Multiple sequence alignment - TraesCS1D01G118800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G118800 chr1D 100.000 3536 0 0 1 3536 114392987 114389452 0.000000e+00 6530.0
1 TraesCS1D01G118800 chr1D 81.219 1411 257 8 1054 2460 114645771 114647177 0.000000e+00 1131.0
2 TraesCS1D01G118800 chr1D 96.354 192 7 0 3345 3536 364678264 364678073 2.050000e-82 316.0
3 TraesCS1D01G118800 chr1A 94.428 1741 60 16 973 2703 125110617 125108904 0.000000e+00 2643.0
4 TraesCS1D01G118800 chr1A 79.170 1421 271 14 1054 2462 569255710 569257117 0.000000e+00 961.0
5 TraesCS1D01G118800 chr1A 86.207 783 71 23 1 769 125115313 125114554 0.000000e+00 813.0
6 TraesCS1D01G118800 chr1A 81.948 421 45 8 2921 3339 125080254 125079863 9.460000e-86 327.0
7 TraesCS1D01G118800 chr1A 94.656 131 7 0 807 937 125110742 125110612 1.660000e-48 204.0
8 TraesCS1D01G118800 chr1B 91.848 1055 40 11 1678 2726 175604815 175603801 0.000000e+00 1430.0
9 TraesCS1D01G118800 chr1B 79.972 1413 275 8 1054 2462 175661169 175662577 0.000000e+00 1035.0
10 TraesCS1D01G118800 chr1B 87.692 780 72 14 1 771 175605636 175604872 0.000000e+00 887.0
11 TraesCS1D01G118800 chr1B 83.532 419 48 6 2925 3342 175602501 175602103 4.310000e-99 372.0
12 TraesCS1D01G118800 chr5A 80.522 1417 263 7 1054 2462 624708237 624706826 0.000000e+00 1075.0
13 TraesCS1D01G118800 chr5D 79.944 1441 263 17 1054 2477 545112883 545111452 0.000000e+00 1037.0
14 TraesCS1D01G118800 chr5B 79.636 1429 266 17 1054 2462 687694754 687696177 0.000000e+00 1003.0
15 TraesCS1D01G118800 chr5B 81.559 1193 207 5 1054 2235 687469693 687468503 0.000000e+00 972.0
16 TraesCS1D01G118800 chr5B 81.429 140 21 3 368 506 557807109 557806974 3.730000e-20 110.0
17 TraesCS1D01G118800 chr4A 79.592 1421 265 14 1054 2462 624834603 624833196 0.000000e+00 994.0
18 TraesCS1D01G118800 chr4A 86.420 81 11 0 396 476 722277814 722277894 4.860000e-14 89.8
19 TraesCS1D01G118800 chr7B 75.643 1244 234 48 1053 2248 108249022 108250244 3.990000e-154 555.0
20 TraesCS1D01G118800 chr3A 74.742 1259 244 52 1053 2253 100959891 100958649 2.450000e-136 496.0
21 TraesCS1D01G118800 chr3A 94.089 203 10 2 3334 3535 659990301 659990100 1.230000e-79 307.0
22 TraesCS1D01G118800 chr3A 80.220 91 16 2 368 457 645552795 645552706 2.280000e-07 67.6
23 TraesCS1D01G118800 chr2D 96.392 194 7 0 3343 3536 469572214 469572021 1.580000e-83 320.0
24 TraesCS1D01G118800 chr2D 96.373 193 7 0 3344 3536 383098132 383097940 5.700000e-83 318.0
25 TraesCS1D01G118800 chr2D 77.778 144 27 5 3168 3308 515089583 515089442 2.260000e-12 84.2
26 TraesCS1D01G118800 chr7D 96.373 193 7 0 3344 3536 531717475 531717667 5.700000e-83 318.0
27 TraesCS1D01G118800 chr7D 96.842 190 6 0 3345 3534 556652207 556652396 5.700000e-83 318.0
28 TraesCS1D01G118800 chr7D 96.354 192 7 0 3345 3536 170738494 170738685 2.050000e-82 316.0
29 TraesCS1D01G118800 chr7D 96.354 192 7 0 3345 3536 231856781 231856972 2.050000e-82 316.0
30 TraesCS1D01G118800 chr7D 100.000 28 0 0 443 470 376096060 376096033 6.000000e-03 52.8
31 TraesCS1D01G118800 chr3D 94.975 199 9 1 3338 3536 73460399 73460596 9.530000e-81 311.0
32 TraesCS1D01G118800 chr2A 81.731 104 19 0 2055 2158 35385276 35385379 1.750000e-13 87.9
33 TraesCS1D01G118800 chr2A 78.704 108 18 5 3204 3308 659203582 659203477 2.280000e-07 67.6
34 TraesCS1D01G118800 chr2B 80.769 104 20 0 2055 2158 53200326 53200429 8.140000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G118800 chr1D 114389452 114392987 3535 True 6530.000000 6530 100.000000 1 3536 1 chr1D.!!$R1 3535
1 TraesCS1D01G118800 chr1D 114645771 114647177 1406 False 1131.000000 1131 81.219000 1054 2460 1 chr1D.!!$F1 1406
2 TraesCS1D01G118800 chr1A 125108904 125115313 6409 True 1220.000000 2643 91.763667 1 2703 3 chr1A.!!$R2 2702
3 TraesCS1D01G118800 chr1A 569255710 569257117 1407 False 961.000000 961 79.170000 1054 2462 1 chr1A.!!$F1 1408
4 TraesCS1D01G118800 chr1B 175661169 175662577 1408 False 1035.000000 1035 79.972000 1054 2462 1 chr1B.!!$F1 1408
5 TraesCS1D01G118800 chr1B 175602103 175605636 3533 True 896.333333 1430 87.690667 1 3342 3 chr1B.!!$R1 3341
6 TraesCS1D01G118800 chr5A 624706826 624708237 1411 True 1075.000000 1075 80.522000 1054 2462 1 chr5A.!!$R1 1408
7 TraesCS1D01G118800 chr5D 545111452 545112883 1431 True 1037.000000 1037 79.944000 1054 2477 1 chr5D.!!$R1 1423
8 TraesCS1D01G118800 chr5B 687694754 687696177 1423 False 1003.000000 1003 79.636000 1054 2462 1 chr5B.!!$F1 1408
9 TraesCS1D01G118800 chr5B 687468503 687469693 1190 True 972.000000 972 81.559000 1054 2235 1 chr5B.!!$R2 1181
10 TraesCS1D01G118800 chr4A 624833196 624834603 1407 True 994.000000 994 79.592000 1054 2462 1 chr4A.!!$R1 1408
11 TraesCS1D01G118800 chr7B 108249022 108250244 1222 False 555.000000 555 75.643000 1053 2248 1 chr7B.!!$F1 1195
12 TraesCS1D01G118800 chr3A 100958649 100959891 1242 True 496.000000 496 74.742000 1053 2253 1 chr3A.!!$R1 1200

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
841 4632 0.529119 CTTTCCGGGTCCGTATTCCG 60.529 60.0 0.0 0.0 43.05 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2820 7606 0.247814 CGGTTGCAGCATAGCTTTCG 60.248 55.0 2.05 0.0 36.4 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 150 3.731089 TCAAACCTACTTAACACCACCG 58.269 45.455 0.00 0.00 0.00 4.94
148 154 2.967887 ACCTACTTAACACCACCGTCTT 59.032 45.455 0.00 0.00 0.00 3.01
235 244 4.771114 TGTACCTACCTCATTCATTGGG 57.229 45.455 0.00 0.00 0.00 4.12
255 264 2.363359 GGGCACATCCATCAGAATTTCC 59.637 50.000 0.00 0.00 36.21 3.13
259 268 5.337813 GGCACATCCATCAGAATTTCCTTTT 60.338 40.000 0.00 0.00 34.01 2.27
312 321 6.472163 AGTGTTTCTTTTGCGTATGTTTTCAG 59.528 34.615 0.00 0.00 0.00 3.02
317 326 5.708230 TCTTTTGCGTATGTTTTCAGGGTAT 59.292 36.000 0.00 0.00 0.00 2.73
323 332 8.734218 TGCGTATGTTTTCAGGGTATTAAATA 57.266 30.769 0.00 0.00 0.00 1.40
337 346 8.529476 AGGGTATTAAATATACACATCCGACTC 58.471 37.037 0.00 0.00 30.59 3.36
350 359 4.277174 ACATCCGACTCTCTGCTATAACAG 59.723 45.833 0.00 0.00 39.12 3.16
394 403 3.841379 GAGCGATGATGGCGGCGTA 62.841 63.158 9.37 0.00 35.00 4.42
395 404 2.738521 GCGATGATGGCGGCGTAT 60.739 61.111 9.37 3.28 0.00 3.06
400 409 1.195448 GATGATGGCGGCGTATCTTTG 59.805 52.381 20.83 0.00 0.00 2.77
426 435 3.423123 CGCTTCAGTGTTTGTAATCGTCC 60.423 47.826 0.00 0.00 0.00 4.79
489 498 0.807496 GTCTTGGCTGCTTCCATGAC 59.193 55.000 19.72 19.72 46.76 3.06
492 501 1.201647 CTTGGCTGCTTCCATGACAAG 59.798 52.381 0.00 0.00 35.77 3.16
510 521 9.038803 CATGACAAGAGATGAATAGATCGAAAA 57.961 33.333 0.00 0.00 0.00 2.29
685 703 0.743701 CATGCTCACAGCCTCTCACC 60.744 60.000 0.00 0.00 41.51 4.02
692 710 2.930562 AGCCTCTCACCCACACCC 60.931 66.667 0.00 0.00 0.00 4.61
699 717 3.630054 CCTCTCACCCACACCCTATAGAA 60.630 52.174 0.00 0.00 0.00 2.10
700 718 3.371965 TCTCACCCACACCCTATAGAAC 58.628 50.000 0.00 0.00 0.00 3.01
702 720 2.193127 CACCCACACCCTATAGAACCA 58.807 52.381 0.00 0.00 0.00 3.67
703 721 2.777692 CACCCACACCCTATAGAACCAT 59.222 50.000 0.00 0.00 0.00 3.55
704 722 3.971305 CACCCACACCCTATAGAACCATA 59.029 47.826 0.00 0.00 0.00 2.74
706 724 3.008049 CCCACACCCTATAGAACCATAGC 59.992 52.174 0.00 0.00 0.00 2.97
707 725 3.306088 CCACACCCTATAGAACCATAGCG 60.306 52.174 0.00 0.00 0.00 4.26
708 726 3.572682 CACACCCTATAGAACCATAGCGA 59.427 47.826 0.00 0.00 0.00 4.93
709 727 3.827302 ACACCCTATAGAACCATAGCGAG 59.173 47.826 0.00 0.00 0.00 5.03
710 728 3.193691 CACCCTATAGAACCATAGCGAGG 59.806 52.174 0.00 0.00 0.00 4.63
711 729 3.075582 ACCCTATAGAACCATAGCGAGGA 59.924 47.826 0.00 0.00 0.00 3.71
712 730 3.697045 CCCTATAGAACCATAGCGAGGAG 59.303 52.174 0.00 0.00 0.00 3.69
756 775 1.157585 TCGAGTCGAGTGAAGTCTGG 58.842 55.000 12.09 0.00 0.00 3.86
759 4176 2.287668 CGAGTCGAGTGAAGTCTGGTTT 60.288 50.000 6.73 0.00 0.00 3.27
760 4177 3.058432 CGAGTCGAGTGAAGTCTGGTTTA 60.058 47.826 6.73 0.00 0.00 2.01
791 4208 6.536731 TTTAAGTCGTATAGAGCTAGTCGG 57.463 41.667 0.00 0.00 0.00 4.79
792 4209 2.415776 AGTCGTATAGAGCTAGTCGGC 58.584 52.381 0.00 0.00 0.00 5.54
793 4210 2.141517 GTCGTATAGAGCTAGTCGGCA 58.858 52.381 0.00 0.00 34.17 5.69
794 4211 2.547211 GTCGTATAGAGCTAGTCGGCAA 59.453 50.000 0.00 0.00 34.17 4.52
795 4212 2.547211 TCGTATAGAGCTAGTCGGCAAC 59.453 50.000 0.00 0.00 34.17 4.17
796 4213 2.289820 CGTATAGAGCTAGTCGGCAACA 59.710 50.000 0.00 0.00 34.17 3.33
797 4214 3.242969 CGTATAGAGCTAGTCGGCAACAA 60.243 47.826 0.00 0.00 34.17 2.83
800 4217 0.796927 GAGCTAGTCGGCAACAAACC 59.203 55.000 0.00 0.00 34.17 3.27
801 4218 0.605589 AGCTAGTCGGCAACAAACCC 60.606 55.000 0.00 0.00 34.17 4.11
805 4596 0.818040 AGTCGGCAACAAACCCTGAC 60.818 55.000 0.00 0.00 0.00 3.51
828 4619 2.227388 ACGAGTGGTACTGTACTTTCCG 59.773 50.000 16.79 16.10 0.00 4.30
841 4632 0.529119 CTTTCCGGGTCCGTATTCCG 60.529 60.000 0.00 0.00 43.05 4.30
871 4662 3.398954 TCGATCGCAATAAAACCTTGC 57.601 42.857 11.09 0.00 44.32 4.01
901 4692 2.563798 CGGGCCACACAATGCACTT 61.564 57.895 4.39 0.00 0.00 3.16
908 4699 1.134487 CACAATGCACTTACCCGCG 59.866 57.895 0.00 0.00 0.00 6.46
937 4728 0.682292 TGACCAACCTCGTGCACATA 59.318 50.000 18.64 2.91 0.00 2.29
938 4729 1.277842 TGACCAACCTCGTGCACATAT 59.722 47.619 18.64 0.00 0.00 1.78
939 4730 1.665679 GACCAACCTCGTGCACATATG 59.334 52.381 18.64 0.00 0.00 1.78
950 4741 3.167189 CACATATGCAACCGGTGGA 57.833 52.632 15.02 6.95 0.00 4.02
951 4742 1.016627 CACATATGCAACCGGTGGAG 58.983 55.000 15.02 5.25 0.00 3.86
952 4743 0.748005 ACATATGCAACCGGTGGAGC 60.748 55.000 15.02 16.41 0.00 4.70
953 4744 1.523711 ATATGCAACCGGTGGAGCG 60.524 57.895 15.02 0.00 32.11 5.03
964 4755 4.007644 TGGAGCGCCACCTGAGTG 62.008 66.667 19.36 0.00 39.92 3.51
974 4765 2.768253 CACCTGAGTGGATTGTAGCA 57.232 50.000 0.00 0.00 40.55 3.49
975 4766 2.625737 CACCTGAGTGGATTGTAGCAG 58.374 52.381 0.00 0.00 40.55 4.24
976 4767 1.065854 ACCTGAGTGGATTGTAGCAGC 60.066 52.381 0.00 0.00 39.71 5.25
977 4768 1.065926 CCTGAGTGGATTGTAGCAGCA 60.066 52.381 0.00 0.00 38.35 4.41
978 4769 2.421107 CCTGAGTGGATTGTAGCAGCAT 60.421 50.000 0.00 0.00 38.35 3.79
995 4786 1.103803 CATCCATCTTTGCAGCTGCT 58.896 50.000 36.61 16.02 42.66 4.24
999 4790 2.404995 ATCTTTGCAGCTGCTCGCC 61.405 57.895 36.61 10.79 42.66 5.54
1009 4800 2.747460 TGCTCGCCATGTCTTGCC 60.747 61.111 0.00 0.00 0.00 4.52
1248 5042 1.444553 CTTCGCCGAGCTCGAGTTT 60.445 57.895 36.59 2.46 43.02 2.66
2307 6178 0.909610 AAGTGCAGATCGGGAGGGAA 60.910 55.000 0.00 0.00 0.00 3.97
2480 6351 3.450578 TCGTACAGCAAGAAAAAGACGT 58.549 40.909 0.00 0.00 0.00 4.34
2499 6370 1.374125 CGTGGAGGTTCATGACGCA 60.374 57.895 0.00 0.00 0.00 5.24
2524 6395 0.401738 CCTCAGGGAGCAGGAACAAA 59.598 55.000 0.00 0.00 33.58 2.83
2527 6398 2.555757 CTCAGGGAGCAGGAACAAAAAG 59.444 50.000 0.00 0.00 0.00 2.27
2530 6401 1.000171 GGGAGCAGGAACAAAAAGCTG 60.000 52.381 0.00 0.00 35.36 4.24
2531 6402 1.683385 GGAGCAGGAACAAAAAGCTGT 59.317 47.619 0.00 0.00 35.36 4.40
2532 6403 2.884639 GGAGCAGGAACAAAAAGCTGTA 59.115 45.455 0.00 0.00 35.36 2.74
2538 6409 5.327091 CAGGAACAAAAAGCTGTATGATCG 58.673 41.667 0.00 0.00 0.00 3.69
2546 6417 5.480642 AAAGCTGTATGATCGATCAGGAT 57.519 39.130 30.11 17.93 40.64 3.24
2549 6420 5.960113 AGCTGTATGATCGATCAGGATAAC 58.040 41.667 30.11 21.45 40.64 1.89
2550 6421 5.478332 AGCTGTATGATCGATCAGGATAACA 59.522 40.000 30.11 24.00 40.64 2.41
2551 6422 5.574830 GCTGTATGATCGATCAGGATAACAC 59.425 44.000 30.11 18.37 40.64 3.32
2569 6440 2.567169 ACACAGTTGGGATCGATCAGAA 59.433 45.455 25.93 14.77 0.00 3.02
2570 6441 3.198635 ACACAGTTGGGATCGATCAGAAT 59.801 43.478 25.93 8.21 0.00 2.40
2580 6451 4.212004 GGATCGATCAGAATGCATTTTCGA 59.788 41.667 25.93 25.67 34.76 3.71
2581 6452 4.520743 TCGATCAGAATGCATTTTCGAC 57.479 40.909 22.53 9.36 34.76 4.20
2617 6493 8.262601 TCATCATATAGTCATAAACAGGTGGT 57.737 34.615 0.00 0.00 0.00 4.16
2618 6494 8.713971 TCATCATATAGTCATAAACAGGTGGTT 58.286 33.333 0.00 0.00 42.98 3.67
2619 6495 8.993121 CATCATATAGTCATAAACAGGTGGTTC 58.007 37.037 0.00 0.00 39.29 3.62
2620 6496 7.207383 TCATATAGTCATAAACAGGTGGTTCG 58.793 38.462 0.00 0.00 39.29 3.95
2621 6497 2.423577 AGTCATAAACAGGTGGTTCGC 58.576 47.619 0.00 0.00 39.29 4.70
2622 6498 2.147958 GTCATAAACAGGTGGTTCGCA 58.852 47.619 0.00 0.00 39.29 5.10
2623 6499 2.095919 GTCATAAACAGGTGGTTCGCAC 60.096 50.000 0.00 0.00 39.29 5.34
2624 6500 2.151202 CATAAACAGGTGGTTCGCACT 58.849 47.619 0.00 0.00 39.29 4.40
2628 6504 2.665185 AGGTGGTTCGCACTTCGC 60.665 61.111 0.00 0.00 38.27 4.70
2630 6506 2.551270 GTGGTTCGCACTTCGCAG 59.449 61.111 0.00 0.00 42.60 5.18
2647 6523 6.763135 ACTTCGCAGCAGATTATGAAATTCTA 59.237 34.615 0.00 0.00 0.00 2.10
2648 6524 7.443575 ACTTCGCAGCAGATTATGAAATTCTAT 59.556 33.333 0.00 0.00 0.00 1.98
2649 6525 7.356641 TCGCAGCAGATTATGAAATTCTATC 57.643 36.000 0.00 0.00 0.00 2.08
2650 6526 6.930722 TCGCAGCAGATTATGAAATTCTATCA 59.069 34.615 0.00 0.00 0.00 2.15
2651 6527 7.117379 TCGCAGCAGATTATGAAATTCTATCAG 59.883 37.037 0.00 0.00 0.00 2.90
2652 6528 7.117379 CGCAGCAGATTATGAAATTCTATCAGA 59.883 37.037 0.00 0.00 0.00 3.27
2653 6529 8.229137 GCAGCAGATTATGAAATTCTATCAGAC 58.771 37.037 0.00 0.00 0.00 3.51
2654 6530 9.491675 CAGCAGATTATGAAATTCTATCAGACT 57.508 33.333 0.00 0.00 0.00 3.24
2655 6531 9.491675 AGCAGATTATGAAATTCTATCAGACTG 57.508 33.333 0.00 0.00 0.00 3.51
2656 6532 8.229137 GCAGATTATGAAATTCTATCAGACTGC 58.771 37.037 0.00 0.00 36.43 4.40
2657 6533 8.719648 CAGATTATGAAATTCTATCAGACTGCC 58.280 37.037 0.00 0.00 0.00 4.85
2665 6541 4.184649 TCTATCAGACTGCCACCTGATA 57.815 45.455 14.34 14.34 45.34 2.15
2681 6557 4.526262 ACCTGATAAAGATCGGATCTGGAG 59.474 45.833 20.57 11.58 40.47 3.86
2697 6574 1.086634 GGAGGAGCAGATGTCAACGC 61.087 60.000 0.00 0.00 0.00 4.84
2699 6576 2.109126 GGAGCAGATGTCAACGCCC 61.109 63.158 0.00 0.00 0.00 6.13
2715 6592 1.534163 CGCCCTGTCATCAAGCATATG 59.466 52.381 0.00 0.00 0.00 1.78
2726 6603 7.607607 TGTCATCAAGCATATGTTAGTCAACTT 59.392 33.333 4.29 0.00 35.56 2.66
2727 6604 8.454106 GTCATCAAGCATATGTTAGTCAACTTT 58.546 33.333 4.29 0.00 35.56 2.66
2728 6605 9.013229 TCATCAAGCATATGTTAGTCAACTTTT 57.987 29.630 4.29 0.00 35.56 2.27
2729 6606 9.630098 CATCAAGCATATGTTAGTCAACTTTTT 57.370 29.630 4.29 0.00 35.56 1.94
2759 7545 0.734253 AACAGCATCGTCGAGCAGAC 60.734 55.000 15.71 2.66 46.16 3.51
2774 7560 3.002791 AGCAGACGTGTCATTTGTATGG 58.997 45.455 0.00 0.00 32.40 2.74
2776 7562 2.095853 CAGACGTGTCATTTGTATGGGC 59.904 50.000 0.00 0.00 32.40 5.36
2784 7570 2.240921 TCATTTGTATGGGCCTGTAGCA 59.759 45.455 4.53 0.00 46.50 3.49
2791 7577 1.578897 TGGGCCTGTAGCATGTTAGA 58.421 50.000 4.53 0.00 46.50 2.10
2803 7589 2.228822 GCATGTTAGACCACCTTGTTGG 59.771 50.000 0.00 0.00 43.04 3.77
2811 7597 1.227823 CACCTTGTTGGGCTCGACA 60.228 57.895 1.23 1.23 41.11 4.35
2815 7601 1.207089 CCTTGTTGGGCTCGACATCTA 59.793 52.381 7.69 0.00 37.16 1.98
2817 7603 3.535561 CTTGTTGGGCTCGACATCTATT 58.464 45.455 7.69 0.00 37.16 1.73
2819 7605 3.950397 TGTTGGGCTCGACATCTATTTT 58.050 40.909 1.23 0.00 32.62 1.82
2820 7606 3.938963 TGTTGGGCTCGACATCTATTTTC 59.061 43.478 1.23 0.00 32.62 2.29
2825 7611 4.025647 GGGCTCGACATCTATTTTCGAAAG 60.026 45.833 10.98 0.00 41.02 2.62
2826 7612 4.509891 GCTCGACATCTATTTTCGAAAGC 58.490 43.478 10.98 2.54 41.02 3.51
2830 7616 7.394870 TCGACATCTATTTTCGAAAGCTATG 57.605 36.000 10.98 14.51 38.77 2.23
2836 7622 3.913548 TTTTCGAAAGCTATGCTGCAA 57.086 38.095 10.98 0.00 39.62 4.08
2838 7624 1.086696 TCGAAAGCTATGCTGCAACC 58.913 50.000 6.36 0.00 39.62 3.77
2847 7633 3.127533 GCTGCAACCGCCTCGATT 61.128 61.111 0.00 0.00 37.32 3.34
2852 7638 0.451783 GCAACCGCCTCGATTTTCAT 59.548 50.000 0.00 0.00 0.00 2.57
2856 7642 1.940613 ACCGCCTCGATTTTCATTAGC 59.059 47.619 0.00 0.00 0.00 3.09
2865 7651 7.475015 CCTCGATTTTCATTAGCTGAATTTCA 58.525 34.615 0.00 0.00 43.30 2.69
2868 7654 6.290748 CGATTTTCATTAGCTGAATTTCACGC 60.291 38.462 0.00 10.84 43.30 5.34
2870 7656 2.104144 CATTAGCTGAATTTCACGCGC 58.896 47.619 5.73 0.00 0.00 6.86
2873 7659 2.476051 CTGAATTTCACGCGCGCT 59.524 55.556 32.58 14.89 0.00 5.92
2875 7661 0.725784 CTGAATTTCACGCGCGCTTT 60.726 50.000 32.58 16.10 0.00 3.51
2876 7662 0.513385 TGAATTTCACGCGCGCTTTA 59.487 45.000 32.58 14.05 0.00 1.85
2884 7671 1.437089 CGCGCGCTTTATCGGAATG 60.437 57.895 30.48 4.48 0.00 2.67
2890 7677 2.802816 GCGCTTTATCGGAATGAGACAT 59.197 45.455 0.00 0.00 0.00 3.06
2892 7679 4.302455 CGCTTTATCGGAATGAGACATCT 58.698 43.478 0.00 0.00 0.00 2.90
2897 7684 7.539366 GCTTTATCGGAATGAGACATCTAGTAC 59.461 40.741 0.00 0.00 0.00 2.73
2903 7690 6.226787 GGAATGAGACATCTAGTACCATTGG 58.773 44.000 0.00 0.00 34.50 3.16
2905 7692 6.662865 ATGAGACATCTAGTACCATTGGAG 57.337 41.667 10.37 0.00 0.00 3.86
2908 7695 4.586841 AGACATCTAGTACCATTGGAGAGC 59.413 45.833 10.37 0.00 0.00 4.09
2909 7696 4.551671 ACATCTAGTACCATTGGAGAGCT 58.448 43.478 10.37 4.27 0.00 4.09
2918 7705 2.932614 CCATTGGAGAGCTTCGTACAAG 59.067 50.000 0.00 0.00 0.00 3.16
2919 7706 2.743636 TTGGAGAGCTTCGTACAAGG 57.256 50.000 0.00 0.00 0.00 3.61
2923 7710 3.260884 TGGAGAGCTTCGTACAAGGAAAT 59.739 43.478 0.00 0.00 0.00 2.17
2931 7911 6.201044 AGCTTCGTACAAGGAAATCATATTCG 59.799 38.462 0.00 0.00 0.00 3.34
2940 7920 9.784531 ACAAGGAAATCATATTCGATGTAGAAT 57.215 29.630 0.00 0.00 42.77 2.40
2959 7939 8.559536 TGTAGAATATTTTCATGAATTCCTCGC 58.440 33.333 9.40 2.24 34.08 5.03
2967 7947 6.609237 TTCATGAATTCCTCGCAGATTAAG 57.391 37.500 3.38 0.00 33.89 1.85
2976 7956 3.686726 CCTCGCAGATTAAGAGCAGTTTT 59.313 43.478 0.00 0.00 33.89 2.43
2977 7957 4.436584 CCTCGCAGATTAAGAGCAGTTTTG 60.437 45.833 0.00 0.00 33.89 2.44
3032 8013 9.834628 TGTGAATCGTATTTTGACCTTATTTTC 57.165 29.630 0.00 0.00 0.00 2.29
3047 8028 6.977213 CCTTATTTTCAAAGGTTTCTCGGAA 58.023 36.000 0.00 0.00 38.98 4.30
3077 8058 9.904647 CAAAAATGATATAGCGTTGGAAATTTG 57.095 29.630 0.00 0.27 0.00 2.32
3079 8060 9.651913 AAAATGATATAGCGTTGGAAATTTGTT 57.348 25.926 0.00 0.00 0.00 2.83
3081 8062 6.033341 TGATATAGCGTTGGAAATTTGTTGC 58.967 36.000 0.00 0.00 0.00 4.17
3084 8065 1.189227 GCGTTGGAAATTTGTTGCGAC 59.811 47.619 0.00 0.00 0.00 5.19
3106 8087 3.375299 CCCGCTCCTTTTCATGTAGAAAG 59.625 47.826 10.14 10.14 46.24 2.62
3192 8173 6.148811 TCGTATCTTTGGGTTCATTTTGAGAC 59.851 38.462 0.00 0.00 0.00 3.36
3194 8175 5.772825 TCTTTGGGTTCATTTTGAGACAG 57.227 39.130 0.00 0.00 0.00 3.51
3196 8177 3.228188 TGGGTTCATTTTGAGACAGCT 57.772 42.857 0.00 0.00 0.00 4.24
3222 8203 3.916172 CGTAATGCAGCAAATCATATGGC 59.084 43.478 0.00 0.00 0.00 4.40
3235 8216 4.095410 TCATATGGCGTTGAAAAGCTTG 57.905 40.909 0.00 0.00 0.00 4.01
3238 8219 0.527385 TGGCGTTGAAAAGCTTGTGC 60.527 50.000 0.00 0.00 40.05 4.57
3242 8223 2.284952 GCGTTGAAAAGCTTGTGCAAAT 59.715 40.909 0.00 0.00 42.74 2.32
3244 8225 3.610495 GTTGAAAAGCTTGTGCAAATGC 58.390 40.909 6.65 6.65 42.74 3.56
3296 8277 9.292846 ACAAATTCTTTACGGTTTAAGTTGAAC 57.707 29.630 1.98 1.98 0.00 3.18
3301 8282 8.266392 TCTTTACGGTTTAAGTTGAACTTTCA 57.734 30.769 16.49 0.67 39.51 2.69
3327 8308 2.515912 GCGGAAGTTATTTTGAAGGCG 58.484 47.619 0.00 0.00 0.00 5.52
3333 8314 6.364976 CGGAAGTTATTTTGAAGGCGAAATTT 59.635 34.615 0.00 0.00 38.67 1.82
3342 8323 7.924103 TTTGAAGGCGAAATTTAAGAAGAAC 57.076 32.000 0.00 0.00 0.00 3.01
3343 8324 6.627395 TGAAGGCGAAATTTAAGAAGAACA 57.373 33.333 0.00 0.00 0.00 3.18
3344 8325 7.214467 TGAAGGCGAAATTTAAGAAGAACAT 57.786 32.000 0.00 0.00 0.00 2.71
3345 8326 7.083858 TGAAGGCGAAATTTAAGAAGAACATG 58.916 34.615 0.00 0.00 0.00 3.21
3346 8327 6.575162 AGGCGAAATTTAAGAAGAACATGT 57.425 33.333 0.00 0.00 0.00 3.21
3347 8328 6.981722 AGGCGAAATTTAAGAAGAACATGTT 58.018 32.000 11.78 11.78 0.00 2.71
3348 8329 6.863126 AGGCGAAATTTAAGAAGAACATGTTG 59.137 34.615 17.58 0.00 0.00 3.33
3349 8330 6.089417 GGCGAAATTTAAGAAGAACATGTTGG 59.911 38.462 17.58 0.00 0.00 3.77
3350 8331 6.089417 GCGAAATTTAAGAAGAACATGTTGGG 59.911 38.462 17.58 0.00 0.00 4.12
3351 8332 6.586082 CGAAATTTAAGAAGAACATGTTGGGG 59.414 38.462 17.58 0.00 0.00 4.96
3352 8333 7.523052 CGAAATTTAAGAAGAACATGTTGGGGA 60.523 37.037 17.58 0.00 0.00 4.81
3353 8334 7.610580 AATTTAAGAAGAACATGTTGGGGAA 57.389 32.000 17.58 2.16 0.00 3.97
3354 8335 6.399639 TTTAAGAAGAACATGTTGGGGAAC 57.600 37.500 17.58 0.00 0.00 3.62
3355 8336 2.504367 AGAAGAACATGTTGGGGAACG 58.496 47.619 17.58 0.00 0.00 3.95
3356 8337 2.158667 AGAAGAACATGTTGGGGAACGT 60.159 45.455 17.58 0.00 0.00 3.99
3357 8338 3.071892 AGAAGAACATGTTGGGGAACGTA 59.928 43.478 17.58 0.00 0.00 3.57
3358 8339 3.053831 AGAACATGTTGGGGAACGTAG 57.946 47.619 17.58 0.00 0.00 3.51
3360 8341 3.579586 AGAACATGTTGGGGAACGTAGTA 59.420 43.478 17.58 0.00 45.00 1.82
3361 8342 4.040706 AGAACATGTTGGGGAACGTAGTAA 59.959 41.667 17.58 0.00 45.00 2.24
3362 8343 4.563140 ACATGTTGGGGAACGTAGTAAT 57.437 40.909 0.00 0.00 45.00 1.89
3363 8344 4.913784 ACATGTTGGGGAACGTAGTAATT 58.086 39.130 0.00 0.00 45.00 1.40
3364 8345 5.318630 ACATGTTGGGGAACGTAGTAATTT 58.681 37.500 0.00 0.00 45.00 1.82
3365 8346 5.413523 ACATGTTGGGGAACGTAGTAATTTC 59.586 40.000 0.00 0.00 45.00 2.17
3366 8347 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
3367 8348 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
3368 8349 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
3369 8350 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
3370 8351 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
3387 8368 2.894307 AAAAATTCCTACGCAGACGC 57.106 45.000 0.00 0.00 45.53 5.19
3388 8369 1.803334 AAAATTCCTACGCAGACGCA 58.197 45.000 0.00 0.00 45.53 5.24
3389 8370 1.803334 AAATTCCTACGCAGACGCAA 58.197 45.000 0.00 0.00 45.53 4.85
3390 8371 1.803334 AATTCCTACGCAGACGCAAA 58.197 45.000 0.00 0.00 45.53 3.68
3391 8372 1.803334 ATTCCTACGCAGACGCAAAA 58.197 45.000 0.00 0.00 45.53 2.44
3392 8373 0.863144 TTCCTACGCAGACGCAAAAC 59.137 50.000 0.00 0.00 45.53 2.43
3393 8374 0.947180 TCCTACGCAGACGCAAAACC 60.947 55.000 0.00 0.00 45.53 3.27
3394 8375 1.225376 CCTACGCAGACGCAAAACCA 61.225 55.000 0.00 0.00 45.53 3.67
3395 8376 0.796312 CTACGCAGACGCAAAACCAT 59.204 50.000 0.00 0.00 45.53 3.55
3396 8377 0.515127 TACGCAGACGCAAAACCATG 59.485 50.000 0.00 0.00 45.53 3.66
3397 8378 1.442520 CGCAGACGCAAAACCATGG 60.443 57.895 11.19 11.19 38.40 3.66
3398 8379 1.659794 GCAGACGCAAAACCATGGT 59.340 52.632 13.00 13.00 38.36 3.55
3399 8380 0.664166 GCAGACGCAAAACCATGGTG 60.664 55.000 20.60 7.99 38.36 4.17
3400 8381 0.950836 CAGACGCAAAACCATGGTGA 59.049 50.000 20.60 0.00 0.00 4.02
3401 8382 1.541147 CAGACGCAAAACCATGGTGAT 59.459 47.619 20.60 8.02 0.00 3.06
3402 8383 1.541147 AGACGCAAAACCATGGTGATG 59.459 47.619 20.60 20.61 0.00 3.07
3403 8384 0.038343 ACGCAAAACCATGGTGATGC 60.038 50.000 31.20 31.20 37.25 3.91
3404 8385 0.038435 CGCAAAACCATGGTGATGCA 60.038 50.000 35.56 0.00 39.16 3.96
3405 8386 1.404449 CGCAAAACCATGGTGATGCAT 60.404 47.619 35.56 15.30 39.16 3.96
3406 8387 2.159268 CGCAAAACCATGGTGATGCATA 60.159 45.455 35.56 0.00 39.16 3.14
3407 8388 3.675502 CGCAAAACCATGGTGATGCATAA 60.676 43.478 35.56 0.00 39.16 1.90
3408 8389 3.618150 GCAAAACCATGGTGATGCATAAC 59.382 43.478 33.84 5.51 39.08 1.89
3409 8390 4.818642 CAAAACCATGGTGATGCATAACA 58.181 39.130 20.60 8.10 0.00 2.41
3410 8391 5.236282 CAAAACCATGGTGATGCATAACAA 58.764 37.500 20.60 4.95 0.00 2.83
3411 8392 4.454728 AACCATGGTGATGCATAACAAC 57.545 40.909 20.60 6.50 0.00 3.32
3412 8393 2.423185 ACCATGGTGATGCATAACAACG 59.577 45.455 18.99 0.00 0.00 4.10
3413 8394 2.682352 CCATGGTGATGCATAACAACGA 59.318 45.455 16.28 2.90 0.00 3.85
3414 8395 3.242837 CCATGGTGATGCATAACAACGAG 60.243 47.826 16.28 2.78 0.00 4.18
3415 8396 3.326836 TGGTGATGCATAACAACGAGA 57.673 42.857 16.28 0.00 0.00 4.04
3416 8397 3.261580 TGGTGATGCATAACAACGAGAG 58.738 45.455 16.28 0.00 0.00 3.20
3417 8398 3.056179 TGGTGATGCATAACAACGAGAGA 60.056 43.478 16.28 0.00 0.00 3.10
3418 8399 3.553511 GGTGATGCATAACAACGAGAGAG 59.446 47.826 16.28 0.00 0.00 3.20
3419 8400 3.553511 GTGATGCATAACAACGAGAGAGG 59.446 47.826 9.51 0.00 0.00 3.69
3420 8401 3.447229 TGATGCATAACAACGAGAGAGGA 59.553 43.478 0.00 0.00 0.00 3.71
3421 8402 3.510388 TGCATAACAACGAGAGAGGAG 57.490 47.619 0.00 0.00 0.00 3.69
3422 8403 3.089284 TGCATAACAACGAGAGAGGAGA 58.911 45.455 0.00 0.00 0.00 3.71
3423 8404 3.129462 TGCATAACAACGAGAGAGGAGAG 59.871 47.826 0.00 0.00 0.00 3.20
3424 8405 3.129638 GCATAACAACGAGAGAGGAGAGT 59.870 47.826 0.00 0.00 0.00 3.24
3425 8406 4.667262 CATAACAACGAGAGAGGAGAGTG 58.333 47.826 0.00 0.00 0.00 3.51
3426 8407 2.279935 ACAACGAGAGAGGAGAGTGT 57.720 50.000 0.00 0.00 0.00 3.55
3427 8408 2.588620 ACAACGAGAGAGGAGAGTGTT 58.411 47.619 0.00 0.00 0.00 3.32
3428 8409 2.294791 ACAACGAGAGAGGAGAGTGTTG 59.705 50.000 0.00 0.00 40.61 3.33
3429 8410 2.279935 ACGAGAGAGGAGAGTGTTGT 57.720 50.000 0.00 0.00 0.00 3.32
3430 8411 2.156098 ACGAGAGAGGAGAGTGTTGTC 58.844 52.381 0.00 0.00 0.00 3.18
3431 8412 1.470890 CGAGAGAGGAGAGTGTTGTCC 59.529 57.143 0.00 0.00 37.02 4.02
3432 8413 2.520069 GAGAGAGGAGAGTGTTGTCCA 58.480 52.381 0.00 0.00 39.21 4.02
3433 8414 3.096092 GAGAGAGGAGAGTGTTGTCCAT 58.904 50.000 0.00 0.00 39.21 3.41
3434 8415 2.830923 AGAGAGGAGAGTGTTGTCCATG 59.169 50.000 0.00 0.00 39.21 3.66
3435 8416 2.564947 GAGAGGAGAGTGTTGTCCATGT 59.435 50.000 0.00 0.00 39.21 3.21
3436 8417 3.764434 GAGAGGAGAGTGTTGTCCATGTA 59.236 47.826 0.00 0.00 39.21 2.29
3437 8418 3.511934 AGAGGAGAGTGTTGTCCATGTAC 59.488 47.826 0.00 0.00 39.21 2.90
3438 8419 2.567615 AGGAGAGTGTTGTCCATGTACC 59.432 50.000 0.00 0.00 39.21 3.34
3439 8420 2.354805 GGAGAGTGTTGTCCATGTACCC 60.355 54.545 0.00 0.00 36.76 3.69
3440 8421 2.567615 GAGAGTGTTGTCCATGTACCCT 59.432 50.000 0.00 0.00 0.00 4.34
3441 8422 2.567615 AGAGTGTTGTCCATGTACCCTC 59.432 50.000 0.00 0.00 0.00 4.30
3442 8423 1.275291 AGTGTTGTCCATGTACCCTCG 59.725 52.381 0.00 0.00 0.00 4.63
3443 8424 1.001633 GTGTTGTCCATGTACCCTCGT 59.998 52.381 0.00 0.00 0.00 4.18
3444 8425 2.231964 GTGTTGTCCATGTACCCTCGTA 59.768 50.000 0.00 0.00 0.00 3.43
3445 8426 2.494471 TGTTGTCCATGTACCCTCGTAG 59.506 50.000 0.00 0.00 0.00 3.51
3446 8427 2.756760 GTTGTCCATGTACCCTCGTAGA 59.243 50.000 0.00 0.00 0.00 2.59
3447 8428 2.372264 TGTCCATGTACCCTCGTAGAC 58.628 52.381 0.00 0.00 0.00 2.59
3448 8429 1.680207 GTCCATGTACCCTCGTAGACC 59.320 57.143 0.00 0.00 0.00 3.85
3449 8430 0.666913 CCATGTACCCTCGTAGACCG 59.333 60.000 0.00 0.00 38.13 4.79
3450 8431 1.386533 CATGTACCCTCGTAGACCGT 58.613 55.000 0.00 0.00 37.94 4.83
3451 8432 2.564771 CATGTACCCTCGTAGACCGTA 58.435 52.381 0.00 0.00 37.94 4.02
3452 8433 2.779755 TGTACCCTCGTAGACCGTAA 57.220 50.000 0.00 0.00 37.94 3.18
3453 8434 2.632377 TGTACCCTCGTAGACCGTAAG 58.368 52.381 0.00 0.00 37.94 2.34
3454 8435 1.332065 GTACCCTCGTAGACCGTAAGC 59.668 57.143 0.00 0.00 37.94 3.09
3455 8436 1.354506 CCCTCGTAGACCGTAAGCG 59.645 63.158 0.00 0.00 37.94 4.68
3472 8453 3.850207 CGGAAGCGTTATGACAACG 57.150 52.632 5.22 5.22 45.56 4.10
3479 8460 0.785378 CGTTATGACAACGCGGTTGA 59.215 50.000 22.26 6.79 45.28 3.18
3480 8461 1.392168 CGTTATGACAACGCGGTTGAT 59.608 47.619 22.26 12.10 45.28 2.57
3481 8462 2.769376 GTTATGACAACGCGGTTGATG 58.231 47.619 22.26 11.18 45.28 3.07
3482 8463 2.087501 TATGACAACGCGGTTGATGT 57.912 45.000 22.26 13.84 45.28 3.06
3483 8464 2.087501 ATGACAACGCGGTTGATGTA 57.912 45.000 22.26 9.68 45.28 2.29
3484 8465 1.424403 TGACAACGCGGTTGATGTAG 58.576 50.000 22.26 1.41 45.28 2.74
3485 8466 1.269883 TGACAACGCGGTTGATGTAGT 60.270 47.619 22.26 4.69 45.28 2.73
3486 8467 1.389106 GACAACGCGGTTGATGTAGTC 59.611 52.381 22.26 10.01 45.28 2.59
3487 8468 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
3488 8469 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
3489 8470 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
3490 8471 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
3491 8472 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
3492 8473 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
3493 8474 2.434761 CGGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
3494 8475 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
3495 8476 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
3496 8477 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
3497 8478 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
3498 8479 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
3509 8490 3.920144 GTCTTCACGATCGACCGAT 57.080 52.632 24.34 4.42 37.59 4.18
3510 8491 1.744374 GTCTTCACGATCGACCGATC 58.256 55.000 24.34 19.20 45.42 3.69
3511 8492 0.661552 TCTTCACGATCGACCGATCC 59.338 55.000 24.34 8.63 45.95 3.36
3512 8493 0.663688 CTTCACGATCGACCGATCCT 59.336 55.000 24.34 11.28 45.95 3.24
3513 8494 1.871676 CTTCACGATCGACCGATCCTA 59.128 52.381 24.34 8.71 45.95 2.94
3514 8495 1.509703 TCACGATCGACCGATCCTAG 58.490 55.000 24.34 13.23 45.95 3.02
3515 8496 1.202615 TCACGATCGACCGATCCTAGT 60.203 52.381 24.34 13.76 45.95 2.57
3516 8497 2.036346 TCACGATCGACCGATCCTAGTA 59.964 50.000 24.34 5.51 45.95 1.82
3517 8498 2.157279 CACGATCGACCGATCCTAGTAC 59.843 54.545 24.34 1.87 45.95 2.73
3518 8499 1.731160 CGATCGACCGATCCTAGTACC 59.269 57.143 22.02 1.24 45.95 3.34
3519 8500 1.731160 GATCGACCGATCCTAGTACCG 59.269 57.143 18.61 0.00 43.71 4.02
3520 8501 0.752658 TCGACCGATCCTAGTACCGA 59.247 55.000 0.00 0.00 0.00 4.69
3521 8502 1.138859 TCGACCGATCCTAGTACCGAA 59.861 52.381 0.00 0.00 0.00 4.30
3522 8503 1.942657 CGACCGATCCTAGTACCGAAA 59.057 52.381 0.00 0.00 0.00 3.46
3523 8504 2.032204 CGACCGATCCTAGTACCGAAAG 60.032 54.545 0.00 0.00 0.00 2.62
3524 8505 2.948315 GACCGATCCTAGTACCGAAAGT 59.052 50.000 0.00 0.00 0.00 2.66
3525 8506 4.130118 GACCGATCCTAGTACCGAAAGTA 58.870 47.826 0.00 0.00 0.00 2.24
3534 8515 4.180496 CCGAAAGTACGGCACCTC 57.820 61.111 0.00 0.00 46.20 3.85
3535 8516 1.447314 CCGAAAGTACGGCACCTCC 60.447 63.158 0.00 0.00 46.20 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 5.505173 AAATGTTTCAATATCCTGCGAGG 57.495 39.130 0.00 0.00 36.46 4.63
155 161 8.570068 TGGTACATTTGGTAGAATTAAGTTCC 57.430 34.615 0.00 0.00 37.56 3.62
213 222 4.080015 CCCCAATGAATGAGGTAGGTACAA 60.080 45.833 0.00 0.00 0.00 2.41
235 244 3.294214 AGGAAATTCTGATGGATGTGCC 58.706 45.455 0.00 0.00 37.10 5.01
312 321 8.529476 AGAGTCGGATGTGTATATTTAATACCC 58.471 37.037 0.00 0.00 0.00 3.69
317 326 7.014326 AGCAGAGAGTCGGATGTGTATATTTAA 59.986 37.037 0.00 0.00 0.00 1.52
323 332 2.660572 AGCAGAGAGTCGGATGTGTAT 58.339 47.619 0.00 0.00 0.00 2.29
337 346 5.700832 TCAAACACAACCTGTTATAGCAGAG 59.299 40.000 17.34 10.08 42.70 3.35
341 350 5.682943 TGTCAAACACAACCTGTTATAGC 57.317 39.130 0.00 0.00 42.70 2.97
363 372 0.553819 ATCGCTCCTCCCTCACTAGT 59.446 55.000 0.00 0.00 0.00 2.57
394 403 3.393089 ACACTGAAGCGAGTCAAAGAT 57.607 42.857 0.00 0.00 0.00 2.40
395 404 2.890808 ACACTGAAGCGAGTCAAAGA 57.109 45.000 0.00 0.00 0.00 2.52
400 409 4.433022 CGATTACAAACACTGAAGCGAGTC 60.433 45.833 0.00 0.00 0.00 3.36
426 435 6.656693 ACATTCAGATTCAAAGACCACCTAAG 59.343 38.462 0.00 0.00 0.00 2.18
459 468 7.613801 TGGAAGCAGCCAAGACTAAAAATAATA 59.386 33.333 0.00 0.00 34.31 0.98
469 478 0.694771 TCATGGAAGCAGCCAAGACT 59.305 50.000 1.44 0.00 42.16 3.24
472 481 1.201647 CTTGTCATGGAAGCAGCCAAG 59.798 52.381 1.44 0.00 42.16 3.61
492 501 7.852945 ACGCAAAATTTTCGATCTATTCATCTC 59.147 33.333 21.41 0.00 0.00 2.75
539 552 9.638239 GTGAAAAGCTTAAACATGGATTTATGA 57.362 29.630 0.00 0.00 0.00 2.15
611 625 7.362920 CCAAGCTAGTAATTTTTGCTGGTACAT 60.363 37.037 0.00 0.00 38.20 2.29
615 633 4.321974 GCCAAGCTAGTAATTTTTGCTGGT 60.322 41.667 0.00 0.00 33.96 4.00
685 703 3.306088 CGCTATGGTTCTATAGGGTGTGG 60.306 52.174 0.00 0.00 38.24 4.17
692 710 3.697045 CCCTCCTCGCTATGGTTCTATAG 59.303 52.174 0.00 0.00 34.48 1.31
699 717 1.051812 CATTCCCTCCTCGCTATGGT 58.948 55.000 0.00 0.00 0.00 3.55
700 718 1.342074 TCATTCCCTCCTCGCTATGG 58.658 55.000 0.00 0.00 0.00 2.74
702 720 1.341531 CGTTCATTCCCTCCTCGCTAT 59.658 52.381 0.00 0.00 0.00 2.97
703 721 0.744874 CGTTCATTCCCTCCTCGCTA 59.255 55.000 0.00 0.00 0.00 4.26
704 722 0.970937 TCGTTCATTCCCTCCTCGCT 60.971 55.000 0.00 0.00 0.00 4.93
706 724 0.818296 AGTCGTTCATTCCCTCCTCG 59.182 55.000 0.00 0.00 0.00 4.63
707 725 2.758979 TGTAGTCGTTCATTCCCTCCTC 59.241 50.000 0.00 0.00 0.00 3.71
708 726 2.761208 CTGTAGTCGTTCATTCCCTCCT 59.239 50.000 0.00 0.00 0.00 3.69
709 727 2.496470 ACTGTAGTCGTTCATTCCCTCC 59.504 50.000 0.00 0.00 0.00 4.30
710 728 3.870633 ACTGTAGTCGTTCATTCCCTC 57.129 47.619 0.00 0.00 0.00 4.30
711 729 4.597004 TCTACTGTAGTCGTTCATTCCCT 58.403 43.478 14.11 0.00 0.00 4.20
712 730 4.639310 TCTCTACTGTAGTCGTTCATTCCC 59.361 45.833 14.11 0.00 0.00 3.97
775 4192 2.289820 TGTTGCCGACTAGCTCTATACG 59.710 50.000 0.00 0.00 0.00 3.06
780 4197 1.608283 GGTTTGTTGCCGACTAGCTCT 60.608 52.381 0.00 0.00 0.00 4.09
783 4200 0.605589 AGGGTTTGTTGCCGACTAGC 60.606 55.000 0.00 0.00 0.00 3.42
787 4204 1.652563 GTCAGGGTTTGTTGCCGAC 59.347 57.895 0.00 0.00 0.00 4.79
791 4208 1.098712 TCGTGGTCAGGGTTTGTTGC 61.099 55.000 0.00 0.00 0.00 4.17
792 4209 0.944386 CTCGTGGTCAGGGTTTGTTG 59.056 55.000 0.00 0.00 0.00 3.33
793 4210 0.544697 ACTCGTGGTCAGGGTTTGTT 59.455 50.000 0.00 0.00 0.00 2.83
794 4211 0.179056 CACTCGTGGTCAGGGTTTGT 60.179 55.000 0.00 0.00 0.00 2.83
795 4212 0.884704 CCACTCGTGGTCAGGGTTTG 60.885 60.000 7.93 0.00 45.53 2.93
796 4213 1.450211 CCACTCGTGGTCAGGGTTT 59.550 57.895 7.93 0.00 45.53 3.27
797 4214 3.148084 CCACTCGTGGTCAGGGTT 58.852 61.111 7.93 0.00 45.53 4.11
871 4662 2.426023 GGCCCGCCTATACACCAG 59.574 66.667 0.00 0.00 0.00 4.00
947 4738 4.007644 CACTCAGGTGGCGCTCCA 62.008 66.667 20.23 0.00 39.59 3.86
955 4746 2.625737 CTGCTACAATCCACTCAGGTG 58.374 52.381 0.00 0.00 42.65 4.00
956 4747 1.065854 GCTGCTACAATCCACTCAGGT 60.066 52.381 0.00 0.00 39.02 4.00
957 4748 1.065926 TGCTGCTACAATCCACTCAGG 60.066 52.381 0.00 0.00 39.47 3.86
958 4749 2.391616 TGCTGCTACAATCCACTCAG 57.608 50.000 0.00 0.00 0.00 3.35
959 4750 2.420547 GGATGCTGCTACAATCCACTCA 60.421 50.000 10.81 0.00 0.00 3.41
960 4751 2.216898 GGATGCTGCTACAATCCACTC 58.783 52.381 10.81 0.00 0.00 3.51
961 4752 1.561076 TGGATGCTGCTACAATCCACT 59.439 47.619 13.60 0.00 36.58 4.00
962 4753 2.042686 TGGATGCTGCTACAATCCAC 57.957 50.000 13.60 0.00 36.58 4.02
963 4754 2.440627 AGATGGATGCTGCTACAATCCA 59.559 45.455 18.25 18.25 44.44 3.41
964 4755 3.137446 AGATGGATGCTGCTACAATCC 57.863 47.619 9.20 9.20 0.00 3.01
965 4756 4.792057 GCAAAGATGGATGCTGCTACAATC 60.792 45.833 0.00 3.77 39.46 2.67
966 4757 3.067742 GCAAAGATGGATGCTGCTACAAT 59.932 43.478 0.00 0.00 39.46 2.71
967 4758 2.424601 GCAAAGATGGATGCTGCTACAA 59.575 45.455 0.00 0.00 39.46 2.41
968 4759 2.019249 GCAAAGATGGATGCTGCTACA 58.981 47.619 0.00 0.00 39.46 2.74
969 4760 2.019249 TGCAAAGATGGATGCTGCTAC 58.981 47.619 0.00 0.00 42.97 3.58
970 4761 2.294979 CTGCAAAGATGGATGCTGCTA 58.705 47.619 0.00 0.00 42.97 3.49
971 4762 1.103803 CTGCAAAGATGGATGCTGCT 58.896 50.000 0.00 0.00 42.97 4.24
972 4763 3.642901 CTGCAAAGATGGATGCTGC 57.357 52.632 0.00 0.00 42.97 5.25
973 4764 1.103803 AGCTGCAAAGATGGATGCTG 58.896 50.000 1.02 0.00 42.97 4.41
974 4765 1.103803 CAGCTGCAAAGATGGATGCT 58.896 50.000 0.00 0.00 42.97 3.79
975 4766 0.527817 GCAGCTGCAAAGATGGATGC 60.528 55.000 33.36 1.32 42.86 3.91
976 4767 1.065701 GAGCAGCTGCAAAGATGGATG 59.934 52.381 38.24 0.00 45.16 3.51
977 4768 1.390565 GAGCAGCTGCAAAGATGGAT 58.609 50.000 38.24 16.27 45.16 3.41
978 4769 1.022982 CGAGCAGCTGCAAAGATGGA 61.023 55.000 38.24 0.00 45.16 3.41
999 4790 1.410737 CGTCCGTACGGCAAGACATG 61.411 60.000 29.64 12.58 45.50 3.21
1752 5570 1.750399 CCCGATTGCCCAGACCTTG 60.750 63.158 0.00 0.00 0.00 3.61
2307 6178 4.390556 ACCGCTCTCTCCAGGGCT 62.391 66.667 0.00 0.00 45.14 5.19
2480 6351 1.080093 GCGTCATGAACCTCCACGA 60.080 57.895 0.00 0.00 32.08 4.35
2524 6395 4.944619 TCCTGATCGATCATACAGCTTT 57.055 40.909 27.43 0.00 36.02 3.51
2527 6398 5.574830 GTGTTATCCTGATCGATCATACAGC 59.425 44.000 27.43 16.10 36.02 4.40
2530 6401 6.682746 ACTGTGTTATCCTGATCGATCATAC 58.317 40.000 27.43 18.82 36.02 2.39
2531 6402 6.901081 ACTGTGTTATCCTGATCGATCATA 57.099 37.500 27.43 18.81 36.02 2.15
2532 6403 5.798125 ACTGTGTTATCCTGATCGATCAT 57.202 39.130 27.43 15.97 36.02 2.45
2538 6409 4.487714 TCCCAACTGTGTTATCCTGATC 57.512 45.455 0.00 0.00 0.00 2.92
2546 6417 3.767131 TCTGATCGATCCCAACTGTGTTA 59.233 43.478 22.31 0.00 0.00 2.41
2549 6420 2.967599 TCTGATCGATCCCAACTGTG 57.032 50.000 22.31 3.35 0.00 3.66
2550 6421 3.801698 CATTCTGATCGATCCCAACTGT 58.198 45.455 22.31 0.00 0.00 3.55
2551 6422 2.547211 GCATTCTGATCGATCCCAACTG 59.453 50.000 22.31 13.62 0.00 3.16
2580 6451 7.041721 TGACTATATGATGAAGAAAACTGCGT 58.958 34.615 0.00 0.00 0.00 5.24
2581 6452 7.468922 TGACTATATGATGAAGAAAACTGCG 57.531 36.000 0.00 0.00 0.00 5.18
2591 6462 8.713971 ACCACCTGTTTATGACTATATGATGAA 58.286 33.333 0.00 0.00 0.00 2.57
2608 6483 1.157870 CGAAGTGCGAACCACCTGTT 61.158 55.000 0.00 0.00 45.83 3.16
2620 6496 1.935873 TCATAATCTGCTGCGAAGTGC 59.064 47.619 0.00 0.00 46.70 4.40
2621 6497 4.604843 TTTCATAATCTGCTGCGAAGTG 57.395 40.909 0.00 0.00 0.00 3.16
2622 6498 5.587844 AGAATTTCATAATCTGCTGCGAAGT 59.412 36.000 0.00 0.00 0.00 3.01
2623 6499 6.057627 AGAATTTCATAATCTGCTGCGAAG 57.942 37.500 0.00 0.00 0.00 3.79
2624 6500 7.442062 TGATAGAATTTCATAATCTGCTGCGAA 59.558 33.333 0.00 0.00 0.00 4.70
2628 6504 9.491675 AGTCTGATAGAATTTCATAATCTGCTG 57.508 33.333 0.00 0.00 0.00 4.41
2630 6506 8.229137 GCAGTCTGATAGAATTTCATAATCTGC 58.771 37.037 3.32 0.00 35.26 4.26
2648 6524 3.173151 TCTTTATCAGGTGGCAGTCTGA 58.827 45.455 18.73 18.73 43.15 3.27
2649 6525 3.616956 TCTTTATCAGGTGGCAGTCTG 57.383 47.619 10.51 10.51 0.00 3.51
2650 6526 3.181471 CGATCTTTATCAGGTGGCAGTCT 60.181 47.826 0.00 0.00 31.93 3.24
2651 6527 3.126831 CGATCTTTATCAGGTGGCAGTC 58.873 50.000 0.00 0.00 31.93 3.51
2652 6528 2.158900 CCGATCTTTATCAGGTGGCAGT 60.159 50.000 0.00 0.00 31.93 4.40
2653 6529 2.103094 TCCGATCTTTATCAGGTGGCAG 59.897 50.000 0.00 0.00 31.64 4.85
2654 6530 2.115427 TCCGATCTTTATCAGGTGGCA 58.885 47.619 0.00 0.00 31.64 4.92
2655 6531 2.910688 TCCGATCTTTATCAGGTGGC 57.089 50.000 0.00 0.00 31.64 5.01
2656 6532 4.562347 CCAGATCCGATCTTTATCAGGTGG 60.562 50.000 8.26 1.14 37.58 4.61
2657 6533 4.281941 TCCAGATCCGATCTTTATCAGGTG 59.718 45.833 8.26 0.00 37.58 4.00
2665 6541 1.691434 GCTCCTCCAGATCCGATCTTT 59.309 52.381 8.26 0.00 37.58 2.52
2681 6557 2.109126 GGGCGTTGACATCTGCTCC 61.109 63.158 0.00 0.00 0.00 4.70
2697 6574 5.371526 ACTAACATATGCTTGATGACAGGG 58.628 41.667 1.58 0.00 0.00 4.45
2699 6576 7.279536 AGTTGACTAACATATGCTTGATGACAG 59.720 37.037 1.58 0.00 39.30 3.51
2741 7527 1.153939 GTCTGCTCGACGATGCTGT 60.154 57.895 16.48 0.00 32.04 4.40
2759 7545 1.401552 CAGGCCCATACAAATGACACG 59.598 52.381 0.00 0.00 34.84 4.49
2774 7560 1.209504 TGGTCTAACATGCTACAGGCC 59.790 52.381 0.00 0.00 40.92 5.19
2776 7562 2.501723 AGGTGGTCTAACATGCTACAGG 59.498 50.000 0.00 0.00 0.00 4.00
2784 7570 2.817839 GCCCAACAAGGTGGTCTAACAT 60.818 50.000 3.07 0.00 36.90 2.71
2791 7577 2.113139 CGAGCCCAACAAGGTGGT 59.887 61.111 3.07 0.00 36.90 4.16
2803 7589 4.551024 GCTTTCGAAAATAGATGTCGAGCC 60.551 45.833 12.41 0.00 43.93 4.70
2811 7597 5.528690 TGCAGCATAGCTTTCGAAAATAGAT 59.471 36.000 12.41 1.49 36.40 1.98
2815 7601 4.168760 GTTGCAGCATAGCTTTCGAAAAT 58.831 39.130 12.41 6.30 36.40 1.82
2817 7603 2.095263 GGTTGCAGCATAGCTTTCGAAA 60.095 45.455 10.71 10.71 36.40 3.46
2819 7605 1.086696 GGTTGCAGCATAGCTTTCGA 58.913 50.000 2.05 0.00 36.40 3.71
2820 7606 0.247814 CGGTTGCAGCATAGCTTTCG 60.248 55.000 2.05 0.00 36.40 3.46
2825 7611 2.825836 AGGCGGTTGCAGCATAGC 60.826 61.111 2.05 2.00 45.35 2.97
2826 7612 2.528743 CGAGGCGGTTGCAGCATAG 61.529 63.158 2.05 0.00 45.35 2.23
2830 7616 2.200170 AAAATCGAGGCGGTTGCAGC 62.200 55.000 0.00 0.00 45.35 5.25
2836 7622 1.940613 GCTAATGAAAATCGAGGCGGT 59.059 47.619 0.00 0.00 0.00 5.68
2838 7624 2.866156 TCAGCTAATGAAAATCGAGGCG 59.134 45.455 0.00 0.00 34.02 5.52
2852 7638 0.094558 CGCGCGTGAAATTCAGCTAA 59.905 50.000 24.19 0.00 0.00 3.09
2856 7642 0.725784 AAAGCGCGCGTGAAATTCAG 60.726 50.000 32.35 0.00 0.00 3.02
2865 7651 1.881252 ATTCCGATAAAGCGCGCGT 60.881 52.632 32.35 21.73 0.00 6.01
2868 7654 1.190323 GTCTCATTCCGATAAAGCGCG 59.810 52.381 0.00 0.00 0.00 6.86
2870 7656 4.302455 AGATGTCTCATTCCGATAAAGCG 58.698 43.478 0.00 0.00 0.00 4.68
2873 7659 7.504574 TGGTACTAGATGTCTCATTCCGATAAA 59.495 37.037 0.00 0.00 0.00 1.40
2875 7661 6.540083 TGGTACTAGATGTCTCATTCCGATA 58.460 40.000 0.00 0.00 0.00 2.92
2876 7662 5.386060 TGGTACTAGATGTCTCATTCCGAT 58.614 41.667 0.00 0.00 0.00 4.18
2884 7671 5.278758 GCTCTCCAATGGTACTAGATGTCTC 60.279 48.000 0.00 0.00 0.00 3.36
2890 7677 3.632604 CGAAGCTCTCCAATGGTACTAGA 59.367 47.826 0.00 0.00 0.00 2.43
2892 7679 3.362706 ACGAAGCTCTCCAATGGTACTA 58.637 45.455 0.00 0.00 0.00 1.82
2897 7684 2.672961 TGTACGAAGCTCTCCAATGG 57.327 50.000 0.00 0.00 0.00 3.16
2903 7690 4.495422 TGATTTCCTTGTACGAAGCTCTC 58.505 43.478 0.00 0.00 0.00 3.20
2905 7692 7.484035 AATATGATTTCCTTGTACGAAGCTC 57.516 36.000 0.00 0.00 0.00 4.09
2908 7695 7.694388 TCGAATATGATTTCCTTGTACGAAG 57.306 36.000 0.00 0.00 0.00 3.79
2909 7696 7.709182 ACATCGAATATGATTTCCTTGTACGAA 59.291 33.333 0.00 0.00 0.00 3.85
2940 7920 7.572523 AATCTGCGAGGAATTCATGAAAATA 57.427 32.000 13.09 0.00 0.00 1.40
2949 7929 4.122776 TGCTCTTAATCTGCGAGGAATTC 58.877 43.478 0.00 0.00 0.00 2.17
2952 7932 2.497675 ACTGCTCTTAATCTGCGAGGAA 59.502 45.455 0.00 0.00 0.00 3.36
3006 7986 9.834628 GAAAATAAGGTCAAAATACGATTCACA 57.165 29.630 0.00 0.00 0.00 3.58
3032 8013 2.206750 TGTCGTTCCGAGAAACCTTTG 58.793 47.619 0.00 0.00 36.23 2.77
3036 8017 3.678915 TTTTTGTCGTTCCGAGAAACC 57.321 42.857 8.23 0.00 45.80 3.27
3041 8022 6.355638 GCTATATCATTTTTGTCGTTCCGAG 58.644 40.000 0.00 0.00 36.23 4.63
3042 8023 5.051307 CGCTATATCATTTTTGTCGTTCCGA 60.051 40.000 0.00 0.00 0.00 4.55
3044 8025 6.044512 ACGCTATATCATTTTTGTCGTTCC 57.955 37.500 0.00 0.00 0.00 3.62
3045 8026 6.410914 CCAACGCTATATCATTTTTGTCGTTC 59.589 38.462 0.00 0.00 35.80 3.95
3047 8028 5.583061 TCCAACGCTATATCATTTTTGTCGT 59.417 36.000 0.00 0.00 0.00 4.34
3053 8034 9.651913 AACAAATTTCCAACGCTATATCATTTT 57.348 25.926 0.00 0.00 0.00 1.82
3066 8047 2.131972 GGGTCGCAACAAATTTCCAAC 58.868 47.619 0.00 0.00 0.00 3.77
3081 8062 0.673644 ACATGAAAAGGAGCGGGTCG 60.674 55.000 0.00 0.00 0.00 4.79
3084 8065 2.691409 TCTACATGAAAAGGAGCGGG 57.309 50.000 0.00 0.00 0.00 6.13
3139 8120 8.711457 CGCATTCAAATTTCCTTCACTTTTAAT 58.289 29.630 0.00 0.00 0.00 1.40
3143 8124 5.841810 TCGCATTCAAATTTCCTTCACTTT 58.158 33.333 0.00 0.00 0.00 2.66
3155 8136 5.277974 CCCAAAGATACGATCGCATTCAAAT 60.278 40.000 16.60 0.00 0.00 2.32
3192 8173 0.798159 TGCTGCATTACGACAAGCTG 59.202 50.000 0.00 0.00 0.00 4.24
3194 8175 2.330231 TTTGCTGCATTACGACAAGC 57.670 45.000 1.84 0.00 0.00 4.01
3196 8177 4.700268 ATGATTTGCTGCATTACGACAA 57.300 36.364 1.84 0.00 0.00 3.18
3207 8188 3.696281 TCAACGCCATATGATTTGCTG 57.304 42.857 3.65 0.00 0.00 4.41
3222 8203 3.842083 GCATTTGCACAAGCTTTTCAACG 60.842 43.478 0.00 0.00 42.74 4.10
3259 8240 9.157104 ACCGTAAAGAATTTGTGAAAATGTTTT 57.843 25.926 0.00 0.00 39.63 2.43
3260 8241 8.710835 ACCGTAAAGAATTTGTGAAAATGTTT 57.289 26.923 0.00 0.00 39.63 2.83
3261 8242 8.710835 AACCGTAAAGAATTTGTGAAAATGTT 57.289 26.923 0.00 0.00 39.63 2.71
3262 8243 8.710835 AAACCGTAAAGAATTTGTGAAAATGT 57.289 26.923 0.00 0.00 39.63 2.71
3265 8246 9.857957 ACTTAAACCGTAAAGAATTTGTGAAAA 57.142 25.926 1.56 0.00 39.63 2.29
3266 8247 9.857957 AACTTAAACCGTAAAGAATTTGTGAAA 57.142 25.926 1.56 0.00 39.63 2.69
3267 8248 9.291664 CAACTTAAACCGTAAAGAATTTGTGAA 57.708 29.630 1.56 0.00 39.63 3.18
3268 8249 8.675504 TCAACTTAAACCGTAAAGAATTTGTGA 58.324 29.630 1.56 0.00 39.63 3.58
3269 8250 8.844441 TCAACTTAAACCGTAAAGAATTTGTG 57.156 30.769 1.56 0.00 39.63 3.33
3270 8251 9.292846 GTTCAACTTAAACCGTAAAGAATTTGT 57.707 29.630 1.56 0.00 39.63 2.83
3271 8252 9.511144 AGTTCAACTTAAACCGTAAAGAATTTG 57.489 29.630 0.00 0.00 39.63 2.32
3282 8263 6.252655 CCAGTTTGAAAGTTCAACTTAAACCG 59.747 38.462 18.85 12.28 45.99 4.44
3296 8277 4.766404 ATAACTTCCGCCAGTTTGAAAG 57.234 40.909 3.11 0.00 38.07 2.62
3301 8282 5.508994 CCTTCAAAATAACTTCCGCCAGTTT 60.509 40.000 3.11 0.00 38.07 2.66
3304 8285 3.673323 GCCTTCAAAATAACTTCCGCCAG 60.673 47.826 0.00 0.00 0.00 4.85
3308 8289 4.413495 TTCGCCTTCAAAATAACTTCCG 57.587 40.909 0.00 0.00 0.00 4.30
3327 8308 7.666623 TCCCCAACATGTTCTTCTTAAATTTC 58.333 34.615 8.48 0.00 0.00 2.17
3333 8314 4.069304 CGTTCCCCAACATGTTCTTCTTA 58.931 43.478 8.48 0.00 32.14 2.10
3339 8320 2.774687 ACTACGTTCCCCAACATGTTC 58.225 47.619 8.48 0.00 32.14 3.18
3342 8323 5.413213 TGAAATTACTACGTTCCCCAACATG 59.587 40.000 0.00 0.00 32.14 3.21
3343 8324 5.562635 TGAAATTACTACGTTCCCCAACAT 58.437 37.500 0.00 0.00 32.14 2.71
3344 8325 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
3345 8326 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
3346 8327 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
3347 8328 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
3368 8349 2.894307 GCGTCTGCGTAGGAATTTTT 57.106 45.000 0.00 0.00 40.81 1.94
3380 8361 0.664166 CACCATGGTTTTGCGTCTGC 60.664 55.000 16.84 0.00 43.20 4.26
3381 8362 0.950836 TCACCATGGTTTTGCGTCTG 59.049 50.000 16.84 0.01 0.00 3.51
3382 8363 1.541147 CATCACCATGGTTTTGCGTCT 59.459 47.619 16.84 0.00 0.00 4.18
3383 8364 1.981254 CATCACCATGGTTTTGCGTC 58.019 50.000 16.84 0.00 0.00 5.19
3384 8365 0.038343 GCATCACCATGGTTTTGCGT 60.038 50.000 25.31 4.34 0.00 5.24
3385 8366 0.038435 TGCATCACCATGGTTTTGCG 60.038 50.000 29.90 15.87 36.67 4.85
3386 8367 2.389962 ATGCATCACCATGGTTTTGC 57.610 45.000 29.63 29.63 35.33 3.68
3387 8368 4.818642 TGTTATGCATCACCATGGTTTTG 58.181 39.130 16.84 16.53 0.00 2.44
3388 8369 5.237048 GTTGTTATGCATCACCATGGTTTT 58.763 37.500 16.84 1.95 0.00 2.43
3389 8370 4.617995 CGTTGTTATGCATCACCATGGTTT 60.618 41.667 16.84 2.39 0.00 3.27
3390 8371 3.119531 CGTTGTTATGCATCACCATGGTT 60.120 43.478 16.84 1.46 0.00 3.67
3391 8372 2.423185 CGTTGTTATGCATCACCATGGT 59.577 45.455 13.00 13.00 0.00 3.55
3392 8373 2.682352 TCGTTGTTATGCATCACCATGG 59.318 45.455 11.19 11.19 0.00 3.66
3393 8374 3.622612 TCTCGTTGTTATGCATCACCATG 59.377 43.478 0.19 0.00 0.00 3.66
3394 8375 3.872696 TCTCGTTGTTATGCATCACCAT 58.127 40.909 0.19 0.00 0.00 3.55
3395 8376 3.056179 TCTCTCGTTGTTATGCATCACCA 60.056 43.478 0.19 0.00 0.00 4.17
3396 8377 3.521560 TCTCTCGTTGTTATGCATCACC 58.478 45.455 0.19 0.00 0.00 4.02
3397 8378 3.553511 CCTCTCTCGTTGTTATGCATCAC 59.446 47.826 0.19 2.46 0.00 3.06
3398 8379 3.447229 TCCTCTCTCGTTGTTATGCATCA 59.553 43.478 0.19 0.00 0.00 3.07
3399 8380 4.046938 TCCTCTCTCGTTGTTATGCATC 57.953 45.455 0.19 0.00 0.00 3.91
3400 8381 3.701542 TCTCCTCTCTCGTTGTTATGCAT 59.298 43.478 3.79 3.79 0.00 3.96
3401 8382 3.089284 TCTCCTCTCTCGTTGTTATGCA 58.911 45.455 0.00 0.00 0.00 3.96
3402 8383 3.129638 ACTCTCCTCTCTCGTTGTTATGC 59.870 47.826 0.00 0.00 0.00 3.14
3403 8384 4.156922 ACACTCTCCTCTCTCGTTGTTATG 59.843 45.833 0.00 0.00 0.00 1.90
3404 8385 4.337145 ACACTCTCCTCTCTCGTTGTTAT 58.663 43.478 0.00 0.00 0.00 1.89
3405 8386 3.752665 ACACTCTCCTCTCTCGTTGTTA 58.247 45.455 0.00 0.00 0.00 2.41
3406 8387 2.588620 ACACTCTCCTCTCTCGTTGTT 58.411 47.619 0.00 0.00 0.00 2.83
3407 8388 2.279935 ACACTCTCCTCTCTCGTTGT 57.720 50.000 0.00 0.00 0.00 3.32
3408 8389 2.294791 ACAACACTCTCCTCTCTCGTTG 59.705 50.000 0.00 0.00 38.51 4.10
3409 8390 2.554893 GACAACACTCTCCTCTCTCGTT 59.445 50.000 0.00 0.00 0.00 3.85
3410 8391 2.156098 GACAACACTCTCCTCTCTCGT 58.844 52.381 0.00 0.00 0.00 4.18
3411 8392 1.470890 GGACAACACTCTCCTCTCTCG 59.529 57.143 0.00 0.00 0.00 4.04
3412 8393 2.520069 TGGACAACACTCTCCTCTCTC 58.480 52.381 0.00 0.00 0.00 3.20
3413 8394 2.685106 TGGACAACACTCTCCTCTCT 57.315 50.000 0.00 0.00 0.00 3.10
3414 8395 2.564947 ACATGGACAACACTCTCCTCTC 59.435 50.000 0.00 0.00 0.00 3.20
3415 8396 2.614259 ACATGGACAACACTCTCCTCT 58.386 47.619 0.00 0.00 0.00 3.69
3416 8397 3.368531 GGTACATGGACAACACTCTCCTC 60.369 52.174 10.99 0.00 0.00 3.71
3417 8398 2.567615 GGTACATGGACAACACTCTCCT 59.432 50.000 10.99 0.00 0.00 3.69
3418 8399 2.354805 GGGTACATGGACAACACTCTCC 60.355 54.545 10.99 0.00 0.00 3.71
3419 8400 2.567615 AGGGTACATGGACAACACTCTC 59.432 50.000 10.99 0.00 0.00 3.20
3420 8401 2.567615 GAGGGTACATGGACAACACTCT 59.432 50.000 10.99 0.00 39.95 3.24
3421 8402 2.674177 CGAGGGTACATGGACAACACTC 60.674 54.545 10.99 10.60 39.74 3.51
3422 8403 1.275291 CGAGGGTACATGGACAACACT 59.725 52.381 10.99 2.21 0.00 3.55
3423 8404 1.001633 ACGAGGGTACATGGACAACAC 59.998 52.381 10.99 0.00 0.00 3.32
3424 8405 1.344065 ACGAGGGTACATGGACAACA 58.656 50.000 10.99 0.00 0.00 3.33
3425 8406 2.756760 TCTACGAGGGTACATGGACAAC 59.243 50.000 10.99 1.81 0.00 3.32
3426 8407 2.756760 GTCTACGAGGGTACATGGACAA 59.243 50.000 10.99 0.00 0.00 3.18
3427 8408 2.372264 GTCTACGAGGGTACATGGACA 58.628 52.381 10.99 0.00 0.00 4.02
3428 8409 1.680207 GGTCTACGAGGGTACATGGAC 59.320 57.143 0.00 0.00 0.00 4.02
3429 8410 2.062971 GGTCTACGAGGGTACATGGA 57.937 55.000 0.00 0.00 0.00 3.41
3448 8429 1.254570 GTCATAACGCTTCCGCTTACG 59.745 52.381 0.00 0.00 38.22 3.18
3449 8430 2.264813 TGTCATAACGCTTCCGCTTAC 58.735 47.619 0.00 0.00 38.22 2.34
3450 8431 2.658373 TGTCATAACGCTTCCGCTTA 57.342 45.000 0.00 0.00 38.22 3.09
3451 8432 1.463444 GTTGTCATAACGCTTCCGCTT 59.537 47.619 0.00 0.00 38.22 4.68
3452 8433 1.076332 GTTGTCATAACGCTTCCGCT 58.924 50.000 0.00 0.00 38.22 5.52
3453 8434 0.247145 CGTTGTCATAACGCTTCCGC 60.247 55.000 0.00 0.00 36.82 5.54
3454 8435 3.850207 CGTTGTCATAACGCTTCCG 57.150 52.632 0.00 0.00 36.82 4.30
3460 8441 0.785378 TCAACCGCGTTGTCATAACG 59.215 50.000 16.97 1.71 43.23 3.18
3461 8442 2.158841 ACATCAACCGCGTTGTCATAAC 59.841 45.455 16.97 0.00 43.23 1.89
3462 8443 2.418692 ACATCAACCGCGTTGTCATAA 58.581 42.857 16.97 2.99 43.23 1.90
3463 8444 2.087501 ACATCAACCGCGTTGTCATA 57.912 45.000 16.97 3.28 43.23 2.15
3464 8445 1.999735 CTACATCAACCGCGTTGTCAT 59.000 47.619 16.97 5.85 43.23 3.06
3465 8446 1.269883 ACTACATCAACCGCGTTGTCA 60.270 47.619 16.97 4.13 43.23 3.58
3466 8447 1.389106 GACTACATCAACCGCGTTGTC 59.611 52.381 16.97 5.64 43.23 3.18
3467 8448 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
3468 8449 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
3469 8450 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
3470 8451 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
3471 8452 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
3472 8453 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
3473 8454 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
3474 8455 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
3475 8456 4.552660 GTGAAGACGTACGACTACATCAAC 59.447 45.833 24.41 11.90 0.00 3.18
3476 8457 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
3477 8458 3.181527 CGTGAAGACGTACGACTACATCA 60.182 47.826 24.41 18.00 42.54 3.07
3478 8459 3.061295 TCGTGAAGACGTACGACTACATC 59.939 47.826 24.41 15.62 46.20 3.06
3479 8460 2.995939 TCGTGAAGACGTACGACTACAT 59.004 45.455 24.41 6.17 46.20 2.29
3480 8461 2.403259 TCGTGAAGACGTACGACTACA 58.597 47.619 24.41 13.28 46.20 2.74
3486 8467 1.440790 GTCGATCGTGAAGACGTACG 58.559 55.000 15.01 15.01 46.20 3.67
3487 8468 1.807738 GGTCGATCGTGAAGACGTAC 58.192 55.000 15.94 2.00 46.20 3.67
3488 8469 0.371301 CGGTCGATCGTGAAGACGTA 59.629 55.000 15.94 0.00 46.20 3.57
3489 8470 1.134075 CGGTCGATCGTGAAGACGT 59.866 57.895 15.94 0.00 46.20 4.34
3491 8472 1.744374 GATCGGTCGATCGTGAAGAC 58.256 55.000 19.01 5.12 41.09 3.01
3500 8481 1.345741 TCGGTACTAGGATCGGTCGAT 59.654 52.381 8.01 5.49 37.59 3.59
3501 8482 0.752658 TCGGTACTAGGATCGGTCGA 59.247 55.000 8.01 0.00 0.00 4.20
3502 8483 1.586422 TTCGGTACTAGGATCGGTCG 58.414 55.000 8.01 0.00 0.00 4.79
3503 8484 2.948315 ACTTTCGGTACTAGGATCGGTC 59.052 50.000 8.01 0.00 0.00 4.79
3504 8485 3.010200 ACTTTCGGTACTAGGATCGGT 57.990 47.619 8.01 0.00 0.00 4.69
3505 8486 3.059325 CGTACTTTCGGTACTAGGATCGG 60.059 52.174 8.01 0.00 46.19 4.18
3506 8487 3.059325 CCGTACTTTCGGTACTAGGATCG 60.059 52.174 0.00 0.00 46.19 3.69
3507 8488 4.480386 CCGTACTTTCGGTACTAGGATC 57.520 50.000 0.00 0.00 46.19 3.36
3518 8499 4.180496 GGAGGTGCCGTACTTTCG 57.820 61.111 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.