	CGCGCTAATGCACGTCGT	61.542	61.111	5.56	0.00	39.56	4.34
924	2518	1.002430	TGCACCTCGAGATGCTTCTTT	59.998	47.619	31.15	0.00	42.55	2.52
926	2520	2.005451	CACCTCGAGATGCTTCTTTGG	58.995	52.381	15.71	8.74	30.30	3.28
954	2574	3.245016	ACCTCCGACGGGTACATATATGA	60.245	47.826	19.63	0.49	35.00	2.15
959	2579	3.857665	CGACGGGTACATATATGACATGC	59.142	47.826	19.63	0.79	0.00	4.06
1663	3292	2.167918	GCTTCGTCGTCAACACGC	59.832	61.111	0.00	0.00	46.28	5.34
1966	3603	4.796231	CCAAGGAGGGCGACGACG	62.796	72.222	2.12	2.12	42.93	5.12
2106	3743	4.521559	TCCACGCTGGAGTCTCTT	57.478	55.556	0.00	0.00	42.67	2.85
2167	3804	2.036089	GACCAGTTCCTGAACGAGAAGT	59.964	50.000	4.49	0.13	45.50	3.01
2359	3999	3.764466	CAGCGAAGGCGAGGGAGT	61.764	66.667	0.00	0.00	46.35	3.85
2436	4076	3.680642	GCAGAGCTTGCGAATAATGAA	57.319	42.857	5.35	0.00	44.09	2.57
2463	4109	6.595716	AGGATGAAGTTGTGTCTAATACAAGC	59.404	38.462	0.00	0.00	40.63	4.01
2468	4114	2.967362	TGTGTCTAATACAAGCGTGGG	58.033	47.619	4.26	0.00	40.63	4.61
2480	4126	3.195661	CAAGCGTGGGTAGGTCTTAATC	58.804	50.000	0.00	0.00	0.00	1.75
2483	4130	3.069729	AGCGTGGGTAGGTCTTAATCATC	59.930	47.826	0.00	0.00	0.00	2.92
2571	4218	9.474920	AAAAAGAAATTTTTGCATGTATCTCGA	57.525	25.926	0.00	0.00	38.02	4.04
2572	4219	9.474920	AAAAGAAATTTTTGCATGTATCTCGAA	57.525	25.926	0.00	0.00	0.00	3.71
2573	4220	8.679288	AAGAAATTTTTGCATGTATCTCGAAG	57.321	30.769	0.00	0.00	0.00	3.79
2574	4221	8.044060	AGAAATTTTTGCATGTATCTCGAAGA	57.956	30.769	0.00	0.00	0.00	2.87
2575	4222	8.514594	AGAAATTTTTGCATGTATCTCGAAGAA	58.485	29.630	0.00	0.00	34.09	2.52
2637	4284	3.773418	TTCACATTAGTCCCGGTTCAA	57.227	42.857	0.00	0.00	0.00	2.69
2742	4389	4.995058	TCCGGCCCCTTTGGACCT	62.995	66.667	0.00	0.00	40.14	3.85
3044	4692	5.990668	AGGTTGAATTTTCTCTATAGGCGT	58.009	37.500	0.00	0.00	0.00	5.68
3361	5023	4.900684	TGAATACGACTTGAAACCCATCA	58.099	39.130	0.00	0.00	0.00	3.07
3451	5113	1.447489	CCTGCAGTTGAGAGGAGCG	60.447	63.158	13.81	0.00	0.00	5.03

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
83	84	3.256879	ACACACAAACATGAAACACACCA	59.743	39.130	0.00	0.00	0.00	4.17
90	91	4.808414	TTCCCAACACACAAACATGAAA	57.192	36.364	0.00	0.00	0.00	2.69
176	177	2.044252	CAGATTGCCTGCCTGCCT	60.044	61.111	0.00	0.00	35.89	4.75
199	200	2.283173	CCTGCCCCCTTTCACACC	60.283	66.667	0.00	0.00	0.00	4.16
311	312	4.874199	TGGAAGGAAAACCTGGTTAAACT	58.126	39.130	13.37	8.14	0.00	2.66
335	369	3.701040	ACCTCTGCACTGTGTTCAAAAAT	59.299	39.130	9.86	0.00	0.00	1.82
336	370	3.088532	ACCTCTGCACTGTGTTCAAAAA	58.911	40.909	9.86	0.00	0.00	1.94
337	371	2.722094	ACCTCTGCACTGTGTTCAAAA	58.278	42.857	9.86	0.00	0.00	2.44
338	372	2.418368	ACCTCTGCACTGTGTTCAAA	57.582	45.000	9.86	0.00	0.00	2.69
339	373	2.418368	AACCTCTGCACTGTGTTCAA	57.582	45.000	9.86	0.00	0.00	2.69
340	374	2.418368	AAACCTCTGCACTGTGTTCA	57.582	45.000	9.86	0.00	0.00	3.18
341	375	2.033424	GGAAAACCTCTGCACTGTGTTC	59.967	50.000	9.86	2.66	0.00	3.18
342	376	2.024414	GGAAAACCTCTGCACTGTGTT	58.976	47.619	9.86	0.00	0.00	3.32
343	377	1.212935	AGGAAAACCTCTGCACTGTGT	59.787	47.619	9.86	0.00	0.00	3.72
344	378	1.972872	AGGAAAACCTCTGCACTGTG	58.027	50.000	2.76	2.76	0.00	3.66
345	379	2.576615	GAAGGAAAACCTCTGCACTGT	58.423	47.619	0.00	0.00	0.00	3.55
346	380	1.882623	GGAAGGAAAACCTCTGCACTG	59.117	52.381	0.00	0.00	0.00	3.66
347	381	1.494721	TGGAAGGAAAACCTCTGCACT	59.505	47.619	0.00	0.00	0.00	4.40
348	382	1.981256	TGGAAGGAAAACCTCTGCAC	58.019	50.000	0.00	0.00	0.00	4.57
349	383	2.978156	ATGGAAGGAAAACCTCTGCA	57.022	45.000	0.00	0.00	0.00	4.41
350	384	3.067320	GCATATGGAAGGAAAACCTCTGC	59.933	47.826	4.56	0.00	0.00	4.26
351	385	4.272489	TGCATATGGAAGGAAAACCTCTG	58.728	43.478	4.56	0.00	0.00	3.35
352	386	4.591321	TGCATATGGAAGGAAAACCTCT	57.409	40.909	4.56	0.00	0.00	3.69
353	387	4.646492	ACATGCATATGGAAGGAAAACCTC	59.354	41.667	0.00	0.00	38.66	3.85
354	388	4.613437	ACATGCATATGGAAGGAAAACCT	58.387	39.130	0.00	0.00	38.66	3.50
355	389	5.111293	CAACATGCATATGGAAGGAAAACC	58.889	41.667	0.00	0.00	38.66	3.27
356	390	5.577945	CACAACATGCATATGGAAGGAAAAC	59.422	40.000	14.21	0.00	38.66	2.43
357	391	5.722263	CACAACATGCATATGGAAGGAAAA	58.278	37.500	14.21	0.00	38.66	2.29
358	392	5.327616	CACAACATGCATATGGAAGGAAA	57.672	39.130	14.21	0.00	38.66	3.13
359	393	4.987408	CACAACATGCATATGGAAGGAA	57.013	40.909	14.21	0.00	38.66	3.36
421	455	3.772932	ACTCGAAGTTTACACACACGAA	58.227	40.909	0.00	0.00	31.16	3.85
423	457	4.509915	AAACTCGAAGTTTACACACACG	57.490	40.909	10.11	0.00	45.75	4.49
424	458	8.219105	CCTATTAAACTCGAAGTTTACACACAC	58.781	37.037	15.30	0.00	46.72	3.82
478	512	4.814771	GGATGACTAACCAAACCCTAATCG	59.185	45.833	0.00	0.00	0.00	3.34
485	519	3.081804	CAGGTGGATGACTAACCAAACC	58.918	50.000	0.00	0.00	37.94	3.27
521	561	0.675633	GCTGGCACTTGTTTCACCAT	59.324	50.000	0.00	0.00	0.00	3.55
522	562	0.682532	TGCTGGCACTTGTTTCACCA	60.683	50.000	0.00	0.00	0.00	4.17
555	595	1.847818	TGTGTCCTCGTTGTTTCTCG	58.152	50.000	0.00	0.00	0.00	4.04
581	621	5.779241	TGAAAGGAGGAATAATGTGGTCT	57.221	39.130	0.00	0.00	0.00	3.85
623	685	4.681978	GACCGGCACCACTCGCTT	62.682	66.667	0.00	0.00	0.00	4.68
645	707	0.248215	GCCGTTTCAATCAGGATGCG	60.248	55.000	0.00	0.00	34.76	4.73
702	2281	2.899044	GCGTTTGTGCCAGGCGTTA	61.899	57.895	7.03	0.00	0.00	3.18
924	2518	1.219664	CCGTCGGAGGTTAATGCCA	59.780	57.895	4.91	0.00	0.00	4.92
926	2520	0.461135	TACCCGTCGGAGGTTAATGC	59.539	55.000	14.39	0.00	38.89	3.56
954	2574	2.045242	CTGCTCAGCCAGGCATGT	60.045	61.111	15.80	0.00	37.83	3.21
1264	2887	2.205074	CTTGATATGCGACAGGTCACC	58.795	52.381	0.00	0.00	0.00	4.02
1803	3433	2.423446	CAGGAGCTGATACGGCCC	59.577	66.667	0.00	0.00	36.20	5.80
1966	3603	2.884207	GTCGAATCCGGCGTCCAC	60.884	66.667	6.01	0.00	36.24	4.02
2167	3804	0.386352	CCAAGCACGTCGACGACTAA	60.386	55.000	41.52	0.00	43.02	2.24
2359	3999	2.679642	CCCGCCTTTTGCCATGGA	60.680	61.111	18.40	0.00	36.24	3.41
2429	4069	8.641498	AGACACAACTTCATCCTTTTCATTAT	57.359	30.769	0.00	0.00	0.00	1.28
2436	4076	8.918202	TTGTATTAGACACAACTTCATCCTTT	57.082	30.769	0.00	0.00	37.96	3.11
2463	4109	3.317149	TCGATGATTAAGACCTACCCACG	59.683	47.826	0.00	0.00	0.00	4.94
2468	4114	7.861872	GGTTAAGTCTCGATGATTAAGACCTAC	59.138	40.741	5.01	2.47	40.21	3.18
2480	4126	6.102663	ACTGAGATTTGGTTAAGTCTCGATG	58.897	40.000	7.67	4.40	46.74	3.84
2483	4130	5.470368	TGACTGAGATTTGGTTAAGTCTCG	58.530	41.667	7.67	5.85	46.74	4.04
2545	4192	9.474920	TCGAGATACATGCAAAAATTTCTTTTT	57.525	25.926	0.00	0.00	43.62	1.94
2546	4193	9.474920	TTCGAGATACATGCAAAAATTTCTTTT	57.525	25.926	0.00	0.00	36.11	2.27
2547	4194	9.132521	CTTCGAGATACATGCAAAAATTTCTTT	57.867	29.630	0.00	0.00	0.00	2.52
2548	4195	8.514594	TCTTCGAGATACATGCAAAAATTTCTT	58.485	29.630	0.00	0.00	0.00	2.52
2549	4196	8.044060	TCTTCGAGATACATGCAAAAATTTCT	57.956	30.769	0.00	0.00	0.00	2.52
2550	4197	8.578769	GTTCTTCGAGATACATGCAAAAATTTC	58.421	33.333	0.00	0.00	0.00	2.17
2551	4198	8.299570	AGTTCTTCGAGATACATGCAAAAATTT	58.700	29.630	0.00	0.00	0.00	1.82
2552	4199	7.820648	AGTTCTTCGAGATACATGCAAAAATT	58.179	30.769	0.00	0.00	0.00	1.82
2553	4200	7.383102	AGTTCTTCGAGATACATGCAAAAAT	57.617	32.000	0.00	0.00	0.00	1.82
2554	4201	6.801539	AGTTCTTCGAGATACATGCAAAAA	57.198	33.333	0.00	0.00	0.00	1.94
2555	4202	6.801539	AAGTTCTTCGAGATACATGCAAAA	57.198	33.333	0.00	0.00	0.00	2.44
2556	4203	6.871492	TGTAAGTTCTTCGAGATACATGCAAA	59.129	34.615	0.00	0.00	0.00	3.68
2557	4204	6.310467	GTGTAAGTTCTTCGAGATACATGCAA	59.690	38.462	0.00	0.00	0.00	4.08
2558	4205	5.805486	GTGTAAGTTCTTCGAGATACATGCA	59.195	40.000	0.00	0.00	0.00	3.96
2559	4206	6.037098	AGTGTAAGTTCTTCGAGATACATGC	58.963	40.000	0.00	0.00	0.00	4.06
2560	4207	8.399425	ACTAGTGTAAGTTCTTCGAGATACATG	58.601	37.037	0.00	0.00	0.00	3.21
2561	4208	8.508883	ACTAGTGTAAGTTCTTCGAGATACAT	57.491	34.615	0.00	0.00	0.00	2.29
2562	4209	7.918536	ACTAGTGTAAGTTCTTCGAGATACA	57.081	36.000	0.00	0.00	0.00	2.29
2563	4210	9.311916	TCTACTAGTGTAAGTTCTTCGAGATAC	57.688	37.037	5.39	0.00	0.00	2.24
2564	4211	9.881649	TTCTACTAGTGTAAGTTCTTCGAGATA	57.118	33.333	5.39	0.00	0.00	1.98
2565	4212	8.789825	TTCTACTAGTGTAAGTTCTTCGAGAT	57.210	34.615	5.39	0.00	0.00	2.75
2566	4213	8.613060	TTTCTACTAGTGTAAGTTCTTCGAGA	57.387	34.615	5.39	0.00	0.00	4.04
2567	4214	9.116054	GTTTTCTACTAGTGTAAGTTCTTCGAG	57.884	37.037	5.39	0.00	0.00	4.04
2568	4215	8.844244	AGTTTTCTACTAGTGTAAGTTCTTCGA	58.156	33.333	5.39	0.00	34.56	3.71
2569	4216	8.903723	CAGTTTTCTACTAGTGTAAGTTCTTCG	58.096	37.037	5.39	0.00	34.56	3.79
2570	4217	9.194271	CCAGTTTTCTACTAGTGTAAGTTCTTC	57.806	37.037	5.39	0.00	34.56	2.87
2571	4218	8.148999	CCCAGTTTTCTACTAGTGTAAGTTCTT	58.851	37.037	5.39	0.00	34.56	2.52
2572	4219	7.668492	CCCAGTTTTCTACTAGTGTAAGTTCT	58.332	38.462	5.39	0.00	34.56	3.01
2573	4220	6.368243	GCCCAGTTTTCTACTAGTGTAAGTTC	59.632	42.308	5.39	0.00	34.56	3.01
2574	4221	6.042897	AGCCCAGTTTTCTACTAGTGTAAGTT	59.957	38.462	5.39	0.00	34.56	2.66
2575	4222	5.543020	AGCCCAGTTTTCTACTAGTGTAAGT	59.457	40.000	5.39	0.00	34.56	2.24
2637	4284	1.472728	GCATTAGTCCCGGTTCGTGAT	60.473	52.381	0.00	0.00	0.00	3.06
2742	4389	0.538516	CCGATTTGTCCCACCAACCA	60.539	55.000	0.00	0.00	0.00	3.67
3361	5023	3.419858	CCTGAATCCTGGCCCACT	58.580	61.111	0.00	0.00	0.00	4.00

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.