Multiple sequence alignment - TraesCS1D01G118100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G118100 chr1D 100.000 2375 0 0 1 2375 114084632 114082258 0.000000e+00 4386.0
1 TraesCS1D01G118100 chr1D 91.288 264 17 6 1971 2229 158109728 158109990 2.900000e-94 355.0
2 TraesCS1D01G118100 chr1D 83.077 390 35 16 990 1375 114313705 114313343 2.280000e-85 326.0
3 TraesCS1D01G118100 chr1D 81.643 414 38 22 968 1375 114065179 114064798 2.290000e-80 309.0
4 TraesCS1D01G118100 chr1B 84.652 1251 84 41 742 1943 174784513 174783322 0.000000e+00 1147.0
5 TraesCS1D01G118100 chr1B 82.493 377 31 16 1000 1375 174763488 174763146 4.960000e-77 298.0
6 TraesCS1D01G118100 chr1B 81.592 402 30 20 979 1375 175275884 175275522 2.310000e-75 292.0
7 TraesCS1D01G118100 chr1B 90.000 90 3 3 2283 2371 174783323 174783239 6.940000e-21 111.0
8 TraesCS1D01G118100 chr1A 92.754 759 38 13 696 1442 124190459 124189706 0.000000e+00 1081.0
9 TraesCS1D01G118100 chr1A 82.203 472 29 25 1516 1945 124189668 124189210 2.900000e-94 355.0
10 TraesCS1D01G118100 chr1A 83.733 375 28 12 1001 1375 124787261 124786920 8.190000e-85 324.0
11 TraesCS1D01G118100 chr1A 83.902 205 23 9 396 597 372890783 372890980 1.120000e-43 187.0
12 TraesCS1D01G118100 chr1A 92.473 93 2 1 2283 2375 124189207 124189120 6.890000e-26 128.0
13 TraesCS1D01G118100 chr4D 85.940 633 74 9 1 628 401947899 401948521 0.000000e+00 662.0
14 TraesCS1D01G118100 chr2D 92.366 262 15 5 1972 2229 64978488 64978228 3.730000e-98 368.0
15 TraesCS1D01G118100 chr2D 91.603 262 17 5 1972 2229 638340611 638340871 8.070000e-95 357.0
16 TraesCS1D01G118100 chr3B 91.045 268 19 5 1972 2235 168523811 168523545 8.070000e-95 357.0
17 TraesCS1D01G118100 chr3B 88.968 281 25 6 1957 2233 3765825 3766103 2.260000e-90 342.0
18 TraesCS1D01G118100 chr7D 91.221 262 18 5 1972 2229 209183927 209183667 3.760000e-93 351.0
19 TraesCS1D01G118100 chr7D 81.928 83 10 5 58 138 51235430 51235351 5.480000e-07 65.8
20 TraesCS1D01G118100 chr3D 91.221 262 18 5 1972 2229 421266370 421266630 3.760000e-93 351.0
21 TraesCS1D01G118100 chr3D 81.938 227 26 13 1139 1362 85896547 85896761 6.750000e-41 178.0
22 TraesCS1D01G118100 chr3D 81.356 236 29 14 1139 1362 86237044 86237276 6.750000e-41 178.0
23 TraesCS1D01G118100 chr5A 90.602 266 20 5 1968 2229 614360150 614360414 4.860000e-92 348.0
24 TraesCS1D01G118100 chr2B 89.744 273 23 5 1961 2229 475256396 475256667 6.280000e-91 344.0
25 TraesCS1D01G118100 chr4B 86.885 122 13 2 1328 1446 666756068 666755947 1.480000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G118100 chr1D 114082258 114084632 2374 True 4386.000000 4386 100.000000 1 2375 1 chr1D.!!$R2 2374
1 TraesCS1D01G118100 chr1B 174783239 174784513 1274 True 629.000000 1147 87.326000 742 2371 2 chr1B.!!$R3 1629
2 TraesCS1D01G118100 chr1A 124189120 124190459 1339 True 521.333333 1081 89.143333 696 2375 3 chr1A.!!$R2 1679
3 TraesCS1D01G118100 chr4D 401947899 401948521 622 False 662.000000 662 85.940000 1 628 1 chr4D.!!$F1 627

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 552 0.17576 TACGCCAGATCTGAGGTTGC 59.824 55.0 24.62 16.42 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 1561 0.034059 AAGCTCCTCCGTCACAACAG 59.966 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.709147 CGGAGCTCGGCCTTCAATTG 61.709 60.000 7.83 0.00 34.75 2.32
48 49 1.582968 CTTCAATTGCTGCGCAGGT 59.417 52.632 36.47 1.28 40.61 4.00
93 95 4.280494 CCGAGGATGGTACGGGCG 62.280 72.222 0.00 0.00 42.48 6.13
95 97 3.152400 GAGGATGGTACGGGCGGT 61.152 66.667 2.46 2.46 0.00 5.68
197 199 2.347490 CACGGGGAGGGTGTGAAG 59.653 66.667 0.00 0.00 35.66 3.02
205 207 1.545428 GGAGGGTGTGAAGTGAATGCA 60.545 52.381 0.00 0.00 0.00 3.96
206 208 1.537202 GAGGGTGTGAAGTGAATGCAC 59.463 52.381 0.00 0.00 45.49 4.57
214 216 3.499737 GTGAATGCACGAGGGCCG 61.500 66.667 0.00 0.00 45.44 6.13
223 225 2.904905 CGAGGGCCGTGGGATAAA 59.095 61.111 0.65 0.00 0.00 1.40
226 228 1.152756 AGGGCCGTGGGATAAATGC 60.153 57.895 0.00 0.00 0.00 3.56
233 235 1.270839 CGTGGGATAAATGCGGAGGAT 60.271 52.381 0.00 0.00 43.72 3.24
255 257 1.280421 GGGGGATGCAGATGATAGACC 59.720 57.143 0.00 0.00 0.00 3.85
256 258 1.066573 GGGGATGCAGATGATAGACCG 60.067 57.143 0.00 0.00 0.00 4.79
262 264 1.506493 CAGATGATAGACCGCAAGCC 58.494 55.000 0.00 0.00 0.00 4.35
320 322 4.947147 GGCAGGCACCGGTTGTCA 62.947 66.667 2.97 0.00 29.07 3.58
322 324 2.203139 CAGGCACCGGTTGTCACA 60.203 61.111 2.97 0.00 29.07 3.58
329 331 1.367471 CCGGTTGTCACAGAGAGCA 59.633 57.895 0.00 0.00 0.00 4.26
354 356 4.379243 CCAGCGGGTCAAGCGACT 62.379 66.667 0.00 0.00 42.21 4.18
362 365 2.915659 TCAAGCGACTCGTGGGGT 60.916 61.111 0.00 0.00 0.00 4.95
363 366 2.738521 CAAGCGACTCGTGGGGTG 60.739 66.667 0.00 0.00 0.00 4.61
368 371 4.083862 GACTCGTGGGGTGGCTCC 62.084 72.222 0.00 0.00 0.00 4.70
392 395 1.579932 CAAGCAGCAGCCTCACTTG 59.420 57.895 0.00 0.00 43.56 3.16
419 422 1.452833 GCAGAGGAGTGAATGGCCC 60.453 63.158 0.00 0.00 0.00 5.80
420 423 1.153289 CAGAGGAGTGAATGGCCCG 60.153 63.158 0.00 0.00 0.00 6.13
421 424 2.514824 GAGGAGTGAATGGCCCGC 60.515 66.667 0.00 0.00 0.00 6.13
446 449 4.976925 CGGCAGCGCTATCAGGGG 62.977 72.222 10.99 0.00 0.00 4.79
451 454 4.671569 GCGCTATCAGGGGAGCCG 62.672 72.222 0.00 0.00 35.13 5.52
503 506 3.554342 CGGAGGGGGATGAGCTGG 61.554 72.222 0.00 0.00 0.00 4.85
504 507 3.883549 GGAGGGGGATGAGCTGGC 61.884 72.222 0.00 0.00 0.00 4.85
505 508 2.771762 GAGGGGGATGAGCTGGCT 60.772 66.667 0.00 0.00 0.00 4.75
506 509 3.095163 AGGGGGATGAGCTGGCTG 61.095 66.667 0.00 0.00 0.00 4.85
507 510 3.415087 GGGGGATGAGCTGGCTGT 61.415 66.667 0.00 0.00 0.00 4.40
508 511 2.124403 GGGGATGAGCTGGCTGTG 60.124 66.667 0.00 0.00 0.00 3.66
509 512 2.124403 GGGATGAGCTGGCTGTGG 60.124 66.667 0.00 0.00 0.00 4.17
510 513 2.673200 GGGATGAGCTGGCTGTGGA 61.673 63.158 0.00 0.00 0.00 4.02
511 514 1.451028 GGATGAGCTGGCTGTGGAC 60.451 63.158 0.00 0.00 0.00 4.02
512 515 1.812922 GATGAGCTGGCTGTGGACG 60.813 63.158 0.00 0.00 0.00 4.79
513 516 2.230994 GATGAGCTGGCTGTGGACGA 62.231 60.000 0.00 0.00 0.00 4.20
514 517 2.433318 GAGCTGGCTGTGGACGAC 60.433 66.667 0.00 0.00 0.00 4.34
515 518 4.363990 AGCTGGCTGTGGACGACG 62.364 66.667 0.00 0.00 0.00 5.12
516 519 4.357947 GCTGGCTGTGGACGACGA 62.358 66.667 0.00 0.00 0.00 4.20
517 520 2.126307 CTGGCTGTGGACGACGAG 60.126 66.667 0.00 0.00 0.00 4.18
518 521 4.357947 TGGCTGTGGACGACGAGC 62.358 66.667 0.00 0.00 0.00 5.03
521 524 4.778415 CTGTGGACGACGAGCCCG 62.778 72.222 0.00 0.00 42.50 6.13
526 529 4.477975 GACGACGAGCCCGGAGTG 62.478 72.222 0.73 0.00 40.78 3.51
539 542 3.630289 GAGTGGGGTACGCCAGAT 58.370 61.111 30.32 21.84 42.25 2.90
540 543 1.442148 GAGTGGGGTACGCCAGATC 59.558 63.158 30.32 25.15 42.25 2.75
541 544 1.001760 AGTGGGGTACGCCAGATCT 59.998 57.895 30.32 20.95 42.25 2.75
542 545 1.144057 GTGGGGTACGCCAGATCTG 59.856 63.158 30.32 16.24 42.25 2.90
543 546 1.001120 TGGGGTACGCCAGATCTGA 59.999 57.895 26.58 3.09 42.25 3.27
544 547 1.043116 TGGGGTACGCCAGATCTGAG 61.043 60.000 26.58 18.55 42.25 3.35
545 548 1.742768 GGGTACGCCAGATCTGAGG 59.257 63.158 24.62 16.52 36.17 3.86
546 549 1.043673 GGGTACGCCAGATCTGAGGT 61.044 60.000 24.62 20.97 36.17 3.85
547 550 0.824759 GGTACGCCAGATCTGAGGTT 59.175 55.000 24.62 7.70 34.09 3.50
548 551 1.471676 GGTACGCCAGATCTGAGGTTG 60.472 57.143 24.62 7.90 34.09 3.77
549 552 0.175760 TACGCCAGATCTGAGGTTGC 59.824 55.000 24.62 16.42 0.00 4.17
550 553 1.817099 CGCCAGATCTGAGGTTGCC 60.817 63.158 24.62 2.92 0.00 4.52
551 554 1.817099 GCCAGATCTGAGGTTGCCG 60.817 63.158 24.62 5.66 0.00 5.69
552 555 1.900351 CCAGATCTGAGGTTGCCGA 59.100 57.895 24.62 0.00 0.00 5.54
553 556 0.460987 CCAGATCTGAGGTTGCCGAC 60.461 60.000 24.62 0.00 0.00 4.79
554 557 0.803768 CAGATCTGAGGTTGCCGACG 60.804 60.000 18.34 0.00 0.00 5.12
555 558 2.125512 ATCTGAGGTTGCCGACGC 60.126 61.111 0.00 0.00 0.00 5.19
556 559 3.665675 ATCTGAGGTTGCCGACGCC 62.666 63.158 0.00 0.00 0.00 5.68
584 587 4.760047 CCGTCGAGGGGCTGGTTG 62.760 72.222 16.51 0.00 35.97 3.77
585 588 4.760047 CGTCGAGGGGCTGGTTGG 62.760 72.222 0.00 0.00 0.00 3.77
586 589 3.637273 GTCGAGGGGCTGGTTGGT 61.637 66.667 0.00 0.00 0.00 3.67
587 590 3.636231 TCGAGGGGCTGGTTGGTG 61.636 66.667 0.00 0.00 0.00 4.17
588 591 4.722700 CGAGGGGCTGGTTGGTGG 62.723 72.222 0.00 0.00 0.00 4.61
589 592 4.366684 GAGGGGCTGGTTGGTGGG 62.367 72.222 0.00 0.00 0.00 4.61
592 595 4.994756 GGGCTGGTTGGTGGGGTG 62.995 72.222 0.00 0.00 0.00 4.61
593 596 4.994756 GGCTGGTTGGTGGGGTGG 62.995 72.222 0.00 0.00 0.00 4.61
594 597 4.994756 GCTGGTTGGTGGGGTGGG 62.995 72.222 0.00 0.00 0.00 4.61
595 598 3.182263 CTGGTTGGTGGGGTGGGA 61.182 66.667 0.00 0.00 0.00 4.37
596 599 3.182263 TGGTTGGTGGGGTGGGAG 61.182 66.667 0.00 0.00 0.00 4.30
597 600 3.979497 GGTTGGTGGGGTGGGAGG 61.979 72.222 0.00 0.00 0.00 4.30
598 601 3.979497 GTTGGTGGGGTGGGAGGG 61.979 72.222 0.00 0.00 0.00 4.30
611 614 4.821589 GAGGGGAGCACGGCGAAG 62.822 72.222 16.62 6.85 0.00 3.79
629 632 2.436646 CGCGAGGTGGAGCCATTT 60.437 61.111 0.00 0.00 40.61 2.32
630 633 2.040544 CGCGAGGTGGAGCCATTTT 61.041 57.895 0.00 0.00 40.61 1.82
631 634 1.508088 GCGAGGTGGAGCCATTTTG 59.492 57.895 0.00 0.00 40.61 2.44
632 635 1.508088 CGAGGTGGAGCCATTTTGC 59.492 57.895 0.00 0.00 40.61 3.68
633 636 1.243342 CGAGGTGGAGCCATTTTGCA 61.243 55.000 0.00 0.00 40.61 4.08
634 637 1.188863 GAGGTGGAGCCATTTTGCAT 58.811 50.000 0.00 0.00 40.61 3.96
635 638 1.551883 GAGGTGGAGCCATTTTGCATT 59.448 47.619 0.00 0.00 40.61 3.56
636 639 1.276989 AGGTGGAGCCATTTTGCATTG 59.723 47.619 0.00 0.00 40.61 2.82
637 640 1.081094 GTGGAGCCATTTTGCATTGC 58.919 50.000 0.46 0.46 0.00 3.56
638 641 0.390078 TGGAGCCATTTTGCATTGCG 60.390 50.000 3.84 0.00 0.00 4.85
639 642 1.085501 GGAGCCATTTTGCATTGCGG 61.086 55.000 3.84 0.00 0.00 5.69
640 643 0.390209 GAGCCATTTTGCATTGCGGT 60.390 50.000 3.84 0.00 0.00 5.68
641 644 0.671163 AGCCATTTTGCATTGCGGTG 60.671 50.000 3.84 0.32 0.00 4.94
642 645 1.789116 CCATTTTGCATTGCGGTGC 59.211 52.632 3.84 6.21 45.25 5.01
651 654 3.892740 ATTGCGGTGCACGTGGCTA 62.893 57.895 18.88 16.55 46.52 3.93
653 656 4.735132 GCGGTGCACGTGGCTAGA 62.735 66.667 18.88 0.00 46.52 2.43
654 657 2.184322 CGGTGCACGTGGCTAGAT 59.816 61.111 18.88 0.00 45.15 1.98
655 658 1.435925 CGGTGCACGTGGCTAGATA 59.564 57.895 18.88 0.00 45.15 1.98
656 659 0.870307 CGGTGCACGTGGCTAGATAC 60.870 60.000 18.88 3.62 45.15 2.24
657 660 0.870307 GGTGCACGTGGCTAGATACG 60.870 60.000 18.88 15.00 45.15 3.06
658 661 1.226859 TGCACGTGGCTAGATACGC 60.227 57.895 18.88 0.00 43.63 4.42
659 662 1.226859 GCACGTGGCTAGATACGCA 60.227 57.895 18.88 0.00 43.63 5.24
660 663 0.804544 GCACGTGGCTAGATACGCAA 60.805 55.000 18.88 0.00 43.63 4.85
661 664 1.852942 CACGTGGCTAGATACGCAAT 58.147 50.000 7.95 0.00 43.63 3.56
662 665 2.860971 GCACGTGGCTAGATACGCAATA 60.861 50.000 18.88 0.00 43.63 1.90
663 666 3.575630 CACGTGGCTAGATACGCAATAT 58.424 45.455 7.95 0.00 43.63 1.28
664 667 3.987868 CACGTGGCTAGATACGCAATATT 59.012 43.478 7.95 0.00 43.63 1.28
665 668 4.447724 CACGTGGCTAGATACGCAATATTT 59.552 41.667 7.95 0.00 43.63 1.40
666 669 5.631929 CACGTGGCTAGATACGCAATATTTA 59.368 40.000 7.95 0.00 43.63 1.40
667 670 5.632347 ACGTGGCTAGATACGCAATATTTAC 59.368 40.000 16.10 0.00 43.63 2.01
668 671 5.862323 CGTGGCTAGATACGCAATATTTACT 59.138 40.000 6.32 0.00 33.25 2.24
669 672 6.033619 CGTGGCTAGATACGCAATATTTACTC 59.966 42.308 6.32 0.00 33.25 2.59
670 673 7.091443 GTGGCTAGATACGCAATATTTACTCT 58.909 38.462 0.00 0.00 0.00 3.24
671 674 8.242053 GTGGCTAGATACGCAATATTTACTCTA 58.758 37.037 0.00 0.00 0.00 2.43
672 675 8.967918 TGGCTAGATACGCAATATTTACTCTAT 58.032 33.333 0.00 0.00 0.00 1.98
673 676 9.453325 GGCTAGATACGCAATATTTACTCTATC 57.547 37.037 0.00 0.00 0.00 2.08
679 682 9.982651 ATACGCAATATTTACTCTATCTGTTGT 57.017 29.630 0.00 0.00 0.00 3.32
680 683 8.718102 ACGCAATATTTACTCTATCTGTTGTT 57.282 30.769 0.00 0.00 0.00 2.83
681 684 8.818057 ACGCAATATTTACTCTATCTGTTGTTC 58.182 33.333 0.00 0.00 0.00 3.18
682 685 8.817100 CGCAATATTTACTCTATCTGTTGTTCA 58.183 33.333 0.00 0.00 0.00 3.18
690 693 7.865706 ACTCTATCTGTTGTTCAAACTTTGT 57.134 32.000 1.44 0.00 0.00 2.83
691 694 8.281212 ACTCTATCTGTTGTTCAAACTTTGTT 57.719 30.769 1.44 0.00 0.00 2.83
692 695 8.184192 ACTCTATCTGTTGTTCAAACTTTGTTG 58.816 33.333 1.44 0.00 0.00 3.33
693 696 6.972328 TCTATCTGTTGTTCAAACTTTGTTGC 59.028 34.615 1.44 0.00 0.00 4.17
694 697 3.917380 TCTGTTGTTCAAACTTTGTTGCG 59.083 39.130 1.44 0.00 0.00 4.85
695 698 3.643763 TGTTGTTCAAACTTTGTTGCGT 58.356 36.364 1.44 0.00 0.00 5.24
696 699 4.051922 TGTTGTTCAAACTTTGTTGCGTT 58.948 34.783 1.44 0.00 0.00 4.84
697 700 4.508124 TGTTGTTCAAACTTTGTTGCGTTT 59.492 33.333 1.44 0.00 33.92 3.60
698 701 4.894798 TGTTCAAACTTTGTTGCGTTTC 57.105 36.364 1.44 0.00 31.46 2.78
699 702 4.551388 TGTTCAAACTTTGTTGCGTTTCT 58.449 34.783 1.44 0.00 31.46 2.52
700 703 4.619336 TGTTCAAACTTTGTTGCGTTTCTC 59.381 37.500 1.44 0.00 31.46 2.87
701 704 4.427096 TCAAACTTTGTTGCGTTTCTCA 57.573 36.364 1.44 0.00 31.46 3.27
704 707 5.968848 TCAAACTTTGTTGCGTTTCTCATAC 59.031 36.000 1.44 0.00 31.46 2.39
843 847 1.767681 CTCTTCATCCTCTTCCCCTGG 59.232 57.143 0.00 0.00 0.00 4.45
846 850 1.695597 CATCCTCTTCCCCTGGCCT 60.696 63.158 3.32 0.00 0.00 5.19
848 852 3.415087 CCTCTTCCCCTGGCCTGG 61.415 72.222 21.51 21.51 0.00 4.45
849 853 4.120755 CTCTTCCCCTGGCCTGGC 62.121 72.222 22.93 11.05 0.00 4.85
892 896 2.317973 CATCTCCAGCTCTCCATCTCA 58.682 52.381 0.00 0.00 0.00 3.27
913 920 2.551459 ACAAGCTCAAGCATTCACAGTC 59.449 45.455 4.59 0.00 45.16 3.51
921 928 5.122519 TCAAGCATTCACAGTCTACAACAA 58.877 37.500 0.00 0.00 0.00 2.83
937 944 3.136763 CAACAATCCCCATCATCTCTCG 58.863 50.000 0.00 0.00 0.00 4.04
985 993 4.555348 AGTAGAATCTTACGAGCGAAGG 57.445 45.455 0.00 0.00 0.00 3.46
1188 1196 4.910585 GGGCGGGCGGACTACATG 62.911 72.222 0.00 0.00 0.00 3.21
1233 1250 3.948719 GTGGTGGCGGTGGAGGAA 61.949 66.667 0.00 0.00 0.00 3.36
1455 1518 2.129607 CGTGCGTGTACCTAGTTGTTT 58.870 47.619 0.00 0.00 0.00 2.83
1462 1525 5.565439 GCGTGTACCTAGTTGTTTCCTCTTA 60.565 44.000 0.00 0.00 0.00 2.10
1472 1535 2.500098 TGTTTCCTCTTACGATCTGGGG 59.500 50.000 0.00 0.00 0.00 4.96
1485 1549 3.708210 TGGGGATCACCAGTCGTC 58.292 61.111 14.36 0.00 42.91 4.20
1491 1555 1.546476 GGATCACCAGTCGTCTCTGTT 59.454 52.381 0.00 0.00 35.97 3.16
1493 1557 2.509052 TCACCAGTCGTCTCTGTTTG 57.491 50.000 0.00 0.00 34.02 2.93
1494 1558 1.754803 TCACCAGTCGTCTCTGTTTGT 59.245 47.619 0.00 0.00 34.02 2.83
1495 1559 2.953648 TCACCAGTCGTCTCTGTTTGTA 59.046 45.455 0.00 0.00 34.02 2.41
1496 1560 3.004419 TCACCAGTCGTCTCTGTTTGTAG 59.996 47.826 0.00 0.00 34.02 2.74
1497 1561 2.288273 ACCAGTCGTCTCTGTTTGTAGC 60.288 50.000 0.00 0.00 34.02 3.58
1498 1562 2.029828 CCAGTCGTCTCTGTTTGTAGCT 60.030 50.000 0.00 0.00 34.02 3.32
1499 1563 2.983136 CAGTCGTCTCTGTTTGTAGCTG 59.017 50.000 0.00 0.00 0.00 4.24
1500 1564 2.623889 AGTCGTCTCTGTTTGTAGCTGT 59.376 45.455 0.00 0.00 0.00 4.40
1501 1565 3.068307 AGTCGTCTCTGTTTGTAGCTGTT 59.932 43.478 0.00 0.00 0.00 3.16
1502 1566 3.182572 GTCGTCTCTGTTTGTAGCTGTTG 59.817 47.826 0.00 0.00 0.00 3.33
1503 1567 3.123804 CGTCTCTGTTTGTAGCTGTTGT 58.876 45.455 0.00 0.00 0.00 3.32
1504 1568 3.060272 CGTCTCTGTTTGTAGCTGTTGTG 60.060 47.826 0.00 0.00 0.00 3.33
1505 1569 4.119862 GTCTCTGTTTGTAGCTGTTGTGA 58.880 43.478 0.00 0.00 0.00 3.58
1506 1570 4.025647 GTCTCTGTTTGTAGCTGTTGTGAC 60.026 45.833 0.00 0.00 0.00 3.67
1507 1571 2.863740 TCTGTTTGTAGCTGTTGTGACG 59.136 45.455 0.00 0.00 0.00 4.35
1508 1572 1.937223 TGTTTGTAGCTGTTGTGACGG 59.063 47.619 0.00 0.00 35.15 4.79
1509 1573 2.206750 GTTTGTAGCTGTTGTGACGGA 58.793 47.619 0.00 0.00 33.82 4.69
1510 1574 2.148916 TTGTAGCTGTTGTGACGGAG 57.851 50.000 0.00 0.00 33.82 4.63
1533 1597 1.314730 CTTAGAGGAGAGAGGTCGGC 58.685 60.000 0.00 0.00 0.00 5.54
1628 1709 3.364549 TCAATCTGATTCCCCGCATTTT 58.635 40.909 0.00 0.00 0.00 1.82
1637 1720 3.859411 TCCCCGCATTTTGTAACATTC 57.141 42.857 0.00 0.00 0.00 2.67
1644 1727 4.359706 GCATTTTGTAACATTCGGGATCC 58.640 43.478 1.92 1.92 0.00 3.36
1657 1740 1.742411 CGGGATCCGCAGTTAACATGT 60.742 52.381 8.61 0.00 41.17 3.21
1691 1774 2.932614 GTGATACTTGTGCTGGTAGCTG 59.067 50.000 0.00 0.00 42.97 4.24
1728 1845 6.595682 ACACCGATTAATTCTGGATCTGAAT 58.404 36.000 8.74 8.11 34.38 2.57
1735 1865 9.784531 GATTAATTCTGGATCTGAATACTCCAA 57.215 33.333 12.45 5.72 38.55 3.53
1763 1899 4.284490 TCTTCTCCTCAACAACTAGCATGT 59.716 41.667 0.00 0.00 0.00 3.21
1776 1912 8.615878 ACAACTAGCATGTTTCTGTGTTATTA 57.384 30.769 0.00 0.00 0.00 0.98
1798 1934 2.229784 GCCCTAACATTATGATGCAGCC 59.770 50.000 0.00 0.00 36.72 4.85
1816 1957 5.996513 TGCAGCCATAAATCAAAAACATTGT 59.003 32.000 0.00 0.00 0.00 2.71
1817 1958 7.157347 TGCAGCCATAAATCAAAAACATTGTA 58.843 30.769 0.00 0.00 0.00 2.41
1818 1959 7.658982 TGCAGCCATAAATCAAAAACATTGTAA 59.341 29.630 0.00 0.00 0.00 2.41
1819 1960 8.170553 GCAGCCATAAATCAAAAACATTGTAAG 58.829 33.333 0.00 0.00 0.00 2.34
1878 2023 0.387565 ATTGTGTTCGGTTGGGTTGC 59.612 50.000 0.00 0.00 0.00 4.17
1886 2031 2.113562 GTTGGGTTGCGGTGGGTA 59.886 61.111 0.00 0.00 0.00 3.69
1937 2089 8.318876 CCTCGCTTGCGTTACATTATATTATAC 58.681 37.037 14.70 0.00 0.00 1.47
1938 2090 8.975410 TCGCTTGCGTTACATTATATTATACT 57.025 30.769 14.70 0.00 0.00 2.12
1991 2143 9.745018 ATATTATACTCCCTTCATTCCACAATG 57.255 33.333 0.00 0.00 40.91 2.82
1992 2144 3.814504 ACTCCCTTCATTCCACAATGT 57.185 42.857 0.00 0.00 40.47 2.71
1993 2145 4.927267 ACTCCCTTCATTCCACAATGTA 57.073 40.909 0.00 0.00 40.47 2.29
1994 2146 4.848357 ACTCCCTTCATTCCACAATGTAG 58.152 43.478 0.00 0.00 40.47 2.74
1995 2147 4.289672 ACTCCCTTCATTCCACAATGTAGT 59.710 41.667 0.00 0.00 40.47 2.73
1996 2148 4.588899 TCCCTTCATTCCACAATGTAGTG 58.411 43.478 0.00 0.00 40.47 2.74
1997 2149 3.129287 CCCTTCATTCCACAATGTAGTGC 59.871 47.826 0.00 0.00 40.47 4.40
1998 2150 3.129287 CCTTCATTCCACAATGTAGTGCC 59.871 47.826 0.00 0.00 40.47 5.01
1999 2151 3.719268 TCATTCCACAATGTAGTGCCT 57.281 42.857 0.00 0.00 40.47 4.75
2000 2152 4.835284 TCATTCCACAATGTAGTGCCTA 57.165 40.909 0.00 0.00 40.47 3.93
2001 2153 5.372343 TCATTCCACAATGTAGTGCCTAT 57.628 39.130 0.00 0.00 40.47 2.57
2002 2154 6.493189 TCATTCCACAATGTAGTGCCTATA 57.507 37.500 0.00 0.00 40.47 1.31
2003 2155 6.524734 TCATTCCACAATGTAGTGCCTATAG 58.475 40.000 0.00 0.00 40.47 1.31
2004 2156 6.326323 TCATTCCACAATGTAGTGCCTATAGA 59.674 38.462 0.00 0.00 40.47 1.98
2005 2157 6.747414 TTCCACAATGTAGTGCCTATAGAT 57.253 37.500 0.00 0.00 38.18 1.98
2006 2158 6.747414 TCCACAATGTAGTGCCTATAGATT 57.253 37.500 0.00 0.00 38.18 2.40
2007 2159 7.136822 TCCACAATGTAGTGCCTATAGATTT 57.863 36.000 0.00 0.00 38.18 2.17
2008 2160 7.573710 TCCACAATGTAGTGCCTATAGATTTT 58.426 34.615 0.00 0.00 38.18 1.82
2009 2161 8.052748 TCCACAATGTAGTGCCTATAGATTTTT 58.947 33.333 0.00 0.00 38.18 1.94
2030 2182 6.463995 TTTTGAAGTCAAACTATGCCAACT 57.536 33.333 5.98 0.00 44.56 3.16
2031 2183 6.463995 TTTGAAGTCAAACTATGCCAACTT 57.536 33.333 2.32 0.00 40.55 2.66
2032 2184 6.463995 TTGAAGTCAAACTATGCCAACTTT 57.536 33.333 0.00 0.00 32.11 2.66
2033 2185 5.830912 TGAAGTCAAACTATGCCAACTTTG 58.169 37.500 0.00 0.00 0.00 2.77
2034 2186 5.592282 TGAAGTCAAACTATGCCAACTTTGA 59.408 36.000 0.00 0.00 31.68 2.69
2035 2187 5.438761 AGTCAAACTATGCCAACTTTGAC 57.561 39.130 12.19 12.19 46.84 3.18
2036 2188 5.181690 GTCAAACTATGCCAACTTTGACA 57.818 39.130 14.32 0.00 46.21 3.58
2037 2189 5.587289 GTCAAACTATGCCAACTTTGACAA 58.413 37.500 14.32 0.00 46.21 3.18
2038 2190 6.215845 GTCAAACTATGCCAACTTTGACAAT 58.784 36.000 14.32 0.00 46.21 2.71
2039 2191 6.701400 GTCAAACTATGCCAACTTTGACAATT 59.299 34.615 14.32 0.00 46.21 2.32
2040 2192 6.700960 TCAAACTATGCCAACTTTGACAATTG 59.299 34.615 3.24 3.24 29.66 2.32
2041 2193 5.789643 ACTATGCCAACTTTGACAATTGT 57.210 34.783 11.78 11.78 0.00 2.71
2042 2194 6.892658 ACTATGCCAACTTTGACAATTGTA 57.107 33.333 11.95 0.00 0.00 2.41
2043 2195 7.466746 ACTATGCCAACTTTGACAATTGTAT 57.533 32.000 11.95 0.00 0.00 2.29
2044 2196 8.574251 ACTATGCCAACTTTGACAATTGTATA 57.426 30.769 11.95 0.57 0.00 1.47
2045 2197 9.019656 ACTATGCCAACTTTGACAATTGTATAA 57.980 29.630 11.95 7.34 0.00 0.98
2046 2198 9.853555 CTATGCCAACTTTGACAATTGTATAAA 57.146 29.630 11.95 14.31 0.00 1.40
2047 2199 8.761575 ATGCCAACTTTGACAATTGTATAAAG 57.238 30.769 28.64 28.64 37.84 1.85
2048 2200 7.946207 TGCCAACTTTGACAATTGTATAAAGA 58.054 30.769 32.91 19.19 36.56 2.52
2049 2201 8.417106 TGCCAACTTTGACAATTGTATAAAGAA 58.583 29.630 32.91 19.51 36.56 2.52
2050 2202 9.255304 GCCAACTTTGACAATTGTATAAAGAAA 57.745 29.630 32.91 17.55 36.56 2.52
2078 2230 9.476928 ACTGTCTACATCTACAATACTAAACCT 57.523 33.333 0.00 0.00 0.00 3.50
2079 2231 9.737427 CTGTCTACATCTACAATACTAAACCTG 57.263 37.037 0.00 0.00 0.00 4.00
2080 2232 9.251440 TGTCTACATCTACAATACTAAACCTGT 57.749 33.333 0.00 0.00 0.00 4.00
2121 2273 6.967135 ACTCATGATGTATTCAATGATGTGC 58.033 36.000 0.00 0.00 38.03 4.57
2122 2274 6.544564 ACTCATGATGTATTCAATGATGTGCA 59.455 34.615 0.00 0.00 38.03 4.57
2123 2275 7.230712 ACTCATGATGTATTCAATGATGTGCAT 59.769 33.333 0.00 0.87 38.03 3.96
2125 2277 8.417884 TCATGATGTATTCAATGATGTGCATTT 58.582 29.630 0.00 0.00 44.68 2.32
2126 2278 7.995463 TGATGTATTCAATGATGTGCATTTG 57.005 32.000 0.00 0.00 44.68 2.32
2127 2279 6.981559 TGATGTATTCAATGATGTGCATTTGG 59.018 34.615 0.00 0.00 44.68 3.28
2128 2280 6.283544 TGTATTCAATGATGTGCATTTGGT 57.716 33.333 0.00 0.00 44.68 3.67
2129 2281 7.401955 TGTATTCAATGATGTGCATTTGGTA 57.598 32.000 0.00 0.00 44.68 3.25
2130 2282 8.009622 TGTATTCAATGATGTGCATTTGGTAT 57.990 30.769 0.00 0.00 44.68 2.73
2131 2283 8.476447 TGTATTCAATGATGTGCATTTGGTATT 58.524 29.630 0.00 0.00 44.68 1.89
2132 2284 9.316730 GTATTCAATGATGTGCATTTGGTATTT 57.683 29.630 0.00 0.00 44.68 1.40
2134 2286 8.929827 TTCAATGATGTGCATTTGGTATTTAG 57.070 30.769 0.00 0.00 44.68 1.85
2135 2287 8.291191 TCAATGATGTGCATTTGGTATTTAGA 57.709 30.769 0.00 0.00 44.68 2.10
2136 2288 8.916062 TCAATGATGTGCATTTGGTATTTAGAT 58.084 29.630 0.00 0.00 44.68 1.98
2137 2289 8.974408 CAATGATGTGCATTTGGTATTTAGATG 58.026 33.333 0.00 0.00 44.68 2.90
2138 2290 7.643569 TGATGTGCATTTGGTATTTAGATGT 57.356 32.000 0.00 0.00 0.00 3.06
2139 2291 8.744568 TGATGTGCATTTGGTATTTAGATGTA 57.255 30.769 0.00 0.00 0.00 2.29
2140 2292 8.620416 TGATGTGCATTTGGTATTTAGATGTAC 58.380 33.333 0.00 0.00 35.02 2.90
2141 2293 7.328277 TGTGCATTTGGTATTTAGATGTACC 57.672 36.000 0.00 0.00 40.60 3.34
2142 2294 7.116075 TGTGCATTTGGTATTTAGATGTACCT 58.884 34.615 0.00 0.00 40.78 3.08
2143 2295 8.268605 TGTGCATTTGGTATTTAGATGTACCTA 58.731 33.333 0.00 0.00 40.78 3.08
2144 2296 8.557029 GTGCATTTGGTATTTAGATGTACCTAC 58.443 37.037 0.00 0.00 40.78 3.18
2145 2297 8.491134 TGCATTTGGTATTTAGATGTACCTACT 58.509 33.333 3.54 0.00 40.78 2.57
2146 2298 9.338622 GCATTTGGTATTTAGATGTACCTACTT 57.661 33.333 3.54 0.00 40.78 2.24
2204 2356 9.988815 TTTAACTTTTGCAAAAATCTATAGGCA 57.011 25.926 23.92 0.00 0.00 4.75
2205 2357 7.889589 AACTTTTGCAAAAATCTATAGGCAC 57.110 32.000 23.92 0.00 0.00 5.01
2206 2358 7.232118 ACTTTTGCAAAAATCTATAGGCACT 57.768 32.000 23.92 0.00 46.37 4.40
2222 2374 5.455056 AGGCACTATATTACGGAACTGAG 57.545 43.478 0.00 0.00 36.02 3.35
2223 2375 4.281182 AGGCACTATATTACGGAACTGAGG 59.719 45.833 0.00 0.00 36.02 3.86
2224 2376 4.557205 GCACTATATTACGGAACTGAGGG 58.443 47.826 0.00 0.00 0.00 4.30
2225 2377 4.280174 GCACTATATTACGGAACTGAGGGA 59.720 45.833 0.00 0.00 0.00 4.20
2226 2378 5.565045 GCACTATATTACGGAACTGAGGGAG 60.565 48.000 0.00 0.00 0.00 4.30
2227 2379 5.535406 CACTATATTACGGAACTGAGGGAGT 59.465 44.000 0.00 0.00 35.94 3.85
2228 2380 6.713903 CACTATATTACGGAACTGAGGGAGTA 59.286 42.308 0.00 0.00 33.09 2.59
2229 2381 6.941436 ACTATATTACGGAACTGAGGGAGTAG 59.059 42.308 0.00 0.00 33.09 2.57
2230 2382 3.446442 TTACGGAACTGAGGGAGTAGT 57.554 47.619 0.00 0.00 33.09 2.73
2231 2383 2.305858 ACGGAACTGAGGGAGTAGTT 57.694 50.000 0.00 0.00 39.67 2.24
2239 2391 6.723298 AACTGAGGGAGTAGTTCATCATAG 57.277 41.667 0.00 0.00 31.88 2.23
2240 2392 5.772004 ACTGAGGGAGTAGTTCATCATAGT 58.228 41.667 0.00 0.00 30.86 2.12
2241 2393 6.198639 ACTGAGGGAGTAGTTCATCATAGTT 58.801 40.000 0.00 0.00 30.86 2.24
2242 2394 6.322712 ACTGAGGGAGTAGTTCATCATAGTTC 59.677 42.308 0.00 0.00 30.86 3.01
2243 2395 6.194967 TGAGGGAGTAGTTCATCATAGTTCA 58.805 40.000 0.00 0.00 0.00 3.18
2244 2396 6.841229 TGAGGGAGTAGTTCATCATAGTTCAT 59.159 38.462 0.00 0.00 0.00 2.57
2245 2397 7.345653 TGAGGGAGTAGTTCATCATAGTTCATT 59.654 37.037 0.00 0.00 0.00 2.57
2246 2398 8.783660 AGGGAGTAGTTCATCATAGTTCATTA 57.216 34.615 0.00 0.00 0.00 1.90
2247 2399 8.865090 AGGGAGTAGTTCATCATAGTTCATTAG 58.135 37.037 0.00 0.00 0.00 1.73
2248 2400 8.643324 GGGAGTAGTTCATCATAGTTCATTAGT 58.357 37.037 0.00 0.00 0.00 2.24
2252 2404 9.922305 GTAGTTCATCATAGTTCATTAGTTTGC 57.078 33.333 0.00 0.00 0.00 3.68
2253 2405 8.798859 AGTTCATCATAGTTCATTAGTTTGCT 57.201 30.769 0.00 0.00 0.00 3.91
2254 2406 8.887717 AGTTCATCATAGTTCATTAGTTTGCTC 58.112 33.333 0.00 0.00 0.00 4.26
2255 2407 8.887717 GTTCATCATAGTTCATTAGTTTGCTCT 58.112 33.333 0.00 0.00 0.00 4.09
2256 2408 9.453572 TTCATCATAGTTCATTAGTTTGCTCTT 57.546 29.630 0.00 0.00 0.00 2.85
2259 2411 9.890629 ATCATAGTTCATTAGTTTGCTCTTACA 57.109 29.630 0.00 0.00 0.00 2.41
2260 2412 9.890629 TCATAGTTCATTAGTTTGCTCTTACAT 57.109 29.630 0.00 0.00 0.00 2.29
2265 2417 9.722056 GTTCATTAGTTTGCTCTTACATTATGG 57.278 33.333 0.00 0.00 0.00 2.74
2266 2418 7.930217 TCATTAGTTTGCTCTTACATTATGGC 58.070 34.615 0.00 0.00 0.00 4.40
2267 2419 4.882671 AGTTTGCTCTTACATTATGGCG 57.117 40.909 0.00 0.00 0.00 5.69
2268 2420 3.627577 AGTTTGCTCTTACATTATGGCGG 59.372 43.478 0.00 0.00 0.00 6.13
2269 2421 3.275617 TTGCTCTTACATTATGGCGGT 57.724 42.857 0.00 0.00 0.00 5.68
2270 2422 2.560504 TGCTCTTACATTATGGCGGTG 58.439 47.619 0.00 0.00 0.00 4.94
2271 2423 1.873591 GCTCTTACATTATGGCGGTGG 59.126 52.381 0.00 0.00 0.00 4.61
2272 2424 2.745152 GCTCTTACATTATGGCGGTGGT 60.745 50.000 0.00 0.00 0.00 4.16
2273 2425 2.872245 CTCTTACATTATGGCGGTGGTG 59.128 50.000 0.00 0.00 0.00 4.17
2274 2426 1.946768 CTTACATTATGGCGGTGGTGG 59.053 52.381 0.00 0.00 0.00 4.61
2275 2427 1.205055 TACATTATGGCGGTGGTGGA 58.795 50.000 0.00 0.00 0.00 4.02
2276 2428 0.107214 ACATTATGGCGGTGGTGGAG 60.107 55.000 0.00 0.00 0.00 3.86
2277 2429 0.107214 CATTATGGCGGTGGTGGAGT 60.107 55.000 0.00 0.00 0.00 3.85
2278 2430 1.140052 CATTATGGCGGTGGTGGAGTA 59.860 52.381 0.00 0.00 0.00 2.59
2279 2431 0.538118 TTATGGCGGTGGTGGAGTAC 59.462 55.000 0.00 0.00 0.00 2.73
2280 2432 0.324923 TATGGCGGTGGTGGAGTACT 60.325 55.000 0.00 0.00 0.00 2.73
2281 2433 0.324923 ATGGCGGTGGTGGAGTACTA 60.325 55.000 0.00 0.00 0.00 1.82
2323 2475 0.618458 ACCCACCATGATACGCAACT 59.382 50.000 0.00 0.00 0.00 3.16
2324 2476 1.834896 ACCCACCATGATACGCAACTA 59.165 47.619 0.00 0.00 0.00 2.24
2325 2477 2.210116 CCCACCATGATACGCAACTAC 58.790 52.381 0.00 0.00 0.00 2.73
2326 2478 2.419436 CCCACCATGATACGCAACTACA 60.419 50.000 0.00 0.00 0.00 2.74
2327 2479 2.866156 CCACCATGATACGCAACTACAG 59.134 50.000 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.202518 CGCAGCAATTGAAGGCCG 60.203 61.111 10.34 0.00 0.00 6.13
111 113 3.039588 GCAAGTCGTTCGCCCGAA 61.040 61.111 0.00 0.00 38.80 4.30
115 117 1.134694 GAATGGCAAGTCGTTCGCC 59.865 57.895 0.00 0.00 46.43 5.54
191 193 1.511850 CCTCGTGCATTCACTTCACA 58.488 50.000 0.00 0.00 40.99 3.58
193 195 0.955428 GCCCTCGTGCATTCACTTCA 60.955 55.000 0.00 0.00 40.99 3.02
195 197 1.675641 GGCCCTCGTGCATTCACTT 60.676 57.895 0.00 0.00 40.99 3.16
197 199 3.499737 CGGCCCTCGTGCATTCAC 61.500 66.667 0.00 0.00 39.78 3.18
206 208 0.884704 CATTTATCCCACGGCCCTCG 60.885 60.000 0.00 0.00 45.88 4.63
208 210 1.152756 GCATTTATCCCACGGCCCT 60.153 57.895 0.00 0.00 0.00 5.19
209 211 2.551912 CGCATTTATCCCACGGCCC 61.552 63.158 0.00 0.00 0.00 5.80
214 216 2.154462 CATCCTCCGCATTTATCCCAC 58.846 52.381 0.00 0.00 0.00 4.61
215 217 1.073763 CCATCCTCCGCATTTATCCCA 59.926 52.381 0.00 0.00 0.00 4.37
303 305 4.947147 TGACAACCGGTGCCTGCC 62.947 66.667 8.52 0.00 0.00 4.85
310 312 1.367840 GCTCTCTGTGACAACCGGT 59.632 57.895 0.00 0.00 0.00 5.28
316 318 2.048784 GCGCTGCTCTCTGTGACA 60.049 61.111 0.00 0.00 0.00 3.58
317 319 3.177920 CGCGCTGCTCTCTGTGAC 61.178 66.667 5.56 0.00 0.00 3.67
318 320 4.426112 CCGCGCTGCTCTCTGTGA 62.426 66.667 5.56 0.00 0.00 3.58
320 322 4.427661 GTCCGCGCTGCTCTCTGT 62.428 66.667 5.56 0.00 0.00 3.41
339 341 4.421479 CGAGTCGCTTGACCCGCT 62.421 66.667 0.00 0.00 43.97 5.52
371 374 3.251509 TGAGGCTGCTGCTTGGGA 61.252 61.111 15.64 0.00 39.59 4.37
375 378 0.179009 TTCAAGTGAGGCTGCTGCTT 60.179 50.000 15.64 7.86 39.59 3.91
485 488 3.554342 CAGCTCATCCCCCTCCGG 61.554 72.222 0.00 0.00 0.00 5.14
486 489 3.554342 CCAGCTCATCCCCCTCCG 61.554 72.222 0.00 0.00 0.00 4.63
487 490 3.883549 GCCAGCTCATCCCCCTCC 61.884 72.222 0.00 0.00 0.00 4.30
488 491 2.771762 AGCCAGCTCATCCCCCTC 60.772 66.667 0.00 0.00 0.00 4.30
489 492 3.095163 CAGCCAGCTCATCCCCCT 61.095 66.667 0.00 0.00 0.00 4.79
490 493 3.415087 ACAGCCAGCTCATCCCCC 61.415 66.667 0.00 0.00 0.00 5.40
491 494 2.124403 CACAGCCAGCTCATCCCC 60.124 66.667 0.00 0.00 0.00 4.81
492 495 2.124403 CCACAGCCAGCTCATCCC 60.124 66.667 0.00 0.00 0.00 3.85
493 496 1.451028 GTCCACAGCCAGCTCATCC 60.451 63.158 0.00 0.00 0.00 3.51
494 497 1.812922 CGTCCACAGCCAGCTCATC 60.813 63.158 0.00 0.00 0.00 2.92
495 498 2.267006 CGTCCACAGCCAGCTCAT 59.733 61.111 0.00 0.00 0.00 2.90
496 499 2.917227 TCGTCCACAGCCAGCTCA 60.917 61.111 0.00 0.00 0.00 4.26
497 500 2.433318 GTCGTCCACAGCCAGCTC 60.433 66.667 0.00 0.00 0.00 4.09
498 501 4.363990 CGTCGTCCACAGCCAGCT 62.364 66.667 0.00 0.00 0.00 4.24
499 502 4.357947 TCGTCGTCCACAGCCAGC 62.358 66.667 0.00 0.00 0.00 4.85
500 503 2.126307 CTCGTCGTCCACAGCCAG 60.126 66.667 0.00 0.00 0.00 4.85
501 504 4.357947 GCTCGTCGTCCACAGCCA 62.358 66.667 0.00 0.00 0.00 4.75
504 507 4.778415 CGGGCTCGTCGTCCACAG 62.778 72.222 0.00 0.00 37.17 3.66
509 512 4.477975 CACTCCGGGCTCGTCGTC 62.478 72.222 4.71 0.00 33.95 4.20
520 523 4.143333 CTGGCGTACCCCACTCCG 62.143 72.222 0.00 0.00 34.49 4.63
521 524 2.029307 GATCTGGCGTACCCCACTCC 62.029 65.000 0.00 0.00 33.59 3.85
522 525 1.043673 AGATCTGGCGTACCCCACTC 61.044 60.000 0.00 0.00 33.59 3.51
523 526 1.001760 AGATCTGGCGTACCCCACT 59.998 57.895 0.00 0.00 33.59 4.00
524 527 1.144057 CAGATCTGGCGTACCCCAC 59.856 63.158 15.38 0.00 33.59 4.61
525 528 1.001120 TCAGATCTGGCGTACCCCA 59.999 57.895 22.42 0.00 33.59 4.96
526 529 1.742768 CTCAGATCTGGCGTACCCC 59.257 63.158 22.42 0.00 33.59 4.95
527 530 1.043673 ACCTCAGATCTGGCGTACCC 61.044 60.000 22.42 0.00 33.59 3.69
528 531 0.824759 AACCTCAGATCTGGCGTACC 59.175 55.000 22.42 0.00 0.00 3.34
529 532 1.927895 CAACCTCAGATCTGGCGTAC 58.072 55.000 22.42 0.00 0.00 3.67
530 533 0.175760 GCAACCTCAGATCTGGCGTA 59.824 55.000 22.42 2.18 0.00 4.42
531 534 1.078848 GCAACCTCAGATCTGGCGT 60.079 57.895 22.42 15.10 0.00 5.68
532 535 1.817099 GGCAACCTCAGATCTGGCG 60.817 63.158 22.42 14.47 0.00 5.69
533 536 1.817099 CGGCAACCTCAGATCTGGC 60.817 63.158 22.42 16.30 0.00 4.85
534 537 0.460987 GTCGGCAACCTCAGATCTGG 60.461 60.000 22.42 10.18 0.00 3.86
535 538 0.803768 CGTCGGCAACCTCAGATCTG 60.804 60.000 17.07 17.07 0.00 2.90
536 539 1.513158 CGTCGGCAACCTCAGATCT 59.487 57.895 0.00 0.00 0.00 2.75
537 540 2.167861 GCGTCGGCAACCTCAGATC 61.168 63.158 0.00 0.00 39.62 2.75
538 541 2.125512 GCGTCGGCAACCTCAGAT 60.126 61.111 0.00 0.00 39.62 2.90
539 542 4.373116 GGCGTCGGCAACCTCAGA 62.373 66.667 14.73 0.00 42.47 3.27
567 570 4.760047 CAACCAGCCCCTCGACGG 62.760 72.222 0.00 0.00 0.00 4.79
568 571 4.760047 CCAACCAGCCCCTCGACG 62.760 72.222 0.00 0.00 0.00 5.12
569 572 3.637273 ACCAACCAGCCCCTCGAC 61.637 66.667 0.00 0.00 0.00 4.20
570 573 3.636231 CACCAACCAGCCCCTCGA 61.636 66.667 0.00 0.00 0.00 4.04
571 574 4.722700 CCACCAACCAGCCCCTCG 62.723 72.222 0.00 0.00 0.00 4.63
572 575 4.366684 CCCACCAACCAGCCCCTC 62.367 72.222 0.00 0.00 0.00 4.30
575 578 4.994756 CACCCCACCAACCAGCCC 62.995 72.222 0.00 0.00 0.00 5.19
576 579 4.994756 CCACCCCACCAACCAGCC 62.995 72.222 0.00 0.00 0.00 4.85
577 580 4.994756 CCCACCCCACCAACCAGC 62.995 72.222 0.00 0.00 0.00 4.85
578 581 3.182263 TCCCACCCCACCAACCAG 61.182 66.667 0.00 0.00 0.00 4.00
579 582 3.182263 CTCCCACCCCACCAACCA 61.182 66.667 0.00 0.00 0.00 3.67
580 583 3.979497 CCTCCCACCCCACCAACC 61.979 72.222 0.00 0.00 0.00 3.77
581 584 3.979497 CCCTCCCACCCCACCAAC 61.979 72.222 0.00 0.00 0.00 3.77
594 597 4.821589 CTTCGCCGTGCTCCCCTC 62.822 72.222 0.00 0.00 0.00 4.30
612 615 2.040544 AAAATGGCTCCACCTCGCG 61.041 57.895 0.00 0.00 40.22 5.87
613 616 1.508088 CAAAATGGCTCCACCTCGC 59.492 57.895 0.00 0.00 40.22 5.03
614 617 1.243342 TGCAAAATGGCTCCACCTCG 61.243 55.000 0.00 0.00 40.22 4.63
615 618 1.188863 ATGCAAAATGGCTCCACCTC 58.811 50.000 0.00 0.00 40.22 3.85
616 619 1.276989 CAATGCAAAATGGCTCCACCT 59.723 47.619 0.00 0.00 40.22 4.00
617 620 1.729284 CAATGCAAAATGGCTCCACC 58.271 50.000 0.00 0.00 39.84 4.61
618 621 1.081094 GCAATGCAAAATGGCTCCAC 58.919 50.000 0.00 0.00 34.04 4.02
619 622 0.390078 CGCAATGCAAAATGGCTCCA 60.390 50.000 5.91 0.00 34.04 3.86
620 623 1.085501 CCGCAATGCAAAATGGCTCC 61.086 55.000 5.91 0.00 34.04 4.70
621 624 0.390209 ACCGCAATGCAAAATGGCTC 60.390 50.000 5.91 0.00 34.04 4.70
622 625 0.671163 CACCGCAATGCAAAATGGCT 60.671 50.000 5.91 0.00 34.04 4.75
623 626 1.789116 CACCGCAATGCAAAATGGC 59.211 52.632 5.91 0.00 0.00 4.40
624 627 1.789116 GCACCGCAATGCAAAATGG 59.211 52.632 5.91 0.00 45.39 3.16
633 636 3.892740 TAGCCACGTGCACCGCAAT 62.893 57.895 10.91 0.00 41.47 3.56
634 637 4.610714 TAGCCACGTGCACCGCAA 62.611 61.111 10.91 0.00 41.47 4.85
636 639 2.622903 TATCTAGCCACGTGCACCGC 62.623 60.000 10.91 10.64 44.83 5.68
637 640 0.870307 GTATCTAGCCACGTGCACCG 60.870 60.000 10.91 9.19 44.83 4.94
638 641 0.870307 CGTATCTAGCCACGTGCACC 60.870 60.000 10.91 0.08 44.83 5.01
639 642 1.480219 GCGTATCTAGCCACGTGCAC 61.480 60.000 10.91 6.82 44.83 4.57
640 643 1.226859 GCGTATCTAGCCACGTGCA 60.227 57.895 10.91 0.00 44.83 4.57
641 644 0.804544 TTGCGTATCTAGCCACGTGC 60.805 55.000 10.91 5.91 40.25 5.34
642 645 1.852942 ATTGCGTATCTAGCCACGTG 58.147 50.000 9.08 9.08 40.25 4.49
643 646 3.936372 ATATTGCGTATCTAGCCACGT 57.064 42.857 14.71 0.00 40.25 4.49
644 647 5.862323 AGTAAATATTGCGTATCTAGCCACG 59.138 40.000 10.52 10.52 41.04 4.94
645 648 7.091443 AGAGTAAATATTGCGTATCTAGCCAC 58.909 38.462 0.00 0.00 0.00 5.01
646 649 7.228314 AGAGTAAATATTGCGTATCTAGCCA 57.772 36.000 0.00 0.00 0.00 4.75
647 650 9.453325 GATAGAGTAAATATTGCGTATCTAGCC 57.547 37.037 0.00 0.00 0.00 3.93
653 656 9.982651 ACAACAGATAGAGTAAATATTGCGTAT 57.017 29.630 0.00 0.00 0.00 3.06
654 657 9.811995 AACAACAGATAGAGTAAATATTGCGTA 57.188 29.630 0.00 0.00 0.00 4.42
655 658 8.718102 AACAACAGATAGAGTAAATATTGCGT 57.282 30.769 0.00 0.00 0.00 5.24
656 659 8.817100 TGAACAACAGATAGAGTAAATATTGCG 58.183 33.333 0.00 0.00 0.00 4.85
664 667 9.391006 ACAAAGTTTGAACAACAGATAGAGTAA 57.609 29.630 22.23 0.00 0.00 2.24
665 668 8.958119 ACAAAGTTTGAACAACAGATAGAGTA 57.042 30.769 22.23 0.00 0.00 2.59
666 669 7.865706 ACAAAGTTTGAACAACAGATAGAGT 57.134 32.000 22.23 0.00 0.00 3.24
667 670 7.166473 GCAACAAAGTTTGAACAACAGATAGAG 59.834 37.037 22.23 0.00 0.00 2.43
668 671 6.972328 GCAACAAAGTTTGAACAACAGATAGA 59.028 34.615 22.23 0.00 0.00 1.98
669 672 6.075415 CGCAACAAAGTTTGAACAACAGATAG 60.075 38.462 22.23 0.00 0.00 2.08
670 673 5.741510 CGCAACAAAGTTTGAACAACAGATA 59.258 36.000 22.23 0.00 0.00 1.98
671 674 4.562394 CGCAACAAAGTTTGAACAACAGAT 59.438 37.500 22.23 0.00 0.00 2.90
672 675 3.917380 CGCAACAAAGTTTGAACAACAGA 59.083 39.130 22.23 0.00 0.00 3.41
673 676 3.672867 ACGCAACAAAGTTTGAACAACAG 59.327 39.130 22.23 8.60 0.00 3.16
674 677 3.643763 ACGCAACAAAGTTTGAACAACA 58.356 36.364 22.23 0.00 0.00 3.33
675 678 4.639189 AACGCAACAAAGTTTGAACAAC 57.361 36.364 22.23 5.84 0.00 3.32
676 679 4.985409 AGAAACGCAACAAAGTTTGAACAA 59.015 33.333 22.23 0.00 40.24 2.83
677 680 4.551388 AGAAACGCAACAAAGTTTGAACA 58.449 34.783 22.23 0.00 40.24 3.18
678 681 4.619336 TGAGAAACGCAACAAAGTTTGAAC 59.381 37.500 22.23 9.42 40.24 3.18
679 682 4.799678 TGAGAAACGCAACAAAGTTTGAA 58.200 34.783 22.23 0.00 40.24 2.69
680 683 4.427096 TGAGAAACGCAACAAAGTTTGA 57.573 36.364 22.23 0.00 40.24 2.69
681 684 5.971202 AGTATGAGAAACGCAACAAAGTTTG 59.029 36.000 14.13 14.13 40.24 2.93
682 685 5.971202 CAGTATGAGAAACGCAACAAAGTTT 59.029 36.000 0.00 0.00 40.10 2.66
683 686 5.065988 ACAGTATGAGAAACGCAACAAAGTT 59.934 36.000 0.00 0.00 39.69 2.66
684 687 4.574828 ACAGTATGAGAAACGCAACAAAGT 59.425 37.500 0.00 0.00 39.69 2.66
685 688 5.095691 ACAGTATGAGAAACGCAACAAAG 57.904 39.130 0.00 0.00 39.69 2.77
686 689 6.795098 ATACAGTATGAGAAACGCAACAAA 57.205 33.333 0.00 0.00 39.69 2.83
687 690 6.795098 AATACAGTATGAGAAACGCAACAA 57.205 33.333 0.00 0.00 39.69 2.83
688 691 6.598525 CAAATACAGTATGAGAAACGCAACA 58.401 36.000 0.00 0.00 39.69 3.33
689 692 5.508224 GCAAATACAGTATGAGAAACGCAAC 59.492 40.000 0.00 0.00 39.69 4.17
690 693 5.411361 AGCAAATACAGTATGAGAAACGCAA 59.589 36.000 0.00 0.00 39.69 4.85
691 694 4.935205 AGCAAATACAGTATGAGAAACGCA 59.065 37.500 0.00 0.00 39.69 5.24
692 695 5.258622 CAGCAAATACAGTATGAGAAACGC 58.741 41.667 0.00 0.00 39.69 4.84
693 696 5.258622 GCAGCAAATACAGTATGAGAAACG 58.741 41.667 0.00 0.00 39.69 3.60
694 697 5.573146 GGCAGCAAATACAGTATGAGAAAC 58.427 41.667 0.00 0.00 39.69 2.78
695 698 4.332543 CGGCAGCAAATACAGTATGAGAAA 59.667 41.667 0.00 0.00 39.69 2.52
696 699 3.871006 CGGCAGCAAATACAGTATGAGAA 59.129 43.478 0.00 0.00 39.69 2.87
697 700 3.118775 ACGGCAGCAAATACAGTATGAGA 60.119 43.478 0.00 0.00 39.69 3.27
698 701 3.198068 ACGGCAGCAAATACAGTATGAG 58.802 45.455 0.00 0.00 39.69 2.90
699 702 3.194861 GACGGCAGCAAATACAGTATGA 58.805 45.455 0.00 0.00 39.69 2.15
700 703 2.287915 GGACGGCAGCAAATACAGTATG 59.712 50.000 0.00 0.00 46.00 2.39
701 704 2.170607 AGGACGGCAGCAAATACAGTAT 59.829 45.455 0.00 0.00 0.00 2.12
704 707 1.009829 GAGGACGGCAGCAAATACAG 58.990 55.000 0.00 0.00 0.00 2.74
848 852 2.035449 GGAAATTTATAACGGGCCAGGC 59.965 50.000 8.08 1.26 0.00 4.85
849 853 2.292292 CGGAAATTTATAACGGGCCAGG 59.708 50.000 8.08 0.00 0.00 4.45
850 854 2.287368 GCGGAAATTTATAACGGGCCAG 60.287 50.000 4.39 1.85 0.00 4.85
851 855 1.677052 GCGGAAATTTATAACGGGCCA 59.323 47.619 4.39 0.00 0.00 5.36
852 856 1.001048 GGCGGAAATTTATAACGGGCC 60.001 52.381 0.00 0.00 0.00 5.80
853 857 1.677052 TGGCGGAAATTTATAACGGGC 59.323 47.619 0.00 0.00 0.00 6.13
854 858 3.818773 AGATGGCGGAAATTTATAACGGG 59.181 43.478 0.00 0.00 0.00 5.28
892 896 2.551459 GACTGTGAATGCTTGAGCTTGT 59.449 45.455 4.44 0.00 42.66 3.16
913 920 5.301835 AGAGATGATGGGGATTGTTGTAG 57.698 43.478 0.00 0.00 0.00 2.74
921 928 0.472543 TGGCGAGAGATGATGGGGAT 60.473 55.000 0.00 0.00 0.00 3.85
937 944 2.217429 TTCTTTGCTTTCGGTTTGGC 57.783 45.000 0.00 0.00 0.00 4.52
985 993 1.491505 GCCATTAGCTCGGTCGCTTC 61.492 60.000 0.00 0.00 41.30 3.86
1226 1243 1.990060 CCCGCCTTCTCTTCCTCCA 60.990 63.158 0.00 0.00 0.00 3.86
1233 1250 2.364448 GACCTCCCCGCCTTCTCT 60.364 66.667 0.00 0.00 0.00 3.10
1472 1535 2.989840 CAAACAGAGACGACTGGTGATC 59.010 50.000 0.00 0.00 41.59 2.92
1483 1547 4.025647 GTCACAACAGCTACAAACAGAGAC 60.026 45.833 0.00 0.00 0.00 3.36
1485 1549 3.060272 CGTCACAACAGCTACAAACAGAG 60.060 47.826 0.00 0.00 0.00 3.35
1491 1555 1.270094 CCTCCGTCACAACAGCTACAA 60.270 52.381 0.00 0.00 0.00 2.41
1493 1557 0.601558 TCCTCCGTCACAACAGCTAC 59.398 55.000 0.00 0.00 0.00 3.58
1494 1558 0.888619 CTCCTCCGTCACAACAGCTA 59.111 55.000 0.00 0.00 0.00 3.32
1495 1559 1.668294 CTCCTCCGTCACAACAGCT 59.332 57.895 0.00 0.00 0.00 4.24
1496 1560 2.029844 GCTCCTCCGTCACAACAGC 61.030 63.158 0.00 0.00 0.00 4.40
1497 1561 0.034059 AAGCTCCTCCGTCACAACAG 59.966 55.000 0.00 0.00 0.00 3.16
1498 1562 1.272490 CTAAGCTCCTCCGTCACAACA 59.728 52.381 0.00 0.00 0.00 3.33
1499 1563 1.544691 TCTAAGCTCCTCCGTCACAAC 59.455 52.381 0.00 0.00 0.00 3.32
1500 1564 1.819288 CTCTAAGCTCCTCCGTCACAA 59.181 52.381 0.00 0.00 0.00 3.33
1501 1565 1.464734 CTCTAAGCTCCTCCGTCACA 58.535 55.000 0.00 0.00 0.00 3.58
1502 1566 0.741915 CCTCTAAGCTCCTCCGTCAC 59.258 60.000 0.00 0.00 0.00 3.67
1503 1567 0.624254 TCCTCTAAGCTCCTCCGTCA 59.376 55.000 0.00 0.00 0.00 4.35
1504 1568 1.134037 TCTCCTCTAAGCTCCTCCGTC 60.134 57.143 0.00 0.00 0.00 4.79
1505 1569 0.920438 TCTCCTCTAAGCTCCTCCGT 59.080 55.000 0.00 0.00 0.00 4.69
1506 1570 1.142060 TCTCTCCTCTAAGCTCCTCCG 59.858 57.143 0.00 0.00 0.00 4.63
1507 1571 2.489073 CCTCTCTCCTCTAAGCTCCTCC 60.489 59.091 0.00 0.00 0.00 4.30
1508 1572 2.174854 ACCTCTCTCCTCTAAGCTCCTC 59.825 54.545 0.00 0.00 0.00 3.71
1509 1573 2.174854 GACCTCTCTCCTCTAAGCTCCT 59.825 54.545 0.00 0.00 0.00 3.69
1510 1574 2.583143 GACCTCTCTCCTCTAAGCTCC 58.417 57.143 0.00 0.00 0.00 4.70
1533 1597 8.970859 ATCAACCCTAAAACTAGATCTCATTG 57.029 34.615 0.00 0.00 0.00 2.82
1644 1727 1.876799 TGGGACAACATGTTAACTGCG 59.123 47.619 11.53 0.00 31.92 5.18
1691 1774 4.766404 AATCGGTGTTCAGATCCAAAAC 57.234 40.909 0.00 0.00 0.00 2.43
1728 1845 4.480115 TGAGGAGAAGACAACTTGGAGTA 58.520 43.478 0.00 0.00 36.39 2.59
1763 1899 9.914834 ATAATGTTAGGGCTAATAACACAGAAA 57.085 29.630 10.95 0.47 43.76 2.52
1776 1912 3.152341 GCTGCATCATAATGTTAGGGCT 58.848 45.455 0.00 0.00 35.18 5.19
1839 1980 5.299279 ACAATCAACTTGTGAAGGTTGGTAG 59.701 40.000 0.00 0.00 46.37 3.18
1878 2023 4.023107 CACATAGACATAGTCTACCCACCG 60.023 50.000 8.88 0.00 46.06 4.94
1886 2031 7.147811 GGAGTTCCTTTCACATAGACATAGTCT 60.148 40.741 4.93 4.93 45.54 3.24
1965 2117 9.745018 CATTGTGGAATGAAGGGAGTATAATAT 57.255 33.333 0.00 0.00 41.49 1.28
1966 2118 8.723365 ACATTGTGGAATGAAGGGAGTATAATA 58.277 33.333 0.00 0.00 41.49 0.98
1967 2119 7.586349 ACATTGTGGAATGAAGGGAGTATAAT 58.414 34.615 0.00 0.00 41.49 1.28
1968 2120 6.969043 ACATTGTGGAATGAAGGGAGTATAA 58.031 36.000 0.00 0.00 41.49 0.98
1969 2121 6.575244 ACATTGTGGAATGAAGGGAGTATA 57.425 37.500 0.00 0.00 41.49 1.47
1970 2122 5.456921 ACATTGTGGAATGAAGGGAGTAT 57.543 39.130 0.00 0.00 41.49 2.12
1971 2123 4.927267 ACATTGTGGAATGAAGGGAGTA 57.073 40.909 0.00 0.00 41.49 2.59
1972 2124 3.814504 ACATTGTGGAATGAAGGGAGT 57.185 42.857 0.00 0.00 41.49 3.85
1973 2125 4.637534 CACTACATTGTGGAATGAAGGGAG 59.362 45.833 7.20 0.00 41.49 4.30
1974 2126 4.588899 CACTACATTGTGGAATGAAGGGA 58.411 43.478 7.20 0.00 41.49 4.20
1975 2127 3.129287 GCACTACATTGTGGAATGAAGGG 59.871 47.826 7.20 0.00 41.49 3.95
1976 2128 3.129287 GGCACTACATTGTGGAATGAAGG 59.871 47.826 7.20 0.00 41.49 3.46
1977 2129 4.012374 AGGCACTACATTGTGGAATGAAG 58.988 43.478 7.20 0.00 41.96 3.02
1978 2130 4.032960 AGGCACTACATTGTGGAATGAA 57.967 40.909 7.20 0.00 41.96 2.57
1979 2131 3.719268 AGGCACTACATTGTGGAATGA 57.281 42.857 7.20 0.00 41.96 2.57
2006 2158 6.872920 AGTTGGCATAGTTTGACTTCAAAAA 58.127 32.000 5.98 0.00 46.08 1.94
2007 2159 6.463995 AGTTGGCATAGTTTGACTTCAAAA 57.536 33.333 5.98 0.00 46.08 2.44
2008 2160 6.463995 AAGTTGGCATAGTTTGACTTCAAA 57.536 33.333 0.07 0.07 42.90 2.69
2009 2161 6.096141 TCAAAGTTGGCATAGTTTGACTTCAA 59.904 34.615 19.51 0.00 40.64 2.69
2010 2162 5.592282 TCAAAGTTGGCATAGTTTGACTTCA 59.408 36.000 19.51 6.48 40.64 3.02
2011 2163 6.072112 TCAAAGTTGGCATAGTTTGACTTC 57.928 37.500 19.51 0.00 40.64 3.01
2015 2167 5.843673 TTGTCAAAGTTGGCATAGTTTGA 57.156 34.783 19.51 19.51 43.10 2.69
2016 2168 6.479660 ACAATTGTCAAAGTTGGCATAGTTTG 59.520 34.615 4.92 16.87 43.10 2.93
2017 2169 6.581712 ACAATTGTCAAAGTTGGCATAGTTT 58.418 32.000 4.92 0.00 43.10 2.66
2018 2170 6.160576 ACAATTGTCAAAGTTGGCATAGTT 57.839 33.333 4.92 0.00 43.10 2.24
2019 2171 5.789643 ACAATTGTCAAAGTTGGCATAGT 57.210 34.783 4.92 0.00 43.10 2.12
2020 2172 9.853555 TTTATACAATTGTCAAAGTTGGCATAG 57.146 29.630 15.85 0.00 43.10 2.23
2021 2173 9.853555 CTTTATACAATTGTCAAAGTTGGCATA 57.146 29.630 24.32 10.22 43.10 3.14
2022 2174 8.584157 TCTTTATACAATTGTCAAAGTTGGCAT 58.416 29.630 27.82 13.54 43.10 4.40
2023 2175 7.946207 TCTTTATACAATTGTCAAAGTTGGCA 58.054 30.769 27.82 15.94 41.72 4.92
2024 2176 8.810652 TTCTTTATACAATTGTCAAAGTTGGC 57.189 30.769 27.82 0.00 34.48 4.52
2052 2204 9.476928 AGGTTTAGTATTGTAGATGTAGACAGT 57.523 33.333 0.00 0.00 0.00 3.55
2053 2205 9.737427 CAGGTTTAGTATTGTAGATGTAGACAG 57.263 37.037 0.00 0.00 0.00 3.51
2054 2206 9.251440 ACAGGTTTAGTATTGTAGATGTAGACA 57.749 33.333 0.00 0.00 0.00 3.41
2095 2247 8.562052 GCACATCATTGAATACATCATGAGTTA 58.438 33.333 0.09 0.00 38.03 2.24
2096 2248 7.067737 TGCACATCATTGAATACATCATGAGTT 59.932 33.333 0.09 0.00 38.03 3.01
2097 2249 6.544564 TGCACATCATTGAATACATCATGAGT 59.455 34.615 0.09 2.37 38.03 3.41
2098 2250 6.966021 TGCACATCATTGAATACATCATGAG 58.034 36.000 0.09 0.00 38.03 2.90
2099 2251 6.945938 TGCACATCATTGAATACATCATGA 57.054 33.333 0.00 0.00 38.03 3.07
2100 2252 8.487176 CAAATGCACATCATTGAATACATCATG 58.513 33.333 0.00 0.00 44.23 3.07
2101 2253 7.655732 CCAAATGCACATCATTGAATACATCAT 59.344 33.333 0.00 0.00 44.23 2.45
2102 2254 6.981559 CCAAATGCACATCATTGAATACATCA 59.018 34.615 0.00 0.00 44.23 3.07
2103 2255 6.982141 ACCAAATGCACATCATTGAATACATC 59.018 34.615 0.00 0.00 44.23 3.06
2104 2256 6.880484 ACCAAATGCACATCATTGAATACAT 58.120 32.000 0.00 0.00 44.23 2.29
2105 2257 6.283544 ACCAAATGCACATCATTGAATACA 57.716 33.333 0.00 0.00 44.23 2.29
2106 2258 8.876275 AATACCAAATGCACATCATTGAATAC 57.124 30.769 0.00 0.00 44.23 1.89
2108 2260 9.537192 CTAAATACCAAATGCACATCATTGAAT 57.463 29.630 0.00 0.00 44.23 2.57
2109 2261 8.747471 TCTAAATACCAAATGCACATCATTGAA 58.253 29.630 0.00 0.00 44.23 2.69
2110 2262 8.291191 TCTAAATACCAAATGCACATCATTGA 57.709 30.769 0.00 0.00 44.23 2.57
2111 2263 8.974408 CATCTAAATACCAAATGCACATCATTG 58.026 33.333 0.00 0.00 44.23 2.82
2112 2264 8.698210 ACATCTAAATACCAAATGCACATCATT 58.302 29.630 0.00 0.00 46.82 2.57
2113 2265 8.241497 ACATCTAAATACCAAATGCACATCAT 57.759 30.769 0.00 0.00 36.87 2.45
2114 2266 7.643569 ACATCTAAATACCAAATGCACATCA 57.356 32.000 0.00 0.00 0.00 3.07
2115 2267 8.076178 GGTACATCTAAATACCAAATGCACATC 58.924 37.037 0.00 0.00 40.61 3.06
2116 2268 7.779798 AGGTACATCTAAATACCAAATGCACAT 59.220 33.333 0.00 0.00 42.95 3.21
2117 2269 7.116075 AGGTACATCTAAATACCAAATGCACA 58.884 34.615 0.00 0.00 42.95 4.57
2118 2270 7.568199 AGGTACATCTAAATACCAAATGCAC 57.432 36.000 0.00 0.00 42.95 4.57
2119 2271 8.491134 AGTAGGTACATCTAAATACCAAATGCA 58.509 33.333 3.43 0.00 42.95 3.96
2120 2272 8.904099 AGTAGGTACATCTAAATACCAAATGC 57.096 34.615 3.43 0.00 42.95 3.56
2178 2330 9.988815 TGCCTATAGATTTTTGCAAAAGTTAAA 57.011 25.926 22.78 9.93 0.00 1.52
2179 2331 9.418045 GTGCCTATAGATTTTTGCAAAAGTTAA 57.582 29.630 22.78 13.26 0.00 2.01
2180 2332 8.802267 AGTGCCTATAGATTTTTGCAAAAGTTA 58.198 29.630 22.78 16.46 0.00 2.24
2181 2333 7.670364 AGTGCCTATAGATTTTTGCAAAAGTT 58.330 30.769 22.78 15.33 0.00 2.66
2182 2334 7.232118 AGTGCCTATAGATTTTTGCAAAAGT 57.768 32.000 22.78 20.72 0.00 2.66
2193 2345 9.476928 AGTTCCGTAATATAGTGCCTATAGATT 57.523 33.333 0.00 0.00 33.22 2.40
2194 2346 8.904834 CAGTTCCGTAATATAGTGCCTATAGAT 58.095 37.037 0.00 0.00 33.22 1.98
2195 2347 8.105197 TCAGTTCCGTAATATAGTGCCTATAGA 58.895 37.037 0.00 0.00 33.22 1.98
2196 2348 8.277490 TCAGTTCCGTAATATAGTGCCTATAG 57.723 38.462 7.64 0.00 33.22 1.31
2197 2349 7.338703 CCTCAGTTCCGTAATATAGTGCCTATA 59.661 40.741 4.91 4.91 34.07 1.31
2198 2350 6.153000 CCTCAGTTCCGTAATATAGTGCCTAT 59.847 42.308 1.18 1.18 0.00 2.57
2199 2351 5.475909 CCTCAGTTCCGTAATATAGTGCCTA 59.524 44.000 0.00 0.00 0.00 3.93
2200 2352 4.281182 CCTCAGTTCCGTAATATAGTGCCT 59.719 45.833 0.00 0.00 0.00 4.75
2201 2353 4.557205 CCTCAGTTCCGTAATATAGTGCC 58.443 47.826 0.00 0.00 0.00 5.01
2202 2354 4.280174 TCCCTCAGTTCCGTAATATAGTGC 59.720 45.833 0.00 0.00 0.00 4.40
2203 2355 5.535406 ACTCCCTCAGTTCCGTAATATAGTG 59.465 44.000 0.00 0.00 26.56 2.74
2204 2356 5.703310 ACTCCCTCAGTTCCGTAATATAGT 58.297 41.667 0.00 0.00 26.56 2.12
2205 2357 6.941436 ACTACTCCCTCAGTTCCGTAATATAG 59.059 42.308 0.00 0.00 36.43 1.31
2206 2358 6.845908 ACTACTCCCTCAGTTCCGTAATATA 58.154 40.000 0.00 0.00 36.43 0.86
2207 2359 5.703310 ACTACTCCCTCAGTTCCGTAATAT 58.297 41.667 0.00 0.00 36.43 1.28
2208 2360 5.121380 ACTACTCCCTCAGTTCCGTAATA 57.879 43.478 0.00 0.00 36.43 0.98
2209 2361 3.978610 ACTACTCCCTCAGTTCCGTAAT 58.021 45.455 0.00 0.00 36.43 1.89
2210 2362 3.446442 ACTACTCCCTCAGTTCCGTAA 57.554 47.619 0.00 0.00 36.43 3.18
2211 2363 3.245016 TGAACTACTCCCTCAGTTCCGTA 60.245 47.826 10.92 0.00 46.59 4.02
2212 2364 2.169330 GAACTACTCCCTCAGTTCCGT 58.831 52.381 3.61 0.00 43.12 4.69
2213 2365 2.168496 TGAACTACTCCCTCAGTTCCG 58.832 52.381 10.92 0.00 46.59 4.30
2214 2366 3.769844 TGATGAACTACTCCCTCAGTTCC 59.230 47.826 10.92 0.00 46.59 3.62
2216 2368 6.198639 ACTATGATGAACTACTCCCTCAGTT 58.801 40.000 0.00 0.00 37.69 3.16
2217 2369 5.772004 ACTATGATGAACTACTCCCTCAGT 58.228 41.667 0.00 0.00 39.41 3.41
2218 2370 6.322456 TGAACTATGATGAACTACTCCCTCAG 59.678 42.308 0.00 0.00 0.00 3.35
2219 2371 6.194967 TGAACTATGATGAACTACTCCCTCA 58.805 40.000 0.00 0.00 0.00 3.86
2220 2372 6.716934 TGAACTATGATGAACTACTCCCTC 57.283 41.667 0.00 0.00 0.00 4.30
2221 2373 7.682787 AATGAACTATGATGAACTACTCCCT 57.317 36.000 0.00 0.00 0.00 4.20
2222 2374 8.643324 ACTAATGAACTATGATGAACTACTCCC 58.357 37.037 0.00 0.00 0.00 4.30
2226 2378 9.922305 GCAAACTAATGAACTATGATGAACTAC 57.078 33.333 0.00 0.00 0.00 2.73
2227 2379 9.890629 AGCAAACTAATGAACTATGATGAACTA 57.109 29.630 0.00 0.00 0.00 2.24
2228 2380 8.798859 AGCAAACTAATGAACTATGATGAACT 57.201 30.769 0.00 0.00 0.00 3.01
2229 2381 8.887717 AGAGCAAACTAATGAACTATGATGAAC 58.112 33.333 0.00 0.00 0.00 3.18
2230 2382 9.453572 AAGAGCAAACTAATGAACTATGATGAA 57.546 29.630 0.00 0.00 0.00 2.57
2233 2385 9.890629 TGTAAGAGCAAACTAATGAACTATGAT 57.109 29.630 0.00 0.00 0.00 2.45
2234 2386 9.890629 ATGTAAGAGCAAACTAATGAACTATGA 57.109 29.630 0.00 0.00 0.00 2.15
2239 2391 9.722056 CCATAATGTAAGAGCAAACTAATGAAC 57.278 33.333 0.00 0.00 0.00 3.18
2240 2392 8.405531 GCCATAATGTAAGAGCAAACTAATGAA 58.594 33.333 0.00 0.00 0.00 2.57
2241 2393 7.254761 CGCCATAATGTAAGAGCAAACTAATGA 60.255 37.037 0.00 0.00 0.00 2.57
2242 2394 6.852853 CGCCATAATGTAAGAGCAAACTAATG 59.147 38.462 0.00 0.00 0.00 1.90
2243 2395 6.017109 CCGCCATAATGTAAGAGCAAACTAAT 60.017 38.462 0.00 0.00 0.00 1.73
2244 2396 5.295787 CCGCCATAATGTAAGAGCAAACTAA 59.704 40.000 0.00 0.00 0.00 2.24
2245 2397 4.814234 CCGCCATAATGTAAGAGCAAACTA 59.186 41.667 0.00 0.00 0.00 2.24
2246 2398 3.627577 CCGCCATAATGTAAGAGCAAACT 59.372 43.478 0.00 0.00 0.00 2.66
2247 2399 3.377172 ACCGCCATAATGTAAGAGCAAAC 59.623 43.478 0.00 0.00 0.00 2.93
2248 2400 3.376859 CACCGCCATAATGTAAGAGCAAA 59.623 43.478 0.00 0.00 0.00 3.68
2249 2401 2.942376 CACCGCCATAATGTAAGAGCAA 59.058 45.455 0.00 0.00 0.00 3.91
2250 2402 2.560504 CACCGCCATAATGTAAGAGCA 58.439 47.619 0.00 0.00 0.00 4.26
2251 2403 1.873591 CCACCGCCATAATGTAAGAGC 59.126 52.381 0.00 0.00 0.00 4.09
2252 2404 2.872245 CACCACCGCCATAATGTAAGAG 59.128 50.000 0.00 0.00 0.00 2.85
2253 2405 2.420827 CCACCACCGCCATAATGTAAGA 60.421 50.000 0.00 0.00 0.00 2.10
2254 2406 1.946768 CCACCACCGCCATAATGTAAG 59.053 52.381 0.00 0.00 0.00 2.34
2255 2407 1.560146 TCCACCACCGCCATAATGTAA 59.440 47.619 0.00 0.00 0.00 2.41
2256 2408 1.140052 CTCCACCACCGCCATAATGTA 59.860 52.381 0.00 0.00 0.00 2.29
2257 2409 0.107214 CTCCACCACCGCCATAATGT 60.107 55.000 0.00 0.00 0.00 2.71
2258 2410 0.107214 ACTCCACCACCGCCATAATG 60.107 55.000 0.00 0.00 0.00 1.90
2259 2411 1.140252 GTACTCCACCACCGCCATAAT 59.860 52.381 0.00 0.00 0.00 1.28
2260 2412 0.538118 GTACTCCACCACCGCCATAA 59.462 55.000 0.00 0.00 0.00 1.90
2261 2413 0.324923 AGTACTCCACCACCGCCATA 60.325 55.000 0.00 0.00 0.00 2.74
2262 2414 0.324923 TAGTACTCCACCACCGCCAT 60.325 55.000 0.00 0.00 0.00 4.40
2263 2415 0.324923 ATAGTACTCCACCACCGCCA 60.325 55.000 0.00 0.00 0.00 5.69
2264 2416 1.339291 GTATAGTACTCCACCACCGCC 59.661 57.143 0.00 0.00 0.00 6.13
2265 2417 1.002033 CGTATAGTACTCCACCACCGC 60.002 57.143 0.00 0.00 0.00 5.68
2266 2418 2.564771 TCGTATAGTACTCCACCACCG 58.435 52.381 0.00 0.00 0.00 4.94
2267 2419 3.950395 AGTTCGTATAGTACTCCACCACC 59.050 47.826 0.00 0.00 0.00 4.61
2268 2420 4.637534 TCAGTTCGTATAGTACTCCACCAC 59.362 45.833 0.00 0.00 0.00 4.16
2269 2421 4.847198 TCAGTTCGTATAGTACTCCACCA 58.153 43.478 0.00 0.00 0.00 4.17
2270 2422 5.530171 TCATCAGTTCGTATAGTACTCCACC 59.470 44.000 0.00 0.00 0.00 4.61
2271 2423 6.615264 TCATCAGTTCGTATAGTACTCCAC 57.385 41.667 0.00 0.00 0.00 4.02
2272 2424 6.039047 GGTTCATCAGTTCGTATAGTACTCCA 59.961 42.308 0.00 0.00 0.00 3.86
2273 2425 6.039047 TGGTTCATCAGTTCGTATAGTACTCC 59.961 42.308 0.00 0.00 0.00 3.85
2274 2426 7.024340 TGGTTCATCAGTTCGTATAGTACTC 57.976 40.000 0.00 0.00 0.00 2.59
2275 2427 7.584122 ATGGTTCATCAGTTCGTATAGTACT 57.416 36.000 0.00 0.00 0.00 2.73
2276 2428 9.178427 GTAATGGTTCATCAGTTCGTATAGTAC 57.822 37.037 0.00 0.00 0.00 2.73
2277 2429 8.355169 GGTAATGGTTCATCAGTTCGTATAGTA 58.645 37.037 0.00 0.00 0.00 1.82
2278 2430 7.147794 TGGTAATGGTTCATCAGTTCGTATAGT 60.148 37.037 0.00 0.00 0.00 2.12
2279 2431 7.169308 GTGGTAATGGTTCATCAGTTCGTATAG 59.831 40.741 0.00 0.00 0.00 1.31
2280 2432 6.982141 GTGGTAATGGTTCATCAGTTCGTATA 59.018 38.462 0.00 0.00 0.00 1.47
2281 2433 5.815740 GTGGTAATGGTTCATCAGTTCGTAT 59.184 40.000 0.00 0.00 0.00 3.06
2324 2476 9.875708 ATTAAGTAGAAGATCTGGAGATACTGT 57.124 33.333 0.00 0.00 34.37 3.55
2327 2479 9.418045 GCAATTAAGTAGAAGATCTGGAGATAC 57.582 37.037 0.00 0.00 34.37 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.