Multiple sequence alignment - TraesCS1D01G118500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G118500 chr1D 100.000 2471 0 0 1 2471 114314793 114312323 0.000000e+00 4564
1 TraesCS1D01G118500 chr1D 83.791 401 46 13 1092 1484 114065154 114064765 1.810000e-96 363
2 TraesCS1D01G118500 chr1D 83.077 390 35 16 1089 1451 114083643 114083258 2.370000e-85 326
3 TraesCS1D01G118500 chr1D 84.066 182 16 5 1797 1972 114312946 114312772 1.970000e-36 163
4 TraesCS1D01G118500 chr1D 84.066 182 16 5 1848 2022 114312997 114312822 1.970000e-36 163
5 TraesCS1D01G118500 chr1A 88.142 1577 86 35 418 1956 124787972 124786459 0.000000e+00 1783
6 TraesCS1D01G118500 chr1A 88.170 634 24 13 1858 2469 124786598 124785994 0.000000e+00 708
7 TraesCS1D01G118500 chr1A 80.702 399 59 10 1092 1484 124181598 124181212 6.680000e-76 294
8 TraesCS1D01G118500 chr1A 80.825 412 38 20 1076 1451 124190179 124189773 4.020000e-73 285
9 TraesCS1D01G118500 chr1B 92.068 769 23 13 1071 1822 175275889 175275142 0.000000e+00 1048
10 TraesCS1D01G118500 chr1B 87.241 627 37 23 418 1039 175276549 175275961 0.000000e+00 675
11 TraesCS1D01G118500 chr1B 85.745 463 31 14 1831 2277 175274318 175273875 8.050000e-125 457
12 TraesCS1D01G118500 chr1B 83.590 390 46 10 1092 1475 174763499 174763122 1.410000e-92 350
13 TraesCS1D01G118500 chr1B 82.741 394 34 19 1089 1452 174784276 174783887 1.100000e-83 320
14 TraesCS1D01G118500 chrUn 96.420 419 13 1 1 419 101302538 101302954 0.000000e+00 689
15 TraesCS1D01G118500 chr5A 93.525 417 21 4 1 417 669579866 669580276 1.260000e-172 616
16 TraesCS1D01G118500 chr3D 82.883 222 25 11 1226 1439 86357777 86357993 1.170000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G118500 chr1D 114312323 114314793 2470 True 1630.000000 4564 89.377333 1 2471 3 chr1D.!!$R3 2470
1 TraesCS1D01G118500 chr1A 124785994 124787972 1978 True 1245.500000 1783 88.156000 418 2469 2 chr1A.!!$R3 2051
2 TraesCS1D01G118500 chr1B 175273875 175276549 2674 True 726.666667 1048 88.351333 418 2277 3 chr1B.!!$R3 1859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.108992 CAGCTGCCCGAACGTACTTA 60.109 55.0 0.0 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2012 2900 0.038343 TGGCGGAAAATCAGCAAAGC 60.038 50.0 4.95 0.0 39.36 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.179265 CGTCGTGCCATGGTCGTC 61.179 66.667 23.16 18.72 0.00 4.20
22 23 2.048597 GTCGTGCCATGGTCGTCA 60.049 61.111 23.16 8.23 0.00 4.35
23 24 2.048597 TCGTGCCATGGTCGTCAC 60.049 61.111 23.16 17.01 0.00 3.67
24 25 3.118454 CGTGCCATGGTCGTCACC 61.118 66.667 14.67 0.00 44.10 4.02
45 46 4.681978 GCGGGGAGCGAACACACT 62.682 66.667 0.00 0.00 35.41 3.55
46 47 2.738521 CGGGGAGCGAACACACTG 60.739 66.667 0.00 0.00 0.00 3.66
47 48 3.050275 GGGGAGCGAACACACTGC 61.050 66.667 0.00 0.00 0.00 4.40
48 49 3.050275 GGGAGCGAACACACTGCC 61.050 66.667 0.00 0.00 37.23 4.85
49 50 2.031163 GGAGCGAACACACTGCCT 59.969 61.111 0.00 0.00 0.00 4.75
50 51 1.598130 GGAGCGAACACACTGCCTT 60.598 57.895 0.00 0.00 0.00 4.35
51 52 1.166531 GGAGCGAACACACTGCCTTT 61.167 55.000 0.00 0.00 0.00 3.11
52 53 0.663153 GAGCGAACACACTGCCTTTT 59.337 50.000 0.00 0.00 0.00 2.27
53 54 1.065551 GAGCGAACACACTGCCTTTTT 59.934 47.619 0.00 0.00 0.00 1.94
70 71 3.495670 TTTTTGTGTGCCTGTGTGTAC 57.504 42.857 0.00 0.00 0.00 2.90
71 72 2.411628 TTTGTGTGCCTGTGTGTACT 57.588 45.000 0.00 0.00 0.00 2.73
72 73 2.411628 TTGTGTGCCTGTGTGTACTT 57.588 45.000 0.00 0.00 0.00 2.24
73 74 2.411628 TGTGTGCCTGTGTGTACTTT 57.588 45.000 0.00 0.00 0.00 2.66
74 75 2.013400 TGTGTGCCTGTGTGTACTTTG 58.987 47.619 0.00 0.00 0.00 2.77
75 76 2.014128 GTGTGCCTGTGTGTACTTTGT 58.986 47.619 0.00 0.00 0.00 2.83
76 77 2.013400 TGTGCCTGTGTGTACTTTGTG 58.987 47.619 0.00 0.00 0.00 3.33
77 78 1.333619 GTGCCTGTGTGTACTTTGTGG 59.666 52.381 0.00 0.00 0.00 4.17
78 79 1.210722 TGCCTGTGTGTACTTTGTGGA 59.789 47.619 0.00 0.00 0.00 4.02
79 80 2.158682 TGCCTGTGTGTACTTTGTGGAT 60.159 45.455 0.00 0.00 0.00 3.41
80 81 3.071747 TGCCTGTGTGTACTTTGTGGATA 59.928 43.478 0.00 0.00 0.00 2.59
81 82 4.069304 GCCTGTGTGTACTTTGTGGATAA 58.931 43.478 0.00 0.00 0.00 1.75
82 83 4.700213 GCCTGTGTGTACTTTGTGGATAAT 59.300 41.667 0.00 0.00 0.00 1.28
83 84 5.878116 GCCTGTGTGTACTTTGTGGATAATA 59.122 40.000 0.00 0.00 0.00 0.98
84 85 6.542370 GCCTGTGTGTACTTTGTGGATAATAT 59.458 38.462 0.00 0.00 0.00 1.28
85 86 7.713507 GCCTGTGTGTACTTTGTGGATAATATA 59.286 37.037 0.00 0.00 0.00 0.86
86 87 9.778741 CCTGTGTGTACTTTGTGGATAATATAT 57.221 33.333 0.00 0.00 0.00 0.86
88 89 9.554395 TGTGTGTACTTTGTGGATAATATATGG 57.446 33.333 0.00 0.00 0.00 2.74
89 90 9.555727 GTGTGTACTTTGTGGATAATATATGGT 57.444 33.333 0.00 0.00 0.00 3.55
90 91 9.772973 TGTGTACTTTGTGGATAATATATGGTC 57.227 33.333 0.00 0.00 0.00 4.02
91 92 9.998106 GTGTACTTTGTGGATAATATATGGTCT 57.002 33.333 0.00 0.00 0.00 3.85
133 134 7.639113 TGTTAATTCAACAAGACAACCTCTT 57.361 32.000 0.00 0.00 44.20 2.85
134 135 7.703328 TGTTAATTCAACAAGACAACCTCTTC 58.297 34.615 0.00 0.00 44.20 2.87
135 136 5.424121 AATTCAACAAGACAACCTCTTCG 57.576 39.130 0.00 0.00 37.08 3.79
136 137 3.536956 TCAACAAGACAACCTCTTCGT 57.463 42.857 0.00 0.00 37.08 3.85
137 138 4.659111 TCAACAAGACAACCTCTTCGTA 57.341 40.909 0.00 0.00 37.08 3.43
138 139 4.365723 TCAACAAGACAACCTCTTCGTAC 58.634 43.478 0.00 0.00 37.08 3.67
139 140 4.116961 CAACAAGACAACCTCTTCGTACA 58.883 43.478 0.00 0.00 37.08 2.90
140 141 3.978687 ACAAGACAACCTCTTCGTACAG 58.021 45.455 0.00 0.00 37.08 2.74
141 142 2.726832 AGACAACCTCTTCGTACAGC 57.273 50.000 0.00 0.00 0.00 4.40
142 143 2.240279 AGACAACCTCTTCGTACAGCT 58.760 47.619 0.00 0.00 0.00 4.24
143 144 2.029828 AGACAACCTCTTCGTACAGCTG 60.030 50.000 13.48 13.48 0.00 4.24
144 145 1.000955 ACAACCTCTTCGTACAGCTGG 59.999 52.381 19.93 0.00 0.00 4.85
145 146 1.000955 CAACCTCTTCGTACAGCTGGT 59.999 52.381 19.93 6.35 0.00 4.00
146 147 1.339097 ACCTCTTCGTACAGCTGGTT 58.661 50.000 19.93 0.00 0.00 3.67
147 148 2.522185 ACCTCTTCGTACAGCTGGTTA 58.478 47.619 19.93 0.00 0.00 2.85
148 149 2.230750 ACCTCTTCGTACAGCTGGTTAC 59.769 50.000 19.93 11.36 0.00 2.50
149 150 2.416972 CCTCTTCGTACAGCTGGTTACC 60.417 54.545 19.93 0.00 0.00 2.85
150 151 2.230508 CTCTTCGTACAGCTGGTTACCA 59.769 50.000 19.93 3.29 0.00 3.25
158 159 2.436646 CTGGTTACCAGCTGCCCG 60.437 66.667 19.16 0.00 45.13 6.13
159 160 2.925706 TGGTTACCAGCTGCCCGA 60.926 61.111 8.66 0.00 0.00 5.14
160 161 2.349755 GGTTACCAGCTGCCCGAA 59.650 61.111 8.66 0.00 0.00 4.30
161 162 2.038837 GGTTACCAGCTGCCCGAAC 61.039 63.158 8.66 8.75 0.00 3.95
162 163 2.047655 TTACCAGCTGCCCGAACG 60.048 61.111 8.66 0.00 0.00 3.95
163 164 2.874664 TTACCAGCTGCCCGAACGT 61.875 57.895 8.66 1.06 0.00 3.99
164 165 1.534336 TTACCAGCTGCCCGAACGTA 61.534 55.000 8.66 0.00 0.00 3.57
165 166 2.216750 TACCAGCTGCCCGAACGTAC 62.217 60.000 8.66 0.00 0.00 3.67
166 167 2.261671 CAGCTGCCCGAACGTACT 59.738 61.111 0.00 0.00 0.00 2.73
167 168 1.374252 CAGCTGCCCGAACGTACTT 60.374 57.895 0.00 0.00 0.00 2.24
168 169 0.108992 CAGCTGCCCGAACGTACTTA 60.109 55.000 0.00 0.00 0.00 2.24
169 170 0.172803 AGCTGCCCGAACGTACTTAG 59.827 55.000 0.00 0.00 0.00 2.18
170 171 0.171903 GCTGCCCGAACGTACTTAGA 59.828 55.000 0.00 0.00 0.00 2.10
171 172 1.202382 GCTGCCCGAACGTACTTAGAT 60.202 52.381 0.00 0.00 0.00 1.98
172 173 2.460918 CTGCCCGAACGTACTTAGATG 58.539 52.381 0.00 0.00 0.00 2.90
173 174 1.820519 TGCCCGAACGTACTTAGATGT 59.179 47.619 0.00 0.00 0.00 3.06
174 175 2.159338 TGCCCGAACGTACTTAGATGTC 60.159 50.000 0.00 0.00 0.00 3.06
175 176 2.098770 GCCCGAACGTACTTAGATGTCT 59.901 50.000 0.00 0.00 0.00 3.41
176 177 3.692576 CCCGAACGTACTTAGATGTCTG 58.307 50.000 0.00 0.00 0.00 3.51
177 178 3.128242 CCCGAACGTACTTAGATGTCTGT 59.872 47.826 0.00 0.00 0.00 3.41
178 179 4.096311 CCGAACGTACTTAGATGTCTGTG 58.904 47.826 0.00 0.00 0.00 3.66
179 180 4.379186 CCGAACGTACTTAGATGTCTGTGT 60.379 45.833 0.00 0.00 0.00 3.72
180 181 5.152097 CGAACGTACTTAGATGTCTGTGTT 58.848 41.667 0.00 0.00 0.00 3.32
181 182 5.059343 CGAACGTACTTAGATGTCTGTGTTG 59.941 44.000 0.00 0.00 0.00 3.33
182 183 5.449107 ACGTACTTAGATGTCTGTGTTGT 57.551 39.130 0.00 0.00 0.00 3.32
183 184 5.220381 ACGTACTTAGATGTCTGTGTTGTG 58.780 41.667 0.00 0.00 0.00 3.33
184 185 5.220381 CGTACTTAGATGTCTGTGTTGTGT 58.780 41.667 0.00 0.00 0.00 3.72
185 186 5.342525 CGTACTTAGATGTCTGTGTTGTGTC 59.657 44.000 0.00 0.00 0.00 3.67
186 187 5.276461 ACTTAGATGTCTGTGTTGTGTCA 57.724 39.130 0.00 0.00 0.00 3.58
187 188 5.050490 ACTTAGATGTCTGTGTTGTGTCAC 58.950 41.667 0.00 0.00 38.63 3.67
188 189 3.827008 AGATGTCTGTGTTGTGTCACT 57.173 42.857 4.27 0.00 38.90 3.41
189 190 3.461061 AGATGTCTGTGTTGTGTCACTG 58.539 45.455 4.27 0.00 38.90 3.66
190 191 2.760634 TGTCTGTGTTGTGTCACTGT 57.239 45.000 4.27 0.00 38.90 3.55
191 192 2.345876 TGTCTGTGTTGTGTCACTGTG 58.654 47.619 4.27 0.17 38.90 3.66
192 193 1.062587 GTCTGTGTTGTGTCACTGTGC 59.937 52.381 2.12 0.00 38.90 4.57
193 194 1.066215 TCTGTGTTGTGTCACTGTGCT 60.066 47.619 2.12 0.00 38.90 4.40
194 195 2.167487 TCTGTGTTGTGTCACTGTGCTA 59.833 45.455 2.12 0.00 38.90 3.49
195 196 3.133691 CTGTGTTGTGTCACTGTGCTAT 58.866 45.455 2.12 0.00 38.90 2.97
196 197 3.540617 TGTGTTGTGTCACTGTGCTATT 58.459 40.909 2.12 0.00 38.90 1.73
197 198 3.944650 TGTGTTGTGTCACTGTGCTATTT 59.055 39.130 2.12 0.00 38.90 1.40
198 199 4.035091 TGTGTTGTGTCACTGTGCTATTTC 59.965 41.667 2.12 0.00 38.90 2.17
199 200 4.273480 GTGTTGTGTCACTGTGCTATTTCT 59.727 41.667 2.12 0.00 35.68 2.52
200 201 4.881273 TGTTGTGTCACTGTGCTATTTCTT 59.119 37.500 2.12 0.00 0.00 2.52
201 202 5.356751 TGTTGTGTCACTGTGCTATTTCTTT 59.643 36.000 2.12 0.00 0.00 2.52
202 203 5.673337 TGTGTCACTGTGCTATTTCTTTC 57.327 39.130 2.12 0.00 0.00 2.62
203 204 5.368145 TGTGTCACTGTGCTATTTCTTTCT 58.632 37.500 2.12 0.00 0.00 2.52
204 205 5.466728 TGTGTCACTGTGCTATTTCTTTCTC 59.533 40.000 2.12 0.00 0.00 2.87
205 206 5.698545 GTGTCACTGTGCTATTTCTTTCTCT 59.301 40.000 2.12 0.00 0.00 3.10
206 207 5.928839 TGTCACTGTGCTATTTCTTTCTCTC 59.071 40.000 2.12 0.00 0.00 3.20
207 208 5.928839 GTCACTGTGCTATTTCTTTCTCTCA 59.071 40.000 2.12 0.00 0.00 3.27
208 209 5.928839 TCACTGTGCTATTTCTTTCTCTCAC 59.071 40.000 2.12 0.00 0.00 3.51
209 210 5.121454 CACTGTGCTATTTCTTTCTCTCACC 59.879 44.000 0.00 0.00 0.00 4.02
210 211 4.245660 TGTGCTATTTCTTTCTCTCACCG 58.754 43.478 0.00 0.00 0.00 4.94
211 212 3.062774 GTGCTATTTCTTTCTCTCACCGC 59.937 47.826 0.00 0.00 0.00 5.68
212 213 2.609916 GCTATTTCTTTCTCTCACCGCC 59.390 50.000 0.00 0.00 0.00 6.13
213 214 2.859165 ATTTCTTTCTCTCACCGCCA 57.141 45.000 0.00 0.00 0.00 5.69
214 215 2.631160 TTTCTTTCTCTCACCGCCAA 57.369 45.000 0.00 0.00 0.00 4.52
215 216 2.169832 TTCTTTCTCTCACCGCCAAG 57.830 50.000 0.00 0.00 0.00 3.61
216 217 1.048601 TCTTTCTCTCACCGCCAAGT 58.951 50.000 0.00 0.00 0.00 3.16
217 218 1.151668 CTTTCTCTCACCGCCAAGTG 58.848 55.000 0.00 0.00 39.20 3.16
218 219 0.250295 TTTCTCTCACCGCCAAGTGG 60.250 55.000 0.00 0.00 38.34 4.00
219 220 2.046892 CTCTCACCGCCAAGTGGG 60.047 66.667 0.00 0.00 39.77 4.61
234 235 3.529948 TGGGCTCCACACAAAATGT 57.470 47.368 0.00 0.00 44.81 2.71
235 236 1.327303 TGGGCTCCACACAAAATGTC 58.673 50.000 0.00 0.00 40.64 3.06
236 237 1.133513 TGGGCTCCACACAAAATGTCT 60.134 47.619 0.00 0.00 40.64 3.41
237 238 1.963515 GGGCTCCACACAAAATGTCTT 59.036 47.619 0.00 0.00 40.64 3.01
238 239 2.288395 GGGCTCCACACAAAATGTCTTG 60.288 50.000 0.00 0.00 40.64 3.02
239 240 2.397549 GCTCCACACAAAATGTCTTGC 58.602 47.619 0.00 0.00 40.64 4.01
240 241 2.863704 GCTCCACACAAAATGTCTTGCC 60.864 50.000 0.00 0.00 40.64 4.52
241 242 2.624838 CTCCACACAAAATGTCTTGCCT 59.375 45.455 0.00 0.00 40.64 4.75
242 243 3.820467 CTCCACACAAAATGTCTTGCCTA 59.180 43.478 0.00 0.00 40.64 3.93
243 244 3.568007 TCCACACAAAATGTCTTGCCTAC 59.432 43.478 0.00 0.00 40.64 3.18
244 245 3.305335 CCACACAAAATGTCTTGCCTACC 60.305 47.826 0.00 0.00 40.64 3.18
245 246 3.569701 CACACAAAATGTCTTGCCTACCT 59.430 43.478 0.00 0.00 40.64 3.08
246 247 3.821033 ACACAAAATGTCTTGCCTACCTC 59.179 43.478 0.00 0.00 36.54 3.85
247 248 3.820467 CACAAAATGTCTTGCCTACCTCA 59.180 43.478 0.00 0.00 0.00 3.86
248 249 4.460382 CACAAAATGTCTTGCCTACCTCAT 59.540 41.667 0.00 0.00 0.00 2.90
249 250 4.702131 ACAAAATGTCTTGCCTACCTCATC 59.298 41.667 0.00 0.00 0.00 2.92
250 251 3.567478 AATGTCTTGCCTACCTCATCC 57.433 47.619 0.00 0.00 0.00 3.51
251 252 1.951209 TGTCTTGCCTACCTCATCCA 58.049 50.000 0.00 0.00 0.00 3.41
252 253 2.481441 TGTCTTGCCTACCTCATCCAT 58.519 47.619 0.00 0.00 0.00 3.41
253 254 2.435805 TGTCTTGCCTACCTCATCCATC 59.564 50.000 0.00 0.00 0.00 3.51
254 255 2.050144 TCTTGCCTACCTCATCCATCC 58.950 52.381 0.00 0.00 0.00 3.51
255 256 1.072965 CTTGCCTACCTCATCCATCCC 59.927 57.143 0.00 0.00 0.00 3.85
256 257 1.121407 TGCCTACCTCATCCATCCCG 61.121 60.000 0.00 0.00 0.00 5.14
257 258 1.831652 GCCTACCTCATCCATCCCGG 61.832 65.000 0.00 0.00 0.00 5.73
258 259 1.194781 CCTACCTCATCCATCCCGGG 61.195 65.000 16.85 16.85 34.36 5.73
259 260 1.831652 CTACCTCATCCATCCCGGGC 61.832 65.000 18.49 0.00 34.36 6.13
260 261 2.326529 TACCTCATCCATCCCGGGCT 62.327 60.000 18.49 1.75 34.36 5.19
261 262 2.455565 CCTCATCCATCCCGGGCTT 61.456 63.158 18.49 1.87 34.36 4.35
262 263 1.533711 CTCATCCATCCCGGGCTTT 59.466 57.895 18.49 0.00 34.36 3.51
263 264 0.536006 CTCATCCATCCCGGGCTTTC 60.536 60.000 18.49 0.00 34.36 2.62
264 265 1.529244 CATCCATCCCGGGCTTTCC 60.529 63.158 18.49 0.00 34.36 3.13
273 274 2.355115 GGGCTTTCCCGGTGTCAT 59.645 61.111 0.00 0.00 43.94 3.06
274 275 2.046285 GGGCTTTCCCGGTGTCATG 61.046 63.158 0.00 0.00 43.94 3.07
275 276 1.303317 GGCTTTCCCGGTGTCATGT 60.303 57.895 0.00 0.00 0.00 3.21
276 277 0.893727 GGCTTTCCCGGTGTCATGTT 60.894 55.000 0.00 0.00 0.00 2.71
277 278 0.240945 GCTTTCCCGGTGTCATGTTG 59.759 55.000 0.00 0.00 0.00 3.33
278 279 1.890876 CTTTCCCGGTGTCATGTTGA 58.109 50.000 0.00 0.00 0.00 3.18
279 280 2.226330 CTTTCCCGGTGTCATGTTGAA 58.774 47.619 0.00 0.00 0.00 2.69
280 281 2.350057 TTCCCGGTGTCATGTTGAAA 57.650 45.000 0.00 0.00 0.00 2.69
281 282 2.577606 TCCCGGTGTCATGTTGAAAT 57.422 45.000 0.00 0.00 0.00 2.17
282 283 2.870175 TCCCGGTGTCATGTTGAAATT 58.130 42.857 0.00 0.00 0.00 1.82
283 284 3.226777 TCCCGGTGTCATGTTGAAATTT 58.773 40.909 0.00 0.00 0.00 1.82
284 285 3.254657 TCCCGGTGTCATGTTGAAATTTC 59.745 43.478 11.41 11.41 0.00 2.17
285 286 3.574614 CCGGTGTCATGTTGAAATTTCC 58.425 45.455 15.48 1.80 0.00 3.13
286 287 3.255642 CCGGTGTCATGTTGAAATTTCCT 59.744 43.478 15.48 0.00 0.00 3.36
287 288 4.229096 CGGTGTCATGTTGAAATTTCCTG 58.771 43.478 15.48 7.98 0.00 3.86
288 289 3.989817 GGTGTCATGTTGAAATTTCCTGC 59.010 43.478 15.48 6.31 0.00 4.85
289 290 4.262164 GGTGTCATGTTGAAATTTCCTGCT 60.262 41.667 15.48 0.00 0.00 4.24
290 291 5.291971 GTGTCATGTTGAAATTTCCTGCTT 58.708 37.500 15.48 1.90 0.00 3.91
291 292 5.176223 GTGTCATGTTGAAATTTCCTGCTTG 59.824 40.000 15.48 12.41 0.00 4.01
292 293 4.687483 GTCATGTTGAAATTTCCTGCTTGG 59.313 41.667 15.48 0.27 37.10 3.61
293 294 4.588106 TCATGTTGAAATTTCCTGCTTGGA 59.412 37.500 15.48 2.51 44.51 3.53
294 295 5.246656 TCATGTTGAAATTTCCTGCTTGGAT 59.753 36.000 15.48 0.00 45.68 3.41
295 296 6.436847 TCATGTTGAAATTTCCTGCTTGGATA 59.563 34.615 15.48 0.00 45.68 2.59
296 297 6.024552 TGTTGAAATTTCCTGCTTGGATAC 57.975 37.500 15.48 0.20 45.68 2.24
313 314 6.817765 TGGATACAGCTTCAAGGTTTAAAG 57.182 37.500 0.00 0.00 46.17 1.85
314 315 5.183140 TGGATACAGCTTCAAGGTTTAAAGC 59.817 40.000 9.39 9.39 46.17 3.51
318 319 2.929960 GCTTCAAGGTTTAAAGCGACC 58.070 47.619 11.50 0.00 36.41 4.79
319 320 2.664698 GCTTCAAGGTTTAAAGCGACCG 60.665 50.000 11.50 2.60 40.89 4.79
320 321 1.515081 TCAAGGTTTAAAGCGACCGG 58.485 50.000 11.50 0.00 40.89 5.28
321 322 0.519961 CAAGGTTTAAAGCGACCGGG 59.480 55.000 6.32 0.00 40.89 5.73
322 323 0.397564 AAGGTTTAAAGCGACCGGGA 59.602 50.000 6.32 0.00 40.89 5.14
323 324 0.616891 AGGTTTAAAGCGACCGGGAT 59.383 50.000 6.32 0.00 40.89 3.85
324 325 1.003928 AGGTTTAAAGCGACCGGGATT 59.996 47.619 6.32 0.00 40.89 3.01
325 326 2.236893 AGGTTTAAAGCGACCGGGATTA 59.763 45.455 6.32 0.00 40.89 1.75
326 327 2.352651 GGTTTAAAGCGACCGGGATTAC 59.647 50.000 6.32 0.00 0.00 1.89
327 328 3.002102 GTTTAAAGCGACCGGGATTACA 58.998 45.455 6.32 0.00 0.00 2.41
328 329 3.331478 TTAAAGCGACCGGGATTACAA 57.669 42.857 6.32 0.00 0.00 2.41
329 330 2.188062 AAAGCGACCGGGATTACAAA 57.812 45.000 6.32 0.00 0.00 2.83
330 331 2.188062 AAGCGACCGGGATTACAAAA 57.812 45.000 6.32 0.00 0.00 2.44
331 332 1.734163 AGCGACCGGGATTACAAAAG 58.266 50.000 6.32 0.00 0.00 2.27
332 333 1.276989 AGCGACCGGGATTACAAAAGA 59.723 47.619 6.32 0.00 0.00 2.52
333 334 1.395954 GCGACCGGGATTACAAAAGAC 59.604 52.381 6.32 0.00 0.00 3.01
334 335 1.657094 CGACCGGGATTACAAAAGACG 59.343 52.381 6.32 0.00 0.00 4.18
335 336 2.004733 GACCGGGATTACAAAAGACGG 58.995 52.381 6.32 0.00 44.86 4.79
336 337 1.339342 ACCGGGATTACAAAAGACGGG 60.339 52.381 6.32 0.00 43.73 5.28
337 338 1.375551 CGGGATTACAAAAGACGGGG 58.624 55.000 0.00 0.00 0.00 5.73
338 339 1.339342 CGGGATTACAAAAGACGGGGT 60.339 52.381 0.00 0.00 0.00 4.95
339 340 2.093553 CGGGATTACAAAAGACGGGGTA 60.094 50.000 0.00 0.00 0.00 3.69
340 341 3.432608 CGGGATTACAAAAGACGGGGTAT 60.433 47.826 0.00 0.00 0.00 2.73
341 342 4.202243 CGGGATTACAAAAGACGGGGTATA 60.202 45.833 0.00 0.00 0.00 1.47
342 343 5.303165 GGGATTACAAAAGACGGGGTATAG 58.697 45.833 0.00 0.00 0.00 1.31
343 344 5.070847 GGGATTACAAAAGACGGGGTATAGA 59.929 44.000 0.00 0.00 0.00 1.98
344 345 5.987953 GGATTACAAAAGACGGGGTATAGAC 59.012 44.000 0.00 0.00 0.00 2.59
345 346 6.183360 GGATTACAAAAGACGGGGTATAGACT 60.183 42.308 0.00 0.00 0.00 3.24
346 347 6.610075 TTACAAAAGACGGGGTATAGACTT 57.390 37.500 0.00 0.00 0.00 3.01
347 348 5.082251 ACAAAAGACGGGGTATAGACTTC 57.918 43.478 0.00 0.00 0.00 3.01
348 349 4.529377 ACAAAAGACGGGGTATAGACTTCA 59.471 41.667 0.00 0.00 0.00 3.02
349 350 5.109903 CAAAAGACGGGGTATAGACTTCAG 58.890 45.833 0.00 0.00 0.00 3.02
350 351 2.946785 AGACGGGGTATAGACTTCAGG 58.053 52.381 0.00 0.00 0.00 3.86
351 352 1.962100 GACGGGGTATAGACTTCAGGG 59.038 57.143 0.00 0.00 0.00 4.45
352 353 1.572415 ACGGGGTATAGACTTCAGGGA 59.428 52.381 0.00 0.00 0.00 4.20
353 354 2.179424 ACGGGGTATAGACTTCAGGGAT 59.821 50.000 0.00 0.00 0.00 3.85
354 355 3.240302 CGGGGTATAGACTTCAGGGATT 58.760 50.000 0.00 0.00 0.00 3.01
355 356 3.646637 CGGGGTATAGACTTCAGGGATTT 59.353 47.826 0.00 0.00 0.00 2.17
356 357 4.836736 CGGGGTATAGACTTCAGGGATTTA 59.163 45.833 0.00 0.00 0.00 1.40
357 358 5.306160 CGGGGTATAGACTTCAGGGATTTAA 59.694 44.000 0.00 0.00 0.00 1.52
358 359 6.013639 CGGGGTATAGACTTCAGGGATTTAAT 60.014 42.308 0.00 0.00 0.00 1.40
359 360 7.168905 GGGGTATAGACTTCAGGGATTTAATG 58.831 42.308 0.00 0.00 0.00 1.90
360 361 7.017254 GGGGTATAGACTTCAGGGATTTAATGA 59.983 40.741 0.00 0.00 0.00 2.57
361 362 8.606830 GGGTATAGACTTCAGGGATTTAATGAT 58.393 37.037 0.00 0.00 0.00 2.45
362 363 9.442047 GGTATAGACTTCAGGGATTTAATGATG 57.558 37.037 0.00 0.00 0.00 3.07
363 364 9.442047 GTATAGACTTCAGGGATTTAATGATGG 57.558 37.037 0.00 0.00 0.00 3.51
364 365 6.581388 AGACTTCAGGGATTTAATGATGGA 57.419 37.500 0.00 0.00 0.00 3.41
365 366 6.599445 AGACTTCAGGGATTTAATGATGGAG 58.401 40.000 0.00 0.00 0.00 3.86
366 367 5.699143 ACTTCAGGGATTTAATGATGGAGG 58.301 41.667 0.00 0.00 0.00 4.30
367 368 5.194537 ACTTCAGGGATTTAATGATGGAGGT 59.805 40.000 0.00 0.00 0.00 3.85
368 369 5.732331 TCAGGGATTTAATGATGGAGGTT 57.268 39.130 0.00 0.00 0.00 3.50
369 370 5.694995 TCAGGGATTTAATGATGGAGGTTC 58.305 41.667 0.00 0.00 0.00 3.62
370 371 5.193527 TCAGGGATTTAATGATGGAGGTTCA 59.806 40.000 0.00 0.00 0.00 3.18
371 372 6.073314 CAGGGATTTAATGATGGAGGTTCAT 58.927 40.000 0.00 0.00 35.35 2.57
372 373 6.552350 CAGGGATTTAATGATGGAGGTTCATT 59.448 38.462 4.53 4.53 44.05 2.57
373 374 7.070322 CAGGGATTTAATGATGGAGGTTCATTT 59.930 37.037 4.43 0.00 40.08 2.32
374 375 7.624879 AGGGATTTAATGATGGAGGTTCATTTT 59.375 33.333 4.43 0.00 40.08 1.82
375 376 8.923270 GGGATTTAATGATGGAGGTTCATTTTA 58.077 33.333 4.43 0.00 40.08 1.52
376 377 9.971922 GGATTTAATGATGGAGGTTCATTTTAG 57.028 33.333 4.43 0.00 40.08 1.85
379 380 8.752005 TTAATGATGGAGGTTCATTTTAGAGG 57.248 34.615 4.43 0.00 40.08 3.69
380 381 6.581388 ATGATGGAGGTTCATTTTAGAGGA 57.419 37.500 0.00 0.00 29.55 3.71
381 382 5.994250 TGATGGAGGTTCATTTTAGAGGAG 58.006 41.667 0.00 0.00 0.00 3.69
382 383 4.222124 TGGAGGTTCATTTTAGAGGAGC 57.778 45.455 0.00 0.00 0.00 4.70
383 384 3.846588 TGGAGGTTCATTTTAGAGGAGCT 59.153 43.478 0.00 0.00 0.00 4.09
384 385 4.289672 TGGAGGTTCATTTTAGAGGAGCTT 59.710 41.667 0.00 0.00 0.00 3.74
385 386 5.222130 TGGAGGTTCATTTTAGAGGAGCTTT 60.222 40.000 0.00 0.00 0.00 3.51
386 387 6.012858 TGGAGGTTCATTTTAGAGGAGCTTTA 60.013 38.462 0.00 0.00 0.00 1.85
387 388 6.316640 GGAGGTTCATTTTAGAGGAGCTTTAC 59.683 42.308 0.00 0.00 0.00 2.01
388 389 6.181190 AGGTTCATTTTAGAGGAGCTTTACC 58.819 40.000 0.00 0.00 0.00 2.85
389 390 5.944007 GGTTCATTTTAGAGGAGCTTTACCA 59.056 40.000 0.00 0.00 0.00 3.25
390 391 6.127980 GGTTCATTTTAGAGGAGCTTTACCAC 60.128 42.308 0.00 0.00 0.00 4.16
391 392 5.175859 TCATTTTAGAGGAGCTTTACCACG 58.824 41.667 0.00 0.00 0.00 4.94
392 393 4.612264 TTTTAGAGGAGCTTTACCACGT 57.388 40.909 0.00 0.00 0.00 4.49
393 394 3.863142 TTAGAGGAGCTTTACCACGTC 57.137 47.619 0.00 0.00 0.00 4.34
394 395 1.629043 AGAGGAGCTTTACCACGTCA 58.371 50.000 0.00 0.00 0.00 4.35
395 396 1.968493 AGAGGAGCTTTACCACGTCAA 59.032 47.619 0.00 0.00 0.00 3.18
396 397 2.028930 AGAGGAGCTTTACCACGTCAAG 60.029 50.000 0.00 0.00 0.00 3.02
397 398 1.002087 AGGAGCTTTACCACGTCAAGG 59.998 52.381 0.00 0.00 0.00 3.61
398 399 1.270678 GGAGCTTTACCACGTCAAGGT 60.271 52.381 1.30 1.30 43.14 3.50
399 400 2.490991 GAGCTTTACCACGTCAAGGTT 58.509 47.619 0.88 0.00 40.54 3.50
400 401 2.876550 GAGCTTTACCACGTCAAGGTTT 59.123 45.455 0.88 0.00 40.54 3.27
401 402 4.060205 GAGCTTTACCACGTCAAGGTTTA 58.940 43.478 0.88 0.00 40.54 2.01
402 403 4.453751 AGCTTTACCACGTCAAGGTTTAA 58.546 39.130 0.88 0.00 40.54 1.52
403 404 4.883006 AGCTTTACCACGTCAAGGTTTAAA 59.117 37.500 0.88 0.00 40.54 1.52
404 405 5.533528 AGCTTTACCACGTCAAGGTTTAAAT 59.466 36.000 0.88 0.00 40.54 1.40
405 406 5.854866 GCTTTACCACGTCAAGGTTTAAATC 59.145 40.000 0.88 0.00 40.54 2.17
406 407 6.513720 GCTTTACCACGTCAAGGTTTAAATCA 60.514 38.462 0.88 0.00 40.54 2.57
407 408 6.939132 TTACCACGTCAAGGTTTAAATCAA 57.061 33.333 0.88 0.00 40.54 2.57
408 409 5.838531 ACCACGTCAAGGTTTAAATCAAA 57.161 34.783 0.43 0.00 35.33 2.69
409 410 5.584442 ACCACGTCAAGGTTTAAATCAAAC 58.416 37.500 0.43 0.00 44.94 2.93
410 411 5.358725 ACCACGTCAAGGTTTAAATCAAACT 59.641 36.000 0.43 0.00 45.01 2.66
411 412 6.127563 ACCACGTCAAGGTTTAAATCAAACTT 60.128 34.615 0.43 0.00 45.01 2.66
412 413 6.416750 CCACGTCAAGGTTTAAATCAAACTTC 59.583 38.462 0.43 0.00 45.01 3.01
413 414 6.970043 CACGTCAAGGTTTAAATCAAACTTCA 59.030 34.615 0.43 0.00 45.01 3.02
414 415 6.970613 ACGTCAAGGTTTAAATCAAACTTCAC 59.029 34.615 0.43 0.00 45.01 3.18
415 416 7.148137 ACGTCAAGGTTTAAATCAAACTTCACT 60.148 33.333 0.43 0.00 45.01 3.41
416 417 7.376072 CGTCAAGGTTTAAATCAAACTTCACTC 59.624 37.037 0.43 0.00 45.01 3.51
430 432 4.056050 ACTTCACTCGTTGTGGTGTAATC 58.944 43.478 10.35 0.00 46.20 1.75
454 456 7.050377 TCTAAATCTAGGCTTGGAGTGAAATG 58.950 38.462 0.00 0.00 0.00 2.32
512 514 4.799949 CGTCCGTCCATCGTTAGAAAATTA 59.200 41.667 0.00 0.00 37.94 1.40
593 595 1.742768 CTACCGGGTGCATCTCTCC 59.257 63.158 10.66 0.00 0.00 3.71
628 630 9.656040 AACACGGATTATGTTTGTTACTGTATA 57.344 29.630 0.00 0.00 36.93 1.47
681 683 2.171448 ACAAAGATCCGAGATCCCCTTG 59.829 50.000 9.44 11.79 0.00 3.61
861 872 2.029073 ACGCAACGGTCACTCAGG 59.971 61.111 0.00 0.00 0.00 3.86
862 873 2.338620 CGCAACGGTCACTCAGGA 59.661 61.111 0.00 0.00 0.00 3.86
863 874 1.734477 CGCAACGGTCACTCAGGAG 60.734 63.158 0.00 0.00 0.00 3.69
865 876 1.816863 GCAACGGTCACTCAGGAGGA 61.817 60.000 0.83 0.00 0.00 3.71
944 957 1.062044 GTCCTTATCCACTCCTCCCCT 60.062 57.143 0.00 0.00 0.00 4.79
945 958 1.657162 TCCTTATCCACTCCTCCCCTT 59.343 52.381 0.00 0.00 0.00 3.95
975 988 3.007182 CCGCTCCTCCCCGTTATAAATTA 59.993 47.826 0.00 0.00 0.00 1.40
995 1008 4.704833 CACCACCCCGAGCACCAG 62.705 72.222 0.00 0.00 0.00 4.00
1029 1043 1.651240 ATACACCCACCGTCTCGTCG 61.651 60.000 0.00 0.00 0.00 5.12
1055 1089 1.080501 CAAGTCTCTCGCCGAAGCA 60.081 57.895 0.00 0.00 39.83 3.91
1061 1095 1.568612 CTCTCGCCGAAGCAAAGCAA 61.569 55.000 0.00 0.00 39.83 3.91
1065 1099 0.594796 CGCCGAAGCAAAGCAAAGTT 60.595 50.000 0.00 0.00 39.83 2.66
1066 1100 1.334599 CGCCGAAGCAAAGCAAAGTTA 60.335 47.619 0.00 0.00 39.83 2.24
1068 1102 2.542824 GCCGAAGCAAAGCAAAGTTACA 60.543 45.455 0.00 0.00 39.53 2.41
1069 1103 3.042887 CCGAAGCAAAGCAAAGTTACAC 58.957 45.455 0.00 0.00 0.00 2.90
1070 1104 3.488384 CCGAAGCAAAGCAAAGTTACACA 60.488 43.478 0.00 0.00 0.00 3.72
1071 1105 3.725740 CGAAGCAAAGCAAAGTTACACAG 59.274 43.478 0.00 0.00 0.00 3.66
1147 1200 3.069318 GTCTCCTTCTCCGCCCGT 61.069 66.667 0.00 0.00 0.00 5.28
1468 1523 2.668632 GAGATCCGGCCACCAACA 59.331 61.111 2.24 0.00 0.00 3.33
1503 1558 2.217112 CGAAGCCGCTGTACATAGC 58.783 57.895 0.00 0.00 40.29 2.97
1529 1584 2.764128 TCTGGATCTCCCCGTGGC 60.764 66.667 0.00 0.00 34.29 5.01
1551 1606 1.073923 GTTGTGGGGAGTCCTTGATGT 59.926 52.381 9.58 0.00 36.20 3.06
1552 1607 1.444933 TGTGGGGAGTCCTTGATGTT 58.555 50.000 9.58 0.00 36.20 2.71
1553 1608 1.351017 TGTGGGGAGTCCTTGATGTTC 59.649 52.381 9.58 0.00 36.20 3.18
1560 1615 4.438148 GGAGTCCTTGATGTTCTTCTAGC 58.562 47.826 0.41 0.00 0.00 3.42
1588 1643 1.063266 GGAGGAGTGGTCAGAGGAGAT 60.063 57.143 0.00 0.00 0.00 2.75
1695 1750 7.895582 GTACTGTAATTAGAGTACAAGCTCG 57.104 40.000 32.47 4.61 46.43 5.03
1715 1785 3.796717 TCGGAATCAGATGTTTCGATTCG 59.203 43.478 0.00 0.00 39.76 3.34
1792 1862 2.267426 TGCCGTCGTACATCTGAATTG 58.733 47.619 0.00 0.00 0.00 2.32
1798 1868 4.561213 CGTCGTACATCTGAATTGCAGTTA 59.439 41.667 0.00 0.00 45.14 2.24
1811 1881 4.890158 TTGCAGTTAGTTCTGGATCTGA 57.110 40.909 0.00 0.00 35.85 3.27
1817 1887 7.070447 TGCAGTTAGTTCTGGATCTGAATATCT 59.930 37.037 0.00 0.00 36.12 1.98
1823 1893 8.311395 AGTTCTGGATCTGAATATCTGTTACA 57.689 34.615 0.00 0.00 0.00 2.41
1824 1894 8.420222 AGTTCTGGATCTGAATATCTGTTACAG 58.580 37.037 5.94 5.94 31.24 2.74
1837 2722 3.510360 TCTGTTACAGTAGCTCTGAACCC 59.490 47.826 12.41 5.57 46.27 4.11
1914 2799 9.690913 ATCAGTTAATTCTGGATCTGAAAATCA 57.309 29.630 5.96 0.00 35.94 2.57
1915 2800 9.519191 TCAGTTAATTCTGGATCTGAAAATCAA 57.481 29.630 5.96 0.00 36.25 2.57
1920 2805 7.729124 ATTCTGGATCTGAAAATCAATTGGT 57.271 32.000 5.42 0.00 0.00 3.67
1921 2806 7.543359 TTCTGGATCTGAAAATCAATTGGTT 57.457 32.000 5.42 0.78 0.00 3.67
1922 2807 7.161773 TCTGGATCTGAAAATCAATTGGTTC 57.838 36.000 3.99 7.34 0.00 3.62
1923 2808 6.950041 TCTGGATCTGAAAATCAATTGGTTCT 59.050 34.615 3.99 0.00 0.00 3.01
1924 2809 6.927416 TGGATCTGAAAATCAATTGGTTCTG 58.073 36.000 3.99 10.22 0.00 3.02
1925 2810 6.720748 TGGATCTGAAAATCAATTGGTTCTGA 59.279 34.615 19.24 19.24 34.02 3.27
1926 2811 7.233144 TGGATCTGAAAATCAATTGGTTCTGAA 59.767 33.333 20.07 9.71 33.48 3.02
1927 2812 7.543520 GGATCTGAAAATCAATTGGTTCTGAAC 59.456 37.037 20.07 12.05 33.48 3.18
2011 2899 8.853077 ATCAGTTAATTCTTGATCTGAACACA 57.147 30.769 0.00 0.00 35.94 3.72
2012 2900 8.315391 TCAGTTAATTCTTGATCTGAACACAG 57.685 34.615 0.00 0.00 0.00 3.66
2013 2901 7.020010 CAGTTAATTCTTGATCTGAACACAGC 58.980 38.462 0.00 0.00 0.00 4.40
2114 3045 2.433604 TGATTCTGGATCTGAGAGCACC 59.566 50.000 0.00 0.00 35.69 5.01
2178 3109 6.669278 TCTACTAACAATGACGCAGCTATAG 58.331 40.000 0.00 0.00 0.00 1.31
2324 3272 2.360350 AGCGACCATGGCAGGTTG 60.360 61.111 13.04 15.19 43.38 3.77
2399 3347 0.546122 AATCCATCGGCCAGCTTGTA 59.454 50.000 2.24 0.00 0.00 2.41
2400 3348 0.767375 ATCCATCGGCCAGCTTGTAT 59.233 50.000 2.24 0.00 0.00 2.29
2401 3349 0.179048 TCCATCGGCCAGCTTGTATG 60.179 55.000 2.24 0.00 0.00 2.39
2402 3350 0.464373 CCATCGGCCAGCTTGTATGT 60.464 55.000 2.24 0.00 0.00 2.29
2403 3351 1.202639 CCATCGGCCAGCTTGTATGTA 60.203 52.381 2.24 0.00 0.00 2.29
2408 3356 0.377203 GCCAGCTTGTATGTAACGCC 59.623 55.000 0.00 0.00 0.00 5.68
2421 3369 1.312371 TAACGCCAATCCTGCTTGCC 61.312 55.000 0.00 0.00 0.00 4.52
2448 3396 1.742831 TCCAGCGAATTTATGTGCCAC 59.257 47.619 0.00 0.00 0.00 5.01
2451 3399 3.429085 CAGCGAATTTATGTGCCACTTC 58.571 45.455 0.00 0.00 0.00 3.01
2469 3417 3.933332 ACTTCGTAATGTAAAGCCTGCTC 59.067 43.478 0.00 0.00 0.00 4.26
2470 3418 2.536365 TCGTAATGTAAAGCCTGCTCG 58.464 47.619 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.281484 ACCATGGCACGACGCTTT 60.281 55.556 13.04 0.00 41.91 3.51
1 2 2.742372 GACCATGGCACGACGCTT 60.742 61.111 13.04 0.00 41.91 4.68
4 5 3.179265 GACGACCATGGCACGACG 61.179 66.667 29.62 20.74 0.00 5.12
5 6 2.048597 TGACGACCATGGCACGAC 60.049 61.111 29.62 24.81 0.00 4.34
6 7 2.048597 GTGACGACCATGGCACGA 60.049 61.111 29.62 12.36 0.00 4.35
7 8 3.118454 GGTGACGACCATGGCACG 61.118 66.667 23.94 23.94 42.59 5.34
28 29 4.681978 AGTGTGTTCGCTCCCCGC 62.682 66.667 0.00 0.00 36.73 6.13
29 30 2.738521 CAGTGTGTTCGCTCCCCG 60.739 66.667 0.00 0.00 38.61 5.73
30 31 3.050275 GCAGTGTGTTCGCTCCCC 61.050 66.667 0.00 0.00 31.46 4.81
31 32 3.050275 GGCAGTGTGTTCGCTCCC 61.050 66.667 0.00 0.00 31.46 4.30
32 33 1.166531 AAAGGCAGTGTGTTCGCTCC 61.167 55.000 0.00 0.00 31.46 4.70
33 34 0.663153 AAAAGGCAGTGTGTTCGCTC 59.337 50.000 0.00 0.00 31.46 5.03
34 35 1.102978 AAAAAGGCAGTGTGTTCGCT 58.897 45.000 0.00 0.00 34.45 4.93
35 36 3.641031 AAAAAGGCAGTGTGTTCGC 57.359 47.368 0.00 0.00 0.00 4.70
50 51 3.085533 AGTACACACAGGCACACAAAAA 58.914 40.909 0.00 0.00 0.00 1.94
51 52 2.717390 AGTACACACAGGCACACAAAA 58.283 42.857 0.00 0.00 0.00 2.44
52 53 2.411628 AGTACACACAGGCACACAAA 57.588 45.000 0.00 0.00 0.00 2.83
53 54 2.411628 AAGTACACACAGGCACACAA 57.588 45.000 0.00 0.00 0.00 3.33
54 55 2.013400 CAAAGTACACACAGGCACACA 58.987 47.619 0.00 0.00 0.00 3.72
55 56 2.014128 ACAAAGTACACACAGGCACAC 58.986 47.619 0.00 0.00 0.00 3.82
56 57 2.013400 CACAAAGTACACACAGGCACA 58.987 47.619 0.00 0.00 0.00 4.57
57 58 1.333619 CCACAAAGTACACACAGGCAC 59.666 52.381 0.00 0.00 0.00 5.01
58 59 1.210722 TCCACAAAGTACACACAGGCA 59.789 47.619 0.00 0.00 0.00 4.75
59 60 1.961793 TCCACAAAGTACACACAGGC 58.038 50.000 0.00 0.00 0.00 4.85
60 61 9.778741 ATATATTATCCACAAAGTACACACAGG 57.221 33.333 0.00 0.00 0.00 4.00
62 63 9.554395 CCATATATTATCCACAAAGTACACACA 57.446 33.333 0.00 0.00 0.00 3.72
63 64 9.555727 ACCATATATTATCCACAAAGTACACAC 57.444 33.333 0.00 0.00 0.00 3.82
64 65 9.772973 GACCATATATTATCCACAAAGTACACA 57.227 33.333 0.00 0.00 0.00 3.72
65 66 9.998106 AGACCATATATTATCCACAAAGTACAC 57.002 33.333 0.00 0.00 0.00 2.90
109 110 7.466725 CGAAGAGGTTGTCTTGTTGAATTAACA 60.467 37.037 0.00 0.00 46.21 2.41
110 111 6.851330 CGAAGAGGTTGTCTTGTTGAATTAAC 59.149 38.462 0.00 0.00 46.21 2.01
111 112 6.540914 ACGAAGAGGTTGTCTTGTTGAATTAA 59.459 34.615 0.00 0.00 46.21 1.40
112 113 6.053005 ACGAAGAGGTTGTCTTGTTGAATTA 58.947 36.000 0.00 0.00 46.21 1.40
113 114 4.881850 ACGAAGAGGTTGTCTTGTTGAATT 59.118 37.500 0.00 0.00 46.21 2.17
114 115 4.451900 ACGAAGAGGTTGTCTTGTTGAAT 58.548 39.130 0.00 0.00 46.21 2.57
115 116 3.869065 ACGAAGAGGTTGTCTTGTTGAA 58.131 40.909 0.00 0.00 46.21 2.69
116 117 3.536956 ACGAAGAGGTTGTCTTGTTGA 57.463 42.857 0.00 0.00 46.21 3.18
117 118 4.116961 TGTACGAAGAGGTTGTCTTGTTG 58.883 43.478 0.00 0.00 46.21 3.33
118 119 4.369182 CTGTACGAAGAGGTTGTCTTGTT 58.631 43.478 0.00 0.00 46.21 2.83
119 120 3.799232 GCTGTACGAAGAGGTTGTCTTGT 60.799 47.826 0.00 0.00 46.21 3.16
120 121 2.731976 GCTGTACGAAGAGGTTGTCTTG 59.268 50.000 0.00 0.00 46.21 3.02
122 123 2.029828 CAGCTGTACGAAGAGGTTGTCT 60.030 50.000 5.25 0.00 36.94 3.41
123 124 2.329379 CAGCTGTACGAAGAGGTTGTC 58.671 52.381 5.25 0.00 0.00 3.18
124 125 1.000955 CCAGCTGTACGAAGAGGTTGT 59.999 52.381 13.81 0.00 0.00 3.32
125 126 1.000955 ACCAGCTGTACGAAGAGGTTG 59.999 52.381 13.81 0.00 0.00 3.77
126 127 1.339097 ACCAGCTGTACGAAGAGGTT 58.661 50.000 13.81 0.00 0.00 3.50
127 128 1.339097 AACCAGCTGTACGAAGAGGT 58.661 50.000 13.81 0.00 0.00 3.85
128 129 2.416972 GGTAACCAGCTGTACGAAGAGG 60.417 54.545 13.81 0.00 0.00 3.69
129 130 2.230508 TGGTAACCAGCTGTACGAAGAG 59.769 50.000 13.81 0.00 0.00 2.85
130 131 2.230508 CTGGTAACCAGCTGTACGAAGA 59.769 50.000 13.81 0.00 45.13 2.87
131 132 2.607187 CTGGTAACCAGCTGTACGAAG 58.393 52.381 13.81 7.10 45.13 3.79
132 133 2.736144 CTGGTAACCAGCTGTACGAA 57.264 50.000 13.81 1.28 45.13 3.85
142 143 2.521451 TTCGGGCAGCTGGTAACCA 61.521 57.895 17.12 0.00 0.00 3.67
143 144 2.038837 GTTCGGGCAGCTGGTAACC 61.039 63.158 17.12 7.75 0.00 2.85
144 145 2.388232 CGTTCGGGCAGCTGGTAAC 61.388 63.158 17.12 0.00 0.00 2.50
145 146 1.534336 TACGTTCGGGCAGCTGGTAA 61.534 55.000 17.12 0.00 0.00 2.85
146 147 1.978080 TACGTTCGGGCAGCTGGTA 60.978 57.895 17.12 4.21 0.00 3.25
147 148 3.307906 TACGTTCGGGCAGCTGGT 61.308 61.111 17.12 5.28 0.00 4.00
148 149 2.781595 AAGTACGTTCGGGCAGCTGG 62.782 60.000 17.12 0.00 0.00 4.85
149 150 0.108992 TAAGTACGTTCGGGCAGCTG 60.109 55.000 10.11 10.11 0.00 4.24
150 151 0.172803 CTAAGTACGTTCGGGCAGCT 59.827 55.000 0.00 0.00 0.00 4.24
151 152 0.171903 TCTAAGTACGTTCGGGCAGC 59.828 55.000 0.00 0.00 0.00 5.25
152 153 2.159282 ACATCTAAGTACGTTCGGGCAG 60.159 50.000 0.00 0.00 0.00 4.85
153 154 1.820519 ACATCTAAGTACGTTCGGGCA 59.179 47.619 0.00 0.00 0.00 5.36
154 155 2.098770 AGACATCTAAGTACGTTCGGGC 59.901 50.000 0.00 0.00 0.00 6.13
155 156 3.128242 ACAGACATCTAAGTACGTTCGGG 59.872 47.826 0.00 0.00 0.00 5.14
156 157 4.096311 CACAGACATCTAAGTACGTTCGG 58.904 47.826 0.00 0.00 0.00 4.30
157 158 4.720090 ACACAGACATCTAAGTACGTTCG 58.280 43.478 0.00 0.00 0.00 3.95
158 159 5.919141 ACAACACAGACATCTAAGTACGTTC 59.081 40.000 0.00 0.00 0.00 3.95
159 160 5.690409 CACAACACAGACATCTAAGTACGTT 59.310 40.000 0.00 0.00 0.00 3.99
160 161 5.220381 CACAACACAGACATCTAAGTACGT 58.780 41.667 0.00 0.00 0.00 3.57
161 162 5.220381 ACACAACACAGACATCTAAGTACG 58.780 41.667 0.00 0.00 0.00 3.67
162 163 6.144080 GTGACACAACACAGACATCTAAGTAC 59.856 42.308 0.00 0.00 40.11 2.73
163 164 6.040504 AGTGACACAACACAGACATCTAAGTA 59.959 38.462 8.59 0.00 42.45 2.24
164 165 5.050490 GTGACACAACACAGACATCTAAGT 58.950 41.667 0.00 0.00 40.11 2.24
165 166 5.176406 CAGTGACACAACACAGACATCTAAG 59.824 44.000 8.59 0.00 42.45 2.18
166 167 5.049828 CAGTGACACAACACAGACATCTAA 58.950 41.667 8.59 0.00 42.45 2.10
167 168 4.099419 ACAGTGACACAACACAGACATCTA 59.901 41.667 8.59 0.00 42.45 1.98
168 169 3.118629 ACAGTGACACAACACAGACATCT 60.119 43.478 8.59 0.00 42.45 2.90
169 170 3.001634 CACAGTGACACAACACAGACATC 59.998 47.826 8.59 0.00 42.45 3.06
170 171 2.938451 CACAGTGACACAACACAGACAT 59.062 45.455 8.59 0.00 42.45 3.06
171 172 2.345876 CACAGTGACACAACACAGACA 58.654 47.619 8.59 0.00 42.45 3.41
172 173 1.062587 GCACAGTGACACAACACAGAC 59.937 52.381 4.15 0.00 42.45 3.51
173 174 1.066215 AGCACAGTGACACAACACAGA 60.066 47.619 4.15 0.00 42.45 3.41
174 175 1.372582 AGCACAGTGACACAACACAG 58.627 50.000 4.15 0.00 42.45 3.66
175 176 2.682155 TAGCACAGTGACACAACACA 57.318 45.000 4.15 0.00 42.45 3.72
176 177 4.273480 AGAAATAGCACAGTGACACAACAC 59.727 41.667 4.15 0.00 40.60 3.32
177 178 4.450976 AGAAATAGCACAGTGACACAACA 58.549 39.130 4.15 0.00 0.00 3.33
178 179 5.424121 AAGAAATAGCACAGTGACACAAC 57.576 39.130 4.15 0.00 0.00 3.32
179 180 5.822519 AGAAAGAAATAGCACAGTGACACAA 59.177 36.000 4.15 0.00 0.00 3.33
180 181 5.368145 AGAAAGAAATAGCACAGTGACACA 58.632 37.500 4.15 0.00 0.00 3.72
181 182 5.698545 AGAGAAAGAAATAGCACAGTGACAC 59.301 40.000 4.15 0.00 0.00 3.67
182 183 5.858381 AGAGAAAGAAATAGCACAGTGACA 58.142 37.500 4.15 0.00 0.00 3.58
183 184 5.928839 TGAGAGAAAGAAATAGCACAGTGAC 59.071 40.000 4.15 0.00 0.00 3.67
184 185 5.928839 GTGAGAGAAAGAAATAGCACAGTGA 59.071 40.000 4.15 0.00 0.00 3.41
185 186 5.121454 GGTGAGAGAAAGAAATAGCACAGTG 59.879 44.000 0.00 0.00 0.00 3.66
186 187 5.241662 GGTGAGAGAAAGAAATAGCACAGT 58.758 41.667 0.00 0.00 0.00 3.55
187 188 4.328440 CGGTGAGAGAAAGAAATAGCACAG 59.672 45.833 0.00 0.00 0.00 3.66
188 189 4.245660 CGGTGAGAGAAAGAAATAGCACA 58.754 43.478 0.00 0.00 0.00 4.57
189 190 3.062774 GCGGTGAGAGAAAGAAATAGCAC 59.937 47.826 0.00 0.00 0.00 4.40
190 191 3.262420 GCGGTGAGAGAAAGAAATAGCA 58.738 45.455 0.00 0.00 0.00 3.49
191 192 2.609916 GGCGGTGAGAGAAAGAAATAGC 59.390 50.000 0.00 0.00 0.00 2.97
192 193 3.861840 TGGCGGTGAGAGAAAGAAATAG 58.138 45.455 0.00 0.00 0.00 1.73
193 194 3.973206 TGGCGGTGAGAGAAAGAAATA 57.027 42.857 0.00 0.00 0.00 1.40
194 195 2.859165 TGGCGGTGAGAGAAAGAAAT 57.141 45.000 0.00 0.00 0.00 2.17
195 196 2.158813 ACTTGGCGGTGAGAGAAAGAAA 60.159 45.455 0.00 0.00 0.00 2.52
196 197 1.416401 ACTTGGCGGTGAGAGAAAGAA 59.584 47.619 0.00 0.00 0.00 2.52
197 198 1.048601 ACTTGGCGGTGAGAGAAAGA 58.951 50.000 0.00 0.00 0.00 2.52
198 199 1.151668 CACTTGGCGGTGAGAGAAAG 58.848 55.000 4.72 0.00 39.34 2.62
199 200 0.250295 CCACTTGGCGGTGAGAGAAA 60.250 55.000 11.16 0.00 39.34 2.52
200 201 1.371183 CCACTTGGCGGTGAGAGAA 59.629 57.895 11.16 0.00 39.34 2.87
201 202 2.583441 CCCACTTGGCGGTGAGAGA 61.583 63.158 11.16 0.00 39.34 3.10
202 203 2.046892 CCCACTTGGCGGTGAGAG 60.047 66.667 11.16 0.00 39.34 3.20
216 217 1.133513 AGACATTTTGTGTGGAGCCCA 60.134 47.619 0.00 0.00 42.36 5.36
217 218 1.620822 AGACATTTTGTGTGGAGCCC 58.379 50.000 0.00 0.00 42.36 5.19
218 219 2.863704 GCAAGACATTTTGTGTGGAGCC 60.864 50.000 0.00 0.00 42.36 4.70
219 220 2.397549 GCAAGACATTTTGTGTGGAGC 58.602 47.619 0.00 0.00 42.36 4.70
220 221 2.624838 AGGCAAGACATTTTGTGTGGAG 59.375 45.455 0.00 0.00 42.36 3.86
221 222 2.665165 AGGCAAGACATTTTGTGTGGA 58.335 42.857 0.00 0.00 42.36 4.02
222 223 3.305335 GGTAGGCAAGACATTTTGTGTGG 60.305 47.826 0.00 0.00 42.36 4.17
223 224 3.569701 AGGTAGGCAAGACATTTTGTGTG 59.430 43.478 0.00 0.00 42.36 3.82
224 225 3.821033 GAGGTAGGCAAGACATTTTGTGT 59.179 43.478 0.00 0.00 45.83 3.72
225 226 3.820467 TGAGGTAGGCAAGACATTTTGTG 59.180 43.478 0.00 0.00 0.00 3.33
226 227 4.098914 TGAGGTAGGCAAGACATTTTGT 57.901 40.909 0.00 0.00 0.00 2.83
227 228 4.096984 GGATGAGGTAGGCAAGACATTTTG 59.903 45.833 0.00 0.00 0.00 2.44
228 229 4.263905 TGGATGAGGTAGGCAAGACATTTT 60.264 41.667 0.00 0.00 0.00 1.82
229 230 3.266772 TGGATGAGGTAGGCAAGACATTT 59.733 43.478 0.00 0.00 0.00 2.32
230 231 2.846206 TGGATGAGGTAGGCAAGACATT 59.154 45.455 0.00 0.00 0.00 2.71
231 232 2.481441 TGGATGAGGTAGGCAAGACAT 58.519 47.619 0.00 0.00 0.00 3.06
232 233 1.951209 TGGATGAGGTAGGCAAGACA 58.049 50.000 0.00 0.00 0.00 3.41
233 234 2.224402 GGATGGATGAGGTAGGCAAGAC 60.224 54.545 0.00 0.00 0.00 3.01
234 235 2.050144 GGATGGATGAGGTAGGCAAGA 58.950 52.381 0.00 0.00 0.00 3.02
235 236 1.072965 GGGATGGATGAGGTAGGCAAG 59.927 57.143 0.00 0.00 0.00 4.01
236 237 1.140312 GGGATGGATGAGGTAGGCAA 58.860 55.000 0.00 0.00 0.00 4.52
237 238 1.121407 CGGGATGGATGAGGTAGGCA 61.121 60.000 0.00 0.00 0.00 4.75
238 239 1.674057 CGGGATGGATGAGGTAGGC 59.326 63.158 0.00 0.00 0.00 3.93
239 240 1.194781 CCCGGGATGGATGAGGTAGG 61.195 65.000 18.48 0.00 42.00 3.18
240 241 1.831652 GCCCGGGATGGATGAGGTAG 61.832 65.000 29.31 0.00 42.00 3.18
241 242 1.841556 GCCCGGGATGGATGAGGTA 60.842 63.158 29.31 0.00 42.00 3.08
242 243 3.171388 GCCCGGGATGGATGAGGT 61.171 66.667 29.31 0.00 42.00 3.85
243 244 1.999634 AAAGCCCGGGATGGATGAGG 62.000 60.000 29.31 0.00 42.00 3.86
244 245 0.536006 GAAAGCCCGGGATGGATGAG 60.536 60.000 29.31 0.00 42.00 2.90
245 246 1.531748 GAAAGCCCGGGATGGATGA 59.468 57.895 29.31 0.00 42.00 2.92
246 247 1.529244 GGAAAGCCCGGGATGGATG 60.529 63.158 29.31 0.00 42.00 3.51
247 248 2.768022 GGGAAAGCCCGGGATGGAT 61.768 63.158 29.31 8.48 46.48 3.41
248 249 3.416880 GGGAAAGCCCGGGATGGA 61.417 66.667 29.31 0.00 46.48 3.41
257 258 0.893727 AACATGACACCGGGAAAGCC 60.894 55.000 6.32 0.00 0.00 4.35
258 259 0.240945 CAACATGACACCGGGAAAGC 59.759 55.000 6.32 0.00 0.00 3.51
259 260 1.890876 TCAACATGACACCGGGAAAG 58.109 50.000 6.32 0.00 0.00 2.62
260 261 2.350057 TTCAACATGACACCGGGAAA 57.650 45.000 6.32 0.00 0.00 3.13
261 262 2.350057 TTTCAACATGACACCGGGAA 57.650 45.000 6.32 0.00 0.00 3.97
262 263 2.577606 ATTTCAACATGACACCGGGA 57.422 45.000 6.32 0.00 0.00 5.14
263 264 3.574614 GAAATTTCAACATGACACCGGG 58.425 45.455 13.40 0.00 0.00 5.73
264 265 3.255642 AGGAAATTTCAACATGACACCGG 59.744 43.478 19.49 0.00 0.00 5.28
265 266 4.229096 CAGGAAATTTCAACATGACACCG 58.771 43.478 19.49 0.00 0.00 4.94
266 267 3.989817 GCAGGAAATTTCAACATGACACC 59.010 43.478 19.49 0.00 0.00 4.16
267 268 4.874970 AGCAGGAAATTTCAACATGACAC 58.125 39.130 19.49 0.00 0.00 3.67
268 269 5.291178 CAAGCAGGAAATTTCAACATGACA 58.709 37.500 19.49 0.00 0.00 3.58
269 270 4.687483 CCAAGCAGGAAATTTCAACATGAC 59.313 41.667 19.49 8.59 41.22 3.06
270 271 4.588106 TCCAAGCAGGAAATTTCAACATGA 59.412 37.500 19.49 4.62 45.65 3.07
271 272 4.885413 TCCAAGCAGGAAATTTCAACATG 58.115 39.130 19.49 12.52 45.65 3.21
284 285 2.408271 TGAAGCTGTATCCAAGCAGG 57.592 50.000 0.00 0.00 39.47 4.85
285 286 2.681848 CCTTGAAGCTGTATCCAAGCAG 59.318 50.000 0.00 0.00 35.83 4.24
286 287 2.040278 ACCTTGAAGCTGTATCCAAGCA 59.960 45.455 0.00 0.00 35.83 3.91
287 288 2.716217 ACCTTGAAGCTGTATCCAAGC 58.284 47.619 0.00 0.00 35.83 4.01
288 289 6.817765 TTAAACCTTGAAGCTGTATCCAAG 57.182 37.500 0.00 0.00 36.64 3.61
289 290 6.294508 GCTTTAAACCTTGAAGCTGTATCCAA 60.295 38.462 8.24 0.00 41.83 3.53
290 291 5.183140 GCTTTAAACCTTGAAGCTGTATCCA 59.817 40.000 8.24 0.00 41.83 3.41
291 292 5.641709 GCTTTAAACCTTGAAGCTGTATCC 58.358 41.667 8.24 0.00 41.83 2.59
292 293 5.121768 TCGCTTTAAACCTTGAAGCTGTATC 59.878 40.000 12.33 0.00 42.65 2.24
293 294 5.001232 TCGCTTTAAACCTTGAAGCTGTAT 58.999 37.500 12.33 0.00 42.65 2.29
294 295 4.212636 GTCGCTTTAAACCTTGAAGCTGTA 59.787 41.667 12.33 0.00 42.65 2.74
295 296 3.003378 GTCGCTTTAAACCTTGAAGCTGT 59.997 43.478 12.33 0.00 42.65 4.40
296 297 3.555518 GTCGCTTTAAACCTTGAAGCTG 58.444 45.455 12.33 7.47 42.65 4.24
297 298 2.552743 GGTCGCTTTAAACCTTGAAGCT 59.447 45.455 12.33 0.00 42.65 3.74
298 299 2.664698 CGGTCGCTTTAAACCTTGAAGC 60.665 50.000 5.97 5.97 41.69 3.86
299 300 2.095919 CCGGTCGCTTTAAACCTTGAAG 60.096 50.000 0.00 0.00 33.14 3.02
300 301 1.874872 CCGGTCGCTTTAAACCTTGAA 59.125 47.619 0.00 0.00 33.14 2.69
301 302 1.515081 CCGGTCGCTTTAAACCTTGA 58.485 50.000 0.00 0.00 33.14 3.02
302 303 0.519961 CCCGGTCGCTTTAAACCTTG 59.480 55.000 0.00 0.00 33.14 3.61
303 304 0.397564 TCCCGGTCGCTTTAAACCTT 59.602 50.000 0.00 0.00 33.14 3.50
304 305 0.616891 ATCCCGGTCGCTTTAAACCT 59.383 50.000 0.00 0.00 33.14 3.50
305 306 1.456296 AATCCCGGTCGCTTTAAACC 58.544 50.000 0.00 0.00 0.00 3.27
306 307 3.002102 TGTAATCCCGGTCGCTTTAAAC 58.998 45.455 0.00 0.00 0.00 2.01
307 308 3.331478 TGTAATCCCGGTCGCTTTAAA 57.669 42.857 0.00 0.00 0.00 1.52
308 309 3.331478 TTGTAATCCCGGTCGCTTTAA 57.669 42.857 0.00 0.00 0.00 1.52
309 310 3.331478 TTTGTAATCCCGGTCGCTTTA 57.669 42.857 0.00 0.00 0.00 1.85
310 311 2.188062 TTTGTAATCCCGGTCGCTTT 57.812 45.000 0.00 0.00 0.00 3.51
311 312 2.081462 CTTTTGTAATCCCGGTCGCTT 58.919 47.619 0.00 0.00 0.00 4.68
312 313 1.276989 TCTTTTGTAATCCCGGTCGCT 59.723 47.619 0.00 0.00 0.00 4.93
313 314 1.395954 GTCTTTTGTAATCCCGGTCGC 59.604 52.381 0.00 0.00 0.00 5.19
314 315 1.657094 CGTCTTTTGTAATCCCGGTCG 59.343 52.381 0.00 0.00 0.00 4.79
315 316 2.004733 CCGTCTTTTGTAATCCCGGTC 58.995 52.381 0.00 0.00 0.00 4.79
316 317 1.339342 CCCGTCTTTTGTAATCCCGGT 60.339 52.381 0.00 0.00 32.32 5.28
317 318 1.375551 CCCGTCTTTTGTAATCCCGG 58.624 55.000 0.00 0.00 0.00 5.73
318 319 1.339342 ACCCCGTCTTTTGTAATCCCG 60.339 52.381 0.00 0.00 0.00 5.14
319 320 2.502142 ACCCCGTCTTTTGTAATCCC 57.498 50.000 0.00 0.00 0.00 3.85
320 321 5.987953 GTCTATACCCCGTCTTTTGTAATCC 59.012 44.000 0.00 0.00 0.00 3.01
321 322 6.814043 AGTCTATACCCCGTCTTTTGTAATC 58.186 40.000 0.00 0.00 0.00 1.75
322 323 6.803366 AGTCTATACCCCGTCTTTTGTAAT 57.197 37.500 0.00 0.00 0.00 1.89
323 324 6.211184 TGAAGTCTATACCCCGTCTTTTGTAA 59.789 38.462 0.00 0.00 0.00 2.41
324 325 5.716228 TGAAGTCTATACCCCGTCTTTTGTA 59.284 40.000 0.00 0.00 0.00 2.41
325 326 4.529377 TGAAGTCTATACCCCGTCTTTTGT 59.471 41.667 0.00 0.00 0.00 2.83
326 327 5.080969 TGAAGTCTATACCCCGTCTTTTG 57.919 43.478 0.00 0.00 0.00 2.44
327 328 4.161754 CCTGAAGTCTATACCCCGTCTTTT 59.838 45.833 0.00 0.00 0.00 2.27
328 329 3.705072 CCTGAAGTCTATACCCCGTCTTT 59.295 47.826 0.00 0.00 0.00 2.52
329 330 3.297736 CCTGAAGTCTATACCCCGTCTT 58.702 50.000 0.00 0.00 0.00 3.01
330 331 2.424523 CCCTGAAGTCTATACCCCGTCT 60.425 54.545 0.00 0.00 0.00 4.18
331 332 1.962100 CCCTGAAGTCTATACCCCGTC 59.038 57.143 0.00 0.00 0.00 4.79
332 333 1.572415 TCCCTGAAGTCTATACCCCGT 59.428 52.381 0.00 0.00 0.00 5.28
333 334 2.376695 TCCCTGAAGTCTATACCCCG 57.623 55.000 0.00 0.00 0.00 5.73
334 335 6.758806 TTAAATCCCTGAAGTCTATACCCC 57.241 41.667 0.00 0.00 0.00 4.95
335 336 7.974504 TCATTAAATCCCTGAAGTCTATACCC 58.025 38.462 0.00 0.00 0.00 3.69
336 337 9.442047 CATCATTAAATCCCTGAAGTCTATACC 57.558 37.037 0.00 0.00 0.00 2.73
337 338 9.442047 CCATCATTAAATCCCTGAAGTCTATAC 57.558 37.037 0.00 0.00 0.00 1.47
338 339 9.392506 TCCATCATTAAATCCCTGAAGTCTATA 57.607 33.333 0.00 0.00 0.00 1.31
339 340 8.280258 TCCATCATTAAATCCCTGAAGTCTAT 57.720 34.615 0.00 0.00 0.00 1.98
340 341 7.202130 CCTCCATCATTAAATCCCTGAAGTCTA 60.202 40.741 0.00 0.00 0.00 2.59
341 342 6.410157 CCTCCATCATTAAATCCCTGAAGTCT 60.410 42.308 0.00 0.00 0.00 3.24
342 343 5.767168 CCTCCATCATTAAATCCCTGAAGTC 59.233 44.000 0.00 0.00 0.00 3.01
343 344 5.194537 ACCTCCATCATTAAATCCCTGAAGT 59.805 40.000 0.00 0.00 0.00 3.01
344 345 5.699143 ACCTCCATCATTAAATCCCTGAAG 58.301 41.667 0.00 0.00 0.00 3.02
345 346 5.732331 ACCTCCATCATTAAATCCCTGAA 57.268 39.130 0.00 0.00 0.00 3.02
346 347 5.193527 TGAACCTCCATCATTAAATCCCTGA 59.806 40.000 0.00 0.00 0.00 3.86
347 348 5.448654 TGAACCTCCATCATTAAATCCCTG 58.551 41.667 0.00 0.00 0.00 4.45
348 349 5.732331 TGAACCTCCATCATTAAATCCCT 57.268 39.130 0.00 0.00 0.00 4.20
349 350 6.983906 AATGAACCTCCATCATTAAATCCC 57.016 37.500 0.18 0.00 43.73 3.85
350 351 9.971922 CTAAAATGAACCTCCATCATTAAATCC 57.028 33.333 2.51 0.00 44.53 3.01
353 354 9.189156 CCTCTAAAATGAACCTCCATCATTAAA 57.811 33.333 2.51 0.00 44.53 1.52
354 355 8.556589 TCCTCTAAAATGAACCTCCATCATTAA 58.443 33.333 2.51 0.00 44.53 1.40
355 356 8.101309 TCCTCTAAAATGAACCTCCATCATTA 57.899 34.615 2.51 0.00 44.53 1.90
356 357 6.973642 TCCTCTAAAATGAACCTCCATCATT 58.026 36.000 0.00 0.00 46.62 2.57
357 358 6.581388 TCCTCTAAAATGAACCTCCATCAT 57.419 37.500 0.00 0.00 39.15 2.45
358 359 5.630069 GCTCCTCTAAAATGAACCTCCATCA 60.630 44.000 0.00 0.00 0.00 3.07
359 360 4.819088 GCTCCTCTAAAATGAACCTCCATC 59.181 45.833 0.00 0.00 0.00 3.51
360 361 4.476479 AGCTCCTCTAAAATGAACCTCCAT 59.524 41.667 0.00 0.00 0.00 3.41
361 362 3.846588 AGCTCCTCTAAAATGAACCTCCA 59.153 43.478 0.00 0.00 0.00 3.86
362 363 4.495690 AGCTCCTCTAAAATGAACCTCC 57.504 45.455 0.00 0.00 0.00 4.30
363 364 6.316640 GGTAAAGCTCCTCTAAAATGAACCTC 59.683 42.308 0.00 0.00 0.00 3.85
364 365 6.181190 GGTAAAGCTCCTCTAAAATGAACCT 58.819 40.000 0.00 0.00 0.00 3.50
365 366 5.944007 TGGTAAAGCTCCTCTAAAATGAACC 59.056 40.000 0.00 0.00 0.00 3.62
366 367 6.402226 CGTGGTAAAGCTCCTCTAAAATGAAC 60.402 42.308 0.00 0.00 0.00 3.18
367 368 5.642063 CGTGGTAAAGCTCCTCTAAAATGAA 59.358 40.000 0.00 0.00 0.00 2.57
368 369 5.175859 CGTGGTAAAGCTCCTCTAAAATGA 58.824 41.667 0.00 0.00 0.00 2.57
369 370 4.935808 ACGTGGTAAAGCTCCTCTAAAATG 59.064 41.667 0.00 0.00 0.00 2.32
370 371 5.161943 ACGTGGTAAAGCTCCTCTAAAAT 57.838 39.130 0.00 0.00 0.00 1.82
371 372 4.039488 TGACGTGGTAAAGCTCCTCTAAAA 59.961 41.667 0.00 0.00 0.00 1.52
372 373 3.575256 TGACGTGGTAAAGCTCCTCTAAA 59.425 43.478 0.00 0.00 0.00 1.85
373 374 3.159472 TGACGTGGTAAAGCTCCTCTAA 58.841 45.455 0.00 0.00 0.00 2.10
374 375 2.799017 TGACGTGGTAAAGCTCCTCTA 58.201 47.619 0.00 0.00 0.00 2.43
375 376 1.629043 TGACGTGGTAAAGCTCCTCT 58.371 50.000 0.00 0.00 0.00 3.69
376 377 2.338500 CTTGACGTGGTAAAGCTCCTC 58.662 52.381 0.00 0.00 0.00 3.71
377 378 1.002087 CCTTGACGTGGTAAAGCTCCT 59.998 52.381 0.00 0.00 0.00 3.69
378 379 1.270678 ACCTTGACGTGGTAAAGCTCC 60.271 52.381 0.00 0.00 35.80 4.70
379 380 2.165319 ACCTTGACGTGGTAAAGCTC 57.835 50.000 0.00 0.00 35.80 4.09
380 381 2.632987 AACCTTGACGTGGTAAAGCT 57.367 45.000 0.00 0.00 36.69 3.74
381 382 4.816786 TTAAACCTTGACGTGGTAAAGC 57.183 40.909 0.00 0.00 36.69 3.51
382 383 6.961576 TGATTTAAACCTTGACGTGGTAAAG 58.038 36.000 0.00 0.00 36.69 1.85
383 384 6.939132 TGATTTAAACCTTGACGTGGTAAA 57.061 33.333 0.00 0.00 36.69 2.01
384 385 6.939132 TTGATTTAAACCTTGACGTGGTAA 57.061 33.333 0.00 0.00 36.69 2.85
385 386 6.727215 GTTTGATTTAAACCTTGACGTGGTA 58.273 36.000 0.00 0.00 42.25 3.25
386 387 5.584442 GTTTGATTTAAACCTTGACGTGGT 58.416 37.500 0.00 0.00 42.25 4.16
413 414 6.698380 AGATTTAGATTACACCACAACGAGT 58.302 36.000 0.00 0.00 0.00 4.18
414 415 7.435488 CCTAGATTTAGATTACACCACAACGAG 59.565 40.741 0.00 0.00 0.00 4.18
415 416 7.262772 CCTAGATTTAGATTACACCACAACGA 58.737 38.462 0.00 0.00 0.00 3.85
416 417 6.018994 GCCTAGATTTAGATTACACCACAACG 60.019 42.308 0.00 0.00 0.00 4.10
430 432 6.261826 CCATTTCACTCCAAGCCTAGATTTAG 59.738 42.308 0.00 0.00 0.00 1.85
454 456 2.350772 CGAAGCATTTGTGACTTGGACC 60.351 50.000 0.00 0.00 0.00 4.46
512 514 4.392940 CACCAGACAACATTTTCTCTCCT 58.607 43.478 0.00 0.00 0.00 3.69
523 525 2.203337 GCAGCCCACCAGACAACA 60.203 61.111 0.00 0.00 0.00 3.33
526 528 2.203337 GTTGCAGCCCACCAGACA 60.203 61.111 0.00 0.00 0.00 3.41
528 530 0.396974 AAAAGTTGCAGCCCACCAGA 60.397 50.000 0.00 0.00 0.00 3.86
593 595 5.545658 ACATAATCCGTGTTTAAGCACAG 57.454 39.130 20.48 10.81 39.19 3.66
681 683 3.256879 TCGGATCTTGGATGAGCATCTAC 59.743 47.826 10.04 0.00 37.92 2.59
827 838 1.579429 GTGGGGTGCTTTTACTGCG 59.421 57.895 0.00 0.00 0.00 5.18
861 872 3.509740 GTTTCCGTTACTACTGCTCCTC 58.490 50.000 0.00 0.00 0.00 3.71
862 873 2.233186 GGTTTCCGTTACTACTGCTCCT 59.767 50.000 0.00 0.00 0.00 3.69
863 874 2.614779 GGTTTCCGTTACTACTGCTCC 58.385 52.381 0.00 0.00 0.00 4.70
865 876 2.756840 GGGTTTCCGTTACTACTGCT 57.243 50.000 0.00 0.00 0.00 4.24
1008 1022 1.141019 CGAGACGGTGGGTGTATGG 59.859 63.158 0.00 0.00 0.00 2.74
1029 1043 1.129437 GGCGAGAGACTTGTGAAATGC 59.871 52.381 0.00 0.00 34.96 3.56
1055 1089 4.734695 GCTTCTGCTGTGTAACTTTGCTTT 60.735 41.667 0.00 0.00 38.04 3.51
1061 1095 2.240493 ACGCTTCTGCTGTGTAACTT 57.760 45.000 0.00 0.00 38.04 2.66
1065 1099 0.456142 CGCTACGCTTCTGCTGTGTA 60.456 55.000 0.00 0.00 36.97 2.90
1066 1100 1.734477 CGCTACGCTTCTGCTGTGT 60.734 57.895 0.00 0.00 36.97 3.72
1068 1102 0.456312 GTACGCTACGCTTCTGCTGT 60.456 55.000 0.00 0.00 36.97 4.40
1069 1103 1.140407 GGTACGCTACGCTTCTGCTG 61.140 60.000 0.00 0.00 36.97 4.41
1070 1104 1.139095 GGTACGCTACGCTTCTGCT 59.861 57.895 0.00 0.00 36.97 4.24
1071 1105 3.689411 GGTACGCTACGCTTCTGC 58.311 61.111 0.00 0.00 0.00 4.26
1468 1523 3.343421 GCGTCGGCGAGTTGGTTT 61.343 61.111 16.53 0.00 41.33 3.27
1529 1584 0.764890 TCAAGGACTCCCCACAACAG 59.235 55.000 0.00 0.00 37.41 3.16
1551 1606 2.402564 CTCCCTCCATGGCTAGAAGAA 58.597 52.381 6.96 0.00 0.00 2.52
1552 1607 1.413662 CCTCCCTCCATGGCTAGAAGA 60.414 57.143 6.96 0.29 0.00 2.87
1553 1608 1.055040 CCTCCCTCCATGGCTAGAAG 58.945 60.000 6.96 0.00 0.00 2.85
1560 1615 1.307343 ACCACTCCTCCCTCCATGG 60.307 63.158 4.97 4.97 0.00 3.66
1588 1643 4.969359 CCTAAAACTAGATCCCCTCCTTCA 59.031 45.833 0.00 0.00 0.00 3.02
1695 1750 3.871594 ACCGAATCGAAACATCTGATTCC 59.128 43.478 3.36 0.00 43.10 3.01
1715 1785 2.244946 GGCAACAAGAGACGGAACC 58.755 57.895 0.00 0.00 0.00 3.62
1792 1862 7.384660 CAGATATTCAGATCCAGAACTAACTGC 59.615 40.741 0.73 0.00 36.67 4.40
1798 1868 8.311395 TGTAACAGATATTCAGATCCAGAACT 57.689 34.615 0.73 0.00 0.00 3.01
1811 1881 7.418025 GGGTTCAGAGCTACTGTAACAGATATT 60.418 40.741 18.27 0.00 45.86 1.28
1817 1887 2.230508 CGGGTTCAGAGCTACTGTAACA 59.769 50.000 18.27 0.00 45.86 2.41
1822 1892 2.969628 ATTCGGGTTCAGAGCTACTG 57.030 50.000 6.79 6.79 46.97 2.74
1823 1893 4.215908 TGATATTCGGGTTCAGAGCTACT 58.784 43.478 0.00 0.00 0.00 2.57
1824 1894 4.585955 TGATATTCGGGTTCAGAGCTAC 57.414 45.455 0.00 0.00 0.00 3.58
1900 2785 6.720748 TCAGAACCAATTGATTTTCAGATCCA 59.279 34.615 7.12 0.00 0.00 3.41
1901 2786 7.161773 TCAGAACCAATTGATTTTCAGATCC 57.838 36.000 7.12 0.00 0.00 3.36
1902 2787 8.458212 GTTCAGAACCAATTGATTTTCAGATC 57.542 34.615 7.12 5.00 0.00 2.75
1933 2818 9.383519 GTTGTTCAGATCCAGAATTAACTGATA 57.616 33.333 14.46 0.00 39.94 2.15
1934 2819 7.884877 TGTTGTTCAGATCCAGAATTAACTGAT 59.115 33.333 18.42 0.00 39.94 2.90
1935 2820 7.223584 TGTTGTTCAGATCCAGAATTAACTGA 58.776 34.615 18.42 0.00 39.94 3.41
1936 2821 7.173907 ACTGTTGTTCAGATCCAGAATTAACTG 59.826 37.037 19.22 19.22 46.27 3.16
1937 2822 7.227156 ACTGTTGTTCAGATCCAGAATTAACT 58.773 34.615 18.42 7.01 46.27 2.24
1938 2823 7.440523 ACTGTTGTTCAGATCCAGAATTAAC 57.559 36.000 14.67 14.67 46.27 2.01
1939 2824 9.739276 ATAACTGTTGTTCAGATCCAGAATTAA 57.261 29.630 2.69 0.00 46.27 1.40
1940 2825 9.739276 AATAACTGTTGTTCAGATCCAGAATTA 57.261 29.630 2.69 0.00 46.27 1.40
1941 2826 8.641498 AATAACTGTTGTTCAGATCCAGAATT 57.359 30.769 2.69 0.00 46.27 2.17
1942 2827 8.641498 AAATAACTGTTGTTCAGATCCAGAAT 57.359 30.769 2.69 0.00 46.27 2.40
1943 2828 7.939039 AGAAATAACTGTTGTTCAGATCCAGAA 59.061 33.333 16.30 0.00 46.27 3.02
1944 2829 7.388776 CAGAAATAACTGTTGTTCAGATCCAGA 59.611 37.037 16.30 0.00 46.27 3.86
1945 2830 7.388776 TCAGAAATAACTGTTGTTCAGATCCAG 59.611 37.037 16.30 0.00 46.27 3.86
2011 2899 0.244721 GGCGGAAAATCAGCAAAGCT 59.755 50.000 4.95 0.00 39.36 3.74
2012 2900 0.038343 TGGCGGAAAATCAGCAAAGC 60.038 50.000 4.95 0.00 39.36 3.51
2013 2901 2.264813 CATGGCGGAAAATCAGCAAAG 58.735 47.619 4.95 0.00 39.36 2.77
2114 3045 4.679654 GGCCAATTGTTGTTTAAGAAGACG 59.320 41.667 4.43 0.00 0.00 4.18
2178 3109 1.474077 ACCGTGGTACCTACGTTGATC 59.526 52.381 25.10 0.00 39.76 2.92
2399 3347 1.745087 CAAGCAGGATTGGCGTTACAT 59.255 47.619 0.00 0.00 36.08 2.29
2400 3348 1.164411 CAAGCAGGATTGGCGTTACA 58.836 50.000 0.00 0.00 36.08 2.41
2401 3349 0.179163 GCAAGCAGGATTGGCGTTAC 60.179 55.000 0.00 0.00 36.08 2.50
2402 3350 1.312371 GGCAAGCAGGATTGGCGTTA 61.312 55.000 8.06 0.00 44.47 3.18
2403 3351 2.639327 GGCAAGCAGGATTGGCGTT 61.639 57.895 8.06 0.00 44.47 4.84
2408 3356 0.749091 TCATCCGGCAAGCAGGATTG 60.749 55.000 21.50 16.71 46.19 2.67
2421 3369 3.748048 ACATAAATTCGCTGGATCATCCG 59.252 43.478 0.00 0.00 40.17 4.18
2448 3396 3.000322 CGAGCAGGCTTTACATTACGAAG 60.000 47.826 0.00 0.00 0.00 3.79
2451 3399 2.998668 CGAGCAGGCTTTACATTACG 57.001 50.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.