Multiple sequence alignment - TraesCS1D01G118600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G118600 chr1D 100.000 7485 0 0 1 7485 114360964 114353480 0.000000e+00 13823
1 TraesCS1D01G118600 chr1A 97.769 4707 89 15 2026 6724 124890767 124886069 0.000000e+00 8096
2 TraesCS1D01G118600 chr1A 91.610 1335 47 24 37 1319 124892771 124891450 0.000000e+00 1784
3 TraesCS1D01G118600 chr1A 94.637 634 31 3 1320 1952 124891395 124890764 0.000000e+00 979
4 TraesCS1D01G118600 chr1A 87.129 303 21 7 7180 7480 124885912 124885626 2.010000e-85 327
5 TraesCS1D01G118600 chr1A 86.709 158 18 3 7018 7175 124886015 124885861 9.980000e-39 172
6 TraesCS1D01G118600 chr1B 97.875 2870 47 11 3862 6724 175418456 175415594 0.000000e+00 4950
7 TraesCS1D01G118600 chr1B 97.319 2499 57 9 1349 3842 175421068 175418575 0.000000e+00 4235
8 TraesCS1D01G118600 chr1B 89.400 1349 51 25 1 1274 175422535 175421204 0.000000e+00 1615
9 TraesCS1D01G118600 chr1B 88.814 295 18 8 7180 7471 175415350 175415068 1.550000e-91 348
10 TraesCS1D01G118600 chr1B 90.678 118 7 4 6979 7093 175415471 175415355 3.620000e-33 154
11 TraesCS1D01G118600 chr3B 83.537 492 66 15 3958 4445 133769607 133770087 5.330000e-121 446
12 TraesCS1D01G118600 chr7A 91.379 232 16 1 6738 6965 39411479 39411248 1.570000e-81 315
13 TraesCS1D01G118600 chr6B 92.453 159 7 1 6759 6912 181711581 181711423 9.780000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G118600 chr1D 114353480 114360964 7484 True 13823.0 13823 100.0000 1 7485 1 chr1D.!!$R1 7484
1 TraesCS1D01G118600 chr1A 124885626 124892771 7145 True 2271.6 8096 91.5708 37 7480 5 chr1A.!!$R1 7443
2 TraesCS1D01G118600 chr1B 175415068 175422535 7467 True 2260.4 4950 92.8172 1 7471 5 chr1B.!!$R1 7470

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 1057 0.563173 ATCTTCTCTCCCCCGATGGA 59.437 55.000 0.00 0.00 35.39 3.41 F
1221 1336 0.032217 TTCCAATGCCTCAATCCCCC 60.032 55.000 0.00 0.00 0.00 5.40 F
1307 1432 0.249114 AAATTTGGCGCGTCCGTTTT 60.249 45.000 8.89 1.75 37.80 2.43 F
1999 2194 0.973632 ATGTGCTCCTACCGTGTTCA 59.026 50.000 0.00 0.00 0.00 3.18 F
3803 4000 1.202188 GGTTAGGCAAAAGCGAGCATC 60.202 52.381 0.00 0.00 0.00 3.91 F
3814 4011 0.659417 GCGAGCATCCAATTGCATCG 60.659 55.000 0.00 5.87 45.23 3.84 F
5072 5371 4.405358 TGTGGTCTTCTTGGCTTTTCAATT 59.595 37.500 0.00 0.00 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 2175 0.973632 TGAACACGGTAGGAGCACAT 59.026 50.000 0.00 0.00 0.00 3.21 R
2364 2559 2.073816 AGTTCTATTTTGGACGCCACG 58.926 47.619 0.00 0.00 30.78 4.94 R
3153 3349 3.863424 CGTTAGCGTACCATCTGAAACAT 59.137 43.478 0.00 0.00 0.00 2.71 R
3814 4011 1.247567 TTGAGGTAAAAGCAGCTGCC 58.752 50.000 34.39 18.67 43.38 4.85 R
4649 4947 1.344953 TAGAGCCCCGCAACCATCAT 61.345 55.000 0.00 0.00 0.00 2.45 R
5106 5405 1.672881 CGCCTAATTTGAGCCAAGAGG 59.327 52.381 0.00 0.00 38.23 3.69 R
6800 7122 0.107703 TGGGAGGTCAAGCGCTTATG 60.108 55.000 24.55 13.11 0.00 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.050089 ATGCCTTCCTTTTGCCGAA 57.950 47.368 0.00 0.00 0.00 4.30
56 69 8.598202 TTGCAGGAATGAATATATTATGGCAT 57.402 30.769 4.88 4.88 0.00 4.40
62 75 8.689061 GGAATGAATATATTATGGCATGAGCAA 58.311 33.333 10.98 0.00 44.61 3.91
68 81 6.904463 ATATTATGGCATGAGCAATGTTGA 57.096 33.333 10.98 0.00 44.61 3.18
70 83 5.601583 TTATGGCATGAGCAATGTTGATT 57.398 34.783 10.98 0.00 44.61 2.57
71 84 6.712179 TTATGGCATGAGCAATGTTGATTA 57.288 33.333 10.98 0.00 44.61 1.75
72 85 4.642445 TGGCATGAGCAATGTTGATTAG 57.358 40.909 0.00 0.00 44.61 1.73
73 86 4.018490 TGGCATGAGCAATGTTGATTAGT 58.982 39.130 0.00 0.00 44.61 2.24
74 87 5.192176 TGGCATGAGCAATGTTGATTAGTA 58.808 37.500 0.00 0.00 44.61 1.82
75 88 5.066375 TGGCATGAGCAATGTTGATTAGTAC 59.934 40.000 0.00 0.00 44.61 2.73
167 181 8.202137 GTGATGTTTACTGGTAGCTAAATCCTA 58.798 37.037 0.00 0.00 0.00 2.94
178 192 5.644977 AGCTAAATCCTAAACCAACTTGC 57.355 39.130 0.00 0.00 0.00 4.01
220 257 3.136763 CTGAATCAAGCAGCGTGGATAT 58.863 45.455 8.59 0.00 0.00 1.63
226 263 3.833706 GCAGCGTGGATATTTCTGC 57.166 52.632 0.00 0.00 42.46 4.26
265 302 4.871557 TGTGATTGCTATTGTTACGGTACC 59.128 41.667 0.16 0.16 0.00 3.34
306 344 2.004733 GTATGAGGTTACACAACGGGC 58.995 52.381 0.00 0.00 35.34 6.13
418 465 3.329386 CCATTGTACAGGTCACACTGAG 58.671 50.000 0.00 0.00 40.97 3.35
547 630 0.792356 GCGTACGTCTCGTCCAAGTC 60.792 60.000 17.90 0.00 41.54 3.01
753 841 1.298993 CTGTCCTGCTGCCTGACAT 59.701 57.895 17.88 0.00 38.26 3.06
757 845 2.745100 CTGCTGCCTGACATGCGT 60.745 61.111 0.00 0.00 0.00 5.24
833 927 1.533625 CTCCATTCAAACCCGCAAGA 58.466 50.000 0.00 0.00 43.02 3.02
926 1020 2.073101 AGAGAGGGAAATCGGGGGC 61.073 63.158 0.00 0.00 0.00 5.80
963 1057 0.563173 ATCTTCTCTCCCCCGATGGA 59.437 55.000 0.00 0.00 35.39 3.41
1064 1179 2.123077 CCTCCTCCTCCTGCCGAT 60.123 66.667 0.00 0.00 0.00 4.18
1129 1244 2.808315 CACTACGGCGCATCTCCT 59.192 61.111 10.83 0.00 0.00 3.69
1221 1336 0.032217 TTCCAATGCCTCAATCCCCC 60.032 55.000 0.00 0.00 0.00 5.40
1245 1360 0.601558 CTCGAAAGTTCCTCCACGGA 59.398 55.000 0.00 0.00 41.06 4.69
1295 1420 4.300803 CCATGCGGATATGTCAAATTTGG 58.699 43.478 17.90 0.75 0.00 3.28
1305 1430 1.371145 CAAATTTGGCGCGTCCGTT 60.371 52.632 8.89 0.00 37.80 4.44
1306 1431 0.937231 CAAATTTGGCGCGTCCGTTT 60.937 50.000 8.89 3.53 37.80 3.60
1307 1432 0.249114 AAATTTGGCGCGTCCGTTTT 60.249 45.000 8.89 1.75 37.80 2.43
1308 1433 0.249114 AATTTGGCGCGTCCGTTTTT 60.249 45.000 8.89 0.11 37.80 1.94
1398 1592 3.305813 CCAATTTGTTCATCTGCAGCAGT 60.306 43.478 22.10 6.97 32.61 4.40
1594 1788 2.618559 GGCCCCAAACATGCATGATTTT 60.619 45.455 32.75 19.92 0.00 1.82
1700 1894 4.710375 AGATCTGGCAGCTTGATTGATTTT 59.290 37.500 10.34 0.00 0.00 1.82
1709 1903 6.091713 GCAGCTTGATTGATTTTGTTAAGCAT 59.908 34.615 0.00 0.00 40.93 3.79
1717 1911 6.528537 TGATTTTGTTAAGCATAGCATGGT 57.471 33.333 1.62 1.62 43.93 3.55
1773 1968 1.040339 TGGCGTTTGCTTCCCTTTGT 61.040 50.000 0.00 0.00 42.25 2.83
1974 2169 6.039159 TCTCAGCTGTCAAGATAGTCATACAG 59.961 42.308 14.67 0.00 37.87 2.74
1999 2194 0.973632 ATGTGCTCCTACCGTGTTCA 59.026 50.000 0.00 0.00 0.00 3.18
2364 2559 4.992381 ACGAGATGCTGTTTTACTTGAC 57.008 40.909 0.00 0.00 0.00 3.18
2466 2661 9.778741 TGAACAAGTAGTTTCAAATATGACTCT 57.221 29.630 0.00 0.00 41.51 3.24
3056 3252 6.462500 ACTGTCATGATATGCTACATCCTTC 58.538 40.000 0.00 0.00 0.00 3.46
3088 3284 1.680735 TCCATGTGGCACTTGACAAAC 59.319 47.619 28.92 0.00 32.99 2.93
3410 3606 4.377021 TGTGATTGTCTTTCAGTTACGCT 58.623 39.130 0.00 0.00 0.00 5.07
3697 3894 2.303022 TCCATCTTTCTCGACTTTGGCT 59.697 45.455 0.00 0.00 0.00 4.75
3803 4000 1.202188 GGTTAGGCAAAAGCGAGCATC 60.202 52.381 0.00 0.00 0.00 3.91
3814 4011 0.659417 GCGAGCATCCAATTGCATCG 60.659 55.000 0.00 5.87 45.23 3.84
3915 4213 7.060600 TGTATCTGTTAGAAACATGAAAGCG 57.939 36.000 0.00 0.00 41.26 4.68
4072 4370 5.430886 TGGTAGACGCTTACTCACTACATA 58.569 41.667 0.00 0.00 36.26 2.29
4277 4575 6.828273 TGGTTTGTCATATTTCTCCATGTAGG 59.172 38.462 0.00 0.00 39.47 3.18
5072 5371 4.405358 TGTGGTCTTCTTGGCTTTTCAATT 59.595 37.500 0.00 0.00 0.00 2.32
5106 5405 1.817099 CCTTGCTCATCTGCCGTCC 60.817 63.158 0.00 0.00 0.00 4.79
5228 5527 9.729281 ATGCAAGAAGTTTTCATTAAAATGGAT 57.271 25.926 0.00 0.00 36.96 3.41
5334 5633 0.038892 TTAACGTCGCACAGGAGGAC 60.039 55.000 0.00 0.00 0.00 3.85
5650 5949 3.722082 GCGCTTACAACTTCTGTTCATCG 60.722 47.826 0.00 0.00 39.64 3.84
5877 6176 1.986882 CCAGATATTGGCCTTCACCC 58.013 55.000 3.32 0.00 40.87 4.61
6008 6307 2.552315 GCTCCCGAAATTCTTTGACACA 59.448 45.455 0.00 0.00 0.00 3.72
6114 6414 0.179004 TGTCACTCCCGGTTGCATTT 60.179 50.000 0.00 0.00 0.00 2.32
6115 6415 1.072489 TGTCACTCCCGGTTGCATTTA 59.928 47.619 0.00 0.00 0.00 1.40
6116 6416 1.467342 GTCACTCCCGGTTGCATTTAC 59.533 52.381 0.00 0.00 0.00 2.01
6119 6419 2.936498 CACTCCCGGTTGCATTTACTAG 59.064 50.000 0.00 0.00 0.00 2.57
6220 6520 2.292267 GAATCCATCACACGAGGCATT 58.708 47.619 0.00 0.00 0.00 3.56
6259 6559 2.025767 CTGCCGAGGTGATGGAGGAG 62.026 65.000 0.00 0.00 0.00 3.69
6491 6794 1.028330 TACACGGCCCTGACTACGAG 61.028 60.000 8.88 0.00 0.00 4.18
6618 6922 0.314302 AGACACGTCGAGGAAACTGG 59.686 55.000 12.85 0.00 44.43 4.00
6622 6927 2.027625 CGTCGAGGAAACTGGGCAC 61.028 63.158 0.00 0.00 41.38 5.01
6685 6990 2.470286 GTGCGCGAGTGTTGCTAC 59.530 61.111 12.10 0.00 0.00 3.58
6693 6998 1.917955 CGAGTGTTGCTACGTATGTGG 59.082 52.381 0.00 0.00 0.00 4.17
6707 7012 3.181511 CGTATGTGGTGTTGTGCATAAGG 60.182 47.826 0.00 0.00 0.00 2.69
6708 7013 0.958091 TGTGGTGTTGTGCATAAGGC 59.042 50.000 0.00 0.00 45.13 4.35
6720 7025 3.722728 GCATAAGGCAAGAAATGGGAG 57.277 47.619 0.00 0.00 43.97 4.30
6724 7029 0.850883 AGGCAAGAAATGGGAGGGGA 60.851 55.000 0.00 0.00 0.00 4.81
6727 7032 2.489802 GGCAAGAAATGGGAGGGGATAG 60.490 54.545 0.00 0.00 0.00 2.08
6730 7035 1.076438 GAAATGGGAGGGGATAGGGG 58.924 60.000 0.00 0.00 0.00 4.79
6731 7036 1.074296 AAATGGGAGGGGATAGGGGC 61.074 60.000 0.00 0.00 0.00 5.80
6734 7039 2.290745 GGAGGGGATAGGGGCAGT 59.709 66.667 0.00 0.00 0.00 4.40
6735 7040 1.843832 GGAGGGGATAGGGGCAGTC 60.844 68.421 0.00 0.00 0.00 3.51
6736 7041 1.237458 GAGGGGATAGGGGCAGTCT 59.763 63.158 0.00 0.00 0.00 3.24
6737 7042 0.487772 GAGGGGATAGGGGCAGTCTA 59.512 60.000 0.00 0.00 0.00 2.59
6738 7043 0.489567 AGGGGATAGGGGCAGTCTAG 59.510 60.000 0.00 0.00 0.00 2.43
6739 7044 0.191314 GGGGATAGGGGCAGTCTAGT 59.809 60.000 0.00 0.00 0.00 2.57
6740 7045 1.414685 GGGGATAGGGGCAGTCTAGTT 60.415 57.143 0.00 0.00 0.00 2.24
6741 7046 2.158204 GGGGATAGGGGCAGTCTAGTTA 60.158 54.545 0.00 0.00 0.00 2.24
6742 7047 3.166679 GGGATAGGGGCAGTCTAGTTAG 58.833 54.545 0.00 0.00 0.00 2.34
6743 7048 3.166679 GGATAGGGGCAGTCTAGTTAGG 58.833 54.545 0.00 0.00 0.00 2.69
6744 7049 2.769602 TAGGGGCAGTCTAGTTAGGG 57.230 55.000 0.00 0.00 0.00 3.53
6746 7051 0.981277 GGGGCAGTCTAGTTAGGGCA 60.981 60.000 0.00 0.00 0.00 5.36
6747 7052 1.132500 GGGCAGTCTAGTTAGGGCAT 58.868 55.000 0.00 0.00 0.00 4.40
6749 7054 2.043227 GGCAGTCTAGTTAGGGCATCT 58.957 52.381 0.00 0.00 0.00 2.90
6750 7055 2.036604 GGCAGTCTAGTTAGGGCATCTC 59.963 54.545 0.00 0.00 0.00 2.75
6751 7056 2.036604 GCAGTCTAGTTAGGGCATCTCC 59.963 54.545 0.00 0.00 0.00 3.71
6752 7057 3.300388 CAGTCTAGTTAGGGCATCTCCA 58.700 50.000 0.00 0.00 36.21 3.86
6753 7058 3.706594 CAGTCTAGTTAGGGCATCTCCAA 59.293 47.826 0.00 0.00 36.21 3.53
6754 7059 3.707102 AGTCTAGTTAGGGCATCTCCAAC 59.293 47.826 0.00 0.00 36.21 3.77
6755 7060 2.693591 TCTAGTTAGGGCATCTCCAACG 59.306 50.000 0.00 0.00 36.21 4.10
6757 7062 0.463833 GTTAGGGCATCTCCAACGGG 60.464 60.000 0.00 0.00 36.21 5.28
6758 7063 0.619255 TTAGGGCATCTCCAACGGGA 60.619 55.000 0.00 0.00 42.29 5.14
6775 7097 4.303086 CGGGAGACGCTTATAGAGAAAA 57.697 45.455 0.00 0.00 34.82 2.29
6807 7129 9.676899 GCTATTAAATTCGAGAATACATAAGCG 57.323 33.333 0.00 0.00 0.00 4.68
6809 7131 7.709269 TTAAATTCGAGAATACATAAGCGCT 57.291 32.000 2.64 2.64 0.00 5.92
6810 7132 6.604735 AAATTCGAGAATACATAAGCGCTT 57.395 33.333 27.97 27.97 0.00 4.68
6811 7133 5.582439 ATTCGAGAATACATAAGCGCTTG 57.418 39.130 32.23 20.04 0.00 4.01
6812 7134 4.301637 TCGAGAATACATAAGCGCTTGA 57.698 40.909 32.23 16.31 0.00 3.02
6813 7135 4.042398 TCGAGAATACATAAGCGCTTGAC 58.958 43.478 32.23 14.18 0.00 3.18
6814 7136 3.182572 CGAGAATACATAAGCGCTTGACC 59.817 47.826 32.23 13.38 0.00 4.02
6816 7138 4.372656 AGAATACATAAGCGCTTGACCTC 58.627 43.478 32.23 18.91 0.00 3.85
6817 7139 2.596904 TACATAAGCGCTTGACCTCC 57.403 50.000 32.23 0.00 0.00 4.30
6818 7140 0.107654 ACATAAGCGCTTGACCTCCC 60.108 55.000 32.23 0.00 0.00 4.30
6819 7141 0.107703 CATAAGCGCTTGACCTCCCA 60.108 55.000 32.23 10.34 0.00 4.37
6820 7142 0.618458 ATAAGCGCTTGACCTCCCAA 59.382 50.000 32.23 9.54 0.00 4.12
6821 7143 0.321298 TAAGCGCTTGACCTCCCAAC 60.321 55.000 32.23 0.00 0.00 3.77
6822 7144 3.423154 GCGCTTGACCTCCCAACG 61.423 66.667 0.00 0.00 0.00 4.10
6823 7145 3.423154 CGCTTGACCTCCCAACGC 61.423 66.667 0.00 0.00 0.00 4.84
6824 7146 3.056328 GCTTGACCTCCCAACGCC 61.056 66.667 0.00 0.00 0.00 5.68
6853 7175 4.750460 GCCGGTGCTAATCGATCA 57.250 55.556 1.90 0.00 33.53 2.92
6854 7176 2.226269 GCCGGTGCTAATCGATCAC 58.774 57.895 1.90 2.47 33.53 3.06
6855 7177 0.249489 GCCGGTGCTAATCGATCACT 60.249 55.000 13.52 0.00 33.53 3.41
6856 7178 1.000607 GCCGGTGCTAATCGATCACTA 60.001 52.381 13.52 0.00 33.53 2.74
6857 7179 2.545113 GCCGGTGCTAATCGATCACTAA 60.545 50.000 13.52 0.00 33.53 2.24
6858 7180 3.861131 GCCGGTGCTAATCGATCACTAAT 60.861 47.826 13.52 0.00 33.53 1.73
6859 7181 4.307432 CCGGTGCTAATCGATCACTAATT 58.693 43.478 13.52 0.00 0.00 1.40
6860 7182 5.466819 CCGGTGCTAATCGATCACTAATTA 58.533 41.667 13.52 0.00 0.00 1.40
6861 7183 5.924254 CCGGTGCTAATCGATCACTAATTAA 59.076 40.000 13.52 0.00 0.00 1.40
6862 7184 6.422701 CCGGTGCTAATCGATCACTAATTAAA 59.577 38.462 13.52 0.00 0.00 1.52
6863 7185 7.281484 CGGTGCTAATCGATCACTAATTAAAC 58.719 38.462 13.52 0.00 0.00 2.01
6864 7186 7.042992 CGGTGCTAATCGATCACTAATTAAACA 60.043 37.037 13.52 0.00 0.00 2.83
6865 7187 8.276325 GGTGCTAATCGATCACTAATTAAACAG 58.724 37.037 13.52 0.00 0.00 3.16
6866 7188 7.794349 GTGCTAATCGATCACTAATTAAACAGC 59.206 37.037 0.00 0.00 0.00 4.40
6867 7189 7.004225 GCTAATCGATCACTAATTAAACAGCG 58.996 38.462 0.00 0.00 0.00 5.18
6868 7190 7.096189 GCTAATCGATCACTAATTAAACAGCGA 60.096 37.037 0.00 0.00 0.00 4.93
6869 7191 7.534085 AATCGATCACTAATTAAACAGCGAA 57.466 32.000 0.00 0.00 0.00 4.70
6870 7192 6.327177 TCGATCACTAATTAAACAGCGAAC 57.673 37.500 0.00 0.00 0.00 3.95
6871 7193 5.290158 TCGATCACTAATTAAACAGCGAACC 59.710 40.000 0.00 0.00 0.00 3.62
6872 7194 5.501897 CGATCACTAATTAAACAGCGAACCC 60.502 44.000 0.00 0.00 0.00 4.11
6873 7195 4.643463 TCACTAATTAAACAGCGAACCCA 58.357 39.130 0.00 0.00 0.00 4.51
6874 7196 5.250200 TCACTAATTAAACAGCGAACCCAT 58.750 37.500 0.00 0.00 0.00 4.00
6875 7197 5.353123 TCACTAATTAAACAGCGAACCCATC 59.647 40.000 0.00 0.00 0.00 3.51
6876 7198 5.354234 CACTAATTAAACAGCGAACCCATCT 59.646 40.000 0.00 0.00 0.00 2.90
6877 7199 5.944007 ACTAATTAAACAGCGAACCCATCTT 59.056 36.000 0.00 0.00 0.00 2.40
6878 7200 5.722021 AATTAAACAGCGAACCCATCTTT 57.278 34.783 0.00 0.00 0.00 2.52
6879 7201 5.722021 ATTAAACAGCGAACCCATCTTTT 57.278 34.783 0.00 0.00 0.00 2.27
6880 7202 6.827586 ATTAAACAGCGAACCCATCTTTTA 57.172 33.333 0.00 0.00 0.00 1.52
6881 7203 4.499037 AAACAGCGAACCCATCTTTTAC 57.501 40.909 0.00 0.00 0.00 2.01
6882 7204 2.073816 ACAGCGAACCCATCTTTTACG 58.926 47.619 0.00 0.00 0.00 3.18
6883 7205 2.289195 ACAGCGAACCCATCTTTTACGA 60.289 45.455 0.00 0.00 0.00 3.43
6884 7206 2.348666 CAGCGAACCCATCTTTTACGAG 59.651 50.000 0.00 0.00 0.00 4.18
6885 7207 1.664151 GCGAACCCATCTTTTACGAGG 59.336 52.381 0.00 0.00 0.00 4.63
6886 7208 2.277084 CGAACCCATCTTTTACGAGGG 58.723 52.381 0.00 0.00 45.20 4.30
6887 7209 2.093869 CGAACCCATCTTTTACGAGGGA 60.094 50.000 2.29 0.00 42.25 4.20
6888 7210 3.532542 GAACCCATCTTTTACGAGGGAG 58.467 50.000 2.29 0.00 42.25 4.30
6889 7211 2.829023 ACCCATCTTTTACGAGGGAGA 58.171 47.619 2.29 0.00 42.25 3.71
6890 7212 3.178865 ACCCATCTTTTACGAGGGAGAA 58.821 45.455 2.29 0.00 42.25 2.87
6891 7213 3.585732 ACCCATCTTTTACGAGGGAGAAA 59.414 43.478 2.29 0.00 42.25 2.52
6892 7214 4.042435 ACCCATCTTTTACGAGGGAGAAAA 59.958 41.667 2.29 0.00 42.25 2.29
6893 7215 4.636206 CCCATCTTTTACGAGGGAGAAAAG 59.364 45.833 0.00 0.00 42.25 2.27
6894 7216 4.636206 CCATCTTTTACGAGGGAGAAAAGG 59.364 45.833 6.52 0.00 39.54 3.11
6895 7217 5.488341 CATCTTTTACGAGGGAGAAAAGGA 58.512 41.667 6.52 0.00 39.54 3.36
6896 7218 5.556006 TCTTTTACGAGGGAGAAAAGGAA 57.444 39.130 6.52 0.00 39.54 3.36
6897 7219 5.303165 TCTTTTACGAGGGAGAAAAGGAAC 58.697 41.667 6.52 0.00 39.54 3.62
6898 7220 4.693042 TTTACGAGGGAGAAAAGGAACA 57.307 40.909 0.00 0.00 0.00 3.18
6899 7221 4.693042 TTACGAGGGAGAAAAGGAACAA 57.307 40.909 0.00 0.00 0.00 2.83
6900 7222 3.127425 ACGAGGGAGAAAAGGAACAAG 57.873 47.619 0.00 0.00 0.00 3.16
6901 7223 1.807142 CGAGGGAGAAAAGGAACAAGC 59.193 52.381 0.00 0.00 0.00 4.01
6902 7224 1.807142 GAGGGAGAAAAGGAACAAGCG 59.193 52.381 0.00 0.00 0.00 4.68
6903 7225 0.881796 GGGAGAAAAGGAACAAGCGG 59.118 55.000 0.00 0.00 0.00 5.52
6904 7226 0.241213 GGAGAAAAGGAACAAGCGGC 59.759 55.000 0.00 0.00 0.00 6.53
6905 7227 0.241213 GAGAAAAGGAACAAGCGGCC 59.759 55.000 0.00 0.00 0.00 6.13
6906 7228 1.081442 GAAAAGGAACAAGCGGCCG 60.081 57.895 24.05 24.05 0.00 6.13
6907 7229 2.472232 GAAAAGGAACAAGCGGCCGG 62.472 60.000 29.38 13.36 0.00 6.13
6908 7230 3.785122 AAAGGAACAAGCGGCCGGT 62.785 57.895 26.97 26.97 0.00 5.28
6930 7252 2.979130 GCTCTTTGCGCCTAGGTAG 58.021 57.895 11.31 6.33 0.00 3.18
6931 7253 1.154814 GCTCTTTGCGCCTAGGTAGC 61.155 60.000 20.04 20.04 0.00 3.58
6947 7269 3.204827 GCGTCCGCTGCCATGATT 61.205 61.111 4.10 0.00 38.26 2.57
6948 7270 3.017323 CGTCCGCTGCCATGATTC 58.983 61.111 0.00 0.00 0.00 2.52
6949 7271 1.522355 CGTCCGCTGCCATGATTCT 60.522 57.895 0.00 0.00 0.00 2.40
6950 7272 0.249447 CGTCCGCTGCCATGATTCTA 60.249 55.000 0.00 0.00 0.00 2.10
6951 7273 1.506493 GTCCGCTGCCATGATTCTAG 58.494 55.000 0.00 0.00 0.00 2.43
6952 7274 0.250038 TCCGCTGCCATGATTCTAGC 60.250 55.000 0.00 0.00 0.00 3.42
6954 7276 1.573436 GCTGCCATGATTCTAGCGC 59.427 57.895 0.00 0.00 0.00 5.92
6955 7277 1.849976 GCTGCCATGATTCTAGCGCC 61.850 60.000 2.29 0.00 0.00 6.53
6956 7278 1.227943 TGCCATGATTCTAGCGCCC 60.228 57.895 2.29 0.00 0.00 6.13
6957 7279 1.227943 GCCATGATTCTAGCGCCCA 60.228 57.895 2.29 0.00 0.00 5.36
6958 7280 1.233285 GCCATGATTCTAGCGCCCAG 61.233 60.000 2.29 1.03 0.00 4.45
6971 7293 4.980702 CCCAGCTGCCAACTGCCA 62.981 66.667 8.66 0.00 41.37 4.92
6972 7294 2.913578 CCAGCTGCCAACTGCCAA 60.914 61.111 8.66 0.00 41.37 4.52
6973 7295 2.280552 CCAGCTGCCAACTGCCAAT 61.281 57.895 8.66 0.00 41.37 3.16
6974 7296 1.669440 CAGCTGCCAACTGCCAATT 59.331 52.632 0.00 0.00 41.37 2.32
6975 7297 0.669318 CAGCTGCCAACTGCCAATTG 60.669 55.000 0.00 0.00 41.37 2.32
6976 7298 0.828762 AGCTGCCAACTGCCAATTGA 60.829 50.000 7.12 0.00 41.37 2.57
6977 7299 0.668401 GCTGCCAACTGCCAATTGAC 60.668 55.000 7.12 0.00 40.16 3.18
7022 7347 0.391927 TTAACTGGAATGGGGACGCG 60.392 55.000 3.53 3.53 0.00 6.01
7032 7357 3.145551 GGGACGCGGCTCCTCTAA 61.146 66.667 13.91 0.00 0.00 2.10
7039 7364 3.131396 ACGCGGCTCCTCTAATTTTATG 58.869 45.455 12.47 0.00 0.00 1.90
7075 7400 3.057337 CCGACCGGTCTCAGGTTT 58.943 61.111 30.92 0.00 43.01 3.27
7080 7405 2.342279 CGGTCTCAGGTTTCGCCA 59.658 61.111 0.00 0.00 40.61 5.69
7116 7441 3.934391 GAGCGTCCTCGTGTTGGGG 62.934 68.421 0.00 0.00 39.49 4.96
7119 7444 3.948719 GTCCTCGTGTTGGGGCCA 61.949 66.667 4.39 0.00 0.00 5.36
7122 7447 2.751436 CTCGTGTTGGGGCCATGG 60.751 66.667 7.63 7.63 0.00 3.66
7159 7484 1.203928 CTATCTCTTTCACGCGCAGG 58.796 55.000 5.73 0.00 0.00 4.85
7163 7488 1.067142 TCTCTTTCACGCGCAGGTATT 60.067 47.619 5.73 0.00 0.00 1.89
7175 7500 2.288213 CGCAGGTATTCGCTCCATTCTA 60.288 50.000 0.00 0.00 0.00 2.10
7176 7501 3.060602 GCAGGTATTCGCTCCATTCTAC 58.939 50.000 0.00 0.00 0.00 2.59
7177 7502 3.309388 CAGGTATTCGCTCCATTCTACG 58.691 50.000 0.00 0.00 0.00 3.51
7178 7503 2.296471 AGGTATTCGCTCCATTCTACGG 59.704 50.000 0.00 0.00 0.00 4.02
7179 7504 2.295349 GGTATTCGCTCCATTCTACGGA 59.705 50.000 0.00 0.00 0.00 4.69
7180 7505 2.510768 ATTCGCTCCATTCTACGGAC 57.489 50.000 0.00 0.00 0.00 4.79
7181 7506 0.458669 TTCGCTCCATTCTACGGACC 59.541 55.000 0.00 0.00 0.00 4.46
7182 7507 1.299165 CGCTCCATTCTACGGACCG 60.299 63.158 13.61 13.61 0.00 4.79
7183 7508 1.814527 GCTCCATTCTACGGACCGT 59.185 57.895 25.14 25.14 44.35 4.83
7184 7509 0.248949 GCTCCATTCTACGGACCGTC 60.249 60.000 25.58 1.22 41.54 4.79
7185 7510 0.384669 CTCCATTCTACGGACCGTCC 59.615 60.000 25.58 7.59 41.54 4.79
7186 7511 0.323633 TCCATTCTACGGACCGTCCA 60.324 55.000 25.58 8.42 41.54 4.02
7187 7512 0.750850 CCATTCTACGGACCGTCCAT 59.249 55.000 25.58 11.18 41.54 3.41
7188 7513 1.269621 CCATTCTACGGACCGTCCATC 60.270 57.143 25.58 0.00 41.54 3.51
7189 7514 1.038280 ATTCTACGGACCGTCCATCC 58.962 55.000 25.58 0.00 41.54 3.51
7190 7515 1.039233 TTCTACGGACCGTCCATCCC 61.039 60.000 25.58 0.00 41.54 3.85
7191 7516 2.442643 TACGGACCGTCCATCCCC 60.443 66.667 25.58 0.00 41.54 4.81
7192 7517 2.923634 CTACGGACCGTCCATCCCCT 62.924 65.000 25.58 0.00 41.54 4.79
7193 7518 2.916527 TACGGACCGTCCATCCCCTC 62.917 65.000 25.58 0.00 41.54 4.30
7194 7519 3.162154 GGACCGTCCATCCCCTCC 61.162 72.222 13.05 0.00 36.28 4.30
7195 7520 2.041819 GACCGTCCATCCCCTCCT 60.042 66.667 0.00 0.00 0.00 3.69
7196 7521 1.232216 GACCGTCCATCCCCTCCTA 59.768 63.158 0.00 0.00 0.00 2.94
7197 7522 0.178929 GACCGTCCATCCCCTCCTAT 60.179 60.000 0.00 0.00 0.00 2.57
7198 7523 0.178929 ACCGTCCATCCCCTCCTATC 60.179 60.000 0.00 0.00 0.00 2.08
7199 7524 0.115349 CCGTCCATCCCCTCCTATCT 59.885 60.000 0.00 0.00 0.00 1.98
7200 7525 1.551452 CGTCCATCCCCTCCTATCTC 58.449 60.000 0.00 0.00 0.00 2.75
7201 7526 1.076350 CGTCCATCCCCTCCTATCTCT 59.924 57.143 0.00 0.00 0.00 3.10
7202 7527 2.491825 CGTCCATCCCCTCCTATCTCTT 60.492 54.545 0.00 0.00 0.00 2.85
7203 7528 3.592865 GTCCATCCCCTCCTATCTCTTT 58.407 50.000 0.00 0.00 0.00 2.52
7204 7529 3.580895 GTCCATCCCCTCCTATCTCTTTC 59.419 52.174 0.00 0.00 0.00 2.62
7205 7530 3.209843 TCCATCCCCTCCTATCTCTTTCA 59.790 47.826 0.00 0.00 0.00 2.69
7206 7531 3.326297 CCATCCCCTCCTATCTCTTTCAC 59.674 52.174 0.00 0.00 0.00 3.18
7207 7532 2.667470 TCCCCTCCTATCTCTTTCACG 58.333 52.381 0.00 0.00 0.00 4.35
7208 7533 1.069358 CCCCTCCTATCTCTTTCACGC 59.931 57.143 0.00 0.00 0.00 5.34
7209 7534 1.757118 CCCTCCTATCTCTTTCACGCA 59.243 52.381 0.00 0.00 0.00 5.24
7210 7535 2.482142 CCCTCCTATCTCTTTCACGCAC 60.482 54.545 0.00 0.00 0.00 5.34
7211 7536 2.166459 CCTCCTATCTCTTTCACGCACA 59.834 50.000 0.00 0.00 0.00 4.57
7212 7537 3.443037 CTCCTATCTCTTTCACGCACAG 58.557 50.000 0.00 0.00 0.00 3.66
7213 7538 2.166459 TCCTATCTCTTTCACGCACAGG 59.834 50.000 0.00 0.00 0.00 4.00
7214 7539 2.093973 CCTATCTCTTTCACGCACAGGT 60.094 50.000 0.00 0.00 0.00 4.00
7215 7540 3.130516 CCTATCTCTTTCACGCACAGGTA 59.869 47.826 0.00 0.00 0.00 3.08
7216 7541 3.895232 ATCTCTTTCACGCACAGGTAT 57.105 42.857 0.00 0.00 0.00 2.73
7217 7542 3.232213 TCTCTTTCACGCACAGGTATC 57.768 47.619 0.00 0.00 0.00 2.24
7218 7543 2.094182 TCTCTTTCACGCACAGGTATCC 60.094 50.000 0.00 0.00 0.00 2.59
7219 7544 0.999406 CTTTCACGCACAGGTATCCG 59.001 55.000 0.00 0.00 0.00 4.18
7220 7545 1.017177 TTTCACGCACAGGTATCCGC 61.017 55.000 0.00 0.00 0.00 5.54
7221 7546 1.884075 TTCACGCACAGGTATCCGCT 61.884 55.000 0.00 0.00 0.00 5.52
7222 7547 1.447838 CACGCACAGGTATCCGCTT 60.448 57.895 0.00 0.00 0.00 4.68
7223 7548 1.153628 ACGCACAGGTATCCGCTTC 60.154 57.895 0.00 0.00 0.00 3.86
7224 7549 1.153647 CGCACAGGTATCCGCTTCA 60.154 57.895 0.00 0.00 0.00 3.02
7225 7550 0.530650 CGCACAGGTATCCGCTTCAT 60.531 55.000 0.00 0.00 0.00 2.57
7226 7551 1.668419 GCACAGGTATCCGCTTCATT 58.332 50.000 0.00 0.00 0.00 2.57
7227 7552 2.017049 GCACAGGTATCCGCTTCATTT 58.983 47.619 0.00 0.00 0.00 2.32
7228 7553 2.423538 GCACAGGTATCCGCTTCATTTT 59.576 45.455 0.00 0.00 0.00 1.82
7229 7554 3.119495 GCACAGGTATCCGCTTCATTTTT 60.119 43.478 0.00 0.00 0.00 1.94
7230 7555 4.095782 GCACAGGTATCCGCTTCATTTTTA 59.904 41.667 0.00 0.00 0.00 1.52
7236 7561 8.137437 CAGGTATCCGCTTCATTTTTATTTCAT 58.863 33.333 0.00 0.00 0.00 2.57
7238 7563 6.833342 ATCCGCTTCATTTTTATTTCATGC 57.167 33.333 0.00 0.00 0.00 4.06
7256 7581 0.461693 GCGCTCAGGCTTCTCATTCT 60.462 55.000 0.00 0.00 36.09 2.40
7262 7587 4.515361 CTCAGGCTTCTCATTCTTGTCAT 58.485 43.478 0.00 0.00 0.00 3.06
7269 7594 8.149647 AGGCTTCTCATTCTTGTCATATCTAAG 58.850 37.037 0.00 0.00 0.00 2.18
7276 7601 6.540438 TTCTTGTCATATCTAAGACCCGTT 57.460 37.500 0.00 0.00 33.89 4.44
7285 7610 1.549170 CTAAGACCCGTTGTAGCCACT 59.451 52.381 0.00 0.00 0.00 4.00
7286 7611 0.763035 AAGACCCGTTGTAGCCACTT 59.237 50.000 0.00 0.00 0.00 3.16
7473 7799 2.330254 CACACGATTTGGTGCTGGT 58.670 52.632 0.00 0.00 41.65 4.00
7474 7800 0.040157 CACACGATTTGGTGCTGGTG 60.040 55.000 0.00 0.00 41.65 4.17
7475 7801 0.465460 ACACGATTTGGTGCTGGTGT 60.465 50.000 0.00 0.00 41.65 4.16
7477 7803 1.172180 ACGATTTGGTGCTGGTGTGG 61.172 55.000 0.00 0.00 0.00 4.17
7479 7805 1.039856 GATTTGGTGCTGGTGTGGTT 58.960 50.000 0.00 0.00 0.00 3.67
7480 7806 1.412343 GATTTGGTGCTGGTGTGGTTT 59.588 47.619 0.00 0.00 0.00 3.27
7481 7807 0.820871 TTTGGTGCTGGTGTGGTTTC 59.179 50.000 0.00 0.00 0.00 2.78
7482 7808 1.380403 TTGGTGCTGGTGTGGTTTCG 61.380 55.000 0.00 0.00 0.00 3.46
7483 7809 1.822186 GGTGCTGGTGTGGTTTCGT 60.822 57.895 0.00 0.00 0.00 3.85
7484 7810 1.355210 GTGCTGGTGTGGTTTCGTG 59.645 57.895 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 6.653020 TCATTCCTGCAAGTCTACATACAAT 58.347 36.000 0.00 0.00 0.00 2.71
56 69 6.934083 TCACAAGTACTAATCAACATTGCTCA 59.066 34.615 0.00 0.00 0.00 4.26
62 75 8.691661 AAAACCTCACAAGTACTAATCAACAT 57.308 30.769 0.00 0.00 0.00 2.71
68 81 5.073965 TGGGGAAAACCTCACAAGTACTAAT 59.926 40.000 0.00 0.00 40.03 1.73
70 83 3.975312 TGGGGAAAACCTCACAAGTACTA 59.025 43.478 0.00 0.00 40.03 1.82
71 84 2.781174 TGGGGAAAACCTCACAAGTACT 59.219 45.455 0.00 0.00 40.03 2.73
72 85 3.217681 TGGGGAAAACCTCACAAGTAC 57.782 47.619 0.00 0.00 40.03 2.73
73 86 3.435890 CCTTGGGGAAAACCTCACAAGTA 60.436 47.826 0.00 0.00 38.18 2.24
74 87 2.666317 CTTGGGGAAAACCTCACAAGT 58.334 47.619 0.00 0.00 36.53 3.16
75 88 1.963515 CCTTGGGGAAAACCTCACAAG 59.036 52.381 0.00 0.00 38.93 3.16
167 181 1.608717 TTGGCACCGCAAGTTGGTTT 61.609 50.000 4.75 0.00 37.72 3.27
178 192 7.433708 TCAGTATAATATCAAATTGGCACCG 57.566 36.000 0.00 0.00 0.00 4.94
220 257 1.946768 CCCGACTGAAACAAGCAGAAA 59.053 47.619 0.00 0.00 36.86 2.52
226 263 2.766313 TCACATCCCGACTGAAACAAG 58.234 47.619 0.00 0.00 0.00 3.16
306 344 2.663602 GCATGCTAACATCGATCCGTAG 59.336 50.000 11.37 0.00 32.87 3.51
331 369 7.095060 GGAATGAGGTGCAACTATACATACATG 60.095 40.741 2.94 0.00 36.74 3.21
337 375 4.019771 TGTGGAATGAGGTGCAACTATACA 60.020 41.667 2.94 0.00 36.74 2.29
338 376 4.332819 GTGTGGAATGAGGTGCAACTATAC 59.667 45.833 2.94 0.00 36.74 1.47
418 465 1.863454 CTTCTCGCAGCCATGTCATAC 59.137 52.381 0.00 0.00 0.00 2.39
547 630 0.804989 GATGCACGTTTCCCTTCCAG 59.195 55.000 0.00 0.00 0.00 3.86
660 748 3.621805 TTCGCTCCAAGCACCGGA 61.622 61.111 9.46 0.00 42.58 5.14
817 911 0.109132 GGCTCTTGCGGGTTTGAATG 60.109 55.000 0.00 0.00 40.82 2.67
963 1057 3.306088 CCGCCTATTTGTAGACCATCGAT 60.306 47.826 0.00 0.00 0.00 3.59
966 1060 2.143925 GCCGCCTATTTGTAGACCATC 58.856 52.381 0.00 0.00 0.00 3.51
1221 1336 1.618837 TGGAGGAACTTTCGAGGTGAG 59.381 52.381 0.00 0.00 41.55 3.51
1245 1360 1.130777 AGCAAACCCAAGCAACCAAT 58.869 45.000 0.00 0.00 0.00 3.16
1307 1432 6.851222 TCAAGAGCAACAAACAAACAAAAA 57.149 29.167 0.00 0.00 0.00 1.94
1308 1433 6.851222 TTCAAGAGCAACAAACAAACAAAA 57.149 29.167 0.00 0.00 0.00 2.44
1309 1434 7.432350 AATTCAAGAGCAACAAACAAACAAA 57.568 28.000 0.00 0.00 0.00 2.83
1312 1437 7.059448 TCAAATTCAAGAGCAACAAACAAAC 57.941 32.000 0.00 0.00 0.00 2.93
1318 1443 4.986034 CAGCATCAAATTCAAGAGCAACAA 59.014 37.500 0.00 0.00 0.00 2.83
1398 1592 1.067416 CCCTACGCGCTCATTGCTA 59.933 57.895 5.73 0.00 40.11 3.49
1409 1603 3.528597 AGAGAGAAATTCACCCTACGC 57.471 47.619 0.00 0.00 0.00 4.42
1594 1788 9.930693 AAATTCACATAAATAAAAAGCGGGTAA 57.069 25.926 0.00 0.00 0.00 2.85
1700 1894 4.136796 GGATGACCATGCTATGCTTAACA 58.863 43.478 0.00 0.00 35.97 2.41
1717 1911 5.231702 TGATAGCACAAGCATATGGATGA 57.768 39.130 4.56 0.00 45.49 2.92
1726 1921 5.623169 TGGATGAATATGATAGCACAAGCA 58.377 37.500 0.00 0.00 45.49 3.91
1980 2175 0.973632 TGAACACGGTAGGAGCACAT 59.026 50.000 0.00 0.00 0.00 3.21
2364 2559 2.073816 AGTTCTATTTTGGACGCCACG 58.926 47.619 0.00 0.00 30.78 4.94
3056 3252 5.047802 AGTGCCACATGGAAAGATAAAAGTG 60.048 40.000 0.87 0.00 37.39 3.16
3088 3284 5.515797 TCCACGACTACATTCTCCTTATG 57.484 43.478 0.00 0.00 0.00 1.90
3153 3349 3.863424 CGTTAGCGTACCATCTGAAACAT 59.137 43.478 0.00 0.00 0.00 2.71
3747 3944 3.101437 TCCTAGTTCGGTTTATGGCTCA 58.899 45.455 0.00 0.00 0.00 4.26
3814 4011 1.247567 TTGAGGTAAAAGCAGCTGCC 58.752 50.000 34.39 18.67 43.38 4.85
3889 4187 8.177663 CGCTTTCATGTTTCTAACAGATACATT 58.822 33.333 8.85 0.00 41.82 2.71
3915 4213 9.788960 ATTTTATTATTTCGAGAGCACTTTTCC 57.211 29.630 0.00 0.00 0.00 3.13
3979 4277 9.403110 CACAATCTTCAATAAGAAAAACTCTGG 57.597 33.333 0.00 0.00 44.75 3.86
4277 4575 5.447818 GGAGACGATTGGTTGATCAAATGTC 60.448 44.000 10.35 11.27 36.23 3.06
4649 4947 1.344953 TAGAGCCCCGCAACCATCAT 61.345 55.000 0.00 0.00 0.00 2.45
4789 5087 5.950023 ACATCCATAATGCCAGAAGAAGAT 58.050 37.500 0.00 0.00 39.12 2.40
5072 5371 5.165961 AGCAAGGTGAAACTGAATAGCTA 57.834 39.130 0.00 0.00 36.74 3.32
5106 5405 1.672881 CGCCTAATTTGAGCCAAGAGG 59.327 52.381 0.00 0.00 38.23 3.69
5228 5527 4.053295 GACTACTTACGTTGCCTTTGTCA 58.947 43.478 0.00 0.00 0.00 3.58
5692 5991 6.957920 TGATGGAAAGAAATGAACAGACAA 57.042 33.333 0.00 0.00 0.00 3.18
5877 6176 7.149569 TCAACAGATAAATCAGCTGGAAAAG 57.850 36.000 15.13 0.00 45.29 2.27
6115 6415 7.976734 GCACATGAGACTAAAAGATGTACTAGT 59.023 37.037 0.00 0.00 0.00 2.57
6116 6416 7.166638 CGCACATGAGACTAAAAGATGTACTAG 59.833 40.741 0.00 0.00 0.00 2.57
6119 6419 5.005779 CCGCACATGAGACTAAAAGATGTAC 59.994 44.000 0.00 0.00 0.00 2.90
6220 6520 5.247110 GGCAGTATATTCAGAGGGATCTTCA 59.753 44.000 0.00 0.00 0.00 3.02
6491 6794 5.066593 AGGTCTTTGTTGAACAATCTCCTC 58.933 41.667 11.97 0.88 38.00 3.71
6685 6990 3.181511 CCTTATGCACAACACCACATACG 60.182 47.826 0.00 0.00 0.00 3.06
6707 7012 2.489802 CCTATCCCCTCCCATTTCTTGC 60.490 54.545 0.00 0.00 0.00 4.01
6708 7013 2.108952 CCCTATCCCCTCCCATTTCTTG 59.891 54.545 0.00 0.00 0.00 3.02
6711 7016 1.076438 CCCCTATCCCCTCCCATTTC 58.924 60.000 0.00 0.00 0.00 2.17
6716 7021 2.530406 CTGCCCCTATCCCCTCCC 60.530 72.222 0.00 0.00 0.00 4.30
6720 7025 0.191314 ACTAGACTGCCCCTATCCCC 59.809 60.000 0.00 0.00 0.00 4.81
6724 7029 2.760372 GCCCTAACTAGACTGCCCCTAT 60.760 54.545 0.00 0.00 0.00 2.57
6727 7032 0.981277 TGCCCTAACTAGACTGCCCC 60.981 60.000 0.00 0.00 0.00 5.80
6730 7035 2.036604 GGAGATGCCCTAACTAGACTGC 59.963 54.545 0.00 0.00 0.00 4.40
6731 7036 3.300388 TGGAGATGCCCTAACTAGACTG 58.700 50.000 0.00 0.00 34.97 3.51
6734 7039 2.693591 CGTTGGAGATGCCCTAACTAGA 59.306 50.000 0.00 0.00 34.97 2.43
6735 7040 2.224066 CCGTTGGAGATGCCCTAACTAG 60.224 54.545 0.00 0.00 34.97 2.57
6736 7041 1.760613 CCGTTGGAGATGCCCTAACTA 59.239 52.381 0.00 0.00 34.97 2.24
6737 7042 0.541863 CCGTTGGAGATGCCCTAACT 59.458 55.000 0.00 0.00 34.97 2.24
6738 7043 0.463833 CCCGTTGGAGATGCCCTAAC 60.464 60.000 0.00 0.00 34.97 2.34
6739 7044 0.619255 TCCCGTTGGAGATGCCCTAA 60.619 55.000 0.00 0.00 35.03 2.69
6740 7045 1.002403 TCCCGTTGGAGATGCCCTA 59.998 57.895 0.00 0.00 35.03 3.53
6741 7046 2.285368 TCCCGTTGGAGATGCCCT 60.285 61.111 0.00 0.00 35.03 5.19
6749 7054 1.679680 CTATAAGCGTCTCCCGTTGGA 59.320 52.381 0.00 0.00 39.32 3.53
6750 7055 1.679680 TCTATAAGCGTCTCCCGTTGG 59.320 52.381 0.00 0.00 39.32 3.77
6751 7056 2.617308 TCTCTATAAGCGTCTCCCGTTG 59.383 50.000 0.00 0.00 39.32 4.10
6752 7057 2.928334 TCTCTATAAGCGTCTCCCGTT 58.072 47.619 0.00 0.00 39.32 4.44
6753 7058 2.634815 TCTCTATAAGCGTCTCCCGT 57.365 50.000 0.00 0.00 39.32 5.28
6754 7059 3.984508 TTTCTCTATAAGCGTCTCCCG 57.015 47.619 0.00 0.00 40.40 5.14
6781 7103 9.676899 CGCTTATGTATTCTCGAATTTAATAGC 57.323 33.333 0.00 2.70 32.50 2.97
6790 7112 4.503007 GTCAAGCGCTTATGTATTCTCGAA 59.497 41.667 24.55 0.00 0.00 3.71
6791 7113 4.042398 GTCAAGCGCTTATGTATTCTCGA 58.958 43.478 24.55 8.91 0.00 4.04
6792 7114 3.182572 GGTCAAGCGCTTATGTATTCTCG 59.817 47.826 24.55 6.39 0.00 4.04
6793 7115 4.372656 AGGTCAAGCGCTTATGTATTCTC 58.627 43.478 24.55 5.23 0.00 2.87
6794 7116 4.372656 GAGGTCAAGCGCTTATGTATTCT 58.627 43.478 24.55 12.87 0.00 2.40
6795 7117 3.495001 GGAGGTCAAGCGCTTATGTATTC 59.505 47.826 24.55 14.82 0.00 1.75
6797 7119 2.224305 GGGAGGTCAAGCGCTTATGTAT 60.224 50.000 24.55 8.07 0.00 2.29
6798 7120 1.138266 GGGAGGTCAAGCGCTTATGTA 59.862 52.381 24.55 5.93 0.00 2.29
6800 7122 0.107703 TGGGAGGTCAAGCGCTTATG 60.108 55.000 24.55 13.11 0.00 1.90
6801 7123 0.618458 TTGGGAGGTCAAGCGCTTAT 59.382 50.000 24.55 9.25 0.00 1.73
6803 7125 1.600916 GTTGGGAGGTCAAGCGCTT 60.601 57.895 18.98 18.98 0.00 4.68
6804 7126 2.032681 GTTGGGAGGTCAAGCGCT 59.967 61.111 2.64 2.64 0.00 5.92
6805 7127 3.423154 CGTTGGGAGGTCAAGCGC 61.423 66.667 0.00 0.00 0.00 5.92
6806 7128 3.423154 GCGTTGGGAGGTCAAGCG 61.423 66.667 0.00 0.00 0.00 4.68
6807 7129 3.056328 GGCGTTGGGAGGTCAAGC 61.056 66.667 0.00 0.00 0.00 4.01
6809 7131 2.429930 CTGGCGTTGGGAGGTCAA 59.570 61.111 0.00 0.00 0.00 3.18
6810 7132 3.636231 CCTGGCGTTGGGAGGTCA 61.636 66.667 0.00 0.00 0.00 4.02
6824 7146 4.760047 ACCGGCTGTTAGCGCCTG 62.760 66.667 2.29 6.60 45.37 4.85
6836 7158 0.249489 AGTGATCGATTAGCACCGGC 60.249 55.000 0.00 0.00 45.93 6.13
6837 7159 3.364889 TTAGTGATCGATTAGCACCGG 57.635 47.619 11.04 0.00 45.93 5.28
6838 7160 7.042992 TGTTTAATTAGTGATCGATTAGCACCG 60.043 37.037 11.04 0.00 45.93 4.94
6839 7161 8.138365 TGTTTAATTAGTGATCGATTAGCACC 57.862 34.615 11.04 0.00 45.93 5.01
6840 7162 7.794349 GCTGTTTAATTAGTGATCGATTAGCAC 59.206 37.037 0.00 3.27 45.09 4.40
6841 7163 7.306574 CGCTGTTTAATTAGTGATCGATTAGCA 60.307 37.037 0.00 0.00 0.00 3.49
6842 7164 7.004225 CGCTGTTTAATTAGTGATCGATTAGC 58.996 38.462 0.00 0.00 0.00 3.09
6843 7165 8.282124 TCGCTGTTTAATTAGTGATCGATTAG 57.718 34.615 0.00 0.00 0.00 1.73
6844 7166 8.537223 GTTCGCTGTTTAATTAGTGATCGATTA 58.463 33.333 0.00 0.00 33.86 1.75
6845 7167 7.399523 GTTCGCTGTTTAATTAGTGATCGATT 58.600 34.615 0.00 0.00 33.86 3.34
6846 7168 6.018994 GGTTCGCTGTTTAATTAGTGATCGAT 60.019 38.462 0.00 0.00 33.86 3.59
6847 7169 5.290158 GGTTCGCTGTTTAATTAGTGATCGA 59.710 40.000 0.00 0.00 33.86 3.59
6848 7170 5.490213 GGTTCGCTGTTTAATTAGTGATCG 58.510 41.667 4.26 0.00 33.86 3.69
6849 7171 5.353123 TGGGTTCGCTGTTTAATTAGTGATC 59.647 40.000 4.26 0.00 33.86 2.92
6850 7172 5.250200 TGGGTTCGCTGTTTAATTAGTGAT 58.750 37.500 4.26 0.00 33.86 3.06
6851 7173 4.643463 TGGGTTCGCTGTTTAATTAGTGA 58.357 39.130 0.00 0.00 0.00 3.41
6852 7174 5.354234 AGATGGGTTCGCTGTTTAATTAGTG 59.646 40.000 0.00 0.00 0.00 2.74
6853 7175 5.497474 AGATGGGTTCGCTGTTTAATTAGT 58.503 37.500 0.00 0.00 0.00 2.24
6854 7176 6.436843 AAGATGGGTTCGCTGTTTAATTAG 57.563 37.500 0.00 0.00 0.00 1.73
6855 7177 6.827586 AAAGATGGGTTCGCTGTTTAATTA 57.172 33.333 0.00 0.00 0.00 1.40
6856 7178 5.722021 AAAGATGGGTTCGCTGTTTAATT 57.278 34.783 0.00 0.00 0.00 1.40
6857 7179 5.722021 AAAAGATGGGTTCGCTGTTTAAT 57.278 34.783 0.00 0.00 0.00 1.40
6858 7180 5.334260 CGTAAAAGATGGGTTCGCTGTTTAA 60.334 40.000 0.00 0.00 0.00 1.52
6859 7181 4.152759 CGTAAAAGATGGGTTCGCTGTTTA 59.847 41.667 0.00 0.00 0.00 2.01
6860 7182 3.058501 CGTAAAAGATGGGTTCGCTGTTT 60.059 43.478 0.00 0.00 0.00 2.83
6861 7183 2.482721 CGTAAAAGATGGGTTCGCTGTT 59.517 45.455 0.00 0.00 0.00 3.16
6862 7184 2.073816 CGTAAAAGATGGGTTCGCTGT 58.926 47.619 0.00 0.00 0.00 4.40
6863 7185 2.343101 TCGTAAAAGATGGGTTCGCTG 58.657 47.619 0.00 0.00 0.00 5.18
6864 7186 2.618053 CTCGTAAAAGATGGGTTCGCT 58.382 47.619 0.00 0.00 0.00 4.93
6865 7187 1.664151 CCTCGTAAAAGATGGGTTCGC 59.336 52.381 0.00 0.00 0.00 4.70
6866 7188 2.093869 TCCCTCGTAAAAGATGGGTTCG 60.094 50.000 0.00 0.00 38.95 3.95
6867 7189 3.197116 TCTCCCTCGTAAAAGATGGGTTC 59.803 47.826 0.00 0.00 38.95 3.62
6868 7190 3.178865 TCTCCCTCGTAAAAGATGGGTT 58.821 45.455 0.00 0.00 38.95 4.11
6869 7191 2.829023 TCTCCCTCGTAAAAGATGGGT 58.171 47.619 0.00 0.00 38.95 4.51
6870 7192 3.906720 TTCTCCCTCGTAAAAGATGGG 57.093 47.619 0.00 0.00 39.22 4.00
6871 7193 4.636206 CCTTTTCTCCCTCGTAAAAGATGG 59.364 45.833 8.04 0.00 40.87 3.51
6872 7194 5.488341 TCCTTTTCTCCCTCGTAAAAGATG 58.512 41.667 8.04 0.00 40.87 2.90
6873 7195 5.757099 TCCTTTTCTCCCTCGTAAAAGAT 57.243 39.130 8.04 0.00 40.87 2.40
6874 7196 5.163280 TGTTCCTTTTCTCCCTCGTAAAAGA 60.163 40.000 8.04 0.00 40.87 2.52
6875 7197 5.061179 TGTTCCTTTTCTCCCTCGTAAAAG 58.939 41.667 0.00 0.00 39.05 2.27
6876 7198 5.038651 TGTTCCTTTTCTCCCTCGTAAAA 57.961 39.130 0.00 0.00 0.00 1.52
6877 7199 4.693042 TGTTCCTTTTCTCCCTCGTAAA 57.307 40.909 0.00 0.00 0.00 2.01
6878 7200 4.638304 CTTGTTCCTTTTCTCCCTCGTAA 58.362 43.478 0.00 0.00 0.00 3.18
6879 7201 3.556423 GCTTGTTCCTTTTCTCCCTCGTA 60.556 47.826 0.00 0.00 0.00 3.43
6880 7202 2.810767 GCTTGTTCCTTTTCTCCCTCGT 60.811 50.000 0.00 0.00 0.00 4.18
6881 7203 1.807142 GCTTGTTCCTTTTCTCCCTCG 59.193 52.381 0.00 0.00 0.00 4.63
6882 7204 1.807142 CGCTTGTTCCTTTTCTCCCTC 59.193 52.381 0.00 0.00 0.00 4.30
6883 7205 1.545651 CCGCTTGTTCCTTTTCTCCCT 60.546 52.381 0.00 0.00 0.00 4.20
6884 7206 0.881796 CCGCTTGTTCCTTTTCTCCC 59.118 55.000 0.00 0.00 0.00 4.30
6885 7207 0.241213 GCCGCTTGTTCCTTTTCTCC 59.759 55.000 0.00 0.00 0.00 3.71
6886 7208 0.241213 GGCCGCTTGTTCCTTTTCTC 59.759 55.000 0.00 0.00 0.00 2.87
6887 7209 1.515521 CGGCCGCTTGTTCCTTTTCT 61.516 55.000 14.67 0.00 0.00 2.52
6888 7210 1.081442 CGGCCGCTTGTTCCTTTTC 60.081 57.895 14.67 0.00 0.00 2.29
6889 7211 2.561037 CCGGCCGCTTGTTCCTTTT 61.561 57.895 22.85 0.00 0.00 2.27
6890 7212 2.983592 CCGGCCGCTTGTTCCTTT 60.984 61.111 22.85 0.00 0.00 3.11
6891 7213 4.265056 ACCGGCCGCTTGTTCCTT 62.265 61.111 22.85 0.00 0.00 3.36
6912 7234 1.154814 GCTACCTAGGCGCAAAGAGC 61.155 60.000 10.83 7.89 40.87 4.09
6913 7235 0.872021 CGCTACCTAGGCGCAAAGAG 60.872 60.000 20.01 0.00 45.83 2.85
6914 7236 1.141019 CGCTACCTAGGCGCAAAGA 59.859 57.895 20.01 0.00 45.83 2.52
6915 7237 3.706140 CGCTACCTAGGCGCAAAG 58.294 61.111 20.01 5.36 45.83 2.77
6930 7252 3.173390 GAATCATGGCAGCGGACGC 62.173 63.158 8.91 8.91 42.33 5.19
6931 7253 0.249447 TAGAATCATGGCAGCGGACG 60.249 55.000 0.00 0.00 0.00 4.79
6932 7254 1.506493 CTAGAATCATGGCAGCGGAC 58.494 55.000 0.00 0.00 0.00 4.79
6933 7255 0.250038 GCTAGAATCATGGCAGCGGA 60.250 55.000 0.00 0.00 0.00 5.54
6934 7256 2.242113 GCTAGAATCATGGCAGCGG 58.758 57.895 0.00 0.00 0.00 5.52
6936 7258 1.573436 GCGCTAGAATCATGGCAGC 59.427 57.895 0.00 0.00 0.00 5.25
6937 7259 1.233285 GGGCGCTAGAATCATGGCAG 61.233 60.000 7.64 0.00 0.00 4.85
6938 7260 1.227943 GGGCGCTAGAATCATGGCA 60.228 57.895 7.64 0.00 0.00 4.92
6939 7261 1.227943 TGGGCGCTAGAATCATGGC 60.228 57.895 7.64 0.00 0.00 4.40
6940 7262 1.233285 GCTGGGCGCTAGAATCATGG 61.233 60.000 7.64 0.00 35.14 3.66
6941 7263 2.242113 GCTGGGCGCTAGAATCATG 58.758 57.895 7.64 0.00 35.14 3.07
6942 7264 4.787871 GCTGGGCGCTAGAATCAT 57.212 55.556 7.64 0.00 35.14 2.45
6954 7276 4.980702 TGGCAGTTGGCAGCTGGG 62.981 66.667 28.83 8.74 46.12 4.45
6961 7283 0.878416 TACGTCAATTGGCAGTTGGC 59.122 50.000 20.65 18.56 43.74 4.52
6962 7284 3.848272 AATACGTCAATTGGCAGTTGG 57.152 42.857 20.65 9.62 0.00 3.77
6963 7285 5.879237 ACATAATACGTCAATTGGCAGTTG 58.121 37.500 15.80 15.80 0.00 3.16
6964 7286 6.509418 AACATAATACGTCAATTGGCAGTT 57.491 33.333 11.22 4.03 0.00 3.16
6965 7287 6.072175 ACAAACATAATACGTCAATTGGCAGT 60.072 34.615 11.22 11.23 0.00 4.40
6966 7288 6.321717 ACAAACATAATACGTCAATTGGCAG 58.678 36.000 11.22 5.64 0.00 4.85
6967 7289 6.260870 ACAAACATAATACGTCAATTGGCA 57.739 33.333 11.22 0.00 0.00 4.92
6968 7290 7.217447 GTGTACAAACATAATACGTCAATTGGC 59.783 37.037 5.42 1.91 38.08 4.52
6969 7291 7.694784 GGTGTACAAACATAATACGTCAATTGG 59.305 37.037 5.42 0.00 38.08 3.16
6970 7292 7.424167 CGGTGTACAAACATAATACGTCAATTG 59.576 37.037 0.00 0.00 38.08 2.32
6971 7293 7.118101 ACGGTGTACAAACATAATACGTCAATT 59.882 33.333 0.00 0.00 38.08 2.32
6972 7294 6.591062 ACGGTGTACAAACATAATACGTCAAT 59.409 34.615 0.00 0.00 38.08 2.57
6973 7295 5.925397 ACGGTGTACAAACATAATACGTCAA 59.075 36.000 0.00 0.00 38.08 3.18
6974 7296 5.468592 ACGGTGTACAAACATAATACGTCA 58.531 37.500 0.00 0.00 38.08 4.35
6975 7297 6.128849 ACAACGGTGTACAAACATAATACGTC 60.129 38.462 2.99 0.00 38.08 4.34
6976 7298 5.695816 ACAACGGTGTACAAACATAATACGT 59.304 36.000 2.99 0.00 38.08 3.57
6977 7299 6.010675 CACAACGGTGTACAAACATAATACG 58.989 40.000 5.39 0.00 40.24 3.06
7022 7347 5.532779 CACTTCCCATAAAATTAGAGGAGCC 59.467 44.000 0.00 0.00 0.00 4.70
7032 7357 6.350949 CCGGTTTGAATCACTTCCCATAAAAT 60.351 38.462 0.00 0.00 0.00 1.82
7039 7364 0.526211 GCCGGTTTGAATCACTTCCC 59.474 55.000 1.90 0.00 0.00 3.97
7072 7397 3.793144 CGAGGCAGCTGGCGAAAC 61.793 66.667 31.82 22.36 46.16 2.78
7109 7434 4.358841 CGGTCCATGGCCCCAACA 62.359 66.667 6.16 0.00 0.00 3.33
7112 7437 2.907482 ATAGACGGTCCATGGCCCCA 62.907 60.000 6.16 0.00 0.00 4.96
7116 7441 1.371558 GGGATAGACGGTCCATGGC 59.628 63.158 6.96 1.78 37.49 4.40
7119 7444 0.861155 AGAGGGGATAGACGGTCCAT 59.139 55.000 4.14 0.00 37.49 3.41
7122 7447 0.479378 AGGAGAGGGGATAGACGGTC 59.521 60.000 0.00 0.00 0.00 4.79
7129 7454 5.646215 GTGAAAGAGATAGGAGAGGGGATA 58.354 45.833 0.00 0.00 0.00 2.59
7159 7484 3.306818 GTCCGTAGAATGGAGCGAATAC 58.693 50.000 0.00 0.00 33.08 1.89
7163 7488 2.112898 GGTCCGTAGAATGGAGCGA 58.887 57.895 1.87 0.00 41.33 4.93
7175 7500 4.393778 AGGGGATGGACGGTCCGT 62.394 66.667 21.55 21.55 45.10 4.69
7176 7501 3.537874 GAGGGGATGGACGGTCCG 61.538 72.222 21.52 10.48 40.17 4.79
7177 7502 2.308118 TAGGAGGGGATGGACGGTCC 62.308 65.000 20.36 20.36 36.96 4.46
7178 7503 0.178929 ATAGGAGGGGATGGACGGTC 60.179 60.000 0.00 0.00 0.00 4.79
7179 7504 0.178929 GATAGGAGGGGATGGACGGT 60.179 60.000 0.00 0.00 0.00 4.83
7180 7505 0.115349 AGATAGGAGGGGATGGACGG 59.885 60.000 0.00 0.00 0.00 4.79
7181 7506 1.076350 AGAGATAGGAGGGGATGGACG 59.924 57.143 0.00 0.00 0.00 4.79
7182 7507 3.268034 AAGAGATAGGAGGGGATGGAC 57.732 52.381 0.00 0.00 0.00 4.02
7183 7508 3.209843 TGAAAGAGATAGGAGGGGATGGA 59.790 47.826 0.00 0.00 0.00 3.41
7184 7509 3.326297 GTGAAAGAGATAGGAGGGGATGG 59.674 52.174 0.00 0.00 0.00 3.51
7185 7510 3.006323 CGTGAAAGAGATAGGAGGGGATG 59.994 52.174 0.00 0.00 0.00 3.51
7186 7511 3.235200 CGTGAAAGAGATAGGAGGGGAT 58.765 50.000 0.00 0.00 0.00 3.85
7187 7512 2.667470 CGTGAAAGAGATAGGAGGGGA 58.333 52.381 0.00 0.00 0.00 4.81
7188 7513 1.069358 GCGTGAAAGAGATAGGAGGGG 59.931 57.143 0.00 0.00 0.00 4.79
7189 7514 1.757118 TGCGTGAAAGAGATAGGAGGG 59.243 52.381 0.00 0.00 0.00 4.30
7190 7515 2.166459 TGTGCGTGAAAGAGATAGGAGG 59.834 50.000 0.00 0.00 0.00 4.30
7191 7516 3.443037 CTGTGCGTGAAAGAGATAGGAG 58.557 50.000 0.00 0.00 0.00 3.69
7192 7517 2.166459 CCTGTGCGTGAAAGAGATAGGA 59.834 50.000 0.00 0.00 0.00 2.94
7193 7518 2.093973 ACCTGTGCGTGAAAGAGATAGG 60.094 50.000 0.00 0.00 0.00 2.57
7194 7519 3.238108 ACCTGTGCGTGAAAGAGATAG 57.762 47.619 0.00 0.00 0.00 2.08
7195 7520 4.202121 GGATACCTGTGCGTGAAAGAGATA 60.202 45.833 0.00 0.00 0.00 1.98
7196 7521 3.430929 GGATACCTGTGCGTGAAAGAGAT 60.431 47.826 0.00 0.00 0.00 2.75
7197 7522 2.094182 GGATACCTGTGCGTGAAAGAGA 60.094 50.000 0.00 0.00 0.00 3.10
7198 7523 2.271800 GGATACCTGTGCGTGAAAGAG 58.728 52.381 0.00 0.00 0.00 2.85
7199 7524 1.403647 CGGATACCTGTGCGTGAAAGA 60.404 52.381 0.00 0.00 0.00 2.52
7200 7525 0.999406 CGGATACCTGTGCGTGAAAG 59.001 55.000 0.00 0.00 0.00 2.62
7201 7526 1.017177 GCGGATACCTGTGCGTGAAA 61.017 55.000 0.00 0.00 35.24 2.69
7202 7527 1.447140 GCGGATACCTGTGCGTGAA 60.447 57.895 0.00 0.00 35.24 3.18
7203 7528 1.884075 AAGCGGATACCTGTGCGTGA 61.884 55.000 0.00 0.00 35.24 4.35
7204 7529 1.421410 GAAGCGGATACCTGTGCGTG 61.421 60.000 0.00 0.00 35.24 5.34
7205 7530 1.153628 GAAGCGGATACCTGTGCGT 60.154 57.895 0.00 0.00 35.24 5.24
7206 7531 0.530650 ATGAAGCGGATACCTGTGCG 60.531 55.000 0.00 0.00 35.93 5.34
7207 7532 1.668419 AATGAAGCGGATACCTGTGC 58.332 50.000 0.00 0.00 0.00 4.57
7208 7533 4.701956 AAAAATGAAGCGGATACCTGTG 57.298 40.909 0.00 0.00 0.00 3.66
7209 7534 7.122055 TGAAATAAAAATGAAGCGGATACCTGT 59.878 33.333 0.00 0.00 0.00 4.00
7210 7535 7.479980 TGAAATAAAAATGAAGCGGATACCTG 58.520 34.615 0.00 0.00 0.00 4.00
7211 7536 7.639113 TGAAATAAAAATGAAGCGGATACCT 57.361 32.000 0.00 0.00 0.00 3.08
7212 7537 7.096065 GCATGAAATAAAAATGAAGCGGATACC 60.096 37.037 0.00 0.00 0.00 2.73
7213 7538 7.357532 CGCATGAAATAAAAATGAAGCGGATAC 60.358 37.037 0.00 0.00 38.02 2.24
7214 7539 6.636447 CGCATGAAATAAAAATGAAGCGGATA 59.364 34.615 0.00 0.00 38.02 2.59
7215 7540 5.459762 CGCATGAAATAAAAATGAAGCGGAT 59.540 36.000 0.00 0.00 38.02 4.18
7216 7541 4.797868 CGCATGAAATAAAAATGAAGCGGA 59.202 37.500 0.00 0.00 38.02 5.54
7217 7542 4.548726 GCGCATGAAATAAAAATGAAGCGG 60.549 41.667 0.30 0.00 41.49 5.52
7218 7543 4.266029 AGCGCATGAAATAAAAATGAAGCG 59.734 37.500 11.47 0.00 43.72 4.68
7219 7544 5.289193 TGAGCGCATGAAATAAAAATGAAGC 59.711 36.000 11.47 0.00 0.00 3.86
7220 7545 6.020121 CCTGAGCGCATGAAATAAAAATGAAG 60.020 38.462 11.47 0.00 0.00 3.02
7221 7546 5.806502 CCTGAGCGCATGAAATAAAAATGAA 59.193 36.000 11.47 0.00 0.00 2.57
7222 7547 5.342433 CCTGAGCGCATGAAATAAAAATGA 58.658 37.500 11.47 0.00 0.00 2.57
7223 7548 4.026310 GCCTGAGCGCATGAAATAAAAATG 60.026 41.667 11.47 0.00 0.00 2.32
7224 7549 4.114794 GCCTGAGCGCATGAAATAAAAAT 58.885 39.130 11.47 0.00 0.00 1.82
7225 7550 3.193267 AGCCTGAGCGCATGAAATAAAAA 59.807 39.130 11.47 0.00 46.67 1.94
7226 7551 2.754552 AGCCTGAGCGCATGAAATAAAA 59.245 40.909 11.47 0.00 46.67 1.52
7227 7552 2.368439 AGCCTGAGCGCATGAAATAAA 58.632 42.857 11.47 0.00 46.67 1.40
7228 7553 2.042686 AGCCTGAGCGCATGAAATAA 57.957 45.000 11.47 0.00 46.67 1.40
7229 7554 1.942657 GAAGCCTGAGCGCATGAAATA 59.057 47.619 11.47 0.00 46.67 1.40
7230 7555 0.737219 GAAGCCTGAGCGCATGAAAT 59.263 50.000 11.47 0.00 46.67 2.17
7236 7561 0.742281 GAATGAGAAGCCTGAGCGCA 60.742 55.000 11.47 0.00 46.67 6.09
7238 7563 1.664659 CAAGAATGAGAAGCCTGAGCG 59.335 52.381 0.00 0.00 46.67 5.03
7256 7581 5.670792 ACAACGGGTCTTAGATATGACAA 57.329 39.130 7.83 0.00 35.11 3.18
7262 7587 3.382546 GTGGCTACAACGGGTCTTAGATA 59.617 47.826 0.00 0.00 0.00 1.98
7269 7594 0.672711 GGAAGTGGCTACAACGGGTC 60.673 60.000 2.02 0.00 0.00 4.46
7276 7601 1.338389 GGTTTAGCGGAAGTGGCTACA 60.338 52.381 2.02 0.00 42.32 2.74
7285 7610 0.390735 GCGGAAGAGGTTTAGCGGAA 60.391 55.000 0.00 0.00 0.00 4.30
7286 7611 1.217244 GCGGAAGAGGTTTAGCGGA 59.783 57.895 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.